HEADER ENDOCYTOSIS 01-MAY-09 3HAJ TITLE CRYSTAL STRUCTURE OF HUMAN PACSIN2 F-BAR DOMAIN (P212121 LATTICE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PACSIN2 F-BAR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS COMPND 5 PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PACSIN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PACSIN, SYNDAPIN, FAP52, F-BAR, ALTERNATIVE SPLICING, COILED COIL, KEYWDS 2 CYTOPLASMIC VESICLE, ENDOCYTOSIS, PHOSPHOPROTEIN, POLYMORPHISM, SH3 KEYWDS 3 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.WANG,M.V.A.S.NAVARRO,G.PENG,K.R.RAJASHANKAR,H.SONDERMANN REVDAT 5 06-SEP-23 3HAJ 1 REMARK REVDAT 4 01-NOV-17 3HAJ 1 REMARK REVDAT 3 25-AUG-09 3HAJ 1 JRNL REVDAT 2 14-JUL-09 3HAJ 1 JRNL REVDAT 1 16-JUN-09 3HAJ 0 JRNL AUTH Q.WANG,M.V.NAVARRO,G.PENG,E.MOLINELLI,S.LIN GOH,B.L.JUDSON, JRNL AUTH 2 K.R.RAJASHANKAR,H.SONDERMANN JRNL TITL MOLECULAR MECHANISM OF MEMBRANE CONSTRICTION AND TUBULATION JRNL TITL 2 MEDIATED BY THE F-BAR PROTEIN PACSIN/SYNDAPIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 12700 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19549836 JRNL DOI 10.1073/PNAS.0902974106 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 25178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7210 - 5.7796 0.95 2881 152 0.2451 0.2952 REMARK 3 2 5.7796 - 4.5889 0.97 2738 144 0.1932 0.2237 REMARK 3 3 4.5889 - 4.0093 0.98 2711 143 0.1845 0.2049 REMARK 3 4 4.0093 - 3.6429 0.97 2729 144 0.1956 0.2588 REMARK 3 5 3.6429 - 3.3819 0.98 2684 141 0.1995 0.2595 REMARK 3 6 3.3819 - 3.1825 0.98 2682 141 0.2217 0.2811 REMARK 3 7 3.1825 - 3.0232 0.98 2707 142 0.2333 0.2872 REMARK 3 8 3.0232 - 2.8916 0.98 2640 139 0.2460 0.3021 REMARK 3 9 2.8916 - 2.7800 0.79 2147 113 0.3435 0.4080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 53.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.50100 REMARK 3 B22 (A**2) : -0.84200 REMARK 3 B33 (A**2) : -12.48700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4812 REMARK 3 ANGLE : 0.672 6440 REMARK 3 CHIRALITY : 0.051 646 REMARK 3 PLANARITY : 0.003 840 REMARK 3 DIHEDRAL : 20.339 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3HAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-MME 5000, 0.1 M BIS-TRIS PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.64750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 178.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.19750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 178.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.64750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.19750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 TYR A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLU A 303 REMARK 465 GLU A 304 REMARK 465 TRP A 305 REMARK 465 SER A 306 REMARK 465 ALA A 307 REMARK 465 ASP A 308 REMARK 465 LEU A 309 REMARK 465 ASN A 310 REMARK 465 ARG A 311 REMARK 465 THR A 312 REMARK 465 LEU A 313 REMARK 465 SER A 314 REMARK 465 ARG A 315 REMARK 465 ARG A 316 REMARK 465 GLU A 317 REMARK 465 LYS A 318 REMARK 465 LYS A 319 REMARK 465 LYS A 320 REMARK 465 ALA A 321 REMARK 465 THR A 322 REMARK 465 ASP A 323 REMARK 465 GLY A 324 REMARK 465 VAL A 325 REMARK 465 THR A 326 REMARK 465 LEU A 327 REMARK 465 THR A 328 REMARK 465 GLY A 329 REMARK 465 ILE A 330 REMARK 465 ASN A 331 REMARK 465 GLN A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 ASP A 335 REMARK 465 GLN A 336 REMARK 465 SER A 337 REMARK 465 LEU A 338 REMARK 465 PRO A 339 REMARK 465 SER A 340 REMARK 465 LYS A 341 REMARK 465 PRO A 342 REMARK 465 SER A 343 REMARK 465 SER A 344 REMARK 465 THR A 345 REMARK 465 LEU A 346 REMARK 465 ASN A 347 REMARK 465 VAL A 348 REMARK 465 PRO A 349 REMARK 465 SER A 350 REMARK 465 ASN A 351 REMARK 465 PRO A 352 REMARK 465 ALA A 353 REMARK 465 GLN A 354 REMARK 465 SER A 355 REMARK 465 ALA A 356 REMARK 465 GLN A 357 REMARK 465 SER A 358 REMARK 465 GLN A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 TYR A 362 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 PHE A 365 REMARK 465 GLU A 366 REMARK 465 ASP A 367 REMARK 465 GLU A 368 REMARK 465 ASP A 369 REMARK 465 ASP A 370 REMARK 465 THR A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 THR A 374 REMARK 465 VAL A 375 REMARK 465 SER A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 ASP A 379 REMARK 465 ASP A 380 REMARK 465 THR A 381 REMARK 465 LYS A 382 REMARK 465 ALA A 383 REMARK 465 LYS A 384 REMARK 465 ASN A 385 REMARK 465 VAL A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 TYR A 389 REMARK 465 GLU A 390 REMARK 465 LYS A 391 REMARK 465 THR A 392 REMARK 465 GLN A 393 REMARK 465 SER A 394 REMARK 465 TYR A 395 REMARK 465 PRO A 396 REMARK 465 THR A 397 REMARK 465 ASP A 398 REMARK 465 TRP A 399 REMARK 465 SER A 400 REMARK 465 ASP A 401 REMARK 465 ASP A 402 REMARK 465 GLU A 403 REMARK 465 SER A 404 REMARK 465 ASN A 405 REMARK 465 ASN A 406 REMARK 465 PRO A 407 REMARK 465 PHE A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 THR A 411 REMARK 465 ASP A 412 REMARK 465 ALA A 413 REMARK 465 ASN A 414 REMARK 465 GLY A 415 REMARK 465 ASP A 416 REMARK 465 SER A 417 REMARK 465 ASN A 418 REMARK 465 PRO A 419 REMARK 465 PHE A 420 REMARK 465 ASP A 421 REMARK 465 ASP A 422 REMARK 465 ASP A 423 REMARK 465 ALA A 424 REMARK 465 THR A 425 REMARK 465 SER A 426 REMARK 465 GLY A 427 REMARK 465 THR A 428 REMARK 465 GLU A 429 REMARK 465 VAL A 430 REMARK 465 ARG A 431 REMARK 465 VAL A 432 REMARK 465 ARG A 433 REMARK 465 ALA A 434 REMARK 465 LEU A 435 REMARK 465 TYR A 436 REMARK 465 ASP A 437 REMARK 465 TYR A 438 REMARK 465 GLU A 439 REMARK 465 GLY A 440 REMARK 465 GLN A 441 REMARK 465 GLU A 442 REMARK 465 HIS A 443 REMARK 465 ASP A 444 REMARK 465 GLU A 445 REMARK 465 LEU A 446 REMARK 465 SER A 447 REMARK 465 PHE A 448 REMARK 465 LYS A 449 REMARK 465 ALA A 450 REMARK 465 GLY A 451 REMARK 465 ASP A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 THR A 455 REMARK 465 LYS A 456 REMARK 465 MET A 457 REMARK 465 GLU A 458 REMARK 465 ASP A 459 REMARK 465 GLU A 460 REMARK 465 ASP A 461 REMARK 465 GLU A 462 REMARK 465 GLN A 463 REMARK 465 GLY A 464 REMARK 465 TRP A 465 REMARK 465 CYS A 466 REMARK 465 LYS A 467 REMARK 465 GLY A 468 REMARK 465 ARG A 469 REMARK 465 LEU A 470 REMARK 465 ASP A 471 REMARK 465 ASN A 472 REMARK 465 GLY A 473 REMARK 465 GLN A 474 REMARK 465 VAL A 475 REMARK 465 GLY A 476 REMARK 465 LEU A 477 REMARK 465 TYR A 478 REMARK 465 PRO A 479 REMARK 465 ALA A 480 REMARK 465 ASN A 481 REMARK 465 TYR A 482 REMARK 465 VAL A 483 REMARK 465 GLU A 484 REMARK 465 ALA A 485 REMARK 465 ILE A 486 REMARK 465 GLN A 487 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 THR B 5 REMARK 465 TYR B 6 REMARK 465 ASP B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 VAL B 12 REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 GLN B 301 REMARK 465 PHE B 302 REMARK 465 GLU B 303 REMARK 465 GLU B 304 REMARK 465 TRP B 305 REMARK 465 SER B 306 REMARK 465 ALA B 307 REMARK 465 ASP B 308 REMARK 465 LEU B 309 REMARK 465 ASN B 310 REMARK 465 ARG B 311 REMARK 465 THR B 312 REMARK 465 LEU B 313 REMARK 465 SER B 314 REMARK 465 ARG B 315 REMARK 465 ARG B 316 REMARK 465 GLU B 317 REMARK 465 LYS B 318 REMARK 465 LYS B 319 REMARK 465 LYS B 320 REMARK 465 ALA B 321 REMARK 465 THR B 322 REMARK 465 ASP B 323 REMARK 465 GLY B 324 REMARK 465 VAL B 325 REMARK 465 THR B 326 REMARK 465 LEU B 327 REMARK 465 THR B 328 REMARK 465 GLY B 329 REMARK 465 ILE B 330 REMARK 465 ASN B 331 REMARK 465 GLN B 332 REMARK 465 THR B 333 REMARK 465 GLY B 334 REMARK 465 ASP B 335 REMARK 465 GLN B 336 REMARK 465 SER B 337 REMARK 465 LEU B 338 REMARK 465 PRO B 339 REMARK 465 SER B 340 REMARK 465 LYS B 341 REMARK 465 PRO B 342 REMARK 465 SER B 343 REMARK 465 SER B 344 REMARK 465 THR B 345 REMARK 465 LEU B 346 REMARK 465 ASN B 347 REMARK 465 VAL B 348 REMARK 465 PRO B 349 REMARK 465 SER B 350 REMARK 465 ASN B 351 REMARK 465 PRO B 352 REMARK 465 ALA B 353 REMARK 465 GLN B 354 REMARK 465 SER B 355 REMARK 465 ALA B 356 REMARK 465 GLN B 357 REMARK 465 SER B 358 REMARK 465 GLN B 359 REMARK 465 SER B 360 REMARK 465 SER B 361 REMARK 465 TYR B 362 REMARK 465 ASN B 363 REMARK 465 PRO B 364 REMARK 465 PHE B 365 REMARK 465 GLU B 366 REMARK 465 ASP B 367 REMARK 465 GLU B 368 REMARK 465 ASP B 369 REMARK 465 ASP B 370 REMARK 465 THR B 371 REMARK 465 GLY B 372 REMARK 465 SER B 373 REMARK 465 THR B 374 REMARK 465 VAL B 375 REMARK 465 SER B 376 REMARK 465 GLU B 377 REMARK 465 LYS B 378 REMARK 465 ASP B 379 REMARK 465 ASP B 380 REMARK 465 THR B 381 REMARK 465 LYS B 382 REMARK 465 ALA B 383 REMARK 465 LYS B 384 REMARK 465 ASN B 385 REMARK 465 VAL B 386 REMARK 465 SER B 387 REMARK 465 SER B 388 REMARK 465 TYR B 389 REMARK 465 GLU B 390 REMARK 465 LYS B 391 REMARK 465 THR B 392 REMARK 465 GLN B 393 REMARK 465 SER B 394 REMARK 465 TYR B 395 REMARK 465 PRO B 396 REMARK 465 THR B 397 REMARK 465 ASP B 398 REMARK 465 TRP B 399 REMARK 465 SER B 400 REMARK 465 ASP B 401 REMARK 465 ASP B 402 REMARK 465 GLU B 403 REMARK 465 SER B 404 REMARK 465 ASN B 405 REMARK 465 ASN B 406 REMARK 465 PRO B 407 REMARK 465 PHE B 408 REMARK 465 SER B 409 REMARK 465 SER B 410 REMARK 465 THR B 411 REMARK 465 ASP B 412 REMARK 465 ALA B 413 REMARK 465 ASN B 414 REMARK 465 GLY B 415 REMARK 465 ASP B 416 REMARK 465 SER B 417 REMARK 465 ASN B 418 REMARK 465 PRO B 419 REMARK 465 PHE B 420 REMARK 465 ASP B 421 REMARK 465 ASP B 422 REMARK 465 ASP B 423 REMARK 465 ALA B 424 REMARK 465 THR B 425 REMARK 465 SER B 426 REMARK 465 GLY B 427 REMARK 465 THR B 428 REMARK 465 GLU B 429 REMARK 465 VAL B 430 REMARK 465 ARG B 431 REMARK 465 VAL B 432 REMARK 465 ARG B 433 REMARK 465 ALA B 434 REMARK 465 LEU B 435 REMARK 465 TYR B 436 REMARK 465 ASP B 437 REMARK 465 TYR B 438 REMARK 465 GLU B 439 REMARK 465 GLY B 440 REMARK 465 GLN B 441 REMARK 465 GLU B 442 REMARK 465 HIS B 443 REMARK 465 ASP B 444 REMARK 465 GLU B 445 REMARK 465 LEU B 446 REMARK 465 SER B 447 REMARK 465 PHE B 448 REMARK 465 LYS B 449 REMARK 465 ALA B 450 REMARK 465 GLY B 451 REMARK 465 ASP B 452 REMARK 465 GLU B 453 REMARK 465 LEU B 454 REMARK 465 THR B 455 REMARK 465 LYS B 456 REMARK 465 MET B 457 REMARK 465 GLU B 458 REMARK 465 ASP B 459 REMARK 465 GLU B 460 REMARK 465 ASP B 461 REMARK 465 GLU B 462 REMARK 465 GLN B 463 REMARK 465 GLY B 464 REMARK 465 TRP B 465 REMARK 465 CYS B 466 REMARK 465 LYS B 467 REMARK 465 GLY B 468 REMARK 465 ARG B 469 REMARK 465 LEU B 470 REMARK 465 ASP B 471 REMARK 465 ASN B 472 REMARK 465 GLY B 473 REMARK 465 GLN B 474 REMARK 465 VAL B 475 REMARK 465 GLY B 476 REMARK 465 LEU B 477 REMARK 465 TYR B 478 REMARK 465 PRO B 479 REMARK 465 ALA B 480 REMARK 465 ASN B 481 REMARK 465 TYR B 482 REMARK 465 VAL B 483 REMARK 465 GLU B 484 REMARK 465 ALA B 485 REMARK 465 ILE B 486 REMARK 465 GLN B 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 302 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 209 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 228 O HOH B 508 2.03 REMARK 500 NH2 ARG B 65 O HOH B 500 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 -69.38 -101.62 REMARK 500 HIS A 291 -4.83 -148.09 REMARK 500 ASP B 108 -72.27 -100.72 REMARK 500 LEU B 183 82.34 53.06 REMARK 500 HIS B 291 -0.60 -146.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 488 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 71 O REMARK 620 2 GLU A 72 O 84.1 REMARK 620 3 GLY A 74 O 94.3 88.6 REMARK 620 4 GLN A 76 O 83.2 166.4 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 488 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 71 O REMARK 620 2 GLU B 72 O 82.0 REMARK 620 3 GLY B 74 O 81.9 82.3 REMARK 620 4 GLN B 76 O 92.6 174.4 98.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 488 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HAH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PACSIN1 F-BAR DOMAIN (C2 LATTICE) REMARK 900 RELATED ID: 3HAI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PACSIN1 F-BAR DOMAIN (P21 LATTICE) DBREF 3HAJ A 2 487 UNP Q9UNF0 PACN2_HUMAN 1 486 DBREF 3HAJ B 2 487 UNP Q9UNF0 PACN2_HUMAN 1 486 SEQRES 1 A 486 MET SER VAL THR TYR ASP ASP SER VAL GLY VAL GLU VAL SEQRES 2 A 486 SER SER ASP SER PHE TRP GLU VAL GLY ASN TYR LYS ARG SEQRES 3 A 486 THR VAL LYS ARG ILE ASP ASP GLY HIS ARG LEU CYS SER SEQRES 4 A 486 ASP LEU MET ASN CYS LEU HIS GLU ARG ALA ARG ILE GLU SEQRES 5 A 486 LYS ALA TYR ALA GLN GLN LEU THR GLU TRP ALA ARG ARG SEQRES 6 A 486 TRP ARG GLN LEU VAL GLU LYS GLY PRO GLN TYR GLY THR SEQRES 7 A 486 VAL GLU LYS ALA TRP MET ALA PHE MET SER GLU ALA GLU SEQRES 8 A 486 ARG VAL SER GLU LEU HIS LEU GLU VAL LYS ALA SER LEU SEQRES 9 A 486 MET ASN ASP ASP PHE GLU LYS ILE LYS ASN TRP GLN LYS SEQRES 10 A 486 GLU ALA PHE HIS LYS GLN MET MET GLY GLY PHE LYS GLU SEQRES 11 A 486 THR LYS GLU ALA GLU ASP GLY PHE ARG LYS ALA GLN LYS SEQRES 12 A 486 PRO TRP ALA LYS LYS LEU LYS GLU VAL GLU ALA ALA LYS SEQRES 13 A 486 LYS ALA HIS HIS ALA ALA CYS LYS GLU GLU LYS LEU ALA SEQRES 14 A 486 ILE SER ARG GLU ALA ASN SER LYS ALA ASP PRO SER LEU SEQRES 15 A 486 ASN PRO GLU GLN LEU LYS LYS LEU GLN ASP LYS ILE GLU SEQRES 16 A 486 LYS CYS LYS GLN ASP VAL LEU LYS THR LYS GLU LYS TYR SEQRES 17 A 486 GLU LYS SER LEU LYS GLU LEU ASP GLN GLY THR PRO GLN SEQRES 18 A 486 TYR MET GLU ASN MET GLU GLN VAL PHE GLU GLN CYS GLN SEQRES 19 A 486 GLN PHE GLU GLU LYS ARG LEU ARG PHE PHE ARG GLU VAL SEQRES 20 A 486 LEU LEU GLU VAL GLN LYS HIS LEU ASP LEU SER ASN VAL SEQRES 21 A 486 ALA GLY TYR LYS ALA ILE TYR HIS ASP LEU GLU GLN SER SEQRES 22 A 486 ILE ARG ALA ALA ASP ALA VAL GLU ASP LEU ARG TRP PHE SEQRES 23 A 486 ARG ALA ASN HIS GLY PRO GLY MET ALA MET ASN TRP PRO SEQRES 24 A 486 GLN PHE GLU GLU TRP SER ALA ASP LEU ASN ARG THR LEU SEQRES 25 A 486 SER ARG ARG GLU LYS LYS LYS ALA THR ASP GLY VAL THR SEQRES 26 A 486 LEU THR GLY ILE ASN GLN THR GLY ASP GLN SER LEU PRO SEQRES 27 A 486 SER LYS PRO SER SER THR LEU ASN VAL PRO SER ASN PRO SEQRES 28 A 486 ALA GLN SER ALA GLN SER GLN SER SER TYR ASN PRO PHE SEQRES 29 A 486 GLU ASP GLU ASP ASP THR GLY SER THR VAL SER GLU LYS SEQRES 30 A 486 ASP ASP THR LYS ALA LYS ASN VAL SER SER TYR GLU LYS SEQRES 31 A 486 THR GLN SER TYR PRO THR ASP TRP SER ASP ASP GLU SER SEQRES 32 A 486 ASN ASN PRO PHE SER SER THR ASP ALA ASN GLY ASP SER SEQRES 33 A 486 ASN PRO PHE ASP ASP ASP ALA THR SER GLY THR GLU VAL SEQRES 34 A 486 ARG VAL ARG ALA LEU TYR ASP TYR GLU GLY GLN GLU HIS SEQRES 35 A 486 ASP GLU LEU SER PHE LYS ALA GLY ASP GLU LEU THR LYS SEQRES 36 A 486 MET GLU ASP GLU ASP GLU GLN GLY TRP CYS LYS GLY ARG SEQRES 37 A 486 LEU ASP ASN GLY GLN VAL GLY LEU TYR PRO ALA ASN TYR SEQRES 38 A 486 VAL GLU ALA ILE GLN SEQRES 1 B 486 MET SER VAL THR TYR ASP ASP SER VAL GLY VAL GLU VAL SEQRES 2 B 486 SER SER ASP SER PHE TRP GLU VAL GLY ASN TYR LYS ARG SEQRES 3 B 486 THR VAL LYS ARG ILE ASP ASP GLY HIS ARG LEU CYS SER SEQRES 4 B 486 ASP LEU MET ASN CYS LEU HIS GLU ARG ALA ARG ILE GLU SEQRES 5 B 486 LYS ALA TYR ALA GLN GLN LEU THR GLU TRP ALA ARG ARG SEQRES 6 B 486 TRP ARG GLN LEU VAL GLU LYS GLY PRO GLN TYR GLY THR SEQRES 7 B 486 VAL GLU LYS ALA TRP MET ALA PHE MET SER GLU ALA GLU SEQRES 8 B 486 ARG VAL SER GLU LEU HIS LEU GLU VAL LYS ALA SER LEU SEQRES 9 B 486 MET ASN ASP ASP PHE GLU LYS ILE LYS ASN TRP GLN LYS SEQRES 10 B 486 GLU ALA PHE HIS LYS GLN MET MET GLY GLY PHE LYS GLU SEQRES 11 B 486 THR LYS GLU ALA GLU ASP GLY PHE ARG LYS ALA GLN LYS SEQRES 12 B 486 PRO TRP ALA LYS LYS LEU LYS GLU VAL GLU ALA ALA LYS SEQRES 13 B 486 LYS ALA HIS HIS ALA ALA CYS LYS GLU GLU LYS LEU ALA SEQRES 14 B 486 ILE SER ARG GLU ALA ASN SER LYS ALA ASP PRO SER LEU SEQRES 15 B 486 ASN PRO GLU GLN LEU LYS LYS LEU GLN ASP LYS ILE GLU SEQRES 16 B 486 LYS CYS LYS GLN ASP VAL LEU LYS THR LYS GLU LYS TYR SEQRES 17 B 486 GLU LYS SER LEU LYS GLU LEU ASP GLN GLY THR PRO GLN SEQRES 18 B 486 TYR MET GLU ASN MET GLU GLN VAL PHE GLU GLN CYS GLN SEQRES 19 B 486 GLN PHE GLU GLU LYS ARG LEU ARG PHE PHE ARG GLU VAL SEQRES 20 B 486 LEU LEU GLU VAL GLN LYS HIS LEU ASP LEU SER ASN VAL SEQRES 21 B 486 ALA GLY TYR LYS ALA ILE TYR HIS ASP LEU GLU GLN SER SEQRES 22 B 486 ILE ARG ALA ALA ASP ALA VAL GLU ASP LEU ARG TRP PHE SEQRES 23 B 486 ARG ALA ASN HIS GLY PRO GLY MET ALA MET ASN TRP PRO SEQRES 24 B 486 GLN PHE GLU GLU TRP SER ALA ASP LEU ASN ARG THR LEU SEQRES 25 B 486 SER ARG ARG GLU LYS LYS LYS ALA THR ASP GLY VAL THR SEQRES 26 B 486 LEU THR GLY ILE ASN GLN THR GLY ASP GLN SER LEU PRO SEQRES 27 B 486 SER LYS PRO SER SER THR LEU ASN VAL PRO SER ASN PRO SEQRES 28 B 486 ALA GLN SER ALA GLN SER GLN SER SER TYR ASN PRO PHE SEQRES 29 B 486 GLU ASP GLU ASP ASP THR GLY SER THR VAL SER GLU LYS SEQRES 30 B 486 ASP ASP THR LYS ALA LYS ASN VAL SER SER TYR GLU LYS SEQRES 31 B 486 THR GLN SER TYR PRO THR ASP TRP SER ASP ASP GLU SER SEQRES 32 B 486 ASN ASN PRO PHE SER SER THR ASP ALA ASN GLY ASP SER SEQRES 33 B 486 ASN PRO PHE ASP ASP ASP ALA THR SER GLY THR GLU VAL SEQRES 34 B 486 ARG VAL ARG ALA LEU TYR ASP TYR GLU GLY GLN GLU HIS SEQRES 35 B 486 ASP GLU LEU SER PHE LYS ALA GLY ASP GLU LEU THR LYS SEQRES 36 B 486 MET GLU ASP GLU ASP GLU GLN GLY TRP CYS LYS GLY ARG SEQRES 37 B 486 LEU ASP ASN GLY GLN VAL GLY LEU TYR PRO ALA ASN TYR SEQRES 38 B 486 VAL GLU ALA ILE GLN HET CA A 488 1 HET CA B 488 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *36(H2 O) HELIX 1 1 TYR A 25 LYS A 73 1 49 HELIX 2 2 GLY A 78 ASP A 108 1 31 HELIX 3 3 ASP A 108 PHE A 121 1 14 HELIX 4 4 PHE A 129 ASP A 180 1 52 HELIX 5 5 PRO A 185 GLN A 218 1 34 HELIX 6 6 THR A 220 ASP A 257 1 38 HELIX 7 7 VAL A 261 ALA A 277 1 17 HELIX 8 8 ASP A 279 GLY A 292 1 14 HELIX 9 9 TYR B 25 GLY B 74 1 50 HELIX 10 10 TYR B 77 ASP B 108 1 32 HELIX 11 11 ASP B 108 PHE B 121 1 14 HELIX 12 12 PHE B 129 HIS B 161 1 33 HELIX 13 13 GLU B 167 ASP B 180 1 14 HELIX 14 14 GLU B 186 GLN B 192 1 7 HELIX 15 15 GLU B 196 GLU B 210 1 15 HELIX 16 16 LYS B 211 GLY B 219 1 9 HELIX 17 17 THR B 220 ASP B 257 1 38 HELIX 18 18 VAL B 261 ALA B 277 1 17 HELIX 19 19 ASP B 279 HIS B 291 1 13 LINK O VAL A 71 CA CA A 488 1555 1555 2.80 LINK O GLU A 72 CA CA A 488 1555 1555 2.82 LINK O GLY A 74 CA CA A 488 1555 1555 2.92 LINK O GLN A 76 CA CA A 488 1555 1555 2.78 LINK O VAL B 71 CA CA B 488 1555 1555 2.85 LINK O GLU B 72 CA CA B 488 1555 1555 2.75 LINK O GLY B 74 CA CA B 488 1555 1555 2.97 LINK O GLN B 76 CA CA B 488 1555 1555 2.63 CISPEP 1 SER A 182 LEU A 183 0 -0.78 CISPEP 2 LEU A 183 ASN A 184 0 -1.48 CISPEP 3 MET B 126 GLY B 127 0 2.68 SITE 1 AC1 6 VAL A 71 GLU A 72 GLY A 74 GLN A 76 SITE 2 AC1 6 TYR A 77 GLU A 81 SITE 1 AC2 6 VAL B 71 GLU B 72 GLY B 74 GLN B 76 SITE 2 AC2 6 TYR B 77 GLU B 81 CRYST1 31.295 88.395 357.722 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002795 0.00000