data_3HBK # _entry.id 3HBK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HBK pdb_00003hbk 10.2210/pdb3hbk/pdb RCSB RCSB052932 ? ? WWPDB D_1000052932 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 394752 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3HBK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of putative glycosyl hydrolase, was Domain of Unknown Function (DUF1080) (YP_001302580.1) from Parabacteroides distasonis ATCC 8503 at 2.36 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3HBK _cell.length_a 61.009 _cell.length_b 61.009 _cell.length_c 167.332 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HBK _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative glycosyl hydrolase' 27219.963 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GTEETAKVVP(MSE)AVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGW(MSE)VKDGELIVQKSDGSES TNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLK KSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGD EVAFRNIKVKELK ; _entity_poly.pdbx_seq_one_letter_code_can ;GTEETAKVVPMAVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVT EGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFN GVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIK VKELK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 394752 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 GLU n 1 4 GLU n 1 5 THR n 1 6 ALA n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 PRO n 1 11 MSE n 1 12 ALA n 1 13 VAL n 1 14 ILE n 1 15 THR n 1 16 PRO n 1 17 ALA n 1 18 ILE n 1 19 ASN n 1 20 GLN n 1 21 LEU n 1 22 THR n 1 23 ASP n 1 24 GLN n 1 25 GLU n 1 26 LYS n 1 27 ALA n 1 28 GLU n 1 29 GLY n 1 30 TRP n 1 31 ALA n 1 32 LEU n 1 33 LEU n 1 34 PHE n 1 35 ASP n 1 36 GLY n 1 37 LYS n 1 38 THR n 1 39 THR n 1 40 LYS n 1 41 GLY n 1 42 TRP n 1 43 ARG n 1 44 GLY n 1 45 ALA n 1 46 HIS n 1 47 LYS n 1 48 ASP n 1 49 ALA n 1 50 PHE n 1 51 PRO n 1 52 ASP n 1 53 HIS n 1 54 GLY n 1 55 TRP n 1 56 MSE n 1 57 VAL n 1 58 LYS n 1 59 ASP n 1 60 GLY n 1 61 GLU n 1 62 LEU n 1 63 ILE n 1 64 VAL n 1 65 GLN n 1 66 LYS n 1 67 SER n 1 68 ASP n 1 69 GLY n 1 70 SER n 1 71 GLU n 1 72 SER n 1 73 THR n 1 74 ASN n 1 75 GLY n 1 76 GLY n 1 77 ASP n 1 78 ILE n 1 79 VAL n 1 80 THR n 1 81 GLU n 1 82 GLY n 1 83 GLU n 1 84 TYR n 1 85 SER n 1 86 ALA n 1 87 PHE n 1 88 GLU n 1 89 PHE n 1 90 SER n 1 91 VAL n 1 92 ASP n 1 93 PHE n 1 94 LYS n 1 95 ILE n 1 96 THR n 1 97 GLU n 1 98 GLY n 1 99 ALA n 1 100 ASN n 1 101 SER n 1 102 GLY n 1 103 ILE n 1 104 LYS n 1 105 TYR n 1 106 PHE n 1 107 VAL n 1 108 THR n 1 109 GLU n 1 110 GLN n 1 111 GLU n 1 112 LYS n 1 113 GLN n 1 114 LYS n 1 115 GLY n 1 116 SER n 1 117 ALA n 1 118 TYR n 1 119 GLY n 1 120 LEU n 1 121 GLU n 1 122 PHE n 1 123 GLN n 1 124 LEU n 1 125 LEU n 1 126 ASP n 1 127 ASP n 1 128 ALA n 1 129 LYS n 1 130 HIS n 1 131 PRO n 1 132 ASP n 1 133 ALA n 1 134 LYS n 1 135 LEU n 1 136 TYR n 1 137 THR n 1 138 THR n 1 139 PHE n 1 140 PRO n 1 141 GLY n 1 142 SER n 1 143 ARG n 1 144 THR n 1 145 LEU n 1 146 GLY n 1 147 SER n 1 148 LEU n 1 149 TYR n 1 150 ASP n 1 151 LEU n 1 152 LYS n 1 153 LYS n 1 154 SER n 1 155 GLU n 1 156 ASN n 1 157 ILE n 1 158 HIS n 1 159 PHE n 1 160 ASN n 1 161 GLY n 1 162 VAL n 1 163 GLY n 1 164 GLU n 1 165 TRP n 1 166 ASN n 1 167 THR n 1 168 ALA n 1 169 VAL n 1 170 VAL n 1 171 LYS n 1 172 VAL n 1 173 PHE n 1 174 PRO n 1 175 ASN n 1 176 ASN n 1 177 HIS n 1 178 VAL n 1 179 GLU n 1 180 HIS n 1 181 TRP n 1 182 LEU n 1 183 ASN n 1 184 GLY n 1 185 VAL n 1 186 LYS n 1 187 VAL n 1 188 LEU n 1 189 GLU n 1 190 TYR n 1 191 GLU n 1 192 ARG n 1 193 GLY n 1 194 SER n 1 195 LYS n 1 196 GLU n 1 197 PHE n 1 198 ARG n 1 199 ASP n 1 200 LEU n 1 201 VAL n 1 202 LYS n 1 203 GLY n 1 204 SER n 1 205 LYS n 1 206 TYR n 1 207 ALA n 1 208 ASP n 1 209 PRO n 1 210 SER n 1 211 TYR n 1 212 ASN n 1 213 ALA n 1 214 GLY n 1 215 GLY n 1 216 ALA n 1 217 PHE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 PRO n 1 222 LYS n 1 223 GLY n 1 224 HIS n 1 225 ILE n 1 226 LEU n 1 227 LEU n 1 228 GLN n 1 229 ASP n 1 230 HIS n 1 231 GLY n 1 232 ASP n 1 233 GLU n 1 234 VAL n 1 235 ALA n 1 236 PHE n 1 237 ARG n 1 238 ASN n 1 239 ILE n 1 240 LYS n 1 241 VAL n 1 242 LYS n 1 243 GLU n 1 244 LEU n 1 245 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BDI_1195, YP_001302580.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parabacteroides distasonis ATCC 8503' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435591 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8503 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6LB94_PARD8 _struct_ref.pdbx_db_accession A6LB94 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TEETAKVVPMAVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVTE GEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNG VGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKV KELK ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HBK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6LB94 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 269 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 269 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HBK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A6LB94 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3HBK # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M Li2SO4, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-03-19 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97932 1.0 3 0.97915 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97932,0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3HBK _reflns.d_resolution_high 2.36 _reflns.d_resolution_low 29.336 _reflns.number_obs 13756 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.percent_possible_obs 99.100 _reflns.B_iso_Wilson_estimate 60.809 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.770 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.36 2.44 8328 ? 2216 0.951 1.4 ? ? ? ? ? 92.80 1 1 2.44 2.54 9886 ? 2560 0.744 1.9 ? ? ? ? ? 99.80 2 1 2.54 2.66 9995 ? 2583 0.520 2.6 ? ? ? ? ? 100.00 3 1 2.66 2.80 9560 ? 2474 0.375 3.7 ? ? ? ? ? 99.90 4 1 2.80 2.97 9363 ? 2415 0.244 5.6 ? ? ? ? ? 99.70 5 1 2.97 3.20 9680 ? 2508 0.134 9.7 ? ? ? ? ? 99.90 6 1 3.20 3.52 9598 ? 2475 0.076 16.5 ? ? ? ? ? 100.00 7 1 3.52 4.03 9680 ? 2505 0.045 25.7 ? ? ? ? ? 99.80 8 1 4.03 5.06 9667 ? 2497 0.034 32.7 ? ? ? ? ? 99.80 9 1 5.06 29.336 9779 ? 2533 0.031 36.5 ? ? ? ? ? 99.20 10 1 # _refine.entry_id 3HBK _refine.ls_d_res_high 2.360 _refine.ls_d_res_low 29.336 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.710 _refine.ls_number_reflns_obs 13695 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. SULFATE (SO4) AND ETHYLENE GLYCOL (EDO) HAVE BEEN MODELED FROM CRYSTALLIZATION/CRYO CONDITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_R_work 0.198 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.245 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 685 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 50.313 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.210 _refine.aniso_B[2][2] -0.210 _refine.aniso_B[3][3] 0.420 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.285 _refine.pdbx_overall_ESU_R_Free 0.226 _refine.overall_SU_ML 0.175 _refine.overall_SU_B 14.445 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 96.13 _refine.B_iso_min 24.70 _refine.occupancy_max 1.00 _refine.occupancy_min 0.37 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1781 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1884 _refine_hist.d_res_high 2.360 _refine_hist.d_res_low 29.336 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1885 0.011 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1255 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2555 1.651 1.938 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3058 0.994 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 242 3.860 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 93 32.272 24.946 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 294 10.911 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 6 10.164 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 263 0.099 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2160 0.004 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 393 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 300 0.175 0.300 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1268 0.177 0.300 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 872 0.176 0.500 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 918 0.088 0.500 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 157 0.197 0.500 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 3 0.192 0.300 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 18 0.134 0.300 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 2 0.218 0.500 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1264 1.479 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 486 0.274 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1840 2.384 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 820 4.258 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 709 5.131 11.000 ? ? # _refine_ls_shell.d_res_high 2.360 _refine_ls_shell.d_res_low 2.422 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.750 _refine_ls_shell.number_reflns_R_work 908 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.311 _refine_ls_shell.R_factor_R_free 0.473 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 956 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HBK _struct.title ;Crystal structure of putative glycosyl hydrolase, was Domain of Unknown Function (DUF1080) (YP_001302580.1) from Parabacteroides distasonis ATCC 8503 at 2.36 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001302580.1, putative glycosyl hydrolase, was Domain of Unknown Function (DUF1080), Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3HBK # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 23 ? GLU A 28 ? ASP A 47 GLU A 52 1 ? 6 HELX_P HELX_P2 2 SER A 70 ? ASN A 74 ? SER A 94 ASN A 98 5 ? 5 HELX_P HELX_P3 3 SER A 194 ? GLY A 203 ? SER A 218 GLY A 227 1 ? 10 HELX_P HELX_P4 4 SER A 204 ? ASN A 212 ? SER A 228 ASN A 236 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TRP 55 C ? ? ? 1_555 A MSE 56 N ? ? A TRP 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 56 C ? ? ? 1_555 A VAL 57 N ? ? A MSE 80 A VAL 81 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 30 ? LEU A 32 ? TRP A 54 LEU A 56 A 2 VAL A 234 ? GLU A 243 ? VAL A 258 GLU A 267 A 3 GLU A 61 ? VAL A 64 ? GLU A 85 VAL A 88 A 4 TRP A 55 ? LYS A 58 ? TRP A 79 LYS A 82 B 1 TRP A 30 ? LEU A 32 ? TRP A 54 LEU A 56 B 2 VAL A 234 ? GLU A 243 ? VAL A 258 GLU A 267 B 3 PHE A 87 ? ILE A 95 ? PHE A 111 ILE A 119 B 4 TRP A 165 ? VAL A 172 ? TRP A 189 VAL A 196 B 5 HIS A 177 ? LEU A 182 ? HIS A 201 LEU A 206 B 6 VAL A 185 ? GLU A 191 ? VAL A 209 GLU A 215 C 1 TRP A 42 ? GLY A 44 ? TRP A 66 GLY A 68 C 2 ILE A 78 ? THR A 80 ? ILE A 102 THR A 104 C 3 HIS A 224 ? LEU A 227 ? HIS A 248 LEU A 251 C 4 ASN A 100 ? VAL A 107 ? ASN A 124 VAL A 131 C 5 LEU A 120 ? LEU A 125 ? LEU A 144 LEU A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 31 ? N ALA A 55 O VAL A 241 ? O VAL A 265 A 2 3 O VAL A 234 ? O VAL A 258 N VAL A 64 ? N VAL A 88 A 3 4 O ILE A 63 ? O ILE A 87 N MSE A 56 ? N MSE A 80 B 1 2 N ALA A 31 ? N ALA A 55 O VAL A 241 ? O VAL A 265 B 2 3 O ARG A 237 ? O ARG A 261 N ASP A 92 ? N ASP A 116 B 3 4 N PHE A 89 ? N PHE A 113 O VAL A 170 ? O VAL A 194 B 4 5 N LYS A 171 ? N LYS A 195 O GLU A 179 ? O GLU A 203 B 5 6 N VAL A 178 ? N VAL A 202 O TYR A 190 ? O TYR A 214 C 1 2 N ARG A 43 ? N ARG A 67 O VAL A 79 ? O VAL A 103 C 2 3 N ILE A 78 ? N ILE A 102 O LEU A 227 ? O LEU A 251 C 3 4 O HIS A 224 ? O HIS A 248 N VAL A 107 ? N VAL A 131 C 4 5 N ILE A 103 ? N ILE A 127 O PHE A 122 ? O PHE A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1 ? 4 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software A SO4 2 ? 6 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software A EDO 3 ? 6 'BINDING SITE FOR RESIDUE EDO A 3' AC4 Software A EDO 4 ? 3 'BINDING SITE FOR RESIDUE EDO A 4' AC5 Software A EDO 5 ? 1 'BINDING SITE FOR RESIDUE EDO A 5' AC6 Software A EDO 6 ? 3 'BINDING SITE FOR RESIDUE EDO A 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 176 ? ASN A 200 . ? 1_555 ? 2 AC1 4 ARG A 192 ? ARG A 216 . ? 1_555 ? 3 AC1 4 GLU A 219 ? GLU A 243 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 328 . ? 1_555 ? 5 AC2 6 LYS A 104 ? LYS A 128 . ? 1_555 ? 6 AC2 6 TYR A 118 ? TYR A 142 . ? 1_555 ? 7 AC2 6 LYS A 205 ? LYS A 229 . ? 1_555 ? 8 AC2 6 TYR A 206 ? TYR A 230 . ? 1_555 ? 9 AC2 6 TYR A 211 ? TYR A 235 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 272 . ? 1_555 ? 11 AC3 6 ASN A 100 ? ASN A 124 . ? 1_555 ? 12 AC3 6 SER A 101 ? SER A 125 . ? 1_555 ? 13 AC3 6 GLU A 121 ? GLU A 145 . ? 1_555 ? 14 AC3 6 GLN A 123 ? GLN A 147 . ? 1_555 ? 15 AC3 6 TYR A 149 ? TYR A 173 . ? 1_555 ? 16 AC3 6 GLN A 228 ? GLN A 252 . ? 1_555 ? 17 AC4 3 LYS A 47 ? LYS A 71 . ? 1_555 ? 18 AC4 3 ASP A 48 ? ASP A 72 . ? 1_555 ? 19 AC4 3 ALA A 49 ? ALA A 73 . ? 1_555 ? 20 AC5 1 ASN A 175 ? ASN A 199 . ? 1_555 ? 21 AC6 3 HIS A 177 ? HIS A 201 . ? 1_555 ? 22 AC6 3 GLU A 191 ? GLU A 215 . ? 1_555 ? 23 AC6 3 HOH H . ? HOH A 309 . ? 1_555 ? # _atom_sites.entry_id 3HBK _atom_sites.fract_transf_matrix[1][1] 0.016391 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005976 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 THR 2 26 ? ? ? A . n A 1 3 GLU 3 27 ? ? ? A . n A 1 4 GLU 4 28 ? ? ? A . n A 1 5 THR 5 29 ? ? ? A . n A 1 6 ALA 6 30 ? ? ? A . n A 1 7 LYS 7 31 ? ? ? A . n A 1 8 VAL 8 32 ? ? ? A . n A 1 9 VAL 9 33 ? ? ? A . n A 1 10 PRO 10 34 ? ? ? A . n A 1 11 MSE 11 35 ? ? ? A . n A 1 12 ALA 12 36 ? ? ? A . n A 1 13 VAL 13 37 ? ? ? A . n A 1 14 ILE 14 38 ? ? ? A . n A 1 15 THR 15 39 39 THR THR A . n A 1 16 PRO 16 40 40 PRO PRO A . n A 1 17 ALA 17 41 41 ALA ALA A . n A 1 18 ILE 18 42 42 ILE ILE A . n A 1 19 ASN 19 43 43 ASN ASN A . n A 1 20 GLN 20 44 44 GLN GLN A . n A 1 21 LEU 21 45 45 LEU LEU A . n A 1 22 THR 22 46 46 THR THR A . n A 1 23 ASP 23 47 47 ASP ASP A . n A 1 24 GLN 24 48 48 GLN GLN A . n A 1 25 GLU 25 49 49 GLU GLU A . n A 1 26 LYS 26 50 50 LYS LYS A . n A 1 27 ALA 27 51 51 ALA ALA A . n A 1 28 GLU 28 52 52 GLU GLU A . n A 1 29 GLY 29 53 53 GLY GLY A . n A 1 30 TRP 30 54 54 TRP TRP A . n A 1 31 ALA 31 55 55 ALA ALA A . n A 1 32 LEU 32 56 56 LEU LEU A . n A 1 33 LEU 33 57 57 LEU LEU A . n A 1 34 PHE 34 58 58 PHE PHE A . n A 1 35 ASP 35 59 59 ASP ASP A . n A 1 36 GLY 36 60 60 GLY GLY A . n A 1 37 LYS 37 61 61 LYS LYS A . n A 1 38 THR 38 62 62 THR THR A . n A 1 39 THR 39 63 63 THR THR A . n A 1 40 LYS 40 64 64 LYS LYS A . n A 1 41 GLY 41 65 65 GLY GLY A . n A 1 42 TRP 42 66 66 TRP TRP A . n A 1 43 ARG 43 67 67 ARG ARG A . n A 1 44 GLY 44 68 68 GLY GLY A . n A 1 45 ALA 45 69 69 ALA ALA A . n A 1 46 HIS 46 70 70 HIS HIS A . n A 1 47 LYS 47 71 71 LYS LYS A . n A 1 48 ASP 48 72 72 ASP ASP A . n A 1 49 ALA 49 73 73 ALA ALA A . n A 1 50 PHE 50 74 74 PHE PHE A . n A 1 51 PRO 51 75 75 PRO PRO A . n A 1 52 ASP 52 76 76 ASP ASP A . n A 1 53 HIS 53 77 77 HIS HIS A . n A 1 54 GLY 54 78 78 GLY GLY A . n A 1 55 TRP 55 79 79 TRP TRP A . n A 1 56 MSE 56 80 80 MSE MSE A . n A 1 57 VAL 57 81 81 VAL VAL A . n A 1 58 LYS 58 82 82 LYS LYS A . n A 1 59 ASP 59 83 83 ASP ASP A . n A 1 60 GLY 60 84 84 GLY GLY A . n A 1 61 GLU 61 85 85 GLU GLU A . n A 1 62 LEU 62 86 86 LEU LEU A . n A 1 63 ILE 63 87 87 ILE ILE A . n A 1 64 VAL 64 88 88 VAL VAL A . n A 1 65 GLN 65 89 89 GLN GLN A . n A 1 66 LYS 66 90 90 LYS LYS A . n A 1 67 SER 67 91 91 SER SER A . n A 1 68 ASP 68 92 92 ASP ASP A . n A 1 69 GLY 69 93 93 GLY GLY A . n A 1 70 SER 70 94 94 SER SER A . n A 1 71 GLU 71 95 95 GLU GLU A . n A 1 72 SER 72 96 96 SER SER A . n A 1 73 THR 73 97 97 THR THR A . n A 1 74 ASN 74 98 98 ASN ASN A . n A 1 75 GLY 75 99 99 GLY GLY A . n A 1 76 GLY 76 100 100 GLY GLY A . n A 1 77 ASP 77 101 101 ASP ASP A . n A 1 78 ILE 78 102 102 ILE ILE A . n A 1 79 VAL 79 103 103 VAL VAL A . n A 1 80 THR 80 104 104 THR THR A . n A 1 81 GLU 81 105 105 GLU GLU A . n A 1 82 GLY 82 106 106 GLY GLY A . n A 1 83 GLU 83 107 107 GLU GLU A . n A 1 84 TYR 84 108 108 TYR TYR A . n A 1 85 SER 85 109 109 SER SER A . n A 1 86 ALA 86 110 110 ALA ALA A . n A 1 87 PHE 87 111 111 PHE PHE A . n A 1 88 GLU 88 112 112 GLU GLU A . n A 1 89 PHE 89 113 113 PHE PHE A . n A 1 90 SER 90 114 114 SER SER A . n A 1 91 VAL 91 115 115 VAL VAL A . n A 1 92 ASP 92 116 116 ASP ASP A . n A 1 93 PHE 93 117 117 PHE PHE A . n A 1 94 LYS 94 118 118 LYS LYS A . n A 1 95 ILE 95 119 119 ILE ILE A . n A 1 96 THR 96 120 120 THR THR A . n A 1 97 GLU 97 121 121 GLU GLU A . n A 1 98 GLY 98 122 122 GLY GLY A . n A 1 99 ALA 99 123 123 ALA ALA A . n A 1 100 ASN 100 124 124 ASN ASN A . n A 1 101 SER 101 125 125 SER SER A . n A 1 102 GLY 102 126 126 GLY GLY A . n A 1 103 ILE 103 127 127 ILE ILE A . n A 1 104 LYS 104 128 128 LYS LYS A . n A 1 105 TYR 105 129 129 TYR TYR A . n A 1 106 PHE 106 130 130 PHE PHE A . n A 1 107 VAL 107 131 131 VAL VAL A . n A 1 108 THR 108 132 132 THR THR A . n A 1 109 GLU 109 133 133 GLU GLU A . n A 1 110 GLN 110 134 134 GLN GLN A . n A 1 111 GLU 111 135 135 GLU GLU A . n A 1 112 LYS 112 136 136 LYS LYS A . n A 1 113 GLN 113 137 137 GLN GLN A . n A 1 114 LYS 114 138 138 LYS LYS A . n A 1 115 GLY 115 139 139 GLY GLY A . n A 1 116 SER 116 140 140 SER SER A . n A 1 117 ALA 117 141 141 ALA ALA A . n A 1 118 TYR 118 142 142 TYR TYR A . n A 1 119 GLY 119 143 143 GLY GLY A . n A 1 120 LEU 120 144 144 LEU LEU A . n A 1 121 GLU 121 145 145 GLU GLU A . n A 1 122 PHE 122 146 146 PHE PHE A . n A 1 123 GLN 123 147 147 GLN GLN A . n A 1 124 LEU 124 148 148 LEU LEU A . n A 1 125 LEU 125 149 149 LEU LEU A . n A 1 126 ASP 126 150 150 ASP ASP A . n A 1 127 ASP 127 151 151 ASP ASP A . n A 1 128 ALA 128 152 152 ALA ALA A . n A 1 129 LYS 129 153 153 LYS LYS A . n A 1 130 HIS 130 154 154 HIS HIS A . n A 1 131 PRO 131 155 155 PRO PRO A . n A 1 132 ASP 132 156 156 ASP ASP A . n A 1 133 ALA 133 157 157 ALA ALA A . n A 1 134 LYS 134 158 158 LYS LYS A . n A 1 135 LEU 135 159 159 LEU LEU A . n A 1 136 TYR 136 160 160 TYR TYR A . n A 1 137 THR 137 161 161 THR THR A . n A 1 138 THR 138 162 162 THR THR A . n A 1 139 PHE 139 163 163 PHE PHE A . n A 1 140 PRO 140 164 164 PRO PRO A . n A 1 141 GLY 141 165 165 GLY GLY A . n A 1 142 SER 142 166 166 SER SER A . n A 1 143 ARG 143 167 167 ARG ARG A . n A 1 144 THR 144 168 168 THR THR A . n A 1 145 LEU 145 169 169 LEU LEU A . n A 1 146 GLY 146 170 170 GLY GLY A . n A 1 147 SER 147 171 171 SER SER A . n A 1 148 LEU 148 172 172 LEU LEU A . n A 1 149 TYR 149 173 173 TYR TYR A . n A 1 150 ASP 150 174 174 ASP ASP A . n A 1 151 LEU 151 175 175 LEU LEU A . n A 1 152 LYS 152 176 176 LYS LYS A . n A 1 153 LYS 153 177 177 LYS LYS A . n A 1 154 SER 154 178 178 SER SER A . n A 1 155 GLU 155 179 179 GLU GLU A . n A 1 156 ASN 156 180 180 ASN ASN A . n A 1 157 ILE 157 181 181 ILE ILE A . n A 1 158 HIS 158 182 182 HIS HIS A . n A 1 159 PHE 159 183 183 PHE PHE A . n A 1 160 ASN 160 184 184 ASN ASN A . n A 1 161 GLY 161 185 185 GLY GLY A . n A 1 162 VAL 162 186 186 VAL VAL A . n A 1 163 GLY 163 187 187 GLY GLY A . n A 1 164 GLU 164 188 188 GLU GLU A . n A 1 165 TRP 165 189 189 TRP TRP A . n A 1 166 ASN 166 190 190 ASN ASN A . n A 1 167 THR 167 191 191 THR THR A . n A 1 168 ALA 168 192 192 ALA ALA A . n A 1 169 VAL 169 193 193 VAL VAL A . n A 1 170 VAL 170 194 194 VAL VAL A . n A 1 171 LYS 171 195 195 LYS LYS A . n A 1 172 VAL 172 196 196 VAL VAL A . n A 1 173 PHE 173 197 197 PHE PHE A . n A 1 174 PRO 174 198 198 PRO PRO A . n A 1 175 ASN 175 199 199 ASN ASN A . n A 1 176 ASN 176 200 200 ASN ASN A . n A 1 177 HIS 177 201 201 HIS HIS A . n A 1 178 VAL 178 202 202 VAL VAL A . n A 1 179 GLU 179 203 203 GLU GLU A . n A 1 180 HIS 180 204 204 HIS HIS A . n A 1 181 TRP 181 205 205 TRP TRP A . n A 1 182 LEU 182 206 206 LEU LEU A . n A 1 183 ASN 183 207 207 ASN ASN A . n A 1 184 GLY 184 208 208 GLY GLY A . n A 1 185 VAL 185 209 209 VAL VAL A . n A 1 186 LYS 186 210 210 LYS LYS A . n A 1 187 VAL 187 211 211 VAL VAL A . n A 1 188 LEU 188 212 212 LEU LEU A . n A 1 189 GLU 189 213 213 GLU GLU A . n A 1 190 TYR 190 214 214 TYR TYR A . n A 1 191 GLU 191 215 215 GLU GLU A . n A 1 192 ARG 192 216 216 ARG ARG A . n A 1 193 GLY 193 217 217 GLY GLY A . n A 1 194 SER 194 218 218 SER SER A . n A 1 195 LYS 195 219 219 LYS LYS A . n A 1 196 GLU 196 220 220 GLU GLU A . n A 1 197 PHE 197 221 221 PHE PHE A . n A 1 198 ARG 198 222 222 ARG ARG A . n A 1 199 ASP 199 223 223 ASP ASP A . n A 1 200 LEU 200 224 224 LEU LEU A . n A 1 201 VAL 201 225 225 VAL VAL A . n A 1 202 LYS 202 226 226 LYS LYS A . n A 1 203 GLY 203 227 227 GLY GLY A . n A 1 204 SER 204 228 228 SER SER A . n A 1 205 LYS 205 229 229 LYS LYS A . n A 1 206 TYR 206 230 230 TYR TYR A . n A 1 207 ALA 207 231 231 ALA ALA A . n A 1 208 ASP 208 232 232 ASP ASP A . n A 1 209 PRO 209 233 233 PRO PRO A . n A 1 210 SER 210 234 234 SER SER A . n A 1 211 TYR 211 235 235 TYR TYR A . n A 1 212 ASN 212 236 236 ASN ASN A . n A 1 213 ALA 213 237 237 ALA ALA A . n A 1 214 GLY 214 238 238 GLY GLY A . n A 1 215 GLY 215 239 239 GLY GLY A . n A 1 216 ALA 216 240 240 ALA ALA A . n A 1 217 PHE 217 241 241 PHE PHE A . n A 1 218 GLY 218 242 242 GLY GLY A . n A 1 219 GLU 219 243 243 GLU GLU A . n A 1 220 ALA 220 244 244 ALA ALA A . n A 1 221 PRO 221 245 245 PRO PRO A . n A 1 222 LYS 222 246 246 LYS LYS A . n A 1 223 GLY 223 247 247 GLY GLY A . n A 1 224 HIS 224 248 248 HIS HIS A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 LEU 226 250 250 LEU LEU A . n A 1 227 LEU 227 251 251 LEU LEU A . n A 1 228 GLN 228 252 252 GLN GLN A . n A 1 229 ASP 229 253 253 ASP ASP A . n A 1 230 HIS 230 254 254 HIS HIS A . n A 1 231 GLY 231 255 255 GLY GLY A . n A 1 232 ASP 232 256 256 ASP ASP A . n A 1 233 GLU 233 257 257 GLU GLU A . n A 1 234 VAL 234 258 258 VAL VAL A . n A 1 235 ALA 235 259 259 ALA ALA A . n A 1 236 PHE 236 260 260 PHE PHE A . n A 1 237 ARG 237 261 261 ARG ARG A . n A 1 238 ASN 238 262 262 ASN ASN A . n A 1 239 ILE 239 263 263 ILE ILE A . n A 1 240 LYS 240 264 264 LYS LYS A . n A 1 241 VAL 241 265 265 VAL VAL A . n A 1 242 LYS 242 266 266 LYS LYS A . n A 1 243 GLU 243 267 267 GLU GLU A . n A 1 244 LEU 244 268 268 LEU LEU A . n A 1 245 LYS 245 269 269 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 3 EDO 1 3 3 EDO EDO A . E 3 EDO 1 4 4 EDO EDO A . F 3 EDO 1 5 5 EDO EDO A . G 3 EDO 1 6 6 EDO EDO A . H 4 HOH 1 7 7 HOH HOH A . H 4 HOH 2 8 8 HOH HOH A . H 4 HOH 3 9 9 HOH HOH A . H 4 HOH 4 10 10 HOH HOH A . H 4 HOH 5 11 11 HOH HOH A . H 4 HOH 6 12 12 HOH HOH A . H 4 HOH 7 13 13 HOH HOH A . H 4 HOH 8 14 14 HOH HOH A . H 4 HOH 9 15 15 HOH HOH A . H 4 HOH 10 16 16 HOH HOH A . H 4 HOH 11 17 17 HOH HOH A . H 4 HOH 12 18 18 HOH HOH A . H 4 HOH 13 19 19 HOH HOH A . H 4 HOH 14 20 20 HOH HOH A . H 4 HOH 15 21 21 HOH HOH A . H 4 HOH 16 22 22 HOH HOH A . H 4 HOH 17 23 23 HOH HOH A . H 4 HOH 18 24 24 HOH HOH A . H 4 HOH 19 270 25 HOH HOH A . H 4 HOH 20 271 26 HOH HOH A . H 4 HOH 21 272 27 HOH HOH A . H 4 HOH 22 273 28 HOH HOH A . H 4 HOH 23 274 29 HOH HOH A . H 4 HOH 24 275 30 HOH HOH A . H 4 HOH 25 276 31 HOH HOH A . H 4 HOH 26 277 32 HOH HOH A . H 4 HOH 27 278 33 HOH HOH A . H 4 HOH 28 279 34 HOH HOH A . H 4 HOH 29 280 35 HOH HOH A . H 4 HOH 30 281 36 HOH HOH A . H 4 HOH 31 282 37 HOH HOH A . H 4 HOH 32 283 38 HOH HOH A . H 4 HOH 33 284 39 HOH HOH A . H 4 HOH 34 285 40 HOH HOH A . H 4 HOH 35 286 41 HOH HOH A . H 4 HOH 36 287 42 HOH HOH A . H 4 HOH 37 288 43 HOH HOH A . H 4 HOH 38 289 44 HOH HOH A . H 4 HOH 39 290 45 HOH HOH A . H 4 HOH 40 291 46 HOH HOH A . H 4 HOH 41 292 47 HOH HOH A . H 4 HOH 42 293 48 HOH HOH A . H 4 HOH 43 294 49 HOH HOH A . H 4 HOH 44 295 50 HOH HOH A . H 4 HOH 45 296 51 HOH HOH A . H 4 HOH 46 297 52 HOH HOH A . H 4 HOH 47 298 53 HOH HOH A . H 4 HOH 48 299 54 HOH HOH A . H 4 HOH 49 300 55 HOH HOH A . H 4 HOH 50 301 56 HOH HOH A . H 4 HOH 51 302 57 HOH HOH A . H 4 HOH 52 303 58 HOH HOH A . H 4 HOH 53 304 59 HOH HOH A . H 4 HOH 54 305 60 HOH HOH A . H 4 HOH 55 306 61 HOH HOH A . H 4 HOH 56 307 62 HOH HOH A . H 4 HOH 57 308 63 HOH HOH A . H 4 HOH 58 309 64 HOH HOH A . H 4 HOH 59 310 65 HOH HOH A . H 4 HOH 60 311 66 HOH HOH A . H 4 HOH 61 312 67 HOH HOH A . H 4 HOH 62 313 68 HOH HOH A . H 4 HOH 63 314 69 HOH HOH A . H 4 HOH 64 315 70 HOH HOH A . H 4 HOH 65 316 71 HOH HOH A . H 4 HOH 66 317 72 HOH HOH A . H 4 HOH 67 318 73 HOH HOH A . H 4 HOH 68 319 74 HOH HOH A . H 4 HOH 69 320 75 HOH HOH A . H 4 HOH 70 321 76 HOH HOH A . H 4 HOH 71 322 77 HOH HOH A . H 4 HOH 72 323 78 HOH HOH A . H 4 HOH 73 324 79 HOH HOH A . H 4 HOH 74 325 80 HOH HOH A . H 4 HOH 75 326 81 HOH HOH A . H 4 HOH 76 327 82 HOH HOH A . H 4 HOH 77 328 83 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 56 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 80 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.7430 _pdbx_refine_tls.origin_y 11.3120 _pdbx_refine_tls.origin_z 73.6260 _pdbx_refine_tls.T[1][1] -0.1238 _pdbx_refine_tls.T[2][2] -0.1998 _pdbx_refine_tls.T[3][3] -0.2080 _pdbx_refine_tls.T[1][2] 0.0130 _pdbx_refine_tls.T[1][3] -0.0148 _pdbx_refine_tls.T[2][3] 0.0386 _pdbx_refine_tls.L[1][1] 4.8605 _pdbx_refine_tls.L[2][2] 1.3649 _pdbx_refine_tls.L[3][3] 4.5369 _pdbx_refine_tls.L[1][2] -1.2036 _pdbx_refine_tls.L[1][3] 1.7718 _pdbx_refine_tls.L[2][3] -1.0059 _pdbx_refine_tls.S[1][1] -0.0094 _pdbx_refine_tls.S[2][2] 0.0506 _pdbx_refine_tls.S[3][3] -0.0412 _pdbx_refine_tls.S[1][2] 0.0379 _pdbx_refine_tls.S[1][3] 0.0950 _pdbx_refine_tls.S[2][3] 0.0716 _pdbx_refine_tls.S[2][1] 0.1167 _pdbx_refine_tls.S[3][1] 0.2296 _pdbx_refine_tls.S[3][2] -0.0312 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_seq_id 39 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 269 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3HBK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE SEQUENCE THIS CONSTRUCT (RESIDUE 29-268) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 47 ? ? 63.88 -33.86 2 1 SER A 125 ? ? -150.60 -157.03 3 1 GLU A 135 ? ? 177.90 158.29 4 1 TYR A 160 ? ? -175.24 147.53 5 1 THR A 162 ? ? -139.18 -34.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 61 ? CE ? A LYS 37 CE 2 1 Y 1 A LYS 61 ? NZ ? A LYS 37 NZ 3 1 Y 1 A LYS 71 ? NZ ? A LYS 47 NZ 4 1 Y 1 A LYS 82 ? CE ? A LYS 58 CE 5 1 Y 1 A LYS 82 ? NZ ? A LYS 58 NZ 6 1 Y 1 A LYS 90 ? NZ ? A LYS 66 NZ 7 1 Y 1 A GLU 95 ? CG ? A GLU 71 CG 8 1 Y 1 A GLU 95 ? CD ? A GLU 71 CD 9 1 Y 1 A GLU 95 ? OE1 ? A GLU 71 OE1 10 1 Y 1 A GLU 95 ? OE2 ? A GLU 71 OE2 11 1 Y 1 A GLN 134 ? CG ? A GLN 110 CG 12 1 Y 1 A GLN 134 ? CD ? A GLN 110 CD 13 1 Y 1 A GLN 134 ? OE1 ? A GLN 110 OE1 14 1 Y 1 A GLN 134 ? NE2 ? A GLN 110 NE2 15 1 Y 1 A LYS 136 ? CG ? A LYS 112 CG 16 1 Y 1 A LYS 136 ? CD ? A LYS 112 CD 17 1 Y 1 A LYS 136 ? CE ? A LYS 112 CE 18 1 Y 1 A LYS 136 ? NZ ? A LYS 112 NZ 19 1 Y 1 A GLN 137 ? CG ? A GLN 113 CG 20 1 Y 1 A GLN 137 ? CD ? A GLN 113 CD 21 1 Y 1 A GLN 137 ? OE1 ? A GLN 113 OE1 22 1 Y 1 A GLN 137 ? NE2 ? A GLN 113 NE2 23 1 Y 1 A LYS 138 ? CD ? A LYS 114 CD 24 1 Y 1 A LYS 138 ? CE ? A LYS 114 CE 25 1 Y 1 A LYS 138 ? NZ ? A LYS 114 NZ 26 1 Y 1 A LYS 158 ? CD ? A LYS 134 CD 27 1 Y 1 A LYS 158 ? CE ? A LYS 134 CE 28 1 Y 1 A LYS 158 ? NZ ? A LYS 134 NZ 29 1 Y 1 A LYS 219 ? CD ? A LYS 195 CD 30 1 Y 1 A LYS 219 ? CE ? A LYS 195 CE 31 1 Y 1 A LYS 219 ? NZ ? A LYS 195 NZ 32 1 Y 1 A LYS 226 ? CD ? A LYS 202 CD 33 1 Y 1 A LYS 226 ? CE ? A LYS 202 CE 34 1 Y 1 A LYS 226 ? NZ ? A LYS 202 NZ 35 1 Y 1 A LYS 269 ? CG ? A LYS 245 CG 36 1 Y 1 A LYS 269 ? CD ? A LYS 245 CD 37 1 Y 1 A LYS 269 ? CE ? A LYS 245 CE 38 1 Y 1 A LYS 269 ? NZ ? A LYS 245 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A THR 26 ? A THR 2 3 1 Y 1 A GLU 27 ? A GLU 3 4 1 Y 1 A GLU 28 ? A GLU 4 5 1 Y 1 A THR 29 ? A THR 5 6 1 Y 1 A ALA 30 ? A ALA 6 7 1 Y 1 A LYS 31 ? A LYS 7 8 1 Y 1 A VAL 32 ? A VAL 8 9 1 Y 1 A VAL 33 ? A VAL 9 10 1 Y 1 A PRO 34 ? A PRO 10 11 1 Y 1 A MSE 35 ? A MSE 11 12 1 Y 1 A ALA 36 ? A ALA 12 13 1 Y 1 A VAL 37 ? A VAL 13 14 1 Y 1 A ILE 38 ? A ILE 14 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #