HEADER NUCLEIC ACID BINDING PROTEIN/DNA/RNA 28-MAY-09 3HM9 TITLE CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA TITLE 2 GUIDE STRAND AND 19-NT RNA TARGET STRAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGONAUTE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T COMPND 7 P*AP*GP*T)-3'; COMPND 8 CHAIN: X; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP COMPND 12 *G)-3'; COMPND 13 CHAIN: Y; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TT_P0026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, NUCLEIC ACID BINDING PROTEIN-DNA- KEYWDS 2 RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,H.LI,G.SHENG,D.J.PATEL REVDAT 4 21-FEB-24 3HM9 1 REMARK LINK REVDAT 3 13-JUL-11 3HM9 1 VERSN REVDAT 2 20-OCT-09 3HM9 1 JRNL REVDAT 1 06-OCT-09 3HM9 0 JRNL AUTH Y.WANG,S.JURANEK,H.LI,G.SHENG,G.S.WARDLE,T.TUSCHL,D.J.PATEL JRNL TITL NUCLEATION, PROPAGATION AND CLEAVAGE OF TARGET RNAS IN AGO JRNL TITL 2 SILENCING COMPLEXES. JRNL REF NATURE V. 461 754 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19812667 JRNL DOI 10.1038/NATURE08434 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1161 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4631 REMARK 3 NUCLEIC ACID ATOMS : 606 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.549 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.466 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 60.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5421 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7510 ; 1.398 ; 2.105 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 649 ; 7.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;34.407 ;21.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;22.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;18.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3970 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3247 ; 0.320 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5003 ; 0.645 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2174 ; 1.036 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2507 ; 1.746 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5087 36.3535 15.7265 REMARK 3 T TENSOR REMARK 3 T11: 0.9757 T22: 1.3049 REMARK 3 T33: 0.9642 T12: 0.1230 REMARK 3 T13: -0.2353 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 2.1654 L22: 4.6375 REMARK 3 L33: 0.2793 L12: -2.0858 REMARK 3 L13: -0.6444 L23: 0.6222 REMARK 3 S TENSOR REMARK 3 S11: -0.5221 S12: -0.7231 S13: 0.9153 REMARK 3 S21: 1.2981 S22: 0.6524 S23: -0.2157 REMARK 3 S31: 0.1795 S32: 0.4573 S33: -0.1303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5187 18.4727 12.2599 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 1.0326 REMARK 3 T33: 0.8915 T12: 0.1028 REMARK 3 T13: -0.0365 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 1.6027 L22: 4.7520 REMARK 3 L33: 10.7080 L12: -1.0922 REMARK 3 L13: -2.2330 L23: -3.6789 REMARK 3 S TENSOR REMARK 3 S11: -0.3441 S12: 0.1211 S13: -0.0303 REMARK 3 S21: 0.0827 S22: 0.4395 S23: 0.7215 REMARK 3 S31: 0.6467 S32: -1.2636 S33: -0.0954 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): -47.4484 13.4705 39.6774 REMARK 3 T TENSOR REMARK 3 T11: 2.2491 T22: 2.7312 REMARK 3 T33: 1.9990 T12: -0.3306 REMARK 3 T13: 0.4248 T23: -0.3869 REMARK 3 L TENSOR REMARK 3 L11: 1.4385 L22: 1.2137 REMARK 3 L33: 1.0047 L12: 1.2719 REMARK 3 L13: -1.1848 L23: -1.0232 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: 1.1745 S13: 0.3104 REMARK 3 S21: 0.6511 S22: 0.5897 S23: 0.3991 REMARK 3 S31: -0.0478 S32: -0.9217 S33: -0.6233 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5284 9.9668 4.9847 REMARK 3 T TENSOR REMARK 3 T11: 0.6983 T22: 1.0234 REMARK 3 T33: 0.4931 T12: -0.0954 REMARK 3 T13: 0.0224 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 3.6551 L22: 3.6171 REMARK 3 L33: 1.5392 L12: -2.3547 REMARK 3 L13: 1.1820 L23: -1.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.5608 S13: -0.1284 REMARK 3 S21: -0.6644 S22: 0.0580 S23: 0.5477 REMARK 3 S31: 0.7735 S32: -0.2409 S33: -0.0968 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2283 -9.5014 32.1802 REMARK 3 T TENSOR REMARK 3 T11: 0.3509 T22: 0.2596 REMARK 3 T33: 0.4527 T12: 0.1549 REMARK 3 T13: 0.1219 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 1.8489 L22: 4.5555 REMARK 3 L33: 3.3111 L12: 1.6143 REMARK 3 L13: -0.2864 L23: -1.5815 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.3695 S13: -0.4227 REMARK 3 S21: -0.3518 S22: 0.1241 S23: -0.3337 REMARK 3 S31: 0.6434 S32: -0.0077 S33: 0.0524 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 522 A 685 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9880 8.4284 21.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.3678 REMARK 3 T33: 0.2884 T12: 0.1405 REMARK 3 T13: 0.1375 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.4761 L22: 2.9772 REMARK 3 L33: 4.5856 L12: 0.5358 REMARK 3 L13: -0.5396 L23: -0.3967 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.5990 S13: -0.1923 REMARK 3 S21: -0.3484 S22: 0.0470 S23: -0.1283 REMARK 3 S31: 0.0813 S32: 0.0097 S33: -0.0199 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8775 -0.1975 21.0311 REMARK 3 T TENSOR REMARK 3 T11: 0.5050 T22: 0.6931 REMARK 3 T33: 0.7606 T12: -0.0078 REMARK 3 T13: -0.0234 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 6.7644 L22: 3.3307 REMARK 3 L33: 4.2813 L12: -2.7385 REMARK 3 L13: 1.1889 L23: -3.4116 REMARK 3 S TENSOR REMARK 3 S11: -0.3948 S12: 0.4816 S13: 0.5282 REMARK 3 S21: -0.1349 S22: 0.7520 S23: 0.4012 REMARK 3 S31: 0.3979 S32: -1.2688 S33: -0.3572 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 16 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2257 21.2459 29.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.6867 T22: 0.7543 REMARK 3 T33: 0.9597 T12: 0.2346 REMARK 3 T13: 0.0358 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 17.1831 L22: 0.7845 REMARK 3 L33: 2.7196 L12: -2.2448 REMARK 3 L13: -0.0763 L23: 1.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.2000 S12: 0.3884 S13: 1.4018 REMARK 3 S21: -0.0657 S22: -0.3367 S23: 0.1577 REMARK 3 S31: -0.1795 S32: -0.7040 S33: 0.5367 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 6 Y 10 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1391 18.1185 23.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.5028 T22: 0.8734 REMARK 3 T33: 0.8128 T12: -0.0869 REMARK 3 T13: -0.1756 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 12.6402 L22: 2.5590 REMARK 3 L33: 21.6588 L12: 0.1798 REMARK 3 L13: -10.3522 L23: 5.6279 REMARK 3 S TENSOR REMARK 3 S11: -0.5166 S12: 1.2305 S13: 1.3857 REMARK 3 S21: -0.6907 S22: 0.0323 S23: 0.8447 REMARK 3 S31: -1.1830 S32: -0.6883 S33: 0.4844 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 11 Y 18 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8356 -1.7407 20.6488 REMARK 3 T TENSOR REMARK 3 T11: 0.8916 T22: 0.9562 REMARK 3 T33: 0.6261 T12: -0.3046 REMARK 3 T13: -0.0142 T23: 0.1351 REMARK 3 L TENSOR REMARK 3 L11: 6.2780 L22: 5.4275 REMARK 3 L33: 10.7256 L12: -2.7748 REMARK 3 L13: 3.2457 L23: 4.5774 REMARK 3 S TENSOR REMARK 3 S11: 0.4313 S12: 0.1867 S13: -0.2194 REMARK 3 S21: -0.1093 S22: -0.7666 S23: 0.6882 REMARK 3 S31: 0.6430 S32: -1.3376 S33: 0.3352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17434 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MGCL2, 1.0 M NA TARTRATE, 50 MM REMARK 280 TRIS.HCL PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 308 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.77550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.95800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.95800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.66325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.95800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.95800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.88775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.95800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.95800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.66325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.95800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.95800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.88775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.77550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 215 REMARK 465 PRO A 216 REMARK 465 LEU A 217 REMARK 465 PRO A 218 REMARK 465 GLY A 219 REMARK 465 GLY A 220 REMARK 465 PRO A 247 REMARK 465 LYS A 248 REMARK 465 ASP A 249 REMARK 465 PRO A 250 REMARK 465 ARG A 251 REMARK 465 LYS A 252 REMARK 465 GLU A 268 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 HIS A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 GLU A 274 REMARK 465 GLY A 275 REMARK 465 SER A 276 REMARK 465 LEU A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 498 REMARK 465 HIS A 607 REMARK 465 ARG A 608 REMARK 465 ASP A 609 REMARK 465 PHE A 610 REMARK 465 ARG A 611 REMARK 465 DA X 17 REMARK 465 DT X 18 REMARK 465 DA X 19 REMARK 465 DG X 20 REMARK 465 DT X 21 REMARK 465 U Y 1 REMARK 465 A Y 2 REMARK 465 U Y 3 REMARK 465 A Y 4 REMARK 465 C Y 5 REMARK 465 G Y 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 3 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 9 CG1 CG2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LEU A 33 CG CD1 CD2 REMARK 470 ASP A 34 CG OD1 OD2 REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 TYR A 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 56 CG1 CG2 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 LEU A 75 CG CD1 CD2 REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 MET A 82 CG SD CE REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 THR A 85 OG1 CG2 REMARK 470 TYR A 86 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 92 CG CD REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 143 CG CD REMARK 470 TRP A 145 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 145 CZ3 CH2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 TRP A 182 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 182 CZ3 CH2 REMARK 470 LEU A 183 CG CD1 CD2 REMARK 470 HIS A 187 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 188 CG CD REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 PRO A 190 CG CD REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 193 CG1 CG2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 TYR A 197 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 THR A 201 OG1 CG2 REMARK 470 TRP A 202 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 202 CZ3 CH2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LEU A 204 CG CD1 CD2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 207 CG CD1 CD2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 PRO A 212 CG CD REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 SER A 222 OG REMARK 470 LEU A 223 CG CD1 CD2 REMARK 470 LEU A 224 CG CD1 CD2 REMARK 470 ASP A 225 CG OD1 OD2 REMARK 470 TYR A 226 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 227 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 229 OG REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 241 CG1 CG2 REMARK 470 TRP A 243 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 243 CZ3 CH2 REMARK 470 VAL A 244 CG1 CG2 REMARK 470 ILE A 254 CG1 CG2 CD1 REMARK 470 PRO A 255 CG CD REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 VAL A 262 CG1 CG2 REMARK 470 PRO A 263 CG CD REMARK 470 VAL A 264 CG1 CG2 REMARK 470 LEU A 265 CG CD1 CD2 REMARK 470 THR A 266 OG1 CG2 REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 LEU A 279 CG CD1 CD2 REMARK 470 SER A 280 OG REMARK 470 LEU A 281 CG CD1 CD2 REMARK 470 PRO A 282 CG CD REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 ILE A 297 CG1 CG2 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LEU A 321 CG CD1 CD2 REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 342 CG CD OE1 NE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LEU A 361 CG CD1 CD2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 367 CG CD NE CZ NH1 NH2 REMARK 470 SER A 372 OG REMARK 470 SER A 386 OG REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 LEU A 439 CG CD1 CD2 REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 470 SER A 466 OG REMARK 470 ARG A 482 CG CD NE CZ NH1 NH2 REMARK 470 SER A 484 OG REMARK 470 ASP A 497 CB CG OD1 OD2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 549 CG1 CG2 REMARK 470 GLN A 551 CG CD OE1 NE2 REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 SER A 576 OG REMARK 470 GLN A 585 CG CD OE1 NE2 REMARK 470 LEU A 588 CG CD1 CD2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LEU A 604 CG CD1 CD2 REMARK 470 THR A 605 OG1 CG2 REMARK 470 VAL A 606 CG1 CG2 REMARK 470 LYS A 675 CG CD CE NZ REMARK 470 GLU A 676 CG CD OE1 OE2 REMARK 470 GLU A 680 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 204 C LEU A 205 N 0.170 REMARK 500 DT X 1 P DT X 1 OP3 -0.132 REMARK 500 DT X 6 O3' DA X 7 P -0.119 REMARK 500 A Y 6 O3' A Y 7 P -0.206 REMARK 500 C Y 9 O3' C Y 9 C3' 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 143 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 DT X 1 OP1 - P - OP2 ANGL. DEV. = -14.0 DEGREES REMARK 500 DT X 1 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG X 2 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG X 2 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA X 3 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG X 5 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG X 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT X 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA X 7 C3' - O3' - P ANGL. DEV. = -12.0 DEGREES REMARK 500 DG X 8 O3' - P - OP2 ANGL. DEV. = 16.4 DEGREES REMARK 500 DT X 9 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA X 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG X 11 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT X 13 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT X 13 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG X 15 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG X 15 C3' - C2' - C1' ANGL. DEV. = -10.4 DEGREES REMARK 500 DG X 15 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG X 15 C3' - O3' - P ANGL. DEV. = 10.3 DEGREES REMARK 500 A Y 7 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 C Y 9 C4' - C3' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 C Y 9 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 C Y 12 C3' - O3' - P ANGL. DEV. = -11.6 DEGREES REMARK 500 U Y 13 O3' - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 U Y 17 C3' - O3' - P ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 -62.81 -25.56 REMARK 500 ARG A 25 78.25 -156.44 REMARK 500 PRO A 36 153.59 -48.67 REMARK 500 PRO A 37 -151.34 -70.04 REMARK 500 GLU A 40 -18.59 -142.57 REMARK 500 ALA A 47 31.16 -98.20 REMARK 500 ARG A 59 155.52 -49.56 REMARK 500 LYS A 93 7.66 -163.58 REMARK 500 GLU A 125 -96.39 -93.91 REMARK 500 GLU A 130 63.58 -111.32 REMARK 500 PRO A 143 83.26 -60.97 REMARK 500 ASP A 159 -0.95 89.86 REMARK 500 ALA A 181 -4.76 -59.90 REMARK 500 PRO A 188 -164.86 -72.42 REMARK 500 ASP A 198 -158.69 -135.97 REMARK 500 GLU A 203 -161.88 -75.11 REMARK 500 LEU A 205 -86.66 -76.69 REMARK 500 ALA A 228 8.10 -69.98 REMARK 500 ALA A 245 -161.94 -107.68 REMARK 500 THR A 258 43.91 -82.45 REMARK 500 LEU A 261 90.24 -169.02 REMARK 500 VAL A 262 89.94 -64.82 REMARK 500 ALA A 308 125.65 -38.14 REMARK 500 GLU A 343 114.78 -38.74 REMARK 500 ASP A 352 -152.05 -78.34 REMARK 500 HIS A 382 69.73 -105.44 REMARK 500 GLU A 401 26.78 -79.08 REMARK 500 PRO A 438 94.81 -60.67 REMARK 500 GLU A 443 38.68 -78.44 REMARK 500 VAL A 462 -78.28 -29.36 REMARK 500 ARG A 482 -144.67 -128.58 REMARK 500 GLU A 483 -113.40 -96.97 REMARK 500 ARG A 536 137.24 -175.24 REMARK 500 ALA A 555 -71.22 -45.71 REMARK 500 LEU A 596 -131.89 -117.59 REMARK 500 ASP A 598 134.79 -36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 436 VAL A 437 -148.28 REMARK 500 VAL A 494 GLY A 495 -141.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 687 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 478 OD1 REMARK 620 2 ASP A 546 OD2 79.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 686 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 685 O REMARK 620 2 VAL A 685 OXT 56.3 REMARK 620 3 DT X 1 OP1 96.1 111.5 REMARK 620 4 DA X 3 OP1 137.1 80.9 99.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 686 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 687 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HGE RELATED DB: PDB REMARK 900 MUTANT PROTEIN D546N COMPLEXED WITH SAME DNA GUIDE AND 20-NT RNA REMARK 900 TAGET CONTAINING ONE NUCLEIC ACID BULGE REMARK 900 RELATED ID: 3HJF RELATED DB: PDB REMARK 900 MUTANT PROTEIN D546E COMPLEXED WITH SAME DNA GUIDE AND 15-NT RNA REMARK 900 GUIDE REMARK 900 RELATED ID: 3HK2 RELATED DB: PDB REMARK 900 MUTANT PROTEIN D478N COMPLEXED WITH SAME DNA GUIDE AND 19-NT RNA REMARK 900 GUIDE REMARK 900 RELATED ID: 3DLB RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH 10-NT DNA GUIDE STRAND REMARK 900 RELATED ID: 3DLH RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH SAME DNA GUIDE STRAND REMARK 900 RELATED ID: 3F73 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH SAME DNA GUIDE STRAND AND 20-NT RNA REMARK 900 TARGET WITH TWO MISMATCHES. DBREF 3HM9 A 1 685 UNP Q746M7 Q746M7_THET2 1 685 DBREF 3HM9 X 1 21 PDB 3HM9 3HM9 1 21 DBREF 3HM9 Y 1 19 PDB 3HM9 3HM9 1 19 SEQRES 1 A 685 MET ASN HIS LEU GLY LYS THR GLU VAL PHE LEU ASN ARG SEQRES 2 A 685 PHE ALA LEU ARG PRO LEU ASN PRO GLU GLU LEU ARG PRO SEQRES 3 A 685 TRP ARG LEU GLU VAL VAL LEU ASP PRO PRO PRO GLY ARG SEQRES 4 A 685 GLU GLU VAL TYR PRO LEU LEU ALA GLN VAL ALA ARG ARG SEQRES 5 A 685 ALA GLY GLY VAL THR VAL ARG MET GLY ASP GLY LEU ALA SEQRES 6 A 685 SER TRP SER PRO PRO GLU VAL LEU VAL LEU GLU GLY THR SEQRES 7 A 685 LEU ALA ARG MET GLY GLN THR TYR ALA TYR ARG LEU TYR SEQRES 8 A 685 PRO LYS GLY ARG ARG PRO LEU ASP PRO LYS ASP PRO GLY SEQRES 9 A 685 GLU ARG SER VAL LEU SER ALA LEU ALA ARG ARG LEU LEU SEQRES 10 A 685 GLN GLU ARG LEU ARG ARG LEU GLU GLY VAL TRP VAL GLU SEQRES 11 A 685 GLY LEU ALA VAL TYR ARG ARG GLU HIS ALA ARG GLY PRO SEQRES 12 A 685 GLY TRP ARG VAL LEU GLY GLY ALA VAL LEU ASP LEU TRP SEQRES 13 A 685 VAL SER ASP SER GLY ALA PHE LEU LEU GLU VAL ASP PRO SEQRES 14 A 685 ALA TYR ARG ILE LEU CYS GLU MET SER LEU GLU ALA TRP SEQRES 15 A 685 LEU ALA GLN GLY HIS PRO LEU PRO LYS ARG VAL ARG ASN SEQRES 16 A 685 ALA TYR ASP ARG ARG THR TRP GLU LEU LEU ARG LEU GLY SEQRES 17 A 685 GLU GLU ASP PRO LYS GLU LEU PRO LEU PRO GLY GLY LEU SEQRES 18 A 685 SER LEU LEU ASP TYR HIS ALA SER LYS GLY ARG LEU GLN SEQRES 19 A 685 GLY ARG GLU GLY GLY ARG VAL ALA TRP VAL ALA ASP PRO SEQRES 20 A 685 LYS ASP PRO ARG LYS PRO ILE PRO HIS LEU THR GLY LEU SEQRES 21 A 685 LEU VAL PRO VAL LEU THR LEU GLU ASP LEU HIS GLU GLU SEQRES 22 A 685 GLU GLY SER LEU ALA LEU SER LEU PRO TRP GLU GLU ARG SEQRES 23 A 685 ARG ARG ARG THR ARG GLU ILE ALA SER TRP ILE GLY ARG SEQRES 24 A 685 ARG LEU GLY LEU GLY THR PRO GLU ALA VAL ARG ALA GLN SEQRES 25 A 685 ALA TYR ARG LEU SER ILE PRO LYS LEU MET GLY ARG ARG SEQRES 26 A 685 ALA VAL SER LYS PRO ALA ASP ALA LEU ARG VAL GLY PHE SEQRES 27 A 685 TYR ARG ALA GLN GLU THR ALA LEU ALA LEU LEU ARG LEU SEQRES 28 A 685 ASP GLY ALA GLN GLY TRP PRO GLU PHE LEU ARG ARG ALA SEQRES 29 A 685 LEU LEU ARG ALA PHE GLY ALA SER GLY ALA SER LEU ARG SEQRES 30 A 685 LEU HIS THR LEU HIS ALA HIS PRO SER GLN GLY LEU ALA SEQRES 31 A 685 PHE ARG GLU ALA LEU ARG LYS ALA LYS GLU GLU GLY VAL SEQRES 32 A 685 GLN ALA VAL LEU VAL LEU THR PRO PRO MET ALA TRP GLU SEQRES 33 A 685 ASP ARG ASN ARG LEU LYS ALA LEU LEU LEU ARG GLU GLY SEQRES 34 A 685 LEU PRO SER GLN ILE LEU ASN VAL PRO LEU ARG GLU GLU SEQRES 35 A 685 GLU ARG HIS ARG TRP GLU ASN ALA LEU LEU GLY LEU LEU SEQRES 36 A 685 ALA LYS ALA GLY LEU GLN VAL VAL ALA LEU SER GLY ALA SEQRES 37 A 685 TYR PRO ALA GLU LEU ALA VAL GLY PHE ASP ALA GLY GLY SEQRES 38 A 685 ARG GLU SER PHE ARG PHE GLY GLY ALA ALA CYS ALA VAL SEQRES 39 A 685 GLY GLY ASP GLY GLY HIS LEU LEU TRP THR LEU PRO GLU SEQRES 40 A 685 ALA GLN ALA GLY GLU ARG ILE PRO GLN GLU VAL VAL TRP SEQRES 41 A 685 ASP LEU LEU GLU GLU THR LEU TRP ALA PHE ARG ARG LYS SEQRES 42 A 685 ALA GLY ARG LEU PRO SER ARG VAL LEU LEU LEU ARG ASP SEQRES 43 A 685 GLY ARG VAL PRO GLN ASP GLU PHE ALA LEU ALA LEU GLU SEQRES 44 A 685 ALA LEU ALA ARG GLU GLY ILE ALA TYR ASP LEU VAL SER SEQRES 45 A 685 VAL ARG LYS SER GLY GLY GLY ARG VAL TYR PRO VAL GLN SEQRES 46 A 685 GLY ARG LEU ALA ASP GLY LEU TYR VAL PRO LEU GLU ASP SEQRES 47 A 685 LYS THR PHE LEU LEU LEU THR VAL HIS ARG ASP PHE ARG SEQRES 48 A 685 GLY THR PRO ARG PRO LEU LYS LEU VAL HIS GLU ALA GLY SEQRES 49 A 685 ASP THR PRO LEU GLU ALA LEU ALA HIS GLN ILE PHE HIS SEQRES 50 A 685 LEU THR ARG LEU TYR PRO ALA SER GLY PHE ALA PHE PRO SEQRES 51 A 685 ARG LEU PRO ALA PRO LEU HIS LEU ALA ASP ARG LEU VAL SEQRES 52 A 685 LYS GLU VAL GLY ARG LEU GLY ILE ARG HIS LEU LYS GLU SEQRES 53 A 685 VAL ASP ARG GLU LYS LEU PHE PHE VAL SEQRES 1 X 21 DT DG DA DG DG DT DA DG DT DA DG DG DT SEQRES 2 X 21 DT DG DT DA DT DA DG DT SEQRES 1 Y 19 U A U A C A A C C U A C U SEQRES 2 Y 19 A C C U C G HET MG A 686 1 HET MG A 687 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 2(MG 2+) HELIX 1 1 ASN A 20 ARG A 25 5 6 HELIX 2 2 GLN A 48 ALA A 53 1 6 HELIX 3 3 ASP A 102 ARG A 122 1 21 HELIX 4 4 PRO A 282 LEU A 301 1 20 HELIX 5 5 LYS A 329 ALA A 331 5 3 HELIX 6 6 ASP A 332 GLY A 337 1 6 HELIX 7 7 PRO A 358 SER A 372 1 15 HELIX 8 8 HIS A 384 GLN A 387 5 4 HELIX 9 9 GLY A 388 GLU A 401 1 14 HELIX 10 10 ALA A 414 ARG A 427 1 14 HELIX 11 11 GLU A 443 GLY A 459 1 17 HELIX 12 12 PRO A 515 GLY A 535 1 21 HELIX 13 13 PHE A 554 GLU A 564 1 11 HELIX 14 14 PRO A 627 ARG A 640 1 14 HELIX 15 15 PRO A 653 GLY A 670 1 18 SHEET 1 A14 TRP A 128 GLU A 130 0 SHEET 2 A14 ALA A 133 TYR A 135 -1 O ALA A 133 N GLU A 130 SHEET 3 A14 ALA A 151 VAL A 157 -1 O ALA A 151 N VAL A 134 SHEET 4 A14 ALA A 162 ASP A 168 -1 O LEU A 164 N TRP A 156 SHEET 5 A14 GLY A 5 PRO A 18 -1 N LEU A 16 O PHE A 163 SHEET 6 A14 GLU A 307 ARG A 315 -1 O ALA A 313 N THR A 7 SHEET 7 A14 LEU A 592 PRO A 595 -1 O TYR A 593 N TYR A 314 SHEET 8 A14 THR A 600 LEU A 604 -1 O LEU A 602 N VAL A 594 SHEET 9 A14 LEU A 617 GLY A 624 -1 O LEU A 619 N PHE A 601 SHEET 10 A14 ALA A 567 ARG A 574 -1 N LEU A 570 O ALA A 623 SHEET 11 A14 ARG A 540 ASP A 546 1 N LEU A 543 O ASP A 569 SHEET 12 A14 LEU A 473 ALA A 479 1 N VAL A 475 O LEU A 542 SHEET 13 A14 ARG A 486 ALA A 493 -1 O ALA A 491 N GLY A 476 SHEET 14 A14 GLU A 507 GLN A 509 -1 O GLN A 509 N ARG A 486 SHEET 1 B11 LEU A 501 TRP A 503 0 SHEET 2 B11 ARG A 486 ALA A 493 -1 N CYS A 492 O LEU A 502 SHEET 3 B11 LEU A 473 ALA A 479 -1 N GLY A 476 O ALA A 491 SHEET 4 B11 ARG A 540 ASP A 546 1 O LEU A 542 N VAL A 475 SHEET 5 B11 ALA A 567 ARG A 574 1 O ASP A 569 N LEU A 543 SHEET 6 B11 LEU A 617 GLY A 624 -1 O ALA A 623 N LEU A 570 SHEET 7 B11 THR A 600 LEU A 604 -1 N PHE A 601 O LEU A 619 SHEET 8 B11 LEU A 592 PRO A 595 -1 N VAL A 594 O LEU A 602 SHEET 9 B11 GLU A 307 ARG A 315 -1 N TYR A 314 O TYR A 593 SHEET 10 B11 GLY A 5 PRO A 18 -1 N THR A 7 O ALA A 313 SHEET 11 B11 VAL A 581 PRO A 583 -1 O TYR A 582 N PHE A 10 SHEET 1 C 4 THR A 57 ARG A 59 0 SHEET 2 C 4 LEU A 64 SER A 66 -1 O ALA A 65 N VAL A 58 SHEET 3 C 4 TRP A 27 GLU A 30 -1 N TRP A 27 O SER A 66 SHEET 4 C 4 TYR A 91 ARG A 95 -1 O TYR A 91 N GLU A 30 SHEET 1 D 2 ALA A 80 ARG A 81 0 SHEET 2 D 2 GLN A 84 THR A 85 -1 O GLN A 84 N ARG A 81 SHEET 1 E 3 GLU A 138 GLY A 142 0 SHEET 2 E 3 TRP A 145 LEU A 148 -1 O TRP A 145 N GLY A 142 SHEET 3 E 3 LEU A 174 CYS A 175 -1 O LEU A 174 N ARG A 146 SHEET 1 F 2 LEU A 321 MET A 322 0 SHEET 2 F 2 ALA A 464 LEU A 465 -1 O ALA A 464 N MET A 322 SHEET 1 G 4 LEU A 376 LEU A 378 0 SHEET 2 G 4 THR A 344 ARG A 350 1 N LEU A 346 O ARG A 377 SHEET 3 G 4 ALA A 405 THR A 410 1 O LEU A 409 N LEU A 349 SHEET 4 G 4 SER A 432 ASN A 436 1 O GLN A 433 N VAL A 408 LINK OD1 ASP A 478 MG MG A 687 1555 1555 2.28 LINK OD2 ASP A 546 MG MG A 687 1555 1555 2.08 LINK O VAL A 685 MG MG A 686 1555 1555 2.00 LINK OXT VAL A 685 MG MG A 686 1555 1555 2.38 LINK MG MG A 686 OP1 DT X 1 1555 1555 2.12 LINK MG MG A 686 OP1 DA X 3 1555 1555 2.12 CISPEP 1 ASP A 34 PRO A 35 0 -3.54 SITE 1 AC1 5 GLN A 433 LYS A 457 VAL A 685 DT X 1 SITE 2 AC1 5 DA X 3 SITE 1 AC2 3 ASP A 478 ASP A 546 C Y 9 CRYST1 111.916 111.916 175.551 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005696 0.00000