HEADER HYDROLASE/DNA 06-JUN-09 3HQG TITLE CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE ECORII CATALYTIC C- TITLE 2 TERMINAL DOMAIN IN COMPLEX WITH COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-2 RESTRICTION ENZYME ECORII; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN (UNP RESIDUES 183-404); COMPND 5 SYNONYM: R.ECORII, TYPE II RESTRICTION ENZYME ECORII, ENDONUCLEASE COMPND 6 ECORII; COMPND 7 EC: 3.1.21.4; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*A)-3'; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*AP*GP*CP*CP*TP*GP*GP*TP*CP*GP*A)-3'; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ECORII, ECORIIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS RESTRICTION ENDONUCLEASE, ECORII, NUCLEOTIDE FLIPPING, PROTEIN-DNA KEYWDS 2 COMPLEX, DNA RECOGNITION, ENDONUCLEASE, HYDROLASE, MAGNESIUM, KEYWDS 3 NUCLEASE, RESTRICTION SYSTEM, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.GOLOVENKO,E.MANAKOVA,S.GRAZULIS,G.TAMULAITIENE,V.SIKSNYS REVDAT 4 06-SEP-23 3HQG 1 REMARK REVDAT 3 13-JUL-11 3HQG 1 VERSN REVDAT 2 11-AUG-10 3HQG 1 JRNL REVDAT 1 22-SEP-09 3HQG 0 JRNL AUTH D.GOLOVENKO,E.MANAKOVA,G.TAMULAITIENE,S.GRAZULIS,V.SIKSNYS JRNL TITL STRUCTURAL MECHANISMS FOR THE 5'-CCWGG SEQUENCE RECOGNITION JRNL TITL 2 BY THE N- AND C-TERMINAL DOMAINS OF ECORII. JRNL REF NUCLEIC ACIDS RES. V. 37 6613 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19729506 JRNL DOI 10.1093/NAR/GKP699 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.E.ZHOU,Y.WANG,M.REUTER,M.MUCKE,D.H.KRUGER,E.J.MEEHAN, REMARK 1 AUTH 2 L.CHEN REMARK 1 TITL CRYSTAL STRUCTURE OF TYPE IIE RESTRICTION ENDONUCLEASE REMARK 1 TITL 2 ECORII REVEALS AN AUTOINHIBITION MECHANISM BY A NOVEL REMARK 1 TITL 3 EFFECTOR-BINDING FOLD REMARK 1 REF J.MOL.BIOL. V. 335 307 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 14659759 REMARK 1 DOI 10.1016/J.JMB.2003.10.030 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.5520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1806 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 72.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.14000 REMARK 3 B22 (A**2) : -2.88000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.430 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.346 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2594 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3352 ; 1.012 ; 2.220 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 4.750 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;33.714 ;23.191 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;18.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.024 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1666 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 0.286 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1793 ; 0.551 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 0.522 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1558 ; 0.930 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 404 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 RESIDUE RANGE : A 2 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3881 -6.3289 -14.6345 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0313 REMARK 3 T33: 0.0955 T12: 0.0053 REMARK 3 T13: -0.0632 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.2894 L22: 1.0715 REMARK 3 L33: 1.1991 L12: 0.3072 REMARK 3 L13: -0.4923 L23: -0.3110 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.1765 S13: -0.0216 REMARK 3 S21: 0.0238 S22: 0.0322 S23: 0.1258 REMARK 3 S31: -0.0233 S32: -0.0557 S33: -0.0389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 5 REMARK 3 RESIDUE RANGE : B 9 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5514 0.0438 -19.7907 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1249 REMARK 3 T33: 0.1407 T12: 0.0374 REMARK 3 T13: 0.0253 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.9905 L22: 3.2383 REMARK 3 L33: 0.7942 L12: 1.7869 REMARK 3 L13: 0.8505 L23: 1.5444 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: 0.0604 S13: 0.1275 REMARK 3 S21: -0.2143 S22: 0.0775 S23: 0.2269 REMARK 3 S31: -0.1394 S32: 0.0519 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -5 C 6 REMARK 3 RESIDUE RANGE : C 39 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4921 -2.1521 -19.5849 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.0725 REMARK 3 T33: 0.0526 T12: 0.0510 REMARK 3 T13: -0.0358 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 8.1482 L22: 4.1253 REMARK 3 L33: 1.8514 L12: 0.9261 REMARK 3 L13: -3.6897 L23: 0.4317 REMARK 3 S TENSOR REMARK 3 S11: -0.2870 S12: 0.3950 S13: -0.1931 REMARK 3 S21: 0.2351 S22: 0.1650 S23: 0.2820 REMARK 3 S31: 0.1803 S32: -0.1433 S33: 0.1220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8080 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 47.836 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 12.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NA6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG1500, 25% GLYCEROL, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.52700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.98550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.52700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.98550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X+1, -Y, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.05400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B -1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC B 3 C2 - N3 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C -1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 184 103.80 51.13 REMARK 500 LEU A 191 -75.21 -87.52 REMARK 500 LYS A 209 127.50 73.68 REMARK 500 LEU A 212 -4.05 -56.65 REMARK 500 THR A 292 -84.26 -97.88 REMARK 500 ASN A 295 -93.27 -104.93 REMARK 500 LYS A 328 -130.68 49.56 REMARK 500 LEU A 335 -103.65 -47.26 REMARK 500 ASN A 336 44.92 -67.05 REMARK 500 ARG A 383 -34.98 -39.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NA6 RELATED DB: PDB REMARK 900 ECORII-R88A REMARK 900 RELATED ID: 3HQF RELATED DB: PDB DBREF 3HQG A 183 404 UNP P14633 T2E2_ECOLX 183 404 DBREF 3HQG B -6 5 PDB 3HQG 3HQG -6 5 DBREF 3HQG C -5 6 PDB 3HQG 3HQG -5 6 SEQRES 1 A 222 TYR ILE LEU PRO GLU ASP TRP HIS LEU ARG PHE PRO SER SEQRES 2 A 222 GLY SER GLU ILE ILE GLN TYR ALA ALA SER HIS TYR VAL SEQRES 3 A 222 LYS ASN SER LEU ASP PRO ASP GLU GLN LEU LEU ASP ARG SEQRES 4 A 222 ARG ARG VAL GLU TYR ASP ILE PHE LEU LEU VAL GLU GLU SEQRES 5 A 222 LEU HIS VAL LEU ASP ILE ILE ARG LYS GLY PHE GLY SER SEQRES 6 A 222 VAL ASP GLU PHE ILE ALA LEU ALA ASN SER VAL SER ASN SEQRES 7 A 222 ARG ARG LYS SER ARG ALA GLY LYS SER LEU GLU LEU HIS SEQRES 8 A 222 LEU GLU HIS LEU PHE ILE GLU HIS GLY LEU ARG HIS PHE SEQRES 9 A 222 ALA THR GLN ALA ILE THR GLU GLY ASN LYS LYS PRO ASP SEQRES 10 A 222 PHE LEU PHE PRO SER ALA GLY ALA TYR HIS ASP THR GLU SEQRES 11 A 222 PHE PRO VAL GLU ASN LEU ARG MET LEU ALA VAL LYS THR SEQRES 12 A 222 THR CYS LYS ASP ARG TRP ARG GLN ILE LEU ASN GLU ALA SEQRES 13 A 222 ASP LYS ILE HIS GLN VAL HIS LEU PHE THR LEU GLN GLU SEQRES 14 A 222 GLY VAL SER LEU ALA GLN TYR ARG GLU MET ARG GLU SER SEQRES 15 A 222 GLY VAL ARG LEU VAL VAL PRO SER SER LEU HIS LYS LYS SEQRES 16 A 222 TYR PRO GLU ALA VAL ARG ALA GLU LEU MET THR LEU GLY SEQRES 17 A 222 ALA PHE ILE ALA GLU LEU THR GLY LEU TYR ALA ASP ILE SEQRES 18 A 222 PRO SEQRES 1 B 12 DT DC DG DA DC DC DA DG DG DC DT DA SEQRES 1 C 12 DT DA DG DC DC DT DG DG DT DC DG DA HET GOL A 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *67(H2 O) HELIX 1 1 PRO A 186 HIS A 190 5 5 HELIX 2 2 SER A 195 SER A 205 1 11 HELIX 3 3 ASP A 213 LYS A 243 1 31 HELIX 4 4 SER A 247 HIS A 281 1 35 HELIX 5 5 SER A 304 ASP A 310 1 7 HELIX 6 6 PRO A 314 LEU A 318 5 5 HELIX 7 7 CYS A 327 ALA A 338 5 12 HELIX 8 8 SER A 354 SER A 364 1 11 HELIX 9 9 PRO A 371 TYR A 378 5 8 HELIX 10 10 PRO A 379 ALA A 384 1 6 HELIX 11 11 THR A 388 TYR A 400 1 13 SHEET 1 A 4 PHE A 300 PHE A 302 0 SHEET 2 A 4 ARG A 319 LYS A 324 -1 O ARG A 319 N PHE A 302 SHEET 3 A 4 VAL A 344 THR A 348 1 O PHE A 347 N ALA A 322 SHEET 4 A 4 VAL A 366 VAL A 369 1 O ARG A 367 N LEU A 346 CISPEP 1 LYS A 209 ASN A 210 0 0.83 CISPEP 2 PHE A 302 PRO A 303 0 -3.02 SITE 1 AC1 5 LYS A 328 DG B 1 DG B 2 DG C 1 SITE 2 AC1 5 DG C 2 CRYST1 77.054 57.971 61.010 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016391 0.00000