HEADER MEMBRANE PROTEIN, ION TRANSPORT 17-JUN-09 3HW9 TITLE CATION SELECTIVE PATHWAY OF OMPF PORIN REVEALED BY ANOMALOUS X-RAY TITLE 2 DIFFRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN F; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PORIN OMPF, OUTER MEMBRANE PROTEIN 1A, OUTER MEMBRANE COMPND 5 PROTEIN IA, OUTER MEMBRANE PROTEIN B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0929, CMLB, COA, CRY, JW0912, OMPF, TOLF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MH225; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPR272 KEYWDS PORIN, MEMBRANE PROTEIN, INTEGRAL MEMBRANE PROTEIN PORIN, CELL KEYWDS 2 MEMBRANE, CELL OUTER MEMBRANE, ION TRANSPORT, MEMBRANE, PHAGE KEYWDS 3 RECOGNITION, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.BALASUNDARESAN,S.RAYCHAUDHURY,L.BLACHOWICZ,B.ROUX REVDAT 4 06-SEP-23 3HW9 1 REMARK REVDAT 3 09-MAR-10 3HW9 1 HETATM REVDAT 2 23-FEB-10 3HW9 1 JRNL REVDAT 1 08-DEC-09 3HW9 0 JRNL AUTH B.DHAKSHNAMOORTHY,S.RAYCHAUDHURY,L.BLACHOWICZ,B.ROUX JRNL TITL CATION-SELECTIVE PATHWAY OF OMPF PORIN REVEALED BY ANOMALOUS JRNL TITL 2 X-RAY DIFFRACTION. JRNL REF J.MOL.BIOL. V. 396 293 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19932117 JRNL DOI 10.1016/J.JMB.2009.11.042 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 24470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1323 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.72000 REMARK 3 B22 (A**2) : -5.72000 REMARK 3 B33 (A**2) : 8.58000 REMARK 3 B12 (A**2) : -2.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.877 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5384 ; 0.037 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7266 ; 2.795 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 8.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;39.343 ;24.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;19.016 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.013 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4292 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2493 ; 0.279 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3607 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.244 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3300 ; 1.443 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5206 ; 2.550 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 4.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2060 ; 6.394 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M NACL, NA PHOSPHATE PH 6.5, 0.9% REMARK 280 BOG, 0.09% OCTYLPOE AND 14-18% PEG2000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.64350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -58.77250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.79696 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.77250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -101.79696 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 MET A -20 REMARK 465 LYS A -19 REMARK 465 ARG A -18 REMARK 465 ASN A -17 REMARK 465 ILE A -16 REMARK 465 LEU A -15 REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 ILE A -12 REMARK 465 VAL A -11 REMARK 465 PRO A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 THR A -3 REMARK 465 ALA A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASN A 27 REMARK 465 MET B -21 REMARK 465 MET B -20 REMARK 465 LYS B -19 REMARK 465 ARG B -18 REMARK 465 ASN B -17 REMARK 465 ILE B -16 REMARK 465 LEU B -15 REMARK 465 ALA B -14 REMARK 465 VAL B -13 REMARK 465 ILE B -12 REMARK 465 VAL B -11 REMARK 465 PRO B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 THR B -3 REMARK 465 ALA B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ASN B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 78.18 -151.35 REMARK 500 ASP A 74 34.82 -90.31 REMARK 500 ALA A 91 -121.97 44.40 REMARK 500 ASP A 92 41.01 -103.33 REMARK 500 GLU A 117 -54.64 -134.29 REMARK 500 PHE A 118 -151.79 -92.89 REMARK 500 PHE A 128 -83.56 58.81 REMARK 500 PHE A 144 71.55 44.51 REMARK 500 GLU A 183 77.67 49.86 REMARK 500 ASN A 304 -143.95 -153.64 REMARK 500 ASN B 5 73.80 -158.35 REMARK 500 ASN B 30 37.86 -97.77 REMARK 500 ASN B 52 -159.71 -146.32 REMARK 500 ASP B 74 35.22 -92.40 REMARK 500 ALA B 84 93.13 -161.46 REMARK 500 ALA B 91 -102.33 46.23 REMARK 500 GLU B 117 -55.51 -131.51 REMARK 500 PHE B 118 -152.36 -92.64 REMARK 500 PHE B 128 -78.53 62.60 REMARK 500 PHE B 144 74.09 41.58 REMARK 500 ALA B 202 33.36 -84.80 REMARK 500 ILE B 286 -66.13 -124.50 REMARK 500 ASN B 304 -143.40 -151.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 345 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HWB RELATED DB: PDB REMARK 900 SAME STRUCTURE AT 3.0A RESOLUTION DBREF 3HW9 A -21 340 UNP P02931 OMPF_ECOLI 1 362 DBREF 3HW9 B -21 340 UNP P02931 OMPF_ECOLI 1 362 SEQRES 1 A 362 MET MET LYS ARG ASN ILE LEU ALA VAL ILE VAL PRO ALA SEQRES 2 A 362 LEU LEU VAL ALA GLY THR ALA ASN ALA ALA GLU ILE TYR SEQRES 3 A 362 ASN LYS ASP GLY ASN LYS VAL ASP LEU TYR GLY LYS ALA SEQRES 4 A 362 VAL GLY LEU HIS TYR PHE SER LYS GLY ASN GLY GLU ASN SEQRES 5 A 362 SER TYR GLY GLY ASN GLY ASP MET THR TYR ALA ARG LEU SEQRES 6 A 362 GLY PHE LYS GLY GLU THR GLN ILE ASN SER ASP LEU THR SEQRES 7 A 362 GLY TYR GLY GLN TRP GLU TYR ASN PHE GLN GLY ASN ASN SEQRES 8 A 362 SER GLU GLY ALA ASP ALA GLN THR GLY ASN LYS THR ARG SEQRES 9 A 362 LEU ALA PHE ALA GLY LEU LYS TYR ALA ASP VAL GLY SER SEQRES 10 A 362 PHE ASP TYR GLY ARG ASN TYR GLY VAL VAL TYR ASP ALA SEQRES 11 A 362 LEU GLY TYR THR ASP MET LEU PRO GLU PHE GLY GLY ASP SEQRES 12 A 362 THR ALA TYR SER ASP ASP PHE PHE VAL GLY ARG VAL GLY SEQRES 13 A 362 GLY VAL ALA THR TYR ARG ASN SER ASN PHE PHE GLY LEU SEQRES 14 A 362 VAL ASP GLY LEU ASN PHE ALA VAL GLN TYR LEU GLY LYS SEQRES 15 A 362 ASN GLU ARG ASP THR ALA ARG ARG SER ASN GLY ASP GLY SEQRES 16 A 362 VAL GLY GLY SER ILE SER TYR GLU TYR GLU GLY PHE GLY SEQRES 17 A 362 ILE VAL GLY ALA TYR GLY ALA ALA ASP ARG THR ASN LEU SEQRES 18 A 362 GLN GLU ALA GLN PRO LEU GLY ASN GLY LYS LYS ALA GLU SEQRES 19 A 362 GLN TRP ALA THR GLY LEU LYS TYR ASP ALA ASN ASN ILE SEQRES 20 A 362 TYR LEU ALA ALA ASN TYR GLY GLU THR ARG ASN ALA THR SEQRES 21 A 362 PRO ILE THR ASN LYS PHE THR ASN THR SER GLY PHE ALA SEQRES 22 A 362 ASN LYS THR GLN ASP VAL LEU LEU VAL ALA GLN TYR GLN SEQRES 23 A 362 PHE ASP PHE GLY LEU ARG PRO SER ILE ALA TYR THR LYS SEQRES 24 A 362 SER LYS ALA LYS ASP VAL GLU GLY ILE GLY ASP VAL ASP SEQRES 25 A 362 LEU VAL ASN TYR PHE GLU VAL GLY ALA THR TYR TYR PHE SEQRES 26 A 362 ASN LYS ASN MET SER THR TYR VAL ASP TYR ILE ILE ASN SEQRES 27 A 362 GLN ILE ASP SER ASP ASN LYS LEU GLY VAL GLY SER ASP SEQRES 28 A 362 ASP THR VAL ALA VAL GLY ILE VAL TYR GLN PHE SEQRES 1 B 362 MET MET LYS ARG ASN ILE LEU ALA VAL ILE VAL PRO ALA SEQRES 2 B 362 LEU LEU VAL ALA GLY THR ALA ASN ALA ALA GLU ILE TYR SEQRES 3 B 362 ASN LYS ASP GLY ASN LYS VAL ASP LEU TYR GLY LYS ALA SEQRES 4 B 362 VAL GLY LEU HIS TYR PHE SER LYS GLY ASN GLY GLU ASN SEQRES 5 B 362 SER TYR GLY GLY ASN GLY ASP MET THR TYR ALA ARG LEU SEQRES 6 B 362 GLY PHE LYS GLY GLU THR GLN ILE ASN SER ASP LEU THR SEQRES 7 B 362 GLY TYR GLY GLN TRP GLU TYR ASN PHE GLN GLY ASN ASN SEQRES 8 B 362 SER GLU GLY ALA ASP ALA GLN THR GLY ASN LYS THR ARG SEQRES 9 B 362 LEU ALA PHE ALA GLY LEU LYS TYR ALA ASP VAL GLY SER SEQRES 10 B 362 PHE ASP TYR GLY ARG ASN TYR GLY VAL VAL TYR ASP ALA SEQRES 11 B 362 LEU GLY TYR THR ASP MET LEU PRO GLU PHE GLY GLY ASP SEQRES 12 B 362 THR ALA TYR SER ASP ASP PHE PHE VAL GLY ARG VAL GLY SEQRES 13 B 362 GLY VAL ALA THR TYR ARG ASN SER ASN PHE PHE GLY LEU SEQRES 14 B 362 VAL ASP GLY LEU ASN PHE ALA VAL GLN TYR LEU GLY LYS SEQRES 15 B 362 ASN GLU ARG ASP THR ALA ARG ARG SER ASN GLY ASP GLY SEQRES 16 B 362 VAL GLY GLY SER ILE SER TYR GLU TYR GLU GLY PHE GLY SEQRES 17 B 362 ILE VAL GLY ALA TYR GLY ALA ALA ASP ARG THR ASN LEU SEQRES 18 B 362 GLN GLU ALA GLN PRO LEU GLY ASN GLY LYS LYS ALA GLU SEQRES 19 B 362 GLN TRP ALA THR GLY LEU LYS TYR ASP ALA ASN ASN ILE SEQRES 20 B 362 TYR LEU ALA ALA ASN TYR GLY GLU THR ARG ASN ALA THR SEQRES 21 B 362 PRO ILE THR ASN LYS PHE THR ASN THR SER GLY PHE ALA SEQRES 22 B 362 ASN LYS THR GLN ASP VAL LEU LEU VAL ALA GLN TYR GLN SEQRES 23 B 362 PHE ASP PHE GLY LEU ARG PRO SER ILE ALA TYR THR LYS SEQRES 24 B 362 SER LYS ALA LYS ASP VAL GLU GLY ILE GLY ASP VAL ASP SEQRES 25 B 362 LEU VAL ASN TYR PHE GLU VAL GLY ALA THR TYR TYR PHE SEQRES 26 B 362 ASN LYS ASN MET SER THR TYR VAL ASP TYR ILE ILE ASN SEQRES 27 B 362 GLN ILE ASP SER ASP ASN LYS LEU GLY VAL GLY SER ASP SEQRES 28 B 362 ASP THR VAL ALA VAL GLY ILE VAL TYR GLN PHE HET P6G A 341 19 HET K A 342 1 HET CL A 343 1 HET P6G B 341 19 HET K B 342 1 HET K B 343 1 HET K B 344 1 HET CL B 345 1 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 P6G 2(C12 H26 O7) FORMUL 4 K 4(K 1+) FORMUL 5 CL 2(CL 1-) FORMUL 11 HOH *134(H2 O) HELIX 1 1 VAL A 105 GLY A 110 1 6 HELIX 2 2 SER A 142 LEU A 147 1 6 HELIX 3 3 THR A 197 ALA A 202 1 6 HELIX 4 4 VAL B 105 GLY B 110 1 6 HELIX 5 5 SER B 142 VAL B 148 1 7 HELIX 6 6 THR B 197 ALA B 202 1 6 SHEET 1 A19 GLU A 2 LYS A 6 0 SHEET 2 A19 GLY A 36 ASP A 37 0 SHEET 3 A19 TYR A 40 GLN A 50 0 SHEET 4 A19 LEU A 55 GLN A 66 -1 O PHE A 65 N ALA A 41 SHEET 5 A19 LYS A 80 TYR A 90 -1 O LYS A 89 N THR A 56 SHEET 6 A19 GLY A 94 TYR A 102 -1 O ARG A 100 N ALA A 84 SHEET 7 A19 ARG A 132 ASN A 141 -1 O ARG A 140 N SER A 95 SHEET 8 A19 ASN A 152 LEU A 158 -1 O VAL A 155 N TYR A 139 SHEET 9 A19 GLY A 173 TYR A 182 -1 O SER A 179 N ASN A 152 SHEET 10 A19 PHE A 185 ASP A 195 -1 O ILE A 187 N TYR A 180 SHEET 11 A19 LYS A 210 ALA A 222 -1 O ALA A 211 N ALA A 194 SHEET 12 A19 ILE A 225 ARG A 235 -1 O ARG A 235 N GLU A 212 SHEET 13 A19 LYS A 253 TYR A 263 -1 O ASP A 256 N GLY A 232 SHEET 14 A19 LEU A 269 VAL A 283 -1 O LYS A 281 N LYS A 253 SHEET 15 A19 GLY A 287 TYR A 302 -1 O VAL A 289 N ALA A 280 SHEET 16 A19 MET A 307 ASN A 316 -1 O ILE A 315 N PHE A 295 SHEET 17 A19 THR A 331 PHE A 340 -1 O VAL A 337 N SER A 308 SHEET 18 A19 ASN A 9 PHE A 23 -1 N GLY A 19 O ILE A 336 SHEET 19 A19 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 SHEET 1 B 2 PRO A 239 ASN A 242 0 SHEET 2 B 2 THR A 247 PHE A 250 -1 O THR A 247 N ASN A 242 SHEET 1 C19 GLU B 2 LYS B 6 0 SHEET 2 C19 GLY B 36 ASP B 37 0 SHEET 3 C19 TYR B 40 GLN B 50 0 SHEET 4 C19 LEU B 55 GLN B 66 -1 O PHE B 65 N ALA B 41 SHEET 5 C19 LYS B 80 TYR B 90 -1 O LYS B 89 N THR B 56 SHEET 6 C19 GLY B 94 TYR B 102 -1 O ARG B 100 N ALA B 84 SHEET 7 C19 ARG B 132 ARG B 140 -1 O ARG B 140 N SER B 95 SHEET 8 C19 ASN B 152 LEU B 158 -1 O VAL B 155 N TYR B 139 SHEET 9 C19 GLY B 173 TYR B 182 -1 O SER B 179 N ASN B 152 SHEET 10 C19 PHE B 185 ASP B 195 -1 O TYR B 191 N GLY B 176 SHEET 11 C19 LYS B 210 ALA B 222 -1 O ALA B 211 N ALA B 194 SHEET 12 C19 ILE B 225 ARG B 235 -1 O ARG B 235 N GLU B 212 SHEET 13 C19 LYS B 253 TYR B 263 -1 O LEU B 258 N ASN B 230 SHEET 14 C19 LEU B 269 VAL B 283 -1 O LYS B 281 N LYS B 253 SHEET 15 C19 GLY B 287 TYR B 302 -1 O VAL B 292 N SER B 278 SHEET 16 C19 MET B 307 ASN B 316 -1 O ILE B 315 N PHE B 295 SHEET 17 C19 THR B 331 PHE B 340 -1 O VAL B 337 N SER B 308 SHEET 18 C19 ASN B 9 PHE B 23 -1 N PHE B 23 O VAL B 332 SHEET 19 C19 GLY B 36 ASP B 37 -1 O GLY B 36 N TYR B 22 SHEET 1 D 2 PRO B 239 ASN B 242 0 SHEET 2 D 2 THR B 247 PHE B 250 -1 O THR B 247 N ASN B 242 SITE 1 AC1 11 TYR A 106 ASP A 113 MET A 114 LEU A 115 SITE 2 AC1 11 GLU A 117 GLY A 119 ALA A 123 GLN A 262 SITE 3 AC1 11 ARG A 270 TYR A 302 CL A 343 SITE 1 AC2 1 HOH A 410 SITE 1 AC3 3 ARG A 82 ARG A 132 P6G A 341 SITE 1 AC4 7 ASP B 113 MET B 114 LEU B 115 ARG B 270 SITE 2 AC4 7 TYR B 302 HOH B 346 HOH B 357 SITE 1 AC5 3 GLU B 117 HOH B 350 HOH B 404 SITE 1 AC6 2 LYS B 16 TYR B 40 SITE 1 AC7 4 ASN B 316 ILE B 318 SER B 328 HOH B 353 SITE 1 AC8 1 HOH B 351 CRYST1 117.545 117.545 121.287 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008507 0.004912 0.000000 0.00000 SCALE2 0.000000 0.009823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008245 0.00000