data_3HWU # _entry.id 3HWU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HWU pdb_00003hwu 10.2210/pdb3hwu/pdb RCSB RCSB053679 ? ? WWPDB D_1000053679 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396389 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3HWU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative DNA-binding protein (YP_299413.1) from Ralstonia eutropha JMP134 at 1.30 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3HWU _cell.length_a 53.897 _cell.length_b 53.897 _cell.length_c 111.100 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 9 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HWU _symmetry.Int_Tables_number 146 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative DNA-binding protein' 16387.719 1 ? ? 'sequence database residues 28-173' ? 2 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQELKGKY(MSE)KTPTGYL(MSE)VLRHGDNVLQNLEQLARDEHIPSASFVGIGF(MSE)SEATFGFYDFGRKQFDPKT YRNVE(MSE)AN(MSE)TGSIAWKEGKPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRLDRFVDPEIQAN VLGLPQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GQELKGKYMKTPTGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGS IAWKEGKPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRLDRFVDPEIQANVLGLPQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396389 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLU n 1 4 LEU n 1 5 LYS n 1 6 GLY n 1 7 LYS n 1 8 TYR n 1 9 MSE n 1 10 LYS n 1 11 THR n 1 12 PRO n 1 13 THR n 1 14 GLY n 1 15 TYR n 1 16 LEU n 1 17 MSE n 1 18 VAL n 1 19 LEU n 1 20 ARG n 1 21 HIS n 1 22 GLY n 1 23 ASP n 1 24 ASN n 1 25 VAL n 1 26 LEU n 1 27 GLN n 1 28 ASN n 1 29 LEU n 1 30 GLU n 1 31 GLN n 1 32 LEU n 1 33 ALA n 1 34 ARG n 1 35 ASP n 1 36 GLU n 1 37 HIS n 1 38 ILE n 1 39 PRO n 1 40 SER n 1 41 ALA n 1 42 SER n 1 43 PHE n 1 44 VAL n 1 45 GLY n 1 46 ILE n 1 47 GLY n 1 48 PHE n 1 49 MSE n 1 50 SER n 1 51 GLU n 1 52 ALA n 1 53 THR n 1 54 PHE n 1 55 GLY n 1 56 PHE n 1 57 TYR n 1 58 ASP n 1 59 PHE n 1 60 GLY n 1 61 ARG n 1 62 LYS n 1 63 GLN n 1 64 PHE n 1 65 ASP n 1 66 PRO n 1 67 LYS n 1 68 THR n 1 69 TYR n 1 70 ARG n 1 71 ASN n 1 72 VAL n 1 73 GLU n 1 74 MSE n 1 75 ALA n 1 76 ASN n 1 77 MSE n 1 78 THR n 1 79 GLY n 1 80 SER n 1 81 ILE n 1 82 ALA n 1 83 TRP n 1 84 LYS n 1 85 GLU n 1 86 GLY n 1 87 LYS n 1 88 PRO n 1 89 SER n 1 90 ILE n 1 91 HIS n 1 92 ALA n 1 93 HIS n 1 94 GLY n 1 95 THR n 1 96 VAL n 1 97 THR n 1 98 ASP n 1 99 GLY n 1 100 THR n 1 101 PHE n 1 102 GLN n 1 103 GLY n 1 104 ALA n 1 105 GLY n 1 106 GLY n 1 107 HIS n 1 108 LEU n 1 109 LEU n 1 110 GLY n 1 111 LEU n 1 112 THR n 1 113 VAL n 1 114 GLY n 1 115 THR n 1 116 GLY n 1 117 SER n 1 118 CYS n 1 119 GLU n 1 120 ILE n 1 121 THR n 1 122 VAL n 1 123 THR n 1 124 VAL n 1 125 TYR n 1 126 PRO n 1 127 GLN n 1 128 ARG n 1 129 LEU n 1 130 ASP n 1 131 ARG n 1 132 PHE n 1 133 VAL n 1 134 ASP n 1 135 PRO n 1 136 GLU n 1 137 ILE n 1 138 GLN n 1 139 ALA n 1 140 ASN n 1 141 VAL n 1 142 LEU n 1 143 GLY n 1 144 LEU n 1 145 PRO n 1 146 GLN n 1 147 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Reut_B5223, YP_299413.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain JMP134 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ralstonia eutropha' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 264198 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q46QL5_RALEJ _struct_ref.pdbx_db_accession Q46QL5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QELKGKYMKTPTGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSI AWKEGKPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRLDRFVDPEIQANVLGLPQQ ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HWU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q46QL5 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 173 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HWU _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q46QL5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3HWU # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NaCl, 20.0000% PEG-1000, 0.1M Na,K-Phosphate pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-03-19 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97929 1.0 3 0.97918 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97929,0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3HWU _reflns.d_resolution_high 1.30 _reflns.d_resolution_low 26.948 _reflns.number_obs 29085 _reflns.pdbx_Rmerge_I_obs 0.028 _reflns.percent_possible_obs 91.600 _reflns.B_iso_Wilson_estimate 11.177 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.780 _reflns.pdbx_redundancy 2.71 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.30 1.35 5315 ? 4046 0.258 2.4 ? ? ? ? ? 64.00 1 1 1.35 1.40 6909 ? 4731 0.209 3.2 ? ? ? ? ? 86.80 2 1 1.40 1.46 7911 ? 5410 0.154 4.1 ? ? ? ? ? 94.80 3 1 1.46 1.54 8557 ? 5840 0.109 5.8 ? ? ? ? ? 95.10 4 1 1.54 1.64 8607 ? 5872 0.073 8.0 ? ? ? ? ? 95.50 5 1 1.64 1.76 7857 ? 5354 0.058 10.3 ? ? ? ? ? 95.80 6 1 1.76 1.94 8560 ? 5845 0.036 15.4 ? ? ? ? ? 96.20 7 1 1.94 2.22 8334 ? 5687 0.025 22.2 ? ? ? ? ? 96.20 8 1 2.22 2.80 8406 ? 5742 0.021 26.5 ? ? ? ? ? 96.30 9 1 2.80 26.948 8447 ? 5755 0.017 34.1 ? ? ? ? ? 96.60 10 1 # _refine.entry_id 3HWU _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 26.948 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.580 _refine.ls_number_reflns_obs 29085 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.UNKNOWN ELECTRON DENSITY IS OBSERVED NEAR RESIDUE 117, 119 AND 133 DURING REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.121 _refine.ls_R_factor_R_work 0.119 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.140 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1490 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.307 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.200 _refine.aniso_B[2][2] 0.200 _refine.aniso_B[3][3] -0.300 _refine.aniso_B[1][2] 0.100 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.976 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.049 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.overall_SU_ML 0.025 _refine.overall_SU_B 1.308 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 50.94 _refine.B_iso_min 3.57 _refine.occupancy_max 1.00 _refine.occupancy_min 0.20 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1101 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 1256 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 26.948 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1284 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 858 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1761 1.644 1.950 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2098 0.845 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 175 6.584 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 61 37.949 24.098 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 209 12.956 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 8 11.397 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 183 0.103 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1548 0.009 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 275 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 217 0.205 0.300 ? ? r_nbd_other 'X-RAY DIFFRACTION' 903 0.207 0.300 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 624 0.175 0.500 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 712 0.089 0.500 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 222 0.197 0.500 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 18 0.135 0.300 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 37 0.312 0.300 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 50 0.308 0.500 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 863 1.833 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 333 0.719 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1315 2.304 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 518 3.431 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 446 4.475 4.500 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 2402 1.899 3.000 ? ? r_sphericity_free 'X-RAY DIFFRACTION' 159 9.758 3.000 ? ? r_sphericity_bonded 'X-RAY DIFFRACTION' 2100 3.917 3.000 ? ? # _refine_ls_shell.d_res_high 1.302 _refine_ls_shell.d_res_low 1.336 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.830 _refine_ls_shell.number_reflns_R_work 1833 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.R_factor_R_free 0.210 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 107 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1940 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HWU _struct.title 'Crystal structure of Putative DNA-binding protein (YP_299413.1) from Ralstonia eutrophA JMP134 at 1.30 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_299413.1, Putative DNA-binding protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Domain of unknown function (DUF296), Unknown function ; _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown function' _struct_keywords.entry_id 3HWU # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A TRIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 24 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 36 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 50 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 62 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 8 C ? ? ? 1_555 A MSE 9 N ? ? A TYR 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 9 C ? ? ? 1_555 A LYS 10 N ? ? A MSE 35 A LYS 36 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale3 covale both ? A LEU 16 C ? ? ? 1_555 A MSE 17 N A ? A LEU 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A LEU 16 C ? ? ? 1_555 A MSE 17 N B ? A LEU 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A MSE 17 C A ? ? 1_555 A VAL 18 N ? ? A MSE 43 A VAL 44 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale6 covale both ? A MSE 17 C B ? ? 1_555 A VAL 18 N ? ? A MSE 43 A VAL 44 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A PHE 48 C ? ? ? 1_555 A MSE 49 N ? ? A PHE 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A MSE 49 C ? ? ? 1_555 A SER 50 N ? ? A MSE 75 A SER 76 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale9 covale both ? A GLU 73 C ? ? ? 1_555 A MSE 74 N ? ? A GLU 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale10 covale both ? A MSE 74 C ? ? ? 1_555 A ALA 75 N ? ? A MSE 100 A ALA 101 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? A ASN 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASN 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? A MSE 77 C ? ? ? 1_555 A THR 78 N ? ? A MSE 103 A THR 104 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 8 ? THR A 11 ? TYR A 34 THR A 37 A 2 GLY A 14 ? ARG A 20 ? GLY A 40 ARG A 46 A 3 GLY A 103 ? TYR A 125 ? GLY A 129 TYR A 151 A 4 LYS A 87 ? THR A 97 ? LYS A 113 THR A 123 A 5 GLN A 63 ? LYS A 84 ? GLN A 89 LYS A 110 A 6 SER A 40 ? ASP A 58 ? SER A 66 ASP A 84 A 7 GLY A 103 ? TYR A 125 ? GLY A 129 TYR A 151 B 1 ARG A 131 ? VAL A 133 ? ARG A 157 VAL A 159 B 2 ASN A 140 ? LEU A 142 ? ASN A 166 LEU A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 11 ? N THR A 37 O GLY A 14 ? O GLY A 40 A 2 3 N TYR A 15 ? N TYR A 41 O VAL A 122 ? O VAL A 148 A 3 4 O ALA A 104 ? O ALA A 130 N VAL A 96 ? N VAL A 122 A 4 5 O SER A 89 ? O SER A 115 N ALA A 82 ? N ALA A 108 A 5 6 O MSE A 74 ? O MSE A 100 N GLY A 47 ? N GLY A 73 A 6 7 N THR A 53 ? N THR A 79 O GLY A 110 ? O GLY A 136 B 1 2 N PHE A 132 ? N PHE A 158 O VAL A 141 ? O VAL A 167 # _atom_sites.entry_id 3HWU _atom_sites.fract_transf_matrix[1][1] 0.018554 _atom_sites.fract_transf_matrix[1][2] 0.010712 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021424 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 28 28 GLN GLN A . n A 1 3 GLU 3 29 29 GLU GLU A . n A 1 4 LEU 4 30 30 LEU LEU A . n A 1 5 LYS 5 31 31 LYS LYS A . n A 1 6 GLY 6 32 32 GLY GLY A . n A 1 7 LYS 7 33 33 LYS LYS A . n A 1 8 TYR 8 34 34 TYR TYR A . n A 1 9 MSE 9 35 35 MSE MSE A . n A 1 10 LYS 10 36 36 LYS LYS A . n A 1 11 THR 11 37 37 THR THR A . n A 1 12 PRO 12 38 38 PRO PRO A . n A 1 13 THR 13 39 39 THR THR A . n A 1 14 GLY 14 40 40 GLY GLY A . n A 1 15 TYR 15 41 41 TYR TYR A . n A 1 16 LEU 16 42 42 LEU LEU A . n A 1 17 MSE 17 43 43 MSE MSE A . n A 1 18 VAL 18 44 44 VAL VAL A . n A 1 19 LEU 19 45 45 LEU LEU A . n A 1 20 ARG 20 46 46 ARG ARG A . n A 1 21 HIS 21 47 47 HIS HIS A . n A 1 22 GLY 22 48 48 GLY GLY A . n A 1 23 ASP 23 49 49 ASP ASP A . n A 1 24 ASN 24 50 50 ASN ASN A . n A 1 25 VAL 25 51 51 VAL VAL A . n A 1 26 LEU 26 52 52 LEU LEU A . n A 1 27 GLN 27 53 53 GLN GLN A . n A 1 28 ASN 28 54 54 ASN ASN A . n A 1 29 LEU 29 55 55 LEU LEU A . n A 1 30 GLU 30 56 56 GLU GLU A . n A 1 31 GLN 31 57 57 GLN GLN A . n A 1 32 LEU 32 58 58 LEU LEU A . n A 1 33 ALA 33 59 59 ALA ALA A . n A 1 34 ARG 34 60 60 ARG ARG A . n A 1 35 ASP 35 61 61 ASP ASP A . n A 1 36 GLU 36 62 62 GLU GLU A . n A 1 37 HIS 37 63 63 HIS HIS A . n A 1 38 ILE 38 64 64 ILE ILE A . n A 1 39 PRO 39 65 65 PRO PRO A . n A 1 40 SER 40 66 66 SER SER A . n A 1 41 ALA 41 67 67 ALA ALA A . n A 1 42 SER 42 68 68 SER SER A . n A 1 43 PHE 43 69 69 PHE PHE A . n A 1 44 VAL 44 70 70 VAL VAL A . n A 1 45 GLY 45 71 71 GLY GLY A . n A 1 46 ILE 46 72 72 ILE ILE A . n A 1 47 GLY 47 73 73 GLY GLY A . n A 1 48 PHE 48 74 74 PHE PHE A . n A 1 49 MSE 49 75 75 MSE MSE A . n A 1 50 SER 50 76 76 SER SER A . n A 1 51 GLU 51 77 77 GLU GLU A . n A 1 52 ALA 52 78 78 ALA ALA A . n A 1 53 THR 53 79 79 THR THR A . n A 1 54 PHE 54 80 80 PHE PHE A . n A 1 55 GLY 55 81 81 GLY GLY A . n A 1 56 PHE 56 82 82 PHE PHE A . n A 1 57 TYR 57 83 83 TYR TYR A . n A 1 58 ASP 58 84 84 ASP ASP A . n A 1 59 PHE 59 85 85 PHE PHE A . n A 1 60 GLY 60 86 86 GLY GLY A . n A 1 61 ARG 61 87 87 ARG ARG A . n A 1 62 LYS 62 88 88 LYS LYS A . n A 1 63 GLN 63 89 89 GLN GLN A . n A 1 64 PHE 64 90 90 PHE PHE A . n A 1 65 ASP 65 91 91 ASP ASP A . n A 1 66 PRO 66 92 92 PRO PRO A . n A 1 67 LYS 67 93 93 LYS LYS A . n A 1 68 THR 68 94 94 THR THR A . n A 1 69 TYR 69 95 95 TYR TYR A . n A 1 70 ARG 70 96 96 ARG ARG A . n A 1 71 ASN 71 97 97 ASN ASN A . n A 1 72 VAL 72 98 98 VAL VAL A . n A 1 73 GLU 73 99 99 GLU GLU A . n A 1 74 MSE 74 100 100 MSE MSE A . n A 1 75 ALA 75 101 101 ALA ALA A . n A 1 76 ASN 76 102 102 ASN ASN A . n A 1 77 MSE 77 103 103 MSE MSE A . n A 1 78 THR 78 104 104 THR THR A . n A 1 79 GLY 79 105 105 GLY GLY A . n A 1 80 SER 80 106 106 SER SER A . n A 1 81 ILE 81 107 107 ILE ILE A . n A 1 82 ALA 82 108 108 ALA ALA A . n A 1 83 TRP 83 109 109 TRP TRP A . n A 1 84 LYS 84 110 110 LYS LYS A . n A 1 85 GLU 85 111 111 GLU GLU A . n A 1 86 GLY 86 112 112 GLY GLY A . n A 1 87 LYS 87 113 113 LYS LYS A . n A 1 88 PRO 88 114 114 PRO PRO A . n A 1 89 SER 89 115 115 SER SER A . n A 1 90 ILE 90 116 116 ILE ILE A . n A 1 91 HIS 91 117 117 HIS HIS A . n A 1 92 ALA 92 118 118 ALA ALA A . n A 1 93 HIS 93 119 119 HIS HIS A . n A 1 94 GLY 94 120 120 GLY GLY A . n A 1 95 THR 95 121 121 THR THR A . n A 1 96 VAL 96 122 122 VAL VAL A . n A 1 97 THR 97 123 123 THR THR A . n A 1 98 ASP 98 124 124 ASP ASP A . n A 1 99 GLY 99 125 125 GLY GLY A . n A 1 100 THR 100 126 126 THR THR A . n A 1 101 PHE 101 127 127 PHE PHE A . n A 1 102 GLN 102 128 128 GLN GLN A . n A 1 103 GLY 103 129 129 GLY GLY A . n A 1 104 ALA 104 130 130 ALA ALA A . n A 1 105 GLY 105 131 131 GLY GLY A . n A 1 106 GLY 106 132 132 GLY GLY A . n A 1 107 HIS 107 133 133 HIS HIS A . n A 1 108 LEU 108 134 134 LEU LEU A . n A 1 109 LEU 109 135 135 LEU LEU A . n A 1 110 GLY 110 136 136 GLY GLY A . n A 1 111 LEU 111 137 137 LEU LEU A . n A 1 112 THR 112 138 138 THR THR A . n A 1 113 VAL 113 139 139 VAL VAL A . n A 1 114 GLY 114 140 140 GLY GLY A . n A 1 115 THR 115 141 141 THR THR A . n A 1 116 GLY 116 142 142 GLY GLY A . n A 1 117 SER 117 143 143 SER SER A . n A 1 118 CYS 118 144 144 CYS CYS A . n A 1 119 GLU 119 145 145 GLU GLU A . n A 1 120 ILE 120 146 146 ILE ILE A . n A 1 121 THR 121 147 147 THR THR A . n A 1 122 VAL 122 148 148 VAL VAL A . n A 1 123 THR 123 149 149 THR THR A . n A 1 124 VAL 124 150 150 VAL VAL A . n A 1 125 TYR 125 151 151 TYR TYR A . n A 1 126 PRO 126 152 152 PRO PRO A . n A 1 127 GLN 127 153 153 GLN GLN A . n A 1 128 ARG 128 154 154 ARG ARG A . n A 1 129 LEU 129 155 155 LEU LEU A . n A 1 130 ASP 130 156 156 ASP ASP A . n A 1 131 ARG 131 157 157 ARG ARG A . n A 1 132 PHE 132 158 158 PHE PHE A . n A 1 133 VAL 133 159 159 VAL VAL A . n A 1 134 ASP 134 160 160 ASP ASP A . n A 1 135 PRO 135 161 161 PRO PRO A . n A 1 136 GLU 136 162 162 GLU GLU A . n A 1 137 ILE 137 163 163 ILE ILE A . n A 1 138 GLN 138 164 164 GLN GLN A . n A 1 139 ALA 139 165 165 ALA ALA A . n A 1 140 ASN 140 166 166 ASN ASN A . n A 1 141 VAL 141 167 167 VAL VAL A . n A 1 142 LEU 142 168 168 LEU LEU A . n A 1 143 GLY 143 169 169 GLY GLY A . n A 1 144 LEU 144 170 170 LEU LEU A . n A 1 145 PRO 145 171 171 PRO PRO A . n A 1 146 GLN 146 172 ? ? ? A . n A 1 147 GLN 147 173 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 174 27 HOH HOH A . B 2 HOH 28 175 28 HOH HOH A . B 2 HOH 29 176 29 HOH HOH A . B 2 HOH 30 177 30 HOH HOH A . B 2 HOH 31 178 31 HOH HOH A . B 2 HOH 32 179 32 HOH HOH A . B 2 HOH 33 180 33 HOH HOH A . B 2 HOH 34 181 34 HOH HOH A . B 2 HOH 35 182 35 HOH HOH A . B 2 HOH 36 183 36 HOH HOH A . B 2 HOH 37 184 37 HOH HOH A . B 2 HOH 38 185 38 HOH HOH A . B 2 HOH 39 186 39 HOH HOH A . B 2 HOH 40 187 40 HOH HOH A . B 2 HOH 41 188 41 HOH HOH A . B 2 HOH 42 189 42 HOH HOH A . B 2 HOH 43 190 43 HOH HOH A . B 2 HOH 44 191 44 HOH HOH A . B 2 HOH 45 192 45 HOH HOH A . B 2 HOH 46 193 46 HOH HOH A . B 2 HOH 47 194 47 HOH HOH A . B 2 HOH 48 195 48 HOH HOH A . B 2 HOH 49 196 49 HOH HOH A . B 2 HOH 50 197 50 HOH HOH A . B 2 HOH 51 198 51 HOH HOH A . B 2 HOH 52 199 52 HOH HOH A . B 2 HOH 53 200 53 HOH HOH A . B 2 HOH 54 201 54 HOH HOH A . B 2 HOH 55 202 55 HOH HOH A . B 2 HOH 56 203 56 HOH HOH A . B 2 HOH 57 204 57 HOH HOH A . B 2 HOH 58 205 58 HOH HOH A . B 2 HOH 59 206 59 HOH HOH A . B 2 HOH 60 207 60 HOH HOH A . B 2 HOH 61 208 61 HOH HOH A . B 2 HOH 62 209 62 HOH HOH A . B 2 HOH 63 210 63 HOH HOH A . B 2 HOH 64 211 64 HOH HOH A . B 2 HOH 65 212 65 HOH HOH A . B 2 HOH 66 213 66 HOH HOH A . B 2 HOH 67 214 67 HOH HOH A . B 2 HOH 68 215 68 HOH HOH A . B 2 HOH 69 216 69 HOH HOH A . B 2 HOH 70 217 70 HOH HOH A . B 2 HOH 71 218 71 HOH HOH A . B 2 HOH 72 219 72 HOH HOH A . B 2 HOH 73 220 73 HOH HOH A . B 2 HOH 74 221 74 HOH HOH A . B 2 HOH 75 222 75 HOH HOH A . B 2 HOH 76 223 76 HOH HOH A . B 2 HOH 77 224 77 HOH HOH A . B 2 HOH 78 225 78 HOH HOH A . B 2 HOH 79 226 79 HOH HOH A . B 2 HOH 80 227 80 HOH HOH A . B 2 HOH 81 228 81 HOH HOH A . B 2 HOH 82 229 82 HOH HOH A . B 2 HOH 83 230 83 HOH HOH A . B 2 HOH 84 231 84 HOH HOH A . B 2 HOH 85 232 85 HOH HOH A . B 2 HOH 86 233 86 HOH HOH A . B 2 HOH 87 234 87 HOH HOH A . B 2 HOH 88 235 88 HOH HOH A . B 2 HOH 89 236 89 HOH HOH A . B 2 HOH 90 237 90 HOH HOH A . B 2 HOH 91 238 91 HOH HOH A . B 2 HOH 92 239 92 HOH HOH A . B 2 HOH 93 240 93 HOH HOH A . B 2 HOH 94 241 94 HOH HOH A . B 2 HOH 95 242 95 HOH HOH A . B 2 HOH 96 243 96 HOH HOH A . B 2 HOH 97 244 97 HOH HOH A . B 2 HOH 98 245 98 HOH HOH A . B 2 HOH 99 246 99 HOH HOH A . B 2 HOH 100 247 100 HOH HOH A . B 2 HOH 101 248 101 HOH HOH A . B 2 HOH 102 249 102 HOH HOH A . B 2 HOH 103 250 103 HOH HOH A . B 2 HOH 104 251 104 HOH HOH A . B 2 HOH 105 252 105 HOH HOH A . B 2 HOH 106 253 106 HOH HOH A . B 2 HOH 107 254 107 HOH HOH A . B 2 HOH 108 255 108 HOH HOH A . B 2 HOH 109 256 109 HOH HOH A . B 2 HOH 110 257 110 HOH HOH A . B 2 HOH 111 258 111 HOH HOH A . B 2 HOH 112 259 112 HOH HOH A . B 2 HOH 113 260 113 HOH HOH A . B 2 HOH 114 261 114 HOH HOH A . B 2 HOH 115 262 115 HOH HOH A . B 2 HOH 116 263 116 HOH HOH A . B 2 HOH 117 264 117 HOH HOH A . B 2 HOH 118 265 118 HOH HOH A . B 2 HOH 119 266 119 HOH HOH A . B 2 HOH 120 267 120 HOH HOH A . B 2 HOH 121 268 121 HOH HOH A . B 2 HOH 122 269 122 HOH HOH A . B 2 HOH 123 270 123 HOH HOH A . B 2 HOH 124 271 124 HOH HOH A . B 2 HOH 125 272 125 HOH HOH A . B 2 HOH 126 273 126 HOH HOH A . B 2 HOH 127 274 127 HOH HOH A . B 2 HOH 128 275 128 HOH HOH A . B 2 HOH 129 276 129 HOH HOH A . B 2 HOH 130 277 130 HOH HOH A . B 2 HOH 131 278 131 HOH HOH A . B 2 HOH 132 279 132 HOH HOH A . B 2 HOH 133 280 133 HOH HOH A . B 2 HOH 134 281 134 HOH HOH A . B 2 HOH 135 282 135 HOH HOH A . B 2 HOH 136 283 136 HOH HOH A . B 2 HOH 137 284 137 HOH HOH A . B 2 HOH 138 285 138 HOH HOH A . B 2 HOH 139 286 139 HOH HOH A . B 2 HOH 140 287 140 HOH HOH A . B 2 HOH 141 288 141 HOH HOH A . B 2 HOH 142 289 142 HOH HOH A . B 2 HOH 143 290 143 HOH HOH A . B 2 HOH 144 291 144 HOH HOH A . B 2 HOH 145 292 145 HOH HOH A . B 2 HOH 146 293 146 HOH HOH A . B 2 HOH 147 294 147 HOH HOH A . B 2 HOH 148 295 148 HOH HOH A . B 2 HOH 149 296 149 HOH HOH A . B 2 HOH 150 297 150 HOH HOH A . B 2 HOH 151 298 151 HOH HOH A . B 2 HOH 152 299 152 HOH HOH A . B 2 HOH 153 300 153 HOH HOH A . B 2 HOH 154 301 154 HOH HOH A . B 2 HOH 155 302 155 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 9 A MSE 35 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 49 A MSE 75 ? MET SELENOMETHIONINE 4 A MSE 74 A MSE 100 ? MET SELENOMETHIONINE 5 A MSE 77 A MSE 103 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7980 ? 1 MORE -62 ? 1 'SSA (A^2)' 16680 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 53.8970000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 26.9485000000 -0.8660254038 -0.5000000000 0.0000000000 46.6761711878 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 6 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3HWU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 28-173 OF THE FULL LENGTH PROTEIN. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 124 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -123.73 _pdbx_validate_torsion.psi -157.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 28 ? CG ? A GLN 2 CG 2 1 Y 1 A GLN 28 ? CD ? A GLN 2 CD 3 1 Y 1 A GLN 28 ? OE1 ? A GLN 2 OE1 4 1 Y 1 A GLN 28 ? NE2 ? A GLN 2 NE2 5 1 Y 1 A LYS 31 ? CD ? A LYS 5 CD 6 1 Y 1 A LYS 31 ? CE ? A LYS 5 CE 7 1 Y 1 A LYS 31 ? NZ ? A LYS 5 NZ 8 1 Y 1 A LYS 93 ? NZ ? A LYS 67 NZ 9 1 Y 1 A LYS 113 ? NZ ? A LYS 87 NZ 10 1 Y 1 A GLU 162 ? CD ? A GLU 136 CD 11 1 Y 1 A GLU 162 ? OE1 ? A GLU 136 OE1 12 1 Y 1 A GLU 162 ? OE2 ? A GLU 136 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 172 ? A GLN 146 3 1 Y 1 A GLN 173 ? A GLN 147 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #