data_3HXQ # _entry.id 3HXQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HXQ pdb_00003hxq 10.2210/pdb3hxq/pdb NDB NA0064 ? ? RCSB RCSB053711 ? ? WWPDB D_1000053711 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3HXO _pdbx_database_related.details 'The same protein and ARC1172 in Space Group P21212.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HXQ _pdbx_database_status.recvd_initial_deposition_date 2009-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, R.H.' 1 'Sadler, J.E.' 2 'Fremont, D.H.' 3 'Diener, J.L.' 4 'Schaub, R.G.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A structural explanation for the antithrombotic activity of ARC1172, a DNA aptamer that binds von Willebrand factor domain A1.' Structure 17 1476 1484 2009 STRUE6 UK 0969-2126 2005 ? 19913482 10.1016/j.str.2009.09.011 1 'First-in-human evaluation of anti von Willebrand factor therapeutic aptamer ARC1779 in healthy volunteers.' Circulation 116 2678 2686 2007 ? US 0009-7322 ? ? 18025536 10.1161/CIRCULATIONAHA.107.724864 2 ;Inhibition of von Willebrand factor-mediated platelet activation and thrombosis by the anti-von Willebrand factor A1-domain aptamer ARC1779. ; J.Thromb.Haemost. 7 1155 1162 2009 ? UK 1538-7933 ? ? 19422452 10.1111/j.1538-7836.2009.03459.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, R.H.' 1 ? primary 'Fremont, D.H.' 2 ? primary 'Diener, J.L.' 3 ? primary 'Schaub, R.G.' 4 ? primary 'Sadler, J.E.' 5 ? 1 'Gilbert, J.C.' 6 ? 1 'DeFeo-Fraulini, T.' 7 ? 1 'Hutabarat, R.M.' 8 ? 1 'Horvath, C.J.' 9 ? 1 'Merlino, P.G.' 10 ? 1 'Marsh, H.N.' 11 ? 1 'Healy, J.M.' 12 ? 1 'Boufakhreddine, S.' 13 ? 1 'Holohan, T.V.' 14 ? 1 'Schaub, R.G.' 15 ? 2 'Diener, J.L.' 16 ? 2 'Daniel Lagasse, H.A.' 17 ? 2 'Duerschmied, D.' 18 ? 2 'Merhi, Y.' 19 ? 2 'Tanguay, J.F.' 20 ? 2 'Hutabarat, R.' 21 ? 2 'Gilbert, J.' 22 ? 2 'Wagner, D.D.' 23 ? 2 'Schaub, R.' 24 ? # _cell.entry_id 3HXQ _cell.length_a 117.781 _cell.length_b 48.512 _cell.length_c 62.160 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HXQ _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'von Willebrand Factor' 23889.627 1 ? ? 'von Willebrand factor (VWF) A1 Domain (residues 1260-1468)' ? 2 polymer syn 'Aptamer ARC1172' 12884.188 1 ? ? 'Aptamer ARC1172' ? 3 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'vWF, von Willebrand antigen 2, von Willebrand antigen II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT ; ;EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT ; A ? 2 polydeoxyribonucleotide no no ;(DG)(DG)(DC)(DG)(DT)(DG)(DC)(DA)(DG)(DT)(DG)(DC)(DC)(DT)(DT)(DC)(DG)(DG)(DC)(DC) (DG)(DT)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DT)(DC)(DC)(DG)(DT)(DC)(DA)(DC)(DG)(DC) (DC)(DT) ; GGCGTGCAGTGCCTTCGGCCGTGCGGTGCCTCCGTCACGCCT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASP n 1 3 ILE n 1 4 SER n 1 5 GLU n 1 6 PRO n 1 7 PRO n 1 8 LEU n 1 9 HIS n 1 10 ASP n 1 11 PHE n 1 12 TYR n 1 13 CYS n 1 14 SER n 1 15 ARG n 1 16 LEU n 1 17 LEU n 1 18 ASP n 1 19 LEU n 1 20 VAL n 1 21 PHE n 1 22 LEU n 1 23 LEU n 1 24 ASP n 1 25 GLY n 1 26 SER n 1 27 SER n 1 28 ARG n 1 29 LEU n 1 30 SER n 1 31 GLU n 1 32 ALA n 1 33 GLU n 1 34 PHE n 1 35 GLU n 1 36 VAL n 1 37 LEU n 1 38 LYS n 1 39 ALA n 1 40 PHE n 1 41 VAL n 1 42 VAL n 1 43 ASP n 1 44 MET n 1 45 MET n 1 46 GLU n 1 47 ARG n 1 48 LEU n 1 49 ARG n 1 50 ILE n 1 51 SER n 1 52 GLN n 1 53 LYS n 1 54 TRP n 1 55 VAL n 1 56 ARG n 1 57 VAL n 1 58 ALA n 1 59 VAL n 1 60 VAL n 1 61 GLU n 1 62 TYR n 1 63 HIS n 1 64 ASP n 1 65 GLY n 1 66 SER n 1 67 HIS n 1 68 ALA n 1 69 TYR n 1 70 ILE n 1 71 GLY n 1 72 LEU n 1 73 LYS n 1 74 ASP n 1 75 ARG n 1 76 LYS n 1 77 ARG n 1 78 PRO n 1 79 SER n 1 80 GLU n 1 81 LEU n 1 82 ARG n 1 83 ARG n 1 84 ILE n 1 85 ALA n 1 86 SER n 1 87 GLN n 1 88 VAL n 1 89 LYS n 1 90 TYR n 1 91 ALA n 1 92 GLY n 1 93 SER n 1 94 GLN n 1 95 VAL n 1 96 ALA n 1 97 SER n 1 98 THR n 1 99 SER n 1 100 GLU n 1 101 VAL n 1 102 LEU n 1 103 LYS n 1 104 TYR n 1 105 THR n 1 106 LEU n 1 107 PHE n 1 108 GLN n 1 109 ILE n 1 110 PHE n 1 111 SER n 1 112 LYS n 1 113 ILE n 1 114 ASP n 1 115 ARG n 1 116 PRO n 1 117 GLU n 1 118 ALA n 1 119 SER n 1 120 ARG n 1 121 ILE n 1 122 ALA n 1 123 LEU n 1 124 LEU n 1 125 LEU n 1 126 MET n 1 127 ALA n 1 128 SER n 1 129 GLN n 1 130 GLU n 1 131 PRO n 1 132 GLN n 1 133 ARG n 1 134 MET n 1 135 SER n 1 136 ARG n 1 137 ASN n 1 138 PHE n 1 139 VAL n 1 140 ARG n 1 141 TYR n 1 142 VAL n 1 143 GLN n 1 144 GLY n 1 145 LEU n 1 146 LYS n 1 147 LYS n 1 148 LYS n 1 149 LYS n 1 150 VAL n 1 151 ILE n 1 152 VAL n 1 153 ILE n 1 154 PRO n 1 155 VAL n 1 156 GLY n 1 157 ILE n 1 158 GLY n 1 159 PRO n 1 160 HIS n 1 161 ALA n 1 162 ASN n 1 163 LEU n 1 164 LYS n 1 165 GLN n 1 166 ILE n 1 167 ARG n 1 168 LEU n 1 169 ILE n 1 170 GLU n 1 171 LYS n 1 172 GLN n 1 173 ALA n 1 174 PRO n 1 175 GLU n 1 176 ASN n 1 177 LYS n 1 178 ALA n 1 179 PHE n 1 180 VAL n 1 181 LEU n 1 182 SER n 1 183 SER n 1 184 VAL n 1 185 ASP n 1 186 GLU n 1 187 LEU n 1 188 GLU n 1 189 GLN n 1 190 GLN n 1 191 ARG n 1 192 ASP n 1 193 GLU n 1 194 ILE n 1 195 VAL n 1 196 SER n 1 197 TYR n 1 198 LEU n 1 199 CYS n 1 200 ASP n 1 201 LEU n 1 202 ALA n 1 203 PRO n 1 204 GLU n 1 205 ALA n 1 206 PRO n 1 207 PRO n 1 208 PRO n 1 209 THR n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DC n 2 14 DT n 2 15 DT n 2 16 DC n 2 17 DG n 2 18 DG n 2 19 DC n 2 20 DC n 2 21 DG n 2 22 DT n 2 23 DG n 2 24 DC n 2 25 DG n 2 26 DG n 2 27 DT n 2 28 DG n 2 29 DC n 2 30 DC n 2 31 DT n 2 32 DC n 2 33 DC n 2 34 DG n 2 35 DT n 2 36 DC n 2 37 DA n 2 38 DC n 2 39 DG n 2 40 DC n 2 41 DC n 2 42 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;ARC1172 is a DNA oligonucleotides that bind specific target molecules, identified by selection in vitro from large random sequence libraries (termed SELEX: systematic evolution of ligands by exponential enrichment) ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VWF_HUMAN P04275 1 ;EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT ; 1260 ? 2 PDB 3HXQ 3HXQ 2 GGCGTGCAGTGCCTTCGGCCGTGCGGDGTGCCTCCGTCACGCCT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3HXQ A 1 ? 209 ? P04275 1260 ? 1468 ? 497 705 2 2 3HXQ B 1 ? 42 ? 3HXQ 1 ? 42 ? 1 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HXQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 49.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M NH4Ac, 0.1 M NaAc, 30% PEG4000, pH 4.6, EVAPORATION, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-03-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3HXQ _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.000 _reflns.d_resolution_high 2.694 _reflns.number_obs 9819 _reflns.number_all ? _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.400 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.69 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 83.9 _reflns_shell.Rmerge_I_obs 0.31600 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.800 _reflns_shell.pdbx_redundancy 4.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HXQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.694 _refine.ls_d_res_low 38.0 _refine.pdbx_ls_sigma_F 1.50 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.440 _refine.ls_number_reflns_obs 9783 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_R_work 0.221 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.279 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.810 _refine.ls_number_reflns_R_free 471 _refine.ls_number_reflns_R_work 9312 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 63.419 _refine.solvent_model_param_bsol 44.193 _refine.solvent_model_param_ksol 0.311 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.440 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3HXO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 170.21 _refine.B_iso_min 17.48 _refine.pdbx_overall_phase_error 27.150 _refine.occupancy_max 1.00 _refine.occupancy_min 0.47 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1618 _refine_hist.pdbx_number_atoms_nucleic_acid 833 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 2553 _refine_hist.d_res_high 2.694 _refine_hist.d_res_low 38.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 2587 'X-RAY DIFFRACTION' ? f_angle_d 0.725 ? ? 3667 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 22.267 ? ? 1044 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 414 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 327 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6940 3.0837 2828 0.2935 89.00 0.3527 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.0837 3.8846 3103 0.2129 96.00 0.2535 . . 178 . . . . 'X-RAY DIFFRACTION' . 3.8846 38.2475 3381 0.1997 98.00 0.2638 . . 146 . . . . # _struct.entry_id 3HXQ _struct.title ;Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HXQ _struct_keywords.pdbx_keywords 'BLOOD CLOTTING/BLOOD CLOTTING REGULATOR' _struct_keywords.text ;ARC1779, VWF, Platelet Glycoprotein Ib, Aptamer, ARC1772, Blood coagulation, Cell adhesion, Cleavage on pair of basic residues, Disease mutation, Disulfide bond, Extracellular matrix, Glycoprotein, Hemostasis, Isopeptide bond, Secreted, von Willebrand disease, BLOOD CLOTTING-BLOOD CLOTTING REGULATOR COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 30 ? GLU A 46 ? SER A 526 GLU A 542 1 ? 17 HELX_P HELX_P2 2 ARG A 77 ? GLN A 87 ? ARG A 573 GLN A 583 1 ? 11 HELX_P HELX_P3 3 SER A 97 ? ILE A 109 ? SER A 593 ILE A 605 1 ? 13 HELX_P HELX_P4 4 PRO A 131 ? ARG A 136 ? PRO A 627 ARG A 632 5 ? 6 HELX_P HELX_P5 5 ASN A 137 ? LYS A 148 ? ASN A 633 LYS A 644 1 ? 12 HELX_P HELX_P6 6 ASN A 162 ? LYS A 171 ? ASN A 658 LYS A 667 1 ? 10 HELX_P HELX_P7 7 SER A 183 ? GLN A 190 ? SER A 679 GLN A 686 1 ? 8 HELX_P HELX_P8 8 GLN A 190 ? LEU A 201 ? GLN A 686 LEU A 697 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 199 SG ? ? A CYS 509 A CYS 695 1_555 ? ? ? ? ? ? ? 2.032 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 41 N3 ? ? B DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 41 O2 ? ? B DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 41 N4 ? ? B DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 40 N3 ? ? B DG 2 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 40 O2 ? ? B DG 2 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 40 N4 ? ? B DG 2 B DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 B DG 39 N1 ? ? B DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 B DG 39 O6 ? ? B DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DG 39 N2 ? ? B DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DC 38 N3 ? ? B DG 4 B DC 38 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 B DA 37 N1 ? ? B DT 5 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 B DA 37 N6 ? ? B DT 5 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DC 36 N3 ? ? B DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DC 36 O2 ? ? B DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DC 36 N4 ? ? B DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 8 N6 ? ? ? 1_555 B DG 21 N3 ? ? B DA 8 B DG 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? B DA 8 N7 ? ? ? 1_555 B DG 21 N2 ? ? B DA 8 B DG 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DC 20 N3 ? ? B DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DC 20 O2 ? ? B DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 O6 ? ? ? 1_555 B DC 20 N4 ? ? B DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 B DC 19 N3 ? ? B DG 11 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 B DC 19 O2 ? ? B DG 11 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 B DC 19 N4 ? ? B DG 11 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 12 N4 ? ? ? 1_555 B DG 18 O6 ? ? B DC 12 B DG 18 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog25 hydrog ? ? B DC 13 O2 ? ? ? 1_555 B DG 17 N2 ? ? B DC 13 B DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog26 hydrog ? ? B DT 22 O4 ? ? ? 1_555 B DT 31 N3 ? ? B DT 22 B DT 31 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog27 hydrog ? ? B DG 23 N1 ? ? ? 1_555 B DT 35 O2 ? ? B DG 23 B DT 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? B DG 23 O6 ? ? ? 1_555 B DT 35 N3 ? ? B DG 23 B DT 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? B DC 24 N3 ? ? ? 1_555 B DG 34 N1 ? ? B DC 24 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 24 N4 ? ? ? 1_555 B DG 34 O6 ? ? B DC 24 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 24 O2 ? ? ? 1_555 B DG 34 N2 ? ? B DC 24 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 25 O6 ? ? ? 1_555 B DC 32 N4 ? ? B DG 25 B DC 32 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog33 hydrog ? ? B DG 25 N1 ? ? ? 1_555 B DC 33 N3 ? ? B DG 25 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 25 N2 ? ? ? 1_555 B DC 33 O2 ? ? B DG 25 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 25 O6 ? ? ? 1_555 B DC 33 N4 ? ? B DG 25 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 26 N1 ? ? ? 1_555 B DC 32 N3 ? ? B DG 26 B DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 26 N2 ? ? ? 1_555 B DC 32 O2 ? ? B DG 26 B DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 26 O6 ? ? ? 1_555 B DC 32 N4 ? ? B DG 26 B DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DG 28 N2 ? ? ? 1_555 B DC 30 N3 ? ? B DG 28 B DC 30 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 66 ? GLY A 71 ? SER A 562 GLY A 567 A 2 VAL A 55 ? TYR A 62 ? VAL A 551 TYR A 558 A 3 LEU A 17 ? ASP A 24 ? LEU A 513 ASP A 520 A 4 SER A 119 ? MET A 126 ? SER A 615 MET A 622 A 5 VAL A 150 ? ILE A 157 ? VAL A 646 ILE A 653 A 6 PHE A 179 ? LEU A 181 ? PHE A 675 LEU A 677 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 67 ? O HIS A 563 N GLU A 61 ? N GLU A 557 A 2 3 O ARG A 56 ? O ARG A 552 N LEU A 19 ? N LEU A 515 A 3 4 N ASP A 18 ? N ASP A 514 O SER A 119 ? O SER A 615 A 4 5 N ALA A 122 ? N ALA A 618 O ILE A 151 ? O ILE A 647 A 5 6 N PRO A 154 ? N PRO A 650 O PHE A 179 ? O PHE A 675 # _database_PDB_matrix.entry_id 3HXQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HXQ _atom_sites.fract_transf_matrix[1][1] 0.008490 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020613 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016088 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 497 ? ? ? A . n A 1 2 ASP 2 498 ? ? ? A . n A 1 3 ILE 3 499 ? ? ? A . n A 1 4 SER 4 500 ? ? ? A . n A 1 5 GLU 5 501 ? ? ? A . n A 1 6 PRO 6 502 502 PRO PRO A . n A 1 7 PRO 7 503 503 PRO PRO A . n A 1 8 LEU 8 504 504 LEU LEU A . n A 1 9 HIS 9 505 505 HIS HIS A . n A 1 10 ASP 10 506 506 ASP ASP A . n A 1 11 PHE 11 507 507 PHE PHE A . n A 1 12 TYR 12 508 508 TYR TYR A . n A 1 13 CYS 13 509 509 CYS CYS A . n A 1 14 SER 14 510 510 SER SER A . n A 1 15 ARG 15 511 511 ARG ARG A . n A 1 16 LEU 16 512 512 LEU LEU A . n A 1 17 LEU 17 513 513 LEU LEU A . n A 1 18 ASP 18 514 514 ASP ASP A . n A 1 19 LEU 19 515 515 LEU LEU A . n A 1 20 VAL 20 516 516 VAL VAL A . n A 1 21 PHE 21 517 517 PHE PHE A . n A 1 22 LEU 22 518 518 LEU LEU A . n A 1 23 LEU 23 519 519 LEU LEU A . n A 1 24 ASP 24 520 520 ASP ASP A . n A 1 25 GLY 25 521 521 GLY GLY A . n A 1 26 SER 26 522 522 SER SER A . n A 1 27 SER 27 523 523 SER SER A . n A 1 28 ARG 28 524 524 ARG ARG A . n A 1 29 LEU 29 525 525 LEU LEU A . n A 1 30 SER 30 526 526 SER SER A . n A 1 31 GLU 31 527 527 GLU GLU A . n A 1 32 ALA 32 528 528 ALA ALA A . n A 1 33 GLU 33 529 529 GLU GLU A . n A 1 34 PHE 34 530 530 PHE PHE A . n A 1 35 GLU 35 531 531 GLU GLU A . n A 1 36 VAL 36 532 532 VAL VAL A . n A 1 37 LEU 37 533 533 LEU LEU A . n A 1 38 LYS 38 534 534 LYS LYS A . n A 1 39 ALA 39 535 535 ALA ALA A . n A 1 40 PHE 40 536 536 PHE PHE A . n A 1 41 VAL 41 537 537 VAL VAL A . n A 1 42 VAL 42 538 538 VAL VAL A . n A 1 43 ASP 43 539 539 ASP ASP A . n A 1 44 MET 44 540 540 MET MET A . n A 1 45 MET 45 541 541 MET MET A . n A 1 46 GLU 46 542 542 GLU GLU A . n A 1 47 ARG 47 543 543 ARG ARG A . n A 1 48 LEU 48 544 544 LEU LEU A . n A 1 49 ARG 49 545 545 ARG ARG A . n A 1 50 ILE 50 546 546 ILE ILE A . n A 1 51 SER 51 547 547 SER SER A . n A 1 52 GLN 52 548 548 GLN GLN A . n A 1 53 LYS 53 549 549 LYS LYS A . n A 1 54 TRP 54 550 550 TRP TRP A . n A 1 55 VAL 55 551 551 VAL VAL A . n A 1 56 ARG 56 552 552 ARG ARG A . n A 1 57 VAL 57 553 553 VAL VAL A . n A 1 58 ALA 58 554 554 ALA ALA A . n A 1 59 VAL 59 555 555 VAL VAL A . n A 1 60 VAL 60 556 556 VAL VAL A . n A 1 61 GLU 61 557 557 GLU GLU A . n A 1 62 TYR 62 558 558 TYR TYR A . n A 1 63 HIS 63 559 559 HIS HIS A . n A 1 64 ASP 64 560 560 ASP ASP A . n A 1 65 GLY 65 561 561 GLY GLY A . n A 1 66 SER 66 562 562 SER SER A . n A 1 67 HIS 67 563 563 HIS HIS A . n A 1 68 ALA 68 564 564 ALA ALA A . n A 1 69 TYR 69 565 565 TYR TYR A . n A 1 70 ILE 70 566 566 ILE ILE A . n A 1 71 GLY 71 567 567 GLY GLY A . n A 1 72 LEU 72 568 568 LEU LEU A . n A 1 73 LYS 73 569 569 LYS LYS A . n A 1 74 ASP 74 570 570 ASP ASP A . n A 1 75 ARG 75 571 571 ARG ARG A . n A 1 76 LYS 76 572 572 LYS LYS A . n A 1 77 ARG 77 573 573 ARG ARG A . n A 1 78 PRO 78 574 574 PRO PRO A . n A 1 79 SER 79 575 575 SER SER A . n A 1 80 GLU 80 576 576 GLU GLU A . n A 1 81 LEU 81 577 577 LEU LEU A . n A 1 82 ARG 82 578 578 ARG ARG A . n A 1 83 ARG 83 579 579 ARG ARG A . n A 1 84 ILE 84 580 580 ILE ILE A . n A 1 85 ALA 85 581 581 ALA ALA A . n A 1 86 SER 86 582 582 SER SER A . n A 1 87 GLN 87 583 583 GLN GLN A . n A 1 88 VAL 88 584 584 VAL VAL A . n A 1 89 LYS 89 585 585 LYS LYS A . n A 1 90 TYR 90 586 586 TYR TYR A . n A 1 91 ALA 91 587 587 ALA ALA A . n A 1 92 GLY 92 588 588 GLY GLY A . n A 1 93 SER 93 589 589 SER SER A . n A 1 94 GLN 94 590 590 GLN GLN A . n A 1 95 VAL 95 591 591 VAL VAL A . n A 1 96 ALA 96 592 592 ALA ALA A . n A 1 97 SER 97 593 593 SER SER A . n A 1 98 THR 98 594 594 THR THR A . n A 1 99 SER 99 595 595 SER SER A . n A 1 100 GLU 100 596 596 GLU GLU A . n A 1 101 VAL 101 597 597 VAL VAL A . n A 1 102 LEU 102 598 598 LEU LEU A . n A 1 103 LYS 103 599 599 LYS LYS A . n A 1 104 TYR 104 600 600 TYR TYR A . n A 1 105 THR 105 601 601 THR THR A . n A 1 106 LEU 106 602 602 LEU LEU A . n A 1 107 PHE 107 603 603 PHE PHE A . n A 1 108 GLN 108 604 604 GLN GLN A . n A 1 109 ILE 109 605 605 ILE ILE A . n A 1 110 PHE 110 606 606 PHE PHE A . n A 1 111 SER 111 607 607 SER SER A . n A 1 112 LYS 112 608 608 LYS LYS A . n A 1 113 ILE 113 609 609 ILE ILE A . n A 1 114 ASP 114 610 610 ASP ASP A . n A 1 115 ARG 115 611 611 ARG ARG A . n A 1 116 PRO 116 612 612 PRO PRO A . n A 1 117 GLU 117 613 613 GLU GLU A . n A 1 118 ALA 118 614 614 ALA ALA A . n A 1 119 SER 119 615 615 SER SER A . n A 1 120 ARG 120 616 616 ARG ARG A . n A 1 121 ILE 121 617 617 ILE ILE A . n A 1 122 ALA 122 618 618 ALA ALA A . n A 1 123 LEU 123 619 619 LEU LEU A . n A 1 124 LEU 124 620 620 LEU LEU A . n A 1 125 LEU 125 621 621 LEU LEU A . n A 1 126 MET 126 622 622 MET MET A . n A 1 127 ALA 127 623 623 ALA ALA A . n A 1 128 SER 128 624 624 SER SER A . n A 1 129 GLN 129 625 625 GLN GLN A . n A 1 130 GLU 130 626 626 GLU GLU A . n A 1 131 PRO 131 627 627 PRO PRO A . n A 1 132 GLN 132 628 628 GLN GLN A . n A 1 133 ARG 133 629 629 ARG ARG A . n A 1 134 MET 134 630 630 MET MET A . n A 1 135 SER 135 631 631 SER SER A . n A 1 136 ARG 136 632 632 ARG ARG A . n A 1 137 ASN 137 633 633 ASN ASN A . n A 1 138 PHE 138 634 634 PHE PHE A . n A 1 139 VAL 139 635 635 VAL VAL A . n A 1 140 ARG 140 636 636 ARG ARG A . n A 1 141 TYR 141 637 637 TYR TYR A . n A 1 142 VAL 142 638 638 VAL VAL A . n A 1 143 GLN 143 639 639 GLN GLN A . n A 1 144 GLY 144 640 640 GLY GLY A . n A 1 145 LEU 145 641 641 LEU LEU A . n A 1 146 LYS 146 642 642 LYS LYS A . n A 1 147 LYS 147 643 643 LYS LYS A . n A 1 148 LYS 148 644 644 LYS LYS A . n A 1 149 LYS 149 645 645 LYS LYS A . n A 1 150 VAL 150 646 646 VAL VAL A . n A 1 151 ILE 151 647 647 ILE ILE A . n A 1 152 VAL 152 648 648 VAL VAL A . n A 1 153 ILE 153 649 649 ILE ILE A . n A 1 154 PRO 154 650 650 PRO PRO A . n A 1 155 VAL 155 651 651 VAL VAL A . n A 1 156 GLY 156 652 652 GLY GLY A . n A 1 157 ILE 157 653 653 ILE ILE A . n A 1 158 GLY 158 654 654 GLY GLY A . n A 1 159 PRO 159 655 655 PRO PRO A . n A 1 160 HIS 160 656 656 HIS HIS A . n A 1 161 ALA 161 657 657 ALA ALA A . n A 1 162 ASN 162 658 658 ASN ASN A . n A 1 163 LEU 163 659 659 LEU LEU A . n A 1 164 LYS 164 660 660 LYS LYS A . n A 1 165 GLN 165 661 661 GLN GLN A . n A 1 166 ILE 166 662 662 ILE ILE A . n A 1 167 ARG 167 663 663 ARG ARG A . n A 1 168 LEU 168 664 664 LEU LEU A . n A 1 169 ILE 169 665 665 ILE ILE A . n A 1 170 GLU 170 666 666 GLU GLU A . n A 1 171 LYS 171 667 667 LYS LYS A . n A 1 172 GLN 172 668 668 GLN GLN A . n A 1 173 ALA 173 669 669 ALA ALA A . n A 1 174 PRO 174 670 670 PRO PRO A . n A 1 175 GLU 175 671 671 GLU GLU A . n A 1 176 ASN 176 672 672 ASN ASN A . n A 1 177 LYS 177 673 673 LYS LYS A . n A 1 178 ALA 178 674 674 ALA ALA A . n A 1 179 PHE 179 675 675 PHE PHE A . n A 1 180 VAL 180 676 676 VAL VAL A . n A 1 181 LEU 181 677 677 LEU LEU A . n A 1 182 SER 182 678 678 SER SER A . n A 1 183 SER 183 679 679 SER SER A . n A 1 184 VAL 184 680 680 VAL VAL A . n A 1 185 ASP 185 681 681 ASP ASP A . n A 1 186 GLU 186 682 682 GLU GLU A . n A 1 187 LEU 187 683 683 LEU LEU A . n A 1 188 GLU 188 684 684 GLU GLU A . n A 1 189 GLN 189 685 685 GLN GLN A . n A 1 190 GLN 190 686 686 GLN GLN A . n A 1 191 ARG 191 687 687 ARG ARG A . n A 1 192 ASP 192 688 688 ASP ASP A . n A 1 193 GLU 193 689 689 GLU GLU A . n A 1 194 ILE 194 690 690 ILE ILE A . n A 1 195 VAL 195 691 691 VAL VAL A . n A 1 196 SER 196 692 692 SER SER A . n A 1 197 TYR 197 693 693 TYR TYR A . n A 1 198 LEU 198 694 694 LEU LEU A . n A 1 199 CYS 199 695 695 CYS CYS A . n A 1 200 ASP 200 696 696 ASP ASP A . n A 1 201 LEU 201 697 697 LEU LEU A . n A 1 202 ALA 202 698 698 ALA ALA A . n A 1 203 PRO 203 699 699 PRO PRO A . n A 1 204 GLU 204 700 700 GLU GLU A . n A 1 205 ALA 205 701 701 ALA ALA A . n A 1 206 PRO 206 702 702 PRO PRO A . n A 1 207 PRO 207 703 ? ? ? A . n A 1 208 PRO 208 704 ? ? ? A . n A 1 209 THR 209 705 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DC 12 12 12 DC DC B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DT 14 14 14 DT DT B . n B 2 15 DT 15 15 15 DT DT B . n B 2 16 DC 16 16 16 DC DC B . n B 2 17 DG 17 17 17 DG DG B . n B 2 18 DG 18 18 18 DG DG B . n B 2 19 DC 19 19 19 DC DC B . n B 2 20 DC 20 20 20 DC DC B . n B 2 21 DG 21 21 21 DG DG B . n B 2 22 DT 22 22 22 DT DT B . n B 2 23 DG 23 23 23 DG DG B . n B 2 24 DC 24 24 24 DC DC B . n B 2 25 DG 25 25 25 DG DG B . n B 2 26 DG 26 26 26 DG DG B . n B 2 27 DT 27 27 27 DT DT B . n B 2 28 DG 28 28 28 DG DG B . n B 2 29 DC 29 29 29 DC DC B . n B 2 30 DC 30 30 30 DC DC B . n B 2 31 DT 31 31 31 DT DT B . n B 2 32 DC 32 32 32 DC DC B . n B 2 33 DC 33 33 33 DC DC B . n B 2 34 DG 34 34 34 DG DG B . n B 2 35 DT 35 35 35 DT DT B . n B 2 36 DC 36 36 36 DC DC B . n B 2 37 DA 37 37 37 DA DA B . n B 2 38 DC 38 38 38 DC DC B . n B 2 39 DG 39 39 39 DG DG B . n B 2 40 DC 40 40 40 DC DC B . n B 2 41 DC 41 41 41 DC DC B . n B 2 42 DT 42 42 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 7 7 HOH HOH A . C 3 HOH 5 9 9 HOH HOH A . C 3 HOH 6 10 10 HOH HOH A . C 3 HOH 7 11 11 HOH HOH A . C 3 HOH 8 17 17 HOH HOH A . C 3 HOH 9 21 21 HOH HOH A . C 3 HOH 10 22 22 HOH HOH A . C 3 HOH 11 24 24 HOH HOH A . C 3 HOH 12 25 25 HOH HOH A . C 3 HOH 13 33 33 HOH HOH A . C 3 HOH 14 36 36 HOH HOH A . C 3 HOH 15 40 40 HOH HOH A . C 3 HOH 16 41 41 HOH HOH A . C 3 HOH 17 45 45 HOH HOH A . C 3 HOH 18 48 48 HOH HOH A . C 3 HOH 19 49 49 HOH HOH A . C 3 HOH 20 52 52 HOH HOH A . C 3 HOH 21 53 53 HOH HOH A . C 3 HOH 22 56 56 HOH HOH A . C 3 HOH 23 57 57 HOH HOH A . C 3 HOH 24 58 58 HOH HOH A . C 3 HOH 25 64 64 HOH HOH A . C 3 HOH 26 65 65 HOH HOH A . C 3 HOH 27 66 66 HOH HOH A . C 3 HOH 28 69 69 HOH HOH A . C 3 HOH 29 70 70 HOH HOH A . C 3 HOH 30 81 81 HOH HOH A . C 3 HOH 31 83 83 HOH HOH A . C 3 HOH 32 88 88 HOH HOH A . C 3 HOH 33 89 89 HOH HOH A . C 3 HOH 34 90 90 HOH HOH A . C 3 HOH 35 104 104 HOH HOH A . C 3 HOH 36 105 105 HOH HOH A . C 3 HOH 37 106 106 HOH HOH A . C 3 HOH 38 107 107 HOH HOH A . C 3 HOH 39 120 120 HOH HOH A . C 3 HOH 40 121 121 HOH HOH A . C 3 HOH 41 122 122 HOH HOH A . C 3 HOH 42 126 126 HOH HOH A . C 3 HOH 43 132 132 HOH HOH A . C 3 HOH 44 135 135 HOH HOH A . C 3 HOH 45 143 143 HOH HOH A . C 3 HOH 46 148 148 HOH HOH A . C 3 HOH 47 152 152 HOH HOH A . C 3 HOH 48 154 154 HOH HOH A . C 3 HOH 49 158 158 HOH HOH A . C 3 HOH 50 159 159 HOH HOH A . C 3 HOH 51 164 164 HOH HOH A . C 3 HOH 52 166 166 HOH HOH A . C 3 HOH 53 167 167 HOH HOH A . D 3 HOH 1 43 43 HOH HOH B . D 3 HOH 2 44 44 HOH HOH B . D 3 HOH 3 45 45 HOH HOH B . D 3 HOH 4 46 46 HOH HOH B . D 3 HOH 5 47 47 HOH HOH B . D 3 HOH 6 48 48 HOH HOH B . D 3 HOH 7 49 49 HOH HOH B . D 3 HOH 8 50 50 HOH HOH B . D 3 HOH 9 51 51 HOH HOH B . D 3 HOH 10 52 52 HOH HOH B . D 3 HOH 11 53 53 HOH HOH B . D 3 HOH 12 54 54 HOH HOH B . D 3 HOH 13 56 56 HOH HOH B . D 3 HOH 14 57 57 HOH HOH B . D 3 HOH 15 59 59 HOH HOH B . D 3 HOH 16 60 60 HOH HOH B . D 3 HOH 17 62 62 HOH HOH B . D 3 HOH 18 63 63 HOH HOH B . D 3 HOH 19 65 65 HOH HOH B . D 3 HOH 20 66 66 HOH HOH B . D 3 HOH 21 68 68 HOH HOH B . D 3 HOH 22 69 69 HOH HOH B . D 3 HOH 23 71 71 HOH HOH B . D 3 HOH 24 75 75 HOH HOH B . D 3 HOH 25 76 76 HOH HOH B . D 3 HOH 26 78 78 HOH HOH B . D 3 HOH 27 79 79 HOH HOH B . D 3 HOH 28 80 80 HOH HOH B . D 3 HOH 29 84 84 HOH HOH B . D 3 HOH 30 86 86 HOH HOH B . D 3 HOH 31 87 87 HOH HOH B . D 3 HOH 32 93 93 HOH HOH B . D 3 HOH 33 94 94 HOH HOH B . D 3 HOH 34 100 100 HOH HOH B . D 3 HOH 35 115 115 HOH HOH B . D 3 HOH 36 117 117 HOH HOH B . D 3 HOH 37 127 127 HOH HOH B . D 3 HOH 38 128 128 HOH HOH B . D 3 HOH 39 131 131 HOH HOH B . D 3 HOH 40 136 136 HOH HOH B . D 3 HOH 41 137 137 HOH HOH B . D 3 HOH 42 138 138 HOH HOH B . D 3 HOH 43 145 145 HOH HOH B . D 3 HOH 44 151 151 HOH HOH B . D 3 HOH 45 156 156 HOH HOH B . D 3 HOH 46 157 157 HOH HOH B . D 3 HOH 47 160 160 HOH HOH B . D 3 HOH 48 161 161 HOH HOH B . D 3 HOH 49 165 165 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2110 ? 1 MORE -2 ? 1 'SSA (A^2)' 15330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 152 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-16 4 'Structure model' 1 3 2012-03-21 5 'Structure model' 1 4 2017-11-22 6 'Structure model' 1 5 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_database_related 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_pdbx_database_related.db_id' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 43.7633 -33.3841 11.8842 0.2358 0.2606 0.1301 0.1861 0.1163 0.1641 5.9018 5.2754 4.3206 -3.5271 1.3573 0.3187 0.5359 -0.6896 0.0007 0.6851 0.7053 -0.8395 -0.5113 0.2961 0.6248 'X-RAY DIFFRACTION' 2 ? refined 15.7255 -16.9845 16.6704 0.2832 0.5948 0.5655 0.2517 0.0036 -0.1765 1.6195 2.8935 4.9929 -0.6857 1.8432 -1.4326 -0.1891 0.0026 -0.0252 -0.2185 0.1262 0.8364 0.4617 0.0117 -1.3092 'X-RAY DIFFRACTION' 3 ? refined 30.1872 -26.7262 14.2476 0.2972 0.2226 0.0937 0.0096 -0.0186 0.1193 -0.0242 -0.0524 0.2451 -0.0084 0.0216 0.0315 0.0308 0.0383 -0.0000 0.1058 0.0273 0.0298 -0.0308 -0.0291 0.0567 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 'chain A and not (water)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 B 0 'chain B and not (water)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 ? 0 ? 0 water ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3HXQ _pdbx_entry_details.compound_details ;AUTHOR STATE THAT THE LAST RESIDUE OF THE DNA POLYMER IS AN INVERTED-DT WHICH IS NOT MODELED DUE TO DISORDER. 3' INVERTED DT IS LINKED TO THE PHOSPHATE GROUP OF ITS PREVIOUS RESIDUE BY THE THIRD CARBON ATOMS OF THE SUGAR RINGS. ; _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 110.31 108.30 2.01 0.30 N 2 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.37 108.30 2.07 0.30 N 3 1 "O4'" B DG 25 ? ? "C4'" B DG 25 ? ? "C3'" B DG 25 ? ? 101.61 104.50 -2.89 0.40 N 4 1 "O4'" B DG 34 ? ? "C1'" B DG 34 ? ? N9 B DG 34 ? ? 110.29 108.30 1.99 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 508 ? ? -154.98 87.66 2 1 CYS A 509 ? ? -55.88 103.75 3 1 SER A 510 ? ? -110.54 76.95 4 1 SER A 547 ? ? -173.60 144.89 5 1 TRP A 550 ? ? -147.77 -101.72 6 1 HIS A 559 ? ? -108.87 -145.39 7 1 LYS A 572 ? ? -91.96 -155.49 8 1 GLN A 583 ? ? -85.18 33.79 9 1 ARG A 611 ? ? -150.97 89.88 10 1 ALA A 623 ? ? -154.46 19.17 11 1 ASN A 658 ? ? -56.37 93.44 12 1 ASN A 672 ? ? -91.86 55.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 497 ? A GLU 1 2 1 Y 1 A ASP 498 ? A ASP 2 3 1 Y 1 A ILE 499 ? A ILE 3 4 1 Y 1 A SER 500 ? A SER 4 5 1 Y 1 A GLU 501 ? A GLU 5 6 1 Y 1 A PRO 703 ? A PRO 207 7 1 Y 1 A PRO 704 ? A PRO 208 8 1 Y 1 A THR 705 ? A THR 209 9 1 Y 1 B DT 42 ? B DT 42 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3HXQ 'double helix' 3HXQ 'b-form double helix' 3HXQ 'hairpin loop' 3HXQ 'bulge loop' 3HXQ 'mismatched base pair' 3HXQ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 B DC 41 1_555 -0.121 -0.288 -0.560 -0.188 1.239 -0.177 1 B_DG1:DC41_B B 1 ? B 41 ? 19 1 1 B DG 2 1_555 B DC 40 1_555 0.455 -0.167 0.330 2.112 -5.301 -4.222 2 B_DG2:DC40_B B 2 ? B 40 ? 19 1 1 B DC 3 1_555 B DG 39 1_555 0.915 -0.662 0.594 -4.222 -18.772 -7.645 3 B_DC3:DG39_B B 3 ? B 39 ? 19 1 1 B DG 4 1_555 B DC 38 1_555 0.732 0.158 0.647 7.394 -13.941 8.659 4 B_DG4:DC38_B B 4 ? B 38 ? ? 1 1 B DT 5 1_555 B DA 37 1_555 0.755 -0.364 0.627 0.519 -19.537 -10.450 5 B_DT5:DA37_B B 5 ? B 37 ? 20 1 1 B DG 6 1_555 B DC 36 1_555 0.312 -0.252 0.705 7.504 -4.729 -2.602 6 B_DG6:DC36_B B 6 ? B 36 ? 19 1 1 B DG 23 1_555 B DT 35 1_555 -1.642 -0.385 0.555 12.592 -16.889 -18.500 7 B_DG23:DT35_B B 23 ? B 35 ? 28 ? 1 B DC 24 1_555 B DG 34 1_555 -0.077 -0.019 0.532 -11.545 -9.118 -6.650 8 B_DC24:DG34_B B 24 ? B 34 ? 19 1 1 B DG 25 1_555 B DC 33 1_555 -0.228 -0.217 0.321 4.509 -11.366 -1.281 9 B_DG25:DC33_B B 25 ? B 33 ? 19 1 1 B DG 26 1_555 B DC 32 1_555 0.467 -0.309 0.814 9.862 -10.458 -1.159 10 B_DG26:DC32_B B 26 ? B 32 ? 19 1 1 B DA 8 1_555 B DG 21 1_555 -6.565 -4.357 0.874 -39.184 -1.441 7.087 11 B_DA8:DG21_B B 8 ? B 21 ? 11 9 1 B DG 9 1_555 B DC 20 1_555 -0.367 -0.052 -0.497 -10.049 2.418 0.160 12 B_DG9:DC20_B B 9 ? B 20 ? 19 1 1 B DG 11 1_555 B DC 19 1_555 0.135 -0.072 -1.127 -19.624 -4.760 -10.356 13 B_DG11:DC19_B B 11 ? B 19 ? 19 1 1 B DC 12 1_555 B DG 18 1_555 0.164 -0.274 -1.408 5.553 -7.506 -10.329 14 B_DC12:DG18_B B 12 ? B 18 ? ? ? 1 B DC 13 1_555 B DG 17 1_555 0.582 0.240 0.104 16.450 7.050 1.958 15 B_DC13:DG17_B B 13 ? B 17 ? 19 1 1 B DT 22 1_555 B DT 31 1_555 -2.562 2.091 1.859 34.969 43.257 -8.887 16 B_DT22:DT31_B B 22 ? B 31 ? ? ? 1 B DG 28 1_555 B DC 30 1_555 1.908 -3.244 -1.247 44.135 -8.917 -75.467 17 B_DG28:DC30_B B 28 ? B 30 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 B DC 41 1_555 B DG 2 1_555 B DC 40 1_555 -0.290 0.344 3.216 -7.675 0.578 39.075 0.439 -0.458 3.218 0.854 11.341 39.797 1 BB_DG1DG2:DC40DC41_BB B 1 ? B 41 ? B 2 ? B 40 ? 1 B DG 2 1_555 B DC 40 1_555 B DC 3 1_555 B DG 39 1_555 0.551 -0.935 3.498 -0.706 -0.535 35.342 -1.456 -1.019 3.500 -0.881 1.163 35.353 2 BB_DG2DC3:DG39DC40_BB B 2 ? B 40 ? B 3 ? B 39 ? 1 B DC 3 1_555 B DG 39 1_555 B DG 4 1_555 B DC 38 1_555 0.565 0.411 3.048 2.284 0.974 35.651 0.538 -0.611 3.087 1.589 -3.726 35.734 3 BB_DC3DG4:DC38DG39_BB B 3 ? B 39 ? B 4 ? B 38 ? 1 B DG 4 1_555 B DC 38 1_555 B DT 5 1_555 B DA 37 1_555 -1.248 -0.766 3.340 -2.884 -0.104 35.086 -1.251 1.618 3.430 -0.172 4.774 35.201 4 BB_DG4DT5:DA37DC38_BB B 4 ? B 38 ? B 5 ? B 37 ? 1 B DT 5 1_555 B DA 37 1_555 B DG 6 1_555 B DC 36 1_555 0.766 -0.485 3.017 0.858 -4.091 32.460 -0.202 -1.221 3.072 -7.280 -1.526 32.721 5 BB_DT5DG6:DC36DA37_BB B 5 ? B 37 ? B 6 ? B 36 ? 1 B DG 6 1_555 B DC 36 1_555 B DG 23 1_555 B DT 35 1_555 1.324 -1.679 3.000 0.467 10.387 10.942 -12.559 -4.765 1.067 43.616 -1.963 15.083 6 BB_DG6DG23:DT35DC36_BB B 6 ? B 36 ? B 23 ? B 35 ? 1 B DG 23 1_555 B DT 35 1_555 B DC 24 1_555 B DG 34 1_555 -0.202 -1.278 3.842 -0.034 -3.065 41.966 -1.404 0.277 3.922 -4.272 0.047 42.073 7 BB_DG23DC24:DG34DT35_BB B 23 ? B 35 ? B 24 ? B 34 ? 1 B DC 24 1_555 B DG 34 1_555 B DG 25 1_555 B DC 33 1_555 -0.907 0.115 3.075 4.953 2.501 34.151 -0.163 2.231 2.920 4.225 -8.366 34.585 8 BB_DC24DG25:DC33DG34_BB B 24 ? B 34 ? B 25 ? B 33 ? 1 B DG 25 1_555 B DC 33 1_555 B DG 26 1_555 B DC 32 1_555 0.945 0.215 3.103 -3.557 0.044 38.036 0.324 -1.864 3.006 0.067 5.443 38.195 9 BB_DG25DG26:DC32DC33_BB B 25 ? B 33 ? B 26 ? B 32 ? 1 B DA 8 1_555 B DG 21 1_555 B DG 9 1_555 B DC 20 1_555 -0.316 1.407 2.782 -0.043 11.413 52.831 0.918 0.346 3.004 12.660 0.048 53.963 10 BB_DA8DG9:DC20DG21_BB B 8 ? B 21 ? B 9 ? B 20 ? 1 B DG 9 1_555 B DC 20 1_555 B DG 11 1_555 B DC 19 1_555 0.172 -1.054 3.813 4.392 -0.432 29.324 -1.953 0.749 3.813 -0.847 -8.613 29.647 11 BB_DG9DG11:DC19DC20_BB B 9 ? B 20 ? B 11 ? B 19 ? 1 B DG 11 1_555 B DC 19 1_555 B DC 12 1_555 B DG 18 1_555 0.449 -1.022 2.776 7.121 -3.784 36.823 -1.152 0.115 2.897 -5.903 -11.109 37.666 12 BB_DG11DC12:DG18DC19_BB B 11 ? B 19 ? B 12 ? B 18 ? 1 B DC 12 1_555 B DG 18 1_555 B DC 13 1_555 B DG 17 1_555 0.881 -1.712 3.293 -8.105 21.547 32.035 -4.689 -2.116 1.613 34.096 12.825 39.272 13 BB_DC12DC13:DG17DG18_BB B 12 ? B 18 ? B 13 ? B 17 ? 1 B DT 22 1_555 B DT 31 1_555 B DG 28 1_555 B DC 30 1_555 5.070 -5.493 -0.572 -52.965 120.844 -140.285 2.691 2.524 1.671 -61.594 -26.996 -164.099 14 BB_DT22DG28:DC30DT31_BB B 22 ? B 31 ? B 28 ? B 30 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3HXO _pdbx_initial_refinement_model.details ? #