data_3I14 # _entry.id 3I14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3I14 RCSB RCSB053832 WWPDB D_1000053832 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1bvt . unspecified PDB 1bc2 . unspecified PDB 3I0V . unspecified PDB 3I11 . unspecified PDB 3I13 . unspecified PDB 3I15 . unspecified # _pdbx_database_status.entry_id 3I14 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-25 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gonzalez, J.M.' 1 'Buschiazzo, A.' 2 'Vila, A.J.' 3 # _citation.id primary _citation.title 'Evidence of adaptability in metal coordination geometry and active-site loop conformation among B1 metallo-beta-lactamases .' _citation.journal_abbrev Biochemistry _citation.journal_volume 49 _citation.page_first 7930 _citation.page_last 7938 _citation.year 2010 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20677753 _citation.pdbx_database_id_DOI 10.1021/bi100894r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gonzalez, J.M.' 1 primary 'Buschiazzo, A.' 2 primary 'Vila, A.J.' 3 # _cell.length_a 53.078 _cell.length_b 61.699 _cell.length_c 69.630 _cell.angle_alpha 90.000 _cell.angle_beta 93.090 _cell.angle_gamma 90.000 _cell.entry_id 3I14 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3I14 _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-lactamase 2' 25043.531 1 3.5.2.6 ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 253 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Beta-lactamase II, Penicillinase, Cephalosporinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVT DVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ YNILVGG(OCS)LVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK ; _entity_poly.pdbx_seq_one_letter_code_can ;SQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVT DVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ YNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLN n 1 3 LYS n 1 4 VAL n 1 5 GLU n 1 6 LYS n 1 7 THR n 1 8 VAL n 1 9 ILE n 1 10 LYS n 1 11 ASN n 1 12 GLU n 1 13 THR n 1 14 GLY n 1 15 THR n 1 16 ILE n 1 17 SER n 1 18 ILE n 1 19 SER n 1 20 GLN n 1 21 LEU n 1 22 ASN n 1 23 LYS n 1 24 ASN n 1 25 VAL n 1 26 TRP n 1 27 VAL n 1 28 HIS n 1 29 THR n 1 30 GLU n 1 31 LEU n 1 32 GLY n 1 33 SER n 1 34 PHE n 1 35 ASN n 1 36 GLY n 1 37 GLU n 1 38 ALA n 1 39 VAL n 1 40 PRO n 1 41 SER n 1 42 ASN n 1 43 GLY n 1 44 LEU n 1 45 VAL n 1 46 LEU n 1 47 ASN n 1 48 THR n 1 49 SER n 1 50 LYS n 1 51 GLY n 1 52 LEU n 1 53 VAL n 1 54 LEU n 1 55 VAL n 1 56 ASP n 1 57 SER n 1 58 SER n 1 59 TRP n 1 60 ASP n 1 61 ASP n 1 62 LYS n 1 63 LEU n 1 64 THR n 1 65 LYS n 1 66 GLU n 1 67 LEU n 1 68 ILE n 1 69 GLU n 1 70 MET n 1 71 VAL n 1 72 GLU n 1 73 LYS n 1 74 LYS n 1 75 PHE n 1 76 GLN n 1 77 LYS n 1 78 ARG n 1 79 VAL n 1 80 THR n 1 81 ASP n 1 82 VAL n 1 83 ILE n 1 84 ILE n 1 85 THR n 1 86 HIS n 1 87 ALA n 1 88 HIS n 1 89 ALA n 1 90 ASP n 1 91 ARG n 1 92 ILE n 1 93 GLY n 1 94 GLY n 1 95 ILE n 1 96 LYS n 1 97 THR n 1 98 LEU n 1 99 LYS n 1 100 GLU n 1 101 ARG n 1 102 GLY n 1 103 ILE n 1 104 LYS n 1 105 ALA n 1 106 HIS n 1 107 SER n 1 108 THR n 1 109 ALA n 1 110 LEU n 1 111 THR n 1 112 ALA n 1 113 GLU n 1 114 LEU n 1 115 ALA n 1 116 LYS n 1 117 LYS n 1 118 ASN n 1 119 GLY n 1 120 TYR n 1 121 GLU n 1 122 GLU n 1 123 PRO n 1 124 LEU n 1 125 GLY n 1 126 ASP n 1 127 LEU n 1 128 GLN n 1 129 THR n 1 130 VAL n 1 131 THR n 1 132 ASN n 1 133 LEU n 1 134 LYS n 1 135 PHE n 1 136 GLY n 1 137 ASN n 1 138 MET n 1 139 LYS n 1 140 VAL n 1 141 GLU n 1 142 THR n 1 143 PHE n 1 144 TYR n 1 145 PRO n 1 146 GLY n 1 147 LYS n 1 148 GLY n 1 149 HIS n 1 150 THR n 1 151 GLU n 1 152 ASP n 1 153 ASN n 1 154 ILE n 1 155 VAL n 1 156 VAL n 1 157 TRP n 1 158 LEU n 1 159 PRO n 1 160 GLN n 1 161 TYR n 1 162 ASN n 1 163 ILE n 1 164 LEU n 1 165 VAL n 1 166 GLY n 1 167 GLY n 1 168 OCS y 1 168 CYS y 1 169 LEU n 1 170 VAL n 1 171 LYS n 1 172 SER n 1 173 THR n 1 174 SER n 1 175 ALA n 1 176 LYS n 1 177 ASP n 1 178 LEU n 1 179 GLY n 1 180 ASN n 1 181 VAL n 1 182 ALA n 1 183 ASP n 1 184 ALA n 1 185 TYR n 1 186 VAL n 1 187 ASN n 1 188 GLU n 1 189 TRP n 1 190 SER n 1 191 THR n 1 192 SER n 1 193 ILE n 1 194 GLU n 1 195 ASN n 1 196 VAL n 1 197 LEU n 1 198 LYS n 1 199 ARG n 1 200 TYR n 1 201 ARG n 1 202 ASN n 1 203 ILE n 1 204 ASN n 1 205 ALA n 1 206 VAL n 1 207 VAL n 1 208 PRO n 1 209 GLY n 1 210 HIS n 1 211 GLY n 1 212 GLU n 1 213 VAL n 1 214 GLY n 1 215 ASP n 1 216 LYS n 1 217 GLY n 1 218 LEU n 1 219 LEU n 1 220 LEU n 1 221 HIS n 1 222 THR n 1 223 LEU n 1 224 ASP n 1 225 LEU n 1 226 LEU n 1 227 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 569/H/9 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLA2_BACCE _struct_ref.pdbx_db_accession P04190 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVT DVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ YNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I14 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 227 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04190 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 257 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 227 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3I14 _struct_ref_seq_dif.mon_id OCS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 168 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P04190 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 198 _struct_ref_seq_dif.details MICROHETEROGENEITY _struct_ref_seq_dif.pdbx_auth_seq_num 168 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3I14 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350, 1 mM CoSO4, 1 mM DTT, pH 5.8, Vapor diffusion, hanging drop, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2007-08-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'multilayer mirrors (Varimax-HF)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3I14 _reflns.d_resolution_high 1.553 _reflns.d_resolution_low 40.226 _reflns.number_all ? _reflns.number_obs 31080 _reflns.pdbx_Rmerge_I_obs 0.028 _reflns.pdbx_netI_over_sigmaI 15.408 _reflns.pdbx_Rsym_value 0.028 _reflns.pdbx_redundancy 6.000 _reflns.percent_possible_obs 95.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.55 1.63 ? 21711 ? 0.156 4.5 0.156 ? 5.30 ? 4122 87.20 1 1 1.63 1.73 ? 22728 ? 0.108 6.2 0.108 ? 5.40 ? 4189 94.10 2 1 1.73 1.85 ? 22090 ? 0.073 9.1 0.073 ? 5.50 ? 4036 95.00 3 1 1.85 2.00 ? 20549 ? 0.045 13.5 0.045 ? 5.50 ? 3746 96.10 4 1 2.00 2.19 ? 19332 ? 0.029 23.3 0.029 ? 5.50 ? 3505 96.90 5 1 2.19 2.45 ? 17686 ? 0.025 26.0 0.025 ? 5.50 ? 3197 97.60 6 1 2.45 2.83 ? 24041 ? 0.047 11.5 0.047 ? 8.40 ? 2855 98.60 7 1 2.83 3.47 ? 19832 ? 0.035 17.1 0.035 ? 8.10 ? 2444 99.60 8 1 3.47 4.90 ? 11913 ? 0.015 39.7 0.015 ? 6.20 ? 1909 99.90 9 1 4.90 40.23 ? 6591 ? 0.014 39.9 0.014 ? 6.10 ? 1077 99.80 10 1 # _refine.entry_id 3I14 _refine.ls_d_res_high 1.550 _refine.ls_d_res_low 35.44 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.850 _refine.ls_number_reflns_obs 31080 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_R_work 0.157 _refine.ls_wR_factor_R_work 0.163 _refine.ls_R_factor_R_free 0.191 _refine.ls_wR_factor_R_free 0.196 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1569 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.118 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.130 _refine.aniso_B[2][2] 0.860 _refine.aniso_B[3][3] -0.800 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.630 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.overall_SU_R_Cruickshank_DPI 0.077 _refine.overall_SU_R_free 0.080 _refine.pdbx_overall_ESU_R 0.077 _refine.pdbx_overall_ESU_R_Free 0.080 _refine.overall_SU_ML 0.045 _refine.overall_SU_B 2.643 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.902 _refine.B_iso_max 53.81 _refine.B_iso_min 3.50 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1661 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 1922 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 35.44 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1783 0.021 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1160 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2434 1.950 1.964 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2887 1.088 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 236 6.849 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 73 40.993 25.890 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 325 12.590 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 15.309 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 288 0.123 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1990 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 315 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1127 1.175 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 466 0.364 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1829 1.904 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 656 2.760 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 601 4.303 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 5 3.094 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 2 15.019 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 5 6.788 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.553 _refine_ls_shell.d_res_low 1.593 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.650 _refine_ls_shell.number_reflns_R_work 1988 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.177 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2104 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3I14 _struct.title 'Cobalt-substituted metallo-beta-lactamase from Bacillus cereus: residue Cys168 partially oxidized' _struct.pdbx_descriptor 'Beta-lactamase 2 (E.C.3.5.2.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I14 _struct_keywords.text 'Antibiotic resistance, Metallo-beta-lactamase superfamily, Zn-dependent hydrolase, Hydrolase, Metal-binding' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 60 ? GLN A 76 ? ASP A 60 GLN A 76 1 ? 17 HELX_P HELX_P2 2 HIS A 88 ? GLY A 93 ? HIS A 88 GLY A 93 1 ? 6 HELX_P HELX_P3 3 GLY A 94 ? GLY A 102 ? GLY A 94 GLY A 102 1 ? 9 HELX_P HELX_P4 4 THR A 108 ? ASN A 118 ? THR A 108 ASN A 118 1 ? 11 HELX_P HELX_P5 5 OCS A 168 ? VAL A 170 ? OCS A 168 VAL A 170 5 ? 3 HELX_P HELX_P6 6 GLU A 188 ? TYR A 200 ? GLU A 188 TYR A 200 1 ? 13 HELX_P HELX_P7 7 LYS A 216 ? LEU A 226 ? LYS A 216 LEU A 226 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 167 C B ? ? 1_555 A OCS 168 N B ? A GLY 167 A OCS 168 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A OCS 168 C B ? ? 1_555 A LEU 169 N ? ? A OCS 168 A LEU 169 1_555 ? ? ? ? ? ? ? 1.325 ? metalc1 metalc ? ? A HIS 86 NE2 ? ? ? 1_555 B CO . CO ? ? A HIS 86 A CO 228 1_555 ? ? ? ? ? ? ? 2.091 ? metalc2 metalc ? ? A HIS 88 ND1 ? ? ? 1_555 B CO . CO ? ? A HIS 88 A CO 228 1_555 ? ? ? ? ? ? ? 2.089 ? metalc3 metalc ? ? A ASP 90 OD2 A ? ? 1_555 C CO . CO ? ? A ASP 90 A CO 229 1_555 ? ? ? ? ? ? ? 2.201 ? metalc4 metalc ? ? A HIS 149 NE2 ? ? ? 1_555 B CO . CO ? ? A HIS 149 A CO 228 1_555 ? ? ? ? ? ? ? 2.090 ? metalc5 metalc ? ? A OCS 168 OD1 B ? ? 1_555 B CO . CO ? ? A OCS 168 A CO 228 1_555 ? ? ? ? ? ? ? 2.545 ? metalc6 metalc ? ? A HIS 210 NE2 ? ? ? 1_555 C CO . CO ? ? A HIS 210 A CO 229 1_555 ? ? ? ? ? ? ? 2.325 ? metalc7 metalc ? ? B CO . CO ? ? ? 1_555 E HOH . O A ? A CO 228 A HOH 405 1_555 ? ? ? ? ? ? ? 2.200 ? metalc8 metalc ? ? B CO . CO ? ? ? 1_555 E HOH . O B ? A CO 228 A HOH 405 1_555 ? ? ? ? ? ? ? 1.890 ? metalc9 metalc ? ? B CO . CO ? ? ? 1_555 E HOH . O ? ? A CO 228 A HOH 333 1_555 ? ? ? ? ? ? ? 2.398 ? metalc10 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O B ? A CO 229 A HOH 405 1_555 ? ? ? ? ? ? ? 2.247 ? metalc11 metalc ? ? C CO . CO ? ? ? 1_555 D GOL . O2 ? ? A CO 229 A GOL 230 1_555 ? ? ? ? ? ? ? 2.281 ? metalc12 metalc ? ? C CO . CO ? ? ? 1_555 D GOL . O3 ? ? A CO 229 A GOL 230 1_555 ? ? ? ? ? ? ? 2.294 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 8 ? LYS A 10 ? VAL A 8 LYS A 10 A 2 ILE A 16 ? GLN A 20 ? ILE A 16 GLN A 20 A 3 VAL A 25 ? GLU A 30 ? VAL A 25 GLU A 30 A 4 SER A 41 ? THR A 48 ? SER A 41 THR A 48 A 5 GLY A 51 ? VAL A 55 ? GLY A 51 VAL A 55 A 6 VAL A 79 ? ILE A 83 ? VAL A 79 ILE A 83 A 7 LYS A 104 ? HIS A 106 ? LYS A 104 HIS A 106 B 1 VAL A 130 ? PHE A 135 ? VAL A 130 PHE A 135 B 2 MET A 138 ? PHE A 143 ? MET A 138 PHE A 143 B 3 VAL A 155 ? TRP A 157 ? VAL A 155 TRP A 157 B 4 ILE A 163 ? GLY A 167 ? ILE A 163 GLY A 167 B 5 ALA A 205 ? PRO A 208 ? ALA A 205 PRO A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE A 9 O ILE A 18 ? O ILE A 18 A 2 3 N SER A 19 ? N SER A 19 O VAL A 27 ? O VAL A 27 A 3 4 N TRP A 26 ? N TRP A 26 O VAL A 45 ? O VAL A 45 A 4 5 N LEU A 46 ? N LEU A 46 O VAL A 53 ? O VAL A 53 A 5 6 N LEU A 52 ? N LEU A 52 O THR A 80 ? O THR A 80 A 6 7 N VAL A 82 ? N VAL A 82 O HIS A 106 ? O HIS A 106 B 1 2 N LEU A 133 ? N LEU A 133 O VAL A 140 ? O VAL A 140 B 2 3 N GLU A 141 ? N GLU A 141 O TRP A 157 ? O TRP A 157 B 3 4 N VAL A 156 ? N VAL A 156 O VAL A 165 ? O VAL A 165 B 4 5 N LEU A 164 ? N LEU A 164 O VAL A 207 ? O VAL A 207 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CO A 228' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CO A 229' AC3 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE GOL A 230' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 86 ? HIS A 86 . ? 1_555 ? 2 AC1 6 HIS A 88 ? HIS A 88 . ? 1_555 ? 3 AC1 6 HIS A 149 ? HIS A 149 . ? 1_555 ? 4 AC1 6 OCS A 168 ? OCS A 168 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 333 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 405 . ? 1_555 ? 7 AC2 5 ASP A 90 ? ASP A 90 . ? 1_555 ? 8 AC2 5 OCS A 168 ? OCS A 168 . ? 1_555 ? 9 AC2 5 HIS A 210 ? HIS A 210 . ? 1_555 ? 10 AC2 5 GOL D . ? GOL A 230 . ? 1_555 ? 11 AC2 5 HOH E . ? HOH A 405 . ? 1_555 ? 12 AC3 11 ASP A 90 ? ASP A 90 . ? 1_555 ? 13 AC3 11 HIS A 149 ? HIS A 149 . ? 1_555 ? 14 AC3 11 OCS A 168 ? OCS A 168 . ? 1_555 ? 15 AC3 11 LYS A 171 ? LYS A 171 . ? 1_555 ? 16 AC3 11 GLY A 179 ? GLY A 179 . ? 1_555 ? 17 AC3 11 ASN A 180 ? ASN A 180 . ? 1_555 ? 18 AC3 11 HIS A 210 ? HIS A 210 . ? 1_555 ? 19 AC3 11 CO C . ? CO A 229 . ? 1_555 ? 20 AC3 11 HOH E . ? HOH A 333 . ? 1_555 ? 21 AC3 11 HOH E . ? HOH A 353 . ? 1_555 ? 22 AC3 11 HOH E . ? HOH A 405 . ? 1_555 ? # _atom_sites.entry_id 3I14 _atom_sites.fract_transf_matrix[1][1] 0.018840 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001016 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016208 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014382 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 VAL 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 ? ? ? A . n A 1 33 SER 33 33 ? ? ? A . n A 1 34 PHE 34 34 ? ? ? A . n A 1 35 ASN 35 35 ? ? ? A . n A 1 36 GLY 36 36 ? ? ? A . n A 1 37 GLU 37 37 ? ? ? A . n A 1 38 ALA 38 38 ? ? ? A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 TRP 157 157 157 TRP TRP A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 GLN 160 160 160 GLN GLN A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 OCS 168 168 168 OCS OCS A . y A 1 168 CYS 168 168 168 CYS CYS A . y A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 TRP 189 189 189 TRP TRP A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 TYR 200 200 200 TYR TYR A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 HIS 210 210 210 HIS HIS A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 HIS 221 221 221 HIS HIS A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 LYS 227 227 227 LYS LYS A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCS _pdbx_struct_mod_residue.label_seq_id 168 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCS _pdbx_struct_mod_residue.auth_seq_id 168 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 95.6 ? 2 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 98.8 ? 3 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 103.6 ? 4 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 OD1 B A OCS 168 ? A OCS 168 ? 1_555 90.5 ? 5 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 OD1 B A OCS 168 ? A OCS 168 ? 1_555 169.1 ? 6 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 OD1 B A OCS 168 ? A OCS 168 ? 1_555 84.3 ? 7 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O A E HOH . ? A HOH 405 ? 1_555 94.8 ? 8 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O A E HOH . ? A HOH 405 ? 1_555 101.0 ? 9 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O A E HOH . ? A HOH 405 ? 1_555 150.4 ? 10 OD1 B A OCS 168 ? A OCS 168 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O A E HOH . ? A HOH 405 ? 1_555 69.3 ? 11 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 124.3 ? 12 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 122.1 ? 13 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 108.6 ? 14 OD1 B A OCS 168 ? A OCS 168 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 47.3 ? 15 O A E HOH . ? A HOH 405 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 43.1 ? 16 NE2 ? A HIS 86 ? A HIS 86 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 173.1 ? 17 ND1 ? A HIS 88 ? A HIS 88 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 83.5 ? 18 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 88.1 ? 19 OD1 B A OCS 168 ? A OCS 168 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 89.3 ? 20 O A E HOH . ? A HOH 405 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 78.7 ? 21 O B E HOH . ? A HOH 405 ? 1_555 CO ? B CO . ? A CO 228 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 51.7 ? 22 OD2 A A ASP 90 ? A ASP 90 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 NE2 ? A HIS 210 ? A HIS 210 ? 1_555 86.3 ? 23 OD2 A A ASP 90 ? A ASP 90 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 86.4 ? 24 NE2 ? A HIS 210 ? A HIS 210 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O B E HOH . ? A HOH 405 ? 1_555 149.8 ? 25 OD2 A A ASP 90 ? A ASP 90 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O2 ? D GOL . ? A GOL 230 ? 1_555 167.5 ? 26 NE2 ? A HIS 210 ? A HIS 210 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O2 ? D GOL . ? A GOL 230 ? 1_555 92.6 ? 27 O B E HOH . ? A HOH 405 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O2 ? D GOL . ? A GOL 230 ? 1_555 88.4 ? 28 OD2 A A ASP 90 ? A ASP 90 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O3 ? D GOL . ? A GOL 230 ? 1_555 87.5 ? 29 NE2 ? A HIS 210 ? A HIS 210 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O3 ? D GOL . ? A GOL 230 ? 1_555 86.4 ? 30 O B E HOH . ? A HOH 405 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O3 ? D GOL . ? A GOL 230 ? 1_555 64.0 ? 31 O2 ? D GOL . ? A GOL 230 ? 1_555 CO ? C CO . ? A CO 229 ? 1_555 O3 ? D GOL . ? A GOL 230 ? 1_555 80.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-29 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.7336 _pdbx_refine_tls.origin_y -0.9440 _pdbx_refine_tls.origin_z 18.0754 _pdbx_refine_tls.T[1][1] 0.0195 _pdbx_refine_tls.T[2][2] 0.0272 _pdbx_refine_tls.T[3][3] 0.0546 _pdbx_refine_tls.T[1][2] -0.0049 _pdbx_refine_tls.T[1][3] 0.0134 _pdbx_refine_tls.T[2][3] 0.0017 _pdbx_refine_tls.L[1][1] 1.0518 _pdbx_refine_tls.L[2][2] 0.6162 _pdbx_refine_tls.L[3][3] 2.9843 _pdbx_refine_tls.L[1][2] -0.2569 _pdbx_refine_tls.L[1][3] 0.9445 _pdbx_refine_tls.L[2][3] -0.0722 _pdbx_refine_tls.S[1][1] -0.0472 _pdbx_refine_tls.S[2][2] -0.0480 _pdbx_refine_tls.S[3][3] 0.0952 _pdbx_refine_tls.S[1][2] 0.1229 _pdbx_refine_tls.S[1][3] 0.0083 _pdbx_refine_tls.S[2][3] -0.0379 _pdbx_refine_tls.S[2][1] -0.0148 _pdbx_refine_tls.S[3][1] -0.0512 _pdbx_refine_tls.S[3][2] 0.2555 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 7 ? 1 1 A A 11 . . . . ? 'X-RAY DIFFRACTION' 15 ? 2 1 A A 31 . . . . ? 'X-RAY DIFFRACTION' 39 ? 3 1 A A 227 . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 AMoRE . ? program 'Jorge Navaza' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/ Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 151 ? B O A HOH 478 ? ? 1.56 2 1 O A ASP 90 ? A O A HOH 393 ? ? 1.85 3 1 O A HOH 371 ? ? O A HOH 424 ? ? 1.98 4 1 O A ASN 187 ? B O A HOH 471 ? ? 2.00 5 1 O A HOH 365 ? ? O A HOH 403 ? ? 2.00 6 1 OE1 A GLU 188 ? A O A HOH 233 ? ? 2.04 7 1 O A HOH 371 ? ? O A HOH 390 ? ? 2.04 8 1 CB A ASP 90 ? A O A HOH 391 ? ? 2.05 9 1 OE1 A GLU 188 ? A O A HOH 440 ? ? 2.14 10 1 OE2 A GLU 188 ? A O A HOH 440 ? ? 2.14 11 1 O A ASN 187 ? A O A HOH 468 ? ? 2.16 12 1 OD2 A OCS 168 ? B O2 A GOL 230 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 ND2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 187 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 336 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 1.62 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASN _pdbx_validate_rmsd_angle.auth_seq_id_1 22 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASN _pdbx_validate_rmsd_angle.auth_seq_id_2 22 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CB _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASN _pdbx_validate_rmsd_angle.auth_seq_id_3 22 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.94 _pdbx_validate_rmsd_angle.angle_target_value 110.60 _pdbx_validate_rmsd_angle.angle_deviation -12.66 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 56 ? ? 66.62 147.05 2 1 SER A 57 ? ? -101.37 -134.89 3 1 GLN A 128 ? ? -99.24 -159.74 4 1 ASP A 215 ? ? -137.57 -159.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 6 ? CG ? A LYS 6 CG 2 1 Y 1 A LYS 6 ? CD ? A LYS 6 CD 3 1 Y 1 A LYS 6 ? CE ? A LYS 6 CE 4 1 Y 1 A LYS 6 ? NZ ? A LYS 6 NZ 5 1 Y 1 A LYS 10 ? CG ? A LYS 10 CG 6 1 Y 1 A LYS 10 ? CD ? A LYS 10 CD 7 1 Y 1 A LYS 10 ? CE ? A LYS 10 CE 8 1 Y 1 A LYS 10 ? NZ ? A LYS 10 NZ 9 1 Y 1 A GLU 12 ? CG ? A GLU 12 CG 10 1 Y 1 A GLU 12 ? CD ? A GLU 12 CD 11 1 Y 1 A GLU 12 ? OE1 ? A GLU 12 OE1 12 1 Y 1 A GLU 12 ? OE2 ? A GLU 12 OE2 13 1 Y 1 A THR 13 ? OG1 ? A THR 13 OG1 14 1 Y 1 A THR 13 ? CG2 ? A THR 13 CG2 15 1 Y 1 A VAL 39 ? CG1 ? A VAL 39 CG1 16 1 Y 1 A VAL 39 ? CG2 ? A VAL 39 CG2 17 1 Y 1 A LYS 62 ? CG ? A LYS 62 CG 18 1 Y 1 A LYS 62 ? CD ? A LYS 62 CD 19 1 Y 1 A LYS 62 ? CE ? A LYS 62 CE 20 1 Y 1 A LYS 62 ? NZ ? A LYS 62 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A VAL 4 ? A VAL 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A GLY 32 ? A GLY 32 7 1 Y 1 A SER 33 ? A SER 33 8 1 Y 1 A PHE 34 ? A PHE 34 9 1 Y 1 A ASN 35 ? A ASN 35 10 1 Y 1 A GLY 36 ? A GLY 36 11 1 Y 1 A GLU 37 ? A GLU 37 12 1 Y 1 A ALA 38 ? A ALA 38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO 1 228 1 CO CO A . C 2 CO 1 229 2 CO CO A . D 3 GOL 1 230 1 GOL GOL A . E 4 HOH 1 231 231 HOH HOH A . E 4 HOH 2 232 232 HOH HOH A . E 4 HOH 3 233 233 HOH HOH A . E 4 HOH 4 234 1 HOH HOH A . E 4 HOH 5 235 235 HOH HOH A . E 4 HOH 6 236 236 HOH HOH A . E 4 HOH 7 237 2 HOH HOH A . E 4 HOH 8 238 3 HOH HOH A . E 4 HOH 9 239 4 HOH HOH A . E 4 HOH 10 240 5 HOH HOH A . E 4 HOH 11 241 6 HOH HOH A . E 4 HOH 12 242 7 HOH HOH A . E 4 HOH 13 243 8 HOH HOH A . E 4 HOH 14 244 244 HOH HOH A . E 4 HOH 15 245 9 HOH HOH A . E 4 HOH 16 246 10 HOH HOH A . E 4 HOH 17 247 11 HOH HOH A . E 4 HOH 18 248 248 HOH HOH A . E 4 HOH 19 249 249 HOH HOH A . E 4 HOH 20 250 250 HOH HOH A . E 4 HOH 21 251 251 HOH HOH A . E 4 HOH 22 252 252 HOH HOH A . E 4 HOH 23 253 253 HOH HOH A . E 4 HOH 24 254 254 HOH HOH A . E 4 HOH 25 255 255 HOH HOH A . E 4 HOH 26 256 12 HOH HOH A . E 4 HOH 27 257 257 HOH HOH A . E 4 HOH 28 258 13 HOH HOH A . E 4 HOH 29 259 14 HOH HOH A . E 4 HOH 30 260 260 HOH HOH A . E 4 HOH 31 261 261 HOH HOH A . E 4 HOH 32 262 262 HOH HOH A . E 4 HOH 33 263 263 HOH HOH A . E 4 HOH 34 264 264 HOH HOH A . E 4 HOH 35 265 15 HOH HOH A . E 4 HOH 36 266 266 HOH HOH A . E 4 HOH 37 267 267 HOH HOH A . E 4 HOH 38 268 268 HOH HOH A . E 4 HOH 39 269 269 HOH HOH A . E 4 HOH 40 270 270 HOH HOH A . E 4 HOH 41 271 271 HOH HOH A . E 4 HOH 42 272 272 HOH HOH A . E 4 HOH 43 273 273 HOH HOH A . E 4 HOH 44 274 274 HOH HOH A . E 4 HOH 45 275 275 HOH HOH A . E 4 HOH 46 276 276 HOH HOH A . E 4 HOH 47 277 277 HOH HOH A . E 4 HOH 48 278 278 HOH HOH A . E 4 HOH 49 279 279 HOH HOH A . E 4 HOH 50 280 280 HOH HOH A . E 4 HOH 51 281 281 HOH HOH A . E 4 HOH 52 282 282 HOH HOH A . E 4 HOH 53 283 283 HOH HOH A . E 4 HOH 54 284 284 HOH HOH A . E 4 HOH 55 285 285 HOH HOH A . E 4 HOH 56 286 286 HOH HOH A . E 4 HOH 57 287 16 HOH HOH A . E 4 HOH 58 288 288 HOH HOH A . E 4 HOH 59 289 289 HOH HOH A . E 4 HOH 60 290 290 HOH HOH A . E 4 HOH 61 291 291 HOH HOH A . E 4 HOH 62 292 292 HOH HOH A . E 4 HOH 63 293 17 HOH HOH A . E 4 HOH 64 294 18 HOH HOH A . E 4 HOH 65 295 19 HOH HOH A . E 4 HOH 66 296 20 HOH HOH A . E 4 HOH 67 297 21 HOH HOH A . E 4 HOH 68 298 22 HOH HOH A . E 4 HOH 69 299 23 HOH HOH A . E 4 HOH 70 300 24 HOH HOH A . E 4 HOH 71 301 25 HOH HOH A . E 4 HOH 72 302 26 HOH HOH A . E 4 HOH 73 303 27 HOH HOH A . E 4 HOH 74 304 28 HOH HOH A . E 4 HOH 75 305 29 HOH HOH A . E 4 HOH 76 306 30 HOH HOH A . E 4 HOH 77 307 31 HOH HOH A . E 4 HOH 78 308 32 HOH HOH A . E 4 HOH 79 309 33 HOH HOH A . E 4 HOH 80 310 34 HOH HOH A . E 4 HOH 81 311 35 HOH HOH A . E 4 HOH 82 312 36 HOH HOH A . E 4 HOH 83 313 37 HOH HOH A . E 4 HOH 84 314 38 HOH HOH A . E 4 HOH 85 315 39 HOH HOH A . E 4 HOH 86 316 40 HOH HOH A . E 4 HOH 87 317 41 HOH HOH A . E 4 HOH 88 318 42 HOH HOH A . E 4 HOH 89 319 43 HOH HOH A . E 4 HOH 90 320 44 HOH HOH A . E 4 HOH 91 321 45 HOH HOH A . E 4 HOH 92 322 46 HOH HOH A . E 4 HOH 93 323 47 HOH HOH A . E 4 HOH 94 324 48 HOH HOH A . E 4 HOH 95 325 49 HOH HOH A . E 4 HOH 96 326 50 HOH HOH A . E 4 HOH 97 327 51 HOH HOH A . E 4 HOH 98 328 52 HOH HOH A . E 4 HOH 99 329 53 HOH HOH A . E 4 HOH 100 330 54 HOH HOH A . E 4 HOH 101 331 55 HOH HOH A . E 4 HOH 102 332 56 HOH HOH A . E 4 HOH 103 333 57 HOH HOH A . E 4 HOH 104 334 58 HOH HOH A . E 4 HOH 105 335 59 HOH HOH A . E 4 HOH 106 336 60 HOH HOH A . E 4 HOH 107 337 61 HOH HOH A . E 4 HOH 108 338 62 HOH HOH A . E 4 HOH 109 339 63 HOH HOH A . E 4 HOH 110 340 64 HOH HOH A . E 4 HOH 111 341 65 HOH HOH A . E 4 HOH 112 342 66 HOH HOH A . E 4 HOH 113 343 67 HOH HOH A . E 4 HOH 114 344 68 HOH HOH A . E 4 HOH 115 345 70 HOH HOH A . E 4 HOH 116 346 71 HOH HOH A . E 4 HOH 117 347 72 HOH HOH A . E 4 HOH 118 348 73 HOH HOH A . E 4 HOH 119 349 74 HOH HOH A . E 4 HOH 120 350 75 HOH HOH A . E 4 HOH 121 351 76 HOH HOH A . E 4 HOH 122 352 77 HOH HOH A . E 4 HOH 123 353 79 HOH HOH A . E 4 HOH 124 354 80 HOH HOH A . E 4 HOH 125 355 81 HOH HOH A . E 4 HOH 126 356 82 HOH HOH A . E 4 HOH 127 357 83 HOH HOH A . E 4 HOH 128 358 84 HOH HOH A . E 4 HOH 129 359 85 HOH HOH A . E 4 HOH 130 360 86 HOH HOH A . E 4 HOH 131 361 87 HOH HOH A . E 4 HOH 132 362 88 HOH HOH A . E 4 HOH 133 363 89 HOH HOH A . E 4 HOH 134 364 90 HOH HOH A . E 4 HOH 135 365 91 HOH HOH A . E 4 HOH 136 366 92 HOH HOH A . E 4 HOH 137 367 93 HOH HOH A . E 4 HOH 138 368 94 HOH HOH A . E 4 HOH 139 369 95 HOH HOH A . E 4 HOH 140 370 96 HOH HOH A . E 4 HOH 141 371 97 HOH HOH A . E 4 HOH 142 372 98 HOH HOH A . E 4 HOH 143 373 99 HOH HOH A . E 4 HOH 144 374 100 HOH HOH A . E 4 HOH 145 375 101 HOH HOH A . E 4 HOH 146 376 102 HOH HOH A . E 4 HOH 147 377 103 HOH HOH A . E 4 HOH 148 378 104 HOH HOH A . E 4 HOH 149 379 105 HOH HOH A . E 4 HOH 150 380 106 HOH HOH A . E 4 HOH 151 381 108 HOH HOH A . E 4 HOH 152 382 109 HOH HOH A . E 4 HOH 153 383 110 HOH HOH A . E 4 HOH 154 384 111 HOH HOH A . E 4 HOH 155 385 112 HOH HOH A . E 4 HOH 156 386 113 HOH HOH A . E 4 HOH 157 387 114 HOH HOH A . E 4 HOH 158 388 115 HOH HOH A . E 4 HOH 159 389 116 HOH HOH A . E 4 HOH 160 390 117 HOH HOH A . E 4 HOH 161 391 118 HOH HOH A . E 4 HOH 162 392 119 HOH HOH A . E 4 HOH 163 393 120 HOH HOH A . E 4 HOH 164 394 121 HOH HOH A . E 4 HOH 165 395 122 HOH HOH A . E 4 HOH 166 396 123 HOH HOH A . E 4 HOH 167 397 124 HOH HOH A . E 4 HOH 168 398 127 HOH HOH A . E 4 HOH 169 399 128 HOH HOH A . E 4 HOH 170 400 129 HOH HOH A . E 4 HOH 171 401 130 HOH HOH A . E 4 HOH 172 402 131 HOH HOH A . E 4 HOH 173 403 134 HOH HOH A . E 4 HOH 174 404 135 HOH HOH A . E 4 HOH 175 405 138 HOH HOH A . E 4 HOH 176 406 139 HOH HOH A . E 4 HOH 177 407 140 HOH HOH A . E 4 HOH 178 408 141 HOH HOH A . E 4 HOH 179 409 142 HOH HOH A . E 4 HOH 180 410 143 HOH HOH A . E 4 HOH 181 411 144 HOH HOH A . E 4 HOH 182 412 145 HOH HOH A . E 4 HOH 183 413 146 HOH HOH A . E 4 HOH 184 414 147 HOH HOH A . E 4 HOH 185 415 149 HOH HOH A . E 4 HOH 186 416 150 HOH HOH A . E 4 HOH 187 417 151 HOH HOH A . E 4 HOH 188 418 152 HOH HOH A . E 4 HOH 189 419 153 HOH HOH A . E 4 HOH 190 420 154 HOH HOH A . E 4 HOH 191 421 155 HOH HOH A . E 4 HOH 192 422 156 HOH HOH A . E 4 HOH 193 423 157 HOH HOH A . E 4 HOH 194 424 158 HOH HOH A . E 4 HOH 195 425 159 HOH HOH A . E 4 HOH 196 426 160 HOH HOH A . E 4 HOH 197 427 161 HOH HOH A . E 4 HOH 198 428 162 HOH HOH A . E 4 HOH 199 429 163 HOH HOH A . E 4 HOH 200 430 164 HOH HOH A . E 4 HOH 201 431 165 HOH HOH A . E 4 HOH 202 432 166 HOH HOH A . E 4 HOH 203 433 168 HOH HOH A . E 4 HOH 204 434 169 HOH HOH A . E 4 HOH 205 435 170 HOH HOH A . E 4 HOH 206 436 171 HOH HOH A . E 4 HOH 207 437 172 HOH HOH A . E 4 HOH 208 438 173 HOH HOH A . E 4 HOH 209 439 175 HOH HOH A . E 4 HOH 210 440 176 HOH HOH A . E 4 HOH 211 441 177 HOH HOH A . E 4 HOH 212 442 178 HOH HOH A . E 4 HOH 213 443 179 HOH HOH A . E 4 HOH 214 444 181 HOH HOH A . E 4 HOH 215 445 182 HOH HOH A . E 4 HOH 216 446 183 HOH HOH A . E 4 HOH 217 447 184 HOH HOH A . E 4 HOH 218 448 185 HOH HOH A . E 4 HOH 219 449 186 HOH HOH A . E 4 HOH 220 450 187 HOH HOH A . E 4 HOH 221 451 188 HOH HOH A . E 4 HOH 222 452 189 HOH HOH A . E 4 HOH 223 453 191 HOH HOH A . E 4 HOH 224 454 192 HOH HOH A . E 4 HOH 225 455 193 HOH HOH A . E 4 HOH 226 456 194 HOH HOH A . E 4 HOH 227 457 195 HOH HOH A . E 4 HOH 228 458 196 HOH HOH A . E 4 HOH 229 459 197 HOH HOH A . E 4 HOH 230 460 198 HOH HOH A . E 4 HOH 231 461 199 HOH HOH A . E 4 HOH 232 462 201 HOH HOH A . E 4 HOH 233 463 202 HOH HOH A . E 4 HOH 234 464 203 HOH HOH A . E 4 HOH 235 465 204 HOH HOH A . E 4 HOH 236 466 206 HOH HOH A . E 4 HOH 237 467 207 HOH HOH A . E 4 HOH 238 468 208 HOH HOH A . E 4 HOH 239 469 210 HOH HOH A . E 4 HOH 240 470 211 HOH HOH A . E 4 HOH 241 471 212 HOH HOH A . E 4 HOH 242 472 213 HOH HOH A . E 4 HOH 243 473 215 HOH HOH A . E 4 HOH 244 474 216 HOH HOH A . E 4 HOH 245 475 217 HOH HOH A . E 4 HOH 246 476 218 HOH HOH A . E 4 HOH 247 477 220 HOH HOH A . E 4 HOH 248 478 222 HOH HOH A . E 4 HOH 249 479 223 HOH HOH A . E 4 HOH 250 480 224 HOH HOH A . E 4 HOH 251 481 225 HOH HOH A . E 4 HOH 252 482 226 HOH HOH A . E 4 HOH 253 483 230 HOH HOH A . #