data_3I32 # _entry.id 3I32 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I32 pdb_00003i32 10.2210/pdb3i32/pdb RCSB RCSB053901 ? ? WWPDB D_1000053901 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3I31 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I32 _pdbx_database_status.recvd_initial_deposition_date 2009-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rudolph, M.G.' 1 'Klostermeier, D.' 2 # _citation.id primary _citation.title ;The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core. ; _citation.journal_abbrev Rna _citation.journal_volume 15 _citation.page_first 1993 _citation.page_last 2001 _citation.year 2009 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19710183 _citation.pdbx_database_id_DOI 10.1261/rna.1820009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rudolph, M.G.' 1 ? primary 'Klostermeier, D.' 2 ? # _cell.entry_id 3I32 _cell.length_a 64.960 _cell.length_b 64.960 _cell.length_c 153.564 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I32 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heat resistant RNA dependent ATPase' 33422.383 1 ? ? 'residues 218-517' ? 2 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAPAERSLLTGEEGWRTYKATGPRLSLPRL VALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA ; _entity_poly.pdbx_seq_one_letter_code_can ;VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAPAERSLLTGEEGWRTYKATGPRLSLPRL VALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 TYR n 1 4 GLU n 1 5 GLU n 1 6 GLU n 1 7 ALA n 1 8 VAL n 1 9 PRO n 1 10 ALA n 1 11 PRO n 1 12 VAL n 1 13 ARG n 1 14 GLY n 1 15 ARG n 1 16 LEU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 SER n 1 21 ASP n 1 22 LEU n 1 23 LEU n 1 24 TYR n 1 25 VAL n 1 26 ALA n 1 27 SER n 1 28 PRO n 1 29 ASP n 1 30 ARG n 1 31 ALA n 1 32 MET n 1 33 VAL n 1 34 PHE n 1 35 THR n 1 36 ARG n 1 37 THR n 1 38 LYS n 1 39 ALA n 1 40 GLU n 1 41 THR n 1 42 GLU n 1 43 GLU n 1 44 ILE n 1 45 ALA n 1 46 GLN n 1 47 GLY n 1 48 LEU n 1 49 LEU n 1 50 ARG n 1 51 LEU n 1 52 GLY n 1 53 HIS n 1 54 PRO n 1 55 ALA n 1 56 GLN n 1 57 ALA n 1 58 LEU n 1 59 HIS n 1 60 GLY n 1 61 ASP n 1 62 MET n 1 63 SER n 1 64 GLN n 1 65 GLY n 1 66 GLU n 1 67 ARG n 1 68 GLU n 1 69 ARG n 1 70 VAL n 1 71 MET n 1 72 GLY n 1 73 ALA n 1 74 PHE n 1 75 ARG n 1 76 GLN n 1 77 GLY n 1 78 GLU n 1 79 VAL n 1 80 ARG n 1 81 VAL n 1 82 LEU n 1 83 VAL n 1 84 ALA n 1 85 THR n 1 86 ASP n 1 87 VAL n 1 88 ALA n 1 89 ALA n 1 90 ARG n 1 91 GLY n 1 92 LEU n 1 93 ASP n 1 94 ILE n 1 95 PRO n 1 96 GLN n 1 97 VAL n 1 98 ASP n 1 99 LEU n 1 100 VAL n 1 101 VAL n 1 102 HIS n 1 103 TYR n 1 104 ARG n 1 105 MET n 1 106 PRO n 1 107 ASP n 1 108 ARG n 1 109 ALA n 1 110 GLU n 1 111 ALA n 1 112 TYR n 1 113 GLN n 1 114 HIS n 1 115 ARG n 1 116 SER n 1 117 GLY n 1 118 ARG n 1 119 THR n 1 120 GLY n 1 121 ARG n 1 122 ALA n 1 123 GLY n 1 124 ARG n 1 125 GLY n 1 126 GLY n 1 127 ARG n 1 128 VAL n 1 129 VAL n 1 130 LEU n 1 131 LEU n 1 132 TYR n 1 133 GLY n 1 134 PRO n 1 135 ARG n 1 136 GLU n 1 137 ARG n 1 138 ARG n 1 139 ASP n 1 140 VAL n 1 141 GLU n 1 142 ALA n 1 143 LEU n 1 144 GLU n 1 145 ARG n 1 146 ALA n 1 147 VAL n 1 148 GLY n 1 149 ARG n 1 150 ARG n 1 151 PHE n 1 152 LYS n 1 153 ARG n 1 154 VAL n 1 155 ASN n 1 156 PRO n 1 157 PRO n 1 158 THR n 1 159 PRO n 1 160 GLU n 1 161 GLU n 1 162 VAL n 1 163 LEU n 1 164 GLU n 1 165 ALA n 1 166 LYS n 1 167 TRP n 1 168 ARG n 1 169 HIS n 1 170 LEU n 1 171 LEU n 1 172 ALA n 1 173 ARG n 1 174 LEU n 1 175 ALA n 1 176 ARG n 1 177 VAL n 1 178 PRO n 1 179 GLU n 1 180 LYS n 1 181 ASP n 1 182 TYR n 1 183 ARG n 1 184 LEU n 1 185 TYR n 1 186 GLN n 1 187 ASP n 1 188 PHE n 1 189 ALA n 1 190 GLY n 1 191 ARG n 1 192 LEU n 1 193 PHE n 1 194 ALA n 1 195 GLU n 1 196 GLY n 1 197 ARG n 1 198 VAL n 1 199 GLU n 1 200 VAL n 1 201 VAL n 1 202 ALA n 1 203 ALA n 1 204 LEU n 1 205 LEU n 1 206 ALA n 1 207 LEU n 1 208 LEU n 1 209 LEU n 1 210 GLY n 1 211 GLY n 1 212 ALA n 1 213 PRO n 1 214 ALA n 1 215 GLU n 1 216 ARG n 1 217 SER n 1 218 LEU n 1 219 LEU n 1 220 THR n 1 221 GLY n 1 222 GLU n 1 223 GLU n 1 224 GLY n 1 225 TRP n 1 226 ARG n 1 227 THR n 1 228 TYR n 1 229 LYS n 1 230 ALA n 1 231 THR n 1 232 GLY n 1 233 PRO n 1 234 ARG n 1 235 LEU n 1 236 SER n 1 237 LEU n 1 238 PRO n 1 239 ARG n 1 240 LEU n 1 241 VAL n 1 242 ALA n 1 243 LEU n 1 244 LEU n 1 245 LYS n 1 246 GLY n 1 247 GLN n 1 248 GLY n 1 249 LEU n 1 250 GLU n 1 251 VAL n 1 252 GLY n 1 253 LYS n 1 254 VAL n 1 255 ALA n 1 256 GLU n 1 257 ALA n 1 258 GLU n 1 259 GLY n 1 260 GLY n 1 261 PHE n 1 262 TYR n 1 263 VAL n 1 264 ASP n 1 265 LEU n 1 266 ARG n 1 267 PRO n 1 268 GLU n 1 269 ALA n 1 270 ARG n 1 271 PRO n 1 272 GLU n 1 273 VAL n 1 274 ALA n 1 275 GLY n 1 276 LEU n 1 277 ARG n 1 278 LEU n 1 279 GLU n 1 280 PRO n 1 281 ALA n 1 282 ARG n 1 283 ARG n 1 284 VAL n 1 285 GLU n 1 286 GLY n 1 287 LEU n 1 288 LEU n 1 289 GLU n 1 290 ILE n 1 291 PRO n 1 292 SER n 1 293 ARG n 1 294 THR n 1 295 ARG n 1 296 ARG n 1 297 PRO n 1 298 ALA n 1 299 ARG n 1 300 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TT_C1895 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB27 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262724 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q72GF3_THET2 _struct_ref.pdbx_db_accession Q72GF3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAPAERSLLTGEEGWRTYKATGPRLSLPRL VALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA ; _struct_ref.pdbx_align_begin 218 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3I32 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 300 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q72GF3 _struct_ref_seq.db_align_beg 218 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 517 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 211 _struct_ref_seq.pdbx_auth_seq_align_end 510 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I32 MET A 62 ? UNP Q72GF3 LEU 279 'engineered mutation' 272 1 1 3I32 MET A 71 ? UNP Q72GF3 LEU 288 'engineered mutation' 281 2 1 3I32 MET A 105 ? UNP Q72GF3 LEU 322 'engineered mutation' 315 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3I32 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 5 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1 M MES-NaOH pH 6.5, 15-18% ethylene glycol, 0.3-0.5 M NaCl, 3-6% PEG 20 000, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3I32 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.42 _reflns.d_resolution_high 2.5 _reflns.number_obs 12078 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.2 _reflns.B_iso_Wilson_estimate 100 _reflns.pdbx_redundancy 50.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.56 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.911 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 51.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 679 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3I32 _refine.ls_number_reflns_obs 12022 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.14 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.42 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.10 _refine.ls_R_factor_obs 0.2553 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2533 _refine.ls_R_factor_R_free 0.2925 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.83 _refine.ls_number_reflns_R_free 732 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 118.830 _refine.aniso_B[1][1] -16.252 _refine.aniso_B[2][2] -16.252 _refine.aniso_B[3][3] 15.365 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.333 _refine.solvent_model_param_bsol 84.992 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'Hera RBD and 2eaq' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.83 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_max 211.75 _refine.B_iso_min 50.48 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2164 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 39.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2201 'X-RAY DIFFRACTION' ? f_angle_d 1.155 ? ? 2977 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.369 ? ? 840 'X-RAY DIFFRACTION' ? f_chiral_restr 0.069 ? ? 327 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 397 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.800 3.0163 2766 0.3279 94.00 0.3586 . . 126 . . . . 'X-RAY DIFFRACTION' . 3.0163 3.3197 2875 0.3014 98.00 0.3771 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.3197 3.7997 2923 0.2959 100.00 0.3706 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.7997 4.7859 2962 0.2398 100.00 0.3145 . . 132 . . . . 'X-RAY DIFFRACTION' . 4.7859 39.4223 2910 0.2259 100.00 0.2339 . . 172 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3I32 _struct.title ;Dimeric structure of a Hera helicase fragment including the C-terminal RecA domain, the dimerization domain, and the RNA binding domain ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I32 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN,Hydrolase' _struct_keywords.text 'RNA helicase, ATPase, Dimer, RNA recognition motif, ATP-binding, Helicase, Nucleotide-binding, RNA BINDING PROTEIN, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 14 ? SER A 27 ? GLY A 224 SER A 237 1 ? 14 HELX_P HELX_P2 2 THR A 37 ? ARG A 50 ? THR A 247 ARG A 260 1 ? 14 HELX_P HELX_P3 3 GLN A 64 ? GLN A 76 ? GLN A 274 GLN A 286 1 ? 13 HELX_P HELX_P4 4 GLU A 110 ? GLY A 117 ? GLU A 320 GLY A 327 1 ? 8 HELX_P HELX_P5 5 GLU A 136 ? GLY A 148 ? GLU A 346 GLY A 358 1 ? 13 HELX_P HELX_P6 6 THR A 158 ? ALA A 175 ? THR A 368 ALA A 385 1 ? 18 HELX_P HELX_P7 7 PRO A 178 ? LEU A 184 ? PRO A 388 LEU A 394 1 ? 7 HELX_P HELX_P8 8 TYR A 185 ? GLY A 196 ? TYR A 395 GLY A 406 1 ? 12 HELX_P HELX_P9 9 ARG A 197 ? GLY A 210 ? ARG A 407 GLY A 420 1 ? 14 HELX_P HELX_P10 10 SER A 236 ? GLN A 247 ? SER A 446 GLN A 457 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 55 ? LEU A 58 ? ALA A 265 LEU A 268 A 2 VAL A 81 ? ALA A 84 ? VAL A 291 ALA A 294 A 3 ALA A 31 ? PHE A 34 ? ALA A 241 PHE A 244 A 4 LEU A 99 ? HIS A 102 ? LEU A 309 HIS A 312 A 5 ARG A 127 ? TYR A 132 ? ARG A 337 TYR A 342 A 6 GLU A 4 ? PRO A 9 ? GLU A 214 PRO A 219 A 7 LYS A 152 ? ARG A 153 ? LYS A 362 ARG A 363 B 1 VAL A 254 ? ALA A 257 ? VAL A 464 ALA A 467 B 2 GLY A 260 ? VAL A 263 ? GLY A 470 VAL A 473 B 3 TYR A 228 ? THR A 231 ? TYR A 438 THR A 441 B 4 ARG A 277 ? PRO A 280 ? ARG A 487 PRO A 490 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 56 ? N GLN A 266 O VAL A 83 ? O VAL A 293 A 2 3 O LEU A 82 ? O LEU A 292 N VAL A 33 ? N VAL A 243 A 3 4 N MET A 32 ? N MET A 242 O LEU A 99 ? O LEU A 309 A 4 5 N HIS A 102 ? N HIS A 312 O VAL A 129 ? O VAL A 339 A 5 6 O VAL A 128 ? O VAL A 338 N GLU A 4 ? N GLU A 214 A 6 7 N ALA A 7 ? N ALA A 217 O LYS A 152 ? O LYS A 362 B 1 2 N ALA A 255 ? N ALA A 465 O TYR A 262 ? O TYR A 472 B 2 3 O PHE A 261 ? O PHE A 471 N ALA A 230 ? N ALA A 440 B 3 4 N LYS A 229 ? N LYS A 439 O GLU A 279 ? O GLU A 489 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BR _struct_site.pdbx_auth_seq_id 512 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE BR A 512' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id LEU _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 237 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id LEU _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 447 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 3I32 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3I32 _atom_sites.fract_transf_matrix[1][1] 0.015394 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015394 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006512 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 211 211 VAL VAL A . n A 1 2 THR 2 212 212 THR THR A . n A 1 3 TYR 3 213 213 TYR TYR A . n A 1 4 GLU 4 214 214 GLU GLU A . n A 1 5 GLU 5 215 215 GLU GLU A . n A 1 6 GLU 6 216 216 GLU GLU A . n A 1 7 ALA 7 217 217 ALA ALA A . n A 1 8 VAL 8 218 218 VAL VAL A . n A 1 9 PRO 9 219 219 PRO PRO A . n A 1 10 ALA 10 220 220 ALA ALA A . n A 1 11 PRO 11 221 221 PRO PRO A . n A 1 12 VAL 12 222 222 VAL VAL A . n A 1 13 ARG 13 223 223 ARG ARG A . n A 1 14 GLY 14 224 224 GLY GLY A . n A 1 15 ARG 15 225 225 ARG ARG A . n A 1 16 LEU 16 226 226 LEU LEU A . n A 1 17 GLU 17 227 227 GLU GLU A . n A 1 18 VAL 18 228 228 VAL VAL A . n A 1 19 LEU 19 229 229 LEU LEU A . n A 1 20 SER 20 230 230 SER SER A . n A 1 21 ASP 21 231 231 ASP ASP A . n A 1 22 LEU 22 232 232 LEU LEU A . n A 1 23 LEU 23 233 233 LEU LEU A . n A 1 24 TYR 24 234 234 TYR TYR A . n A 1 25 VAL 25 235 235 VAL VAL A . n A 1 26 ALA 26 236 236 ALA ALA A . n A 1 27 SER 27 237 237 SER SER A . n A 1 28 PRO 28 238 238 PRO PRO A . n A 1 29 ASP 29 239 239 ASP ASP A . n A 1 30 ARG 30 240 240 ARG ARG A . n A 1 31 ALA 31 241 241 ALA ALA A . n A 1 32 MET 32 242 242 MET MET A . n A 1 33 VAL 33 243 243 VAL VAL A . n A 1 34 PHE 34 244 244 PHE PHE A . n A 1 35 THR 35 245 245 THR THR A . n A 1 36 ARG 36 246 246 ARG ARG A . n A 1 37 THR 37 247 247 THR THR A . n A 1 38 LYS 38 248 248 LYS LYS A . n A 1 39 ALA 39 249 249 ALA ALA A . n A 1 40 GLU 40 250 250 GLU GLU A . n A 1 41 THR 41 251 251 THR THR A . n A 1 42 GLU 42 252 252 GLU GLU A . n A 1 43 GLU 43 253 253 GLU GLU A . n A 1 44 ILE 44 254 254 ILE ILE A . n A 1 45 ALA 45 255 255 ALA ALA A . n A 1 46 GLN 46 256 256 GLN GLN A . n A 1 47 GLY 47 257 257 GLY GLY A . n A 1 48 LEU 48 258 258 LEU LEU A . n A 1 49 LEU 49 259 259 LEU LEU A . n A 1 50 ARG 50 260 260 ARG ARG A . n A 1 51 LEU 51 261 261 LEU LEU A . n A 1 52 GLY 52 262 262 GLY GLY A . n A 1 53 HIS 53 263 263 HIS HIS A . n A 1 54 PRO 54 264 264 PRO PRO A . n A 1 55 ALA 55 265 265 ALA ALA A . n A 1 56 GLN 56 266 266 GLN GLN A . n A 1 57 ALA 57 267 267 ALA ALA A . n A 1 58 LEU 58 268 268 LEU LEU A . n A 1 59 HIS 59 269 269 HIS HIS A . n A 1 60 GLY 60 270 270 GLY GLY A . n A 1 61 ASP 61 271 271 ASP ASP A . n A 1 62 MET 62 272 272 MET MET A . n A 1 63 SER 63 273 273 SER SER A . n A 1 64 GLN 64 274 274 GLN GLN A . n A 1 65 GLY 65 275 275 GLY GLY A . n A 1 66 GLU 66 276 276 GLU GLU A . n A 1 67 ARG 67 277 277 ARG ARG A . n A 1 68 GLU 68 278 278 GLU GLU A . n A 1 69 ARG 69 279 279 ARG ARG A . n A 1 70 VAL 70 280 280 VAL VAL A . n A 1 71 MET 71 281 281 MET MET A . n A 1 72 GLY 72 282 282 GLY GLY A . n A 1 73 ALA 73 283 283 ALA ALA A . n A 1 74 PHE 74 284 284 PHE PHE A . n A 1 75 ARG 75 285 285 ARG ARG A . n A 1 76 GLN 76 286 286 GLN GLN A . n A 1 77 GLY 77 287 287 GLY GLY A . n A 1 78 GLU 78 288 288 GLU GLU A . n A 1 79 VAL 79 289 289 VAL VAL A . n A 1 80 ARG 80 290 290 ARG ARG A . n A 1 81 VAL 81 291 291 VAL VAL A . n A 1 82 LEU 82 292 292 LEU LEU A . n A 1 83 VAL 83 293 293 VAL VAL A . n A 1 84 ALA 84 294 294 ALA ALA A . n A 1 85 THR 85 295 295 THR THR A . n A 1 86 ASP 86 296 296 ASP ASP A . n A 1 87 VAL 87 297 297 VAL VAL A . n A 1 88 ALA 88 298 298 ALA ALA A . n A 1 89 ALA 89 299 299 ALA ALA A . n A 1 90 ARG 90 300 300 ARG ARG A . n A 1 91 GLY 91 301 301 GLY GLY A . n A 1 92 LEU 92 302 302 LEU LEU A . n A 1 93 ASP 93 303 303 ASP ASP A . n A 1 94 ILE 94 304 304 ILE ILE A . n A 1 95 PRO 95 305 305 PRO PRO A . n A 1 96 GLN 96 306 306 GLN GLN A . n A 1 97 VAL 97 307 307 VAL VAL A . n A 1 98 ASP 98 308 308 ASP ASP A . n A 1 99 LEU 99 309 309 LEU LEU A . n A 1 100 VAL 100 310 310 VAL VAL A . n A 1 101 VAL 101 311 311 VAL VAL A . n A 1 102 HIS 102 312 312 HIS HIS A . n A 1 103 TYR 103 313 313 TYR TYR A . n A 1 104 ARG 104 314 314 ARG ARG A . n A 1 105 MET 105 315 315 MET MET A . n A 1 106 PRO 106 316 316 PRO PRO A . n A 1 107 ASP 107 317 317 ASP ASP A . n A 1 108 ARG 108 318 318 ARG ARG A . n A 1 109 ALA 109 319 319 ALA ALA A . n A 1 110 GLU 110 320 320 GLU GLU A . n A 1 111 ALA 111 321 321 ALA ALA A . n A 1 112 TYR 112 322 322 TYR TYR A . n A 1 113 GLN 113 323 323 GLN GLN A . n A 1 114 HIS 114 324 324 HIS HIS A . n A 1 115 ARG 115 325 325 ARG ARG A . n A 1 116 SER 116 326 326 SER SER A . n A 1 117 GLY 117 327 327 GLY GLY A . n A 1 118 ARG 118 328 328 ARG ARG A . n A 1 119 THR 119 329 329 THR THR A . n A 1 120 GLY 120 330 ? ? ? A . n A 1 121 ARG 121 331 ? ? ? A . n A 1 122 ALA 122 332 ? ? ? A . n A 1 123 GLY 123 333 ? ? ? A . n A 1 124 ARG 124 334 ? ? ? A . n A 1 125 GLY 125 335 335 GLY GLY A . n A 1 126 GLY 126 336 336 GLY GLY A . n A 1 127 ARG 127 337 337 ARG ARG A . n A 1 128 VAL 128 338 338 VAL VAL A . n A 1 129 VAL 129 339 339 VAL VAL A . n A 1 130 LEU 130 340 340 LEU LEU A . n A 1 131 LEU 131 341 341 LEU LEU A . n A 1 132 TYR 132 342 342 TYR TYR A . n A 1 133 GLY 133 343 343 GLY GLY A . n A 1 134 PRO 134 344 344 PRO PRO A . n A 1 135 ARG 135 345 345 ARG ARG A . n A 1 136 GLU 136 346 346 GLU GLU A . n A 1 137 ARG 137 347 347 ARG ARG A . n A 1 138 ARG 138 348 348 ARG ARG A . n A 1 139 ASP 139 349 349 ASP ASP A . n A 1 140 VAL 140 350 350 VAL VAL A . n A 1 141 GLU 141 351 351 GLU GLU A . n A 1 142 ALA 142 352 352 ALA ALA A . n A 1 143 LEU 143 353 353 LEU LEU A . n A 1 144 GLU 144 354 354 GLU GLU A . n A 1 145 ARG 145 355 355 ARG ARG A . n A 1 146 ALA 146 356 356 ALA ALA A . n A 1 147 VAL 147 357 357 VAL VAL A . n A 1 148 GLY 148 358 358 GLY GLY A . n A 1 149 ARG 149 359 359 ARG ARG A . n A 1 150 ARG 150 360 360 ARG ARG A . n A 1 151 PHE 151 361 361 PHE PHE A . n A 1 152 LYS 152 362 362 LYS LYS A . n A 1 153 ARG 153 363 363 ARG ARG A . n A 1 154 VAL 154 364 364 VAL VAL A . n A 1 155 ASN 155 365 365 ASN ASN A . n A 1 156 PRO 156 366 366 PRO PRO A . n A 1 157 PRO 157 367 367 PRO PRO A . n A 1 158 THR 158 368 368 THR THR A . n A 1 159 PRO 159 369 369 PRO PRO A . n A 1 160 GLU 160 370 370 GLU GLU A . n A 1 161 GLU 161 371 371 GLU GLU A . n A 1 162 VAL 162 372 372 VAL VAL A . n A 1 163 LEU 163 373 373 LEU LEU A . n A 1 164 GLU 164 374 374 GLU GLU A . n A 1 165 ALA 165 375 375 ALA ALA A . n A 1 166 LYS 166 376 376 LYS LYS A . n A 1 167 TRP 167 377 377 TRP TRP A . n A 1 168 ARG 168 378 378 ARG ARG A . n A 1 169 HIS 169 379 379 HIS HIS A . n A 1 170 LEU 170 380 380 LEU LEU A . n A 1 171 LEU 171 381 381 LEU LEU A . n A 1 172 ALA 172 382 382 ALA ALA A . n A 1 173 ARG 173 383 383 ARG ARG A . n A 1 174 LEU 174 384 384 LEU LEU A . n A 1 175 ALA 175 385 385 ALA ALA A . n A 1 176 ARG 176 386 386 ARG ARG A . n A 1 177 VAL 177 387 387 VAL VAL A . n A 1 178 PRO 178 388 388 PRO PRO A . n A 1 179 GLU 179 389 389 GLU GLU A . n A 1 180 LYS 180 390 390 LYS LYS A . n A 1 181 ASP 181 391 391 ASP ASP A . n A 1 182 TYR 182 392 392 TYR TYR A . n A 1 183 ARG 183 393 393 ARG ARG A . n A 1 184 LEU 184 394 394 LEU LEU A . n A 1 185 TYR 185 395 395 TYR TYR A . n A 1 186 GLN 186 396 396 GLN GLN A . n A 1 187 ASP 187 397 397 ASP ASP A . n A 1 188 PHE 188 398 398 PHE PHE A . n A 1 189 ALA 189 399 399 ALA ALA A . n A 1 190 GLY 190 400 400 GLY GLY A . n A 1 191 ARG 191 401 401 ARG ARG A . n A 1 192 LEU 192 402 402 LEU LEU A . n A 1 193 PHE 193 403 403 PHE PHE A . n A 1 194 ALA 194 404 404 ALA ALA A . n A 1 195 GLU 195 405 405 GLU GLU A . n A 1 196 GLY 196 406 406 GLY GLY A . n A 1 197 ARG 197 407 407 ARG ARG A . n A 1 198 VAL 198 408 408 VAL VAL A . n A 1 199 GLU 199 409 409 GLU GLU A . n A 1 200 VAL 200 410 410 VAL VAL A . n A 1 201 VAL 201 411 411 VAL VAL A . n A 1 202 ALA 202 412 412 ALA ALA A . n A 1 203 ALA 203 413 413 ALA ALA A . n A 1 204 LEU 204 414 414 LEU LEU A . n A 1 205 LEU 205 415 415 LEU LEU A . n A 1 206 ALA 206 416 416 ALA ALA A . n A 1 207 LEU 207 417 417 LEU LEU A . n A 1 208 LEU 208 418 418 LEU LEU A . n A 1 209 LEU 209 419 419 LEU LEU A . n A 1 210 GLY 210 420 420 GLY GLY A . n A 1 211 GLY 211 421 421 GLY GLY A . n A 1 212 ALA 212 422 422 ALA ALA A . n A 1 213 PRO 213 423 423 PRO PRO A . n A 1 214 ALA 214 424 424 ALA ALA A . n A 1 215 GLU 215 425 425 GLU GLU A . n A 1 216 ARG 216 426 426 ARG ARG A . n A 1 217 SER 217 427 427 SER SER A . n A 1 218 LEU 218 428 428 LEU LEU A . n A 1 219 LEU 219 429 429 LEU LEU A . n A 1 220 THR 220 430 430 THR THR A . n A 1 221 GLY 221 431 431 GLY GLY A . n A 1 222 GLU 222 432 432 GLU GLU A . n A 1 223 GLU 223 433 433 GLU GLU A . n A 1 224 GLY 224 434 434 GLY GLY A . n A 1 225 TRP 225 435 435 TRP TRP A . n A 1 226 ARG 226 436 436 ARG ARG A . n A 1 227 THR 227 437 437 THR THR A . n A 1 228 TYR 228 438 438 TYR TYR A . n A 1 229 LYS 229 439 439 LYS LYS A . n A 1 230 ALA 230 440 440 ALA ALA A . n A 1 231 THR 231 441 441 THR THR A . n A 1 232 GLY 232 442 442 GLY GLY A . n A 1 233 PRO 233 443 443 PRO PRO A . n A 1 234 ARG 234 444 444 ARG ARG A . n A 1 235 LEU 235 445 445 LEU LEU A . n A 1 236 SER 236 446 446 SER SER A . n A 1 237 LEU 237 447 447 LEU LEU A . n A 1 238 PRO 238 448 448 PRO PRO A . n A 1 239 ARG 239 449 449 ARG ARG A . n A 1 240 LEU 240 450 450 LEU LEU A . n A 1 241 VAL 241 451 451 VAL VAL A . n A 1 242 ALA 242 452 452 ALA ALA A . n A 1 243 LEU 243 453 453 LEU LEU A . n A 1 244 LEU 244 454 454 LEU LEU A . n A 1 245 LYS 245 455 455 LYS LYS A . n A 1 246 GLY 246 456 456 GLY GLY A . n A 1 247 GLN 247 457 457 GLN GLN A . n A 1 248 GLY 248 458 458 GLY GLY A . n A 1 249 LEU 249 459 459 LEU LEU A . n A 1 250 GLU 250 460 460 GLU GLU A . n A 1 251 VAL 251 461 461 VAL VAL A . n A 1 252 GLY 252 462 462 GLY GLY A . n A 1 253 LYS 253 463 463 LYS LYS A . n A 1 254 VAL 254 464 464 VAL VAL A . n A 1 255 ALA 255 465 465 ALA ALA A . n A 1 256 GLU 256 466 466 GLU GLU A . n A 1 257 ALA 257 467 467 ALA ALA A . n A 1 258 GLU 258 468 468 GLU GLU A . n A 1 259 GLY 259 469 469 GLY GLY A . n A 1 260 GLY 260 470 470 GLY GLY A . n A 1 261 PHE 261 471 471 PHE PHE A . n A 1 262 TYR 262 472 472 TYR TYR A . n A 1 263 VAL 263 473 473 VAL VAL A . n A 1 264 ASP 264 474 474 ASP ASP A . n A 1 265 LEU 265 475 475 LEU LEU A . n A 1 266 ARG 266 476 476 ARG ARG A . n A 1 267 PRO 267 477 477 PRO PRO A . n A 1 268 GLU 268 478 478 GLU GLU A . n A 1 269 ALA 269 479 479 ALA ALA A . n A 1 270 ARG 270 480 480 ARG ARG A . n A 1 271 PRO 271 481 481 PRO PRO A . n A 1 272 GLU 272 482 482 GLU GLU A . n A 1 273 VAL 273 483 483 VAL VAL A . n A 1 274 ALA 274 484 484 ALA ALA A . n A 1 275 GLY 275 485 485 GLY GLY A . n A 1 276 LEU 276 486 486 LEU LEU A . n A 1 277 ARG 277 487 487 ARG ARG A . n A 1 278 LEU 278 488 488 LEU LEU A . n A 1 279 GLU 279 489 489 GLU GLU A . n A 1 280 PRO 280 490 490 PRO PRO A . n A 1 281 ALA 281 491 491 ALA ALA A . n A 1 282 ARG 282 492 ? ? ? A . n A 1 283 ARG 283 493 ? ? ? A . n A 1 284 VAL 284 494 ? ? ? A . n A 1 285 GLU 285 495 ? ? ? A . n A 1 286 GLY 286 496 ? ? ? A . n A 1 287 LEU 287 497 ? ? ? A . n A 1 288 LEU 288 498 ? ? ? A . n A 1 289 GLU 289 499 ? ? ? A . n A 1 290 ILE 290 500 ? ? ? A . n A 1 291 PRO 291 501 ? ? ? A . n A 1 292 SER 292 502 ? ? ? A . n A 1 293 ARG 293 503 ? ? ? A . n A 1 294 THR 294 504 ? ? ? A . n A 1 295 ARG 295 505 ? ? ? A . n A 1 296 ARG 296 506 ? ? ? A . n A 1 297 PRO 297 507 ? ? ? A . n A 1 298 ALA 298 508 ? ? ? A . n A 1 299 ARG 299 509 ? ? ? A . n A 1 300 ALA 300 510 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR 1 511 492 BR BR A . C 2 BR 1 512 493 BR BR A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4060 ? 1 MORE -43 ? 1 'SSA (A^2)' 28600 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -19.6212 -28.8579 -16.0788 0.5880 1.0363 0.5508 0.0703 -0.0374 -0.2266 3.7625 3.0919 4.1976 0.7036 2.1228 0.4878 -0.0979 -0.1818 0.3296 -1.2968 0.1136 0.2432 -0.0056 -0.2836 -1.3935 'X-RAY DIFFRACTION' 2 ? refined -8.4478 -20.4417 -13.4835 0.6003 0.6750 0.8020 0.0233 0.0039 -0.2218 0.6805 2.0679 2.5821 0.5700 0.4661 1.4437 0.0768 0.1515 -0.2292 0.1010 -0.1361 -0.1547 -0.2366 -0.1604 -0.0203 'X-RAY DIFFRACTION' 3 ? refined 13.3789 -38.7199 -10.6465 0.8501 0.7923 1.3109 0.0849 0.3811 -0.0453 1.4461 2.7401 2.2265 -1.0152 0.2626 0.3488 0.0364 -0.7972 0.7626 0.0893 1.8468 -1.8408 -0.6554 -0.1713 0.5564 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 211 A 318 'chain A and (resid 211:318)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 319 A 424 'chain A and (resid 319:424)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 425 A 491 'chain A and (resid 425:491)' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 PHENIX refinement '(phenix.refine)' ? 2 XDS 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 245 ? ? -112.29 -167.00 2 1 PRO A 264 ? ? -66.06 84.83 3 1 LEU A 268 ? ? -165.75 112.29 4 1 HIS A 269 ? ? -135.16 -44.93 5 1 GLN A 274 ? ? -35.69 -39.77 6 1 GLU A 276 ? ? -92.66 38.05 7 1 ALA A 298 ? ? -59.24 7.05 8 1 PRO A 305 ? ? -55.08 170.45 9 1 MET A 315 ? ? -45.04 155.05 10 1 ARG A 328 ? ? -78.57 35.51 11 1 PRO A 344 ? ? -47.74 32.15 12 1 ALA A 385 ? ? -65.29 1.70 13 1 ARG A 444 ? ? 36.41 36.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 330 ? A GLY 120 2 1 Y 1 A ARG 331 ? A ARG 121 3 1 Y 1 A ALA 332 ? A ALA 122 4 1 Y 1 A GLY 333 ? A GLY 123 5 1 Y 1 A ARG 334 ? A ARG 124 6 1 Y 1 A ARG 492 ? A ARG 282 7 1 Y 1 A ARG 493 ? A ARG 283 8 1 Y 1 A VAL 494 ? A VAL 284 9 1 Y 1 A GLU 495 ? A GLU 285 10 1 Y 1 A GLY 496 ? A GLY 286 11 1 Y 1 A LEU 497 ? A LEU 287 12 1 Y 1 A LEU 498 ? A LEU 288 13 1 Y 1 A GLU 499 ? A GLU 289 14 1 Y 1 A ILE 500 ? A ILE 290 15 1 Y 1 A PRO 501 ? A PRO 291 16 1 Y 1 A SER 502 ? A SER 292 17 1 Y 1 A ARG 503 ? A ARG 293 18 1 Y 1 A THR 504 ? A THR 294 19 1 Y 1 A ARG 505 ? A ARG 295 20 1 Y 1 A ARG 506 ? A ARG 296 21 1 Y 1 A PRO 507 ? A PRO 297 22 1 Y 1 A ALA 508 ? A ALA 298 23 1 Y 1 A ARG 509 ? A ARG 299 24 1 Y 1 A ALA 510 ? A ALA 300 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BR BR BR N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 ILE N N N N 145 ILE CA C N S 146 ILE C C N N 147 ILE O O N N 148 ILE CB C N S 149 ILE CG1 C N N 150 ILE CG2 C N N 151 ILE CD1 C N N 152 ILE OXT O N N 153 ILE H H N N 154 ILE H2 H N N 155 ILE HA H N N 156 ILE HB H N N 157 ILE HG12 H N N 158 ILE HG13 H N N 159 ILE HG21 H N N 160 ILE HG22 H N N 161 ILE HG23 H N N 162 ILE HD11 H N N 163 ILE HD12 H N N 164 ILE HD13 H N N 165 ILE HXT H N N 166 LEU N N N N 167 LEU CA C N S 168 LEU C C N N 169 LEU O O N N 170 LEU CB C N N 171 LEU CG C N N 172 LEU CD1 C N N 173 LEU CD2 C N N 174 LEU OXT O N N 175 LEU H H N N 176 LEU H2 H N N 177 LEU HA H N N 178 LEU HB2 H N N 179 LEU HB3 H N N 180 LEU HG H N N 181 LEU HD11 H N N 182 LEU HD12 H N N 183 LEU HD13 H N N 184 LEU HD21 H N N 185 LEU HD22 H N N 186 LEU HD23 H N N 187 LEU HXT H N N 188 LYS N N N N 189 LYS CA C N S 190 LYS C C N N 191 LYS O O N N 192 LYS CB C N N 193 LYS CG C N N 194 LYS CD C N N 195 LYS CE C N N 196 LYS NZ N N N 197 LYS OXT O N N 198 LYS H H N N 199 LYS H2 H N N 200 LYS HA H N N 201 LYS HB2 H N N 202 LYS HB3 H N N 203 LYS HG2 H N N 204 LYS HG3 H N N 205 LYS HD2 H N N 206 LYS HD3 H N N 207 LYS HE2 H N N 208 LYS HE3 H N N 209 LYS HZ1 H N N 210 LYS HZ2 H N N 211 LYS HZ3 H N N 212 LYS HXT H N N 213 MET N N N N 214 MET CA C N S 215 MET C C N N 216 MET O O N N 217 MET CB C N N 218 MET CG C N N 219 MET SD S N N 220 MET CE C N N 221 MET OXT O N N 222 MET H H N N 223 MET H2 H N N 224 MET HA H N N 225 MET HB2 H N N 226 MET HB3 H N N 227 MET HG2 H N N 228 MET HG3 H N N 229 MET HE1 H N N 230 MET HE2 H N N 231 MET HE3 H N N 232 MET HXT H N N 233 PHE N N N N 234 PHE CA C N S 235 PHE C C N N 236 PHE O O N N 237 PHE CB C N N 238 PHE CG C Y N 239 PHE CD1 C Y N 240 PHE CD2 C Y N 241 PHE CE1 C Y N 242 PHE CE2 C Y N 243 PHE CZ C Y N 244 PHE OXT O N N 245 PHE H H N N 246 PHE H2 H N N 247 PHE HA H N N 248 PHE HB2 H N N 249 PHE HB3 H N N 250 PHE HD1 H N N 251 PHE HD2 H N N 252 PHE HE1 H N N 253 PHE HE2 H N N 254 PHE HZ H N N 255 PHE HXT H N N 256 PRO N N N N 257 PRO CA C N S 258 PRO C C N N 259 PRO O O N N 260 PRO CB C N N 261 PRO CG C N N 262 PRO CD C N N 263 PRO OXT O N N 264 PRO H H N N 265 PRO HA H N N 266 PRO HB2 H N N 267 PRO HB3 H N N 268 PRO HG2 H N N 269 PRO HG3 H N N 270 PRO HD2 H N N 271 PRO HD3 H N N 272 PRO HXT H N N 273 SER N N N N 274 SER CA C N S 275 SER C C N N 276 SER O O N N 277 SER CB C N N 278 SER OG O N N 279 SER OXT O N N 280 SER H H N N 281 SER H2 H N N 282 SER HA H N N 283 SER HB2 H N N 284 SER HB3 H N N 285 SER HG H N N 286 SER HXT H N N 287 THR N N N N 288 THR CA C N S 289 THR C C N N 290 THR O O N N 291 THR CB C N R 292 THR OG1 O N N 293 THR CG2 C N N 294 THR OXT O N N 295 THR H H N N 296 THR H2 H N N 297 THR HA H N N 298 THR HB H N N 299 THR HG1 H N N 300 THR HG21 H N N 301 THR HG22 H N N 302 THR HG23 H N N 303 THR HXT H N N 304 TRP N N N N 305 TRP CA C N S 306 TRP C C N N 307 TRP O O N N 308 TRP CB C N N 309 TRP CG C Y N 310 TRP CD1 C Y N 311 TRP CD2 C Y N 312 TRP NE1 N Y N 313 TRP CE2 C Y N 314 TRP CE3 C Y N 315 TRP CZ2 C Y N 316 TRP CZ3 C Y N 317 TRP CH2 C Y N 318 TRP OXT O N N 319 TRP H H N N 320 TRP H2 H N N 321 TRP HA H N N 322 TRP HB2 H N N 323 TRP HB3 H N N 324 TRP HD1 H N N 325 TRP HE1 H N N 326 TRP HE3 H N N 327 TRP HZ2 H N N 328 TRP HZ3 H N N 329 TRP HH2 H N N 330 TRP HXT H N N 331 TYR N N N N 332 TYR CA C N S 333 TYR C C N N 334 TYR O O N N 335 TYR CB C N N 336 TYR CG C Y N 337 TYR CD1 C Y N 338 TYR CD2 C Y N 339 TYR CE1 C Y N 340 TYR CE2 C Y N 341 TYR CZ C Y N 342 TYR OH O N N 343 TYR OXT O N N 344 TYR H H N N 345 TYR H2 H N N 346 TYR HA H N N 347 TYR HB2 H N N 348 TYR HB3 H N N 349 TYR HD1 H N N 350 TYR HD2 H N N 351 TYR HE1 H N N 352 TYR HE2 H N N 353 TYR HH H N N 354 TYR HXT H N N 355 VAL N N N N 356 VAL CA C N S 357 VAL C C N N 358 VAL O O N N 359 VAL CB C N N 360 VAL CG1 C N N 361 VAL CG2 C N N 362 VAL OXT O N N 363 VAL H H N N 364 VAL H2 H N N 365 VAL HA H N N 366 VAL HB H N N 367 VAL HG11 H N N 368 VAL HG12 H N N 369 VAL HG13 H N N 370 VAL HG21 H N N 371 VAL HG22 H N N 372 VAL HG23 H N N 373 VAL HXT H N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'BROMIDE ION' _pdbx_entity_nonpoly.comp_id BR # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EAQ _pdbx_initial_refinement_model.details 'Hera RBD and 2eaq' #