data_3I8D # _entry.id 3I8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I8D pdb_00003i8d 10.2210/pdb3i8d/pdb NDB NA0155 ? ? RCSB RCSB054092 ? ? WWPDB D_1000054092 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I8D _pdbx_database_status.recvd_initial_deposition_date 2009-07-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Pallan, P.S.' 2 # _citation.id primary _citation.title 'Pairing geometry of the hydrophobic thymine analogue 2,4-difluorotoluene in duplex DNA as analyzed by X-ray crystallography.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 131 _citation.page_first 12548 _citation.page_last 12549 _citation.year 2009 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19685868 _citation.pdbx_database_id_DOI 10.1021/ja905739j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Egli, M.' 2 ? # _cell.entry_id 3I8D _cell.length_a 96.178 _cell.length_b 66.714 _cell.length_c 77.571 _cell.angle_alpha 90.00 _cell.angle_beta 121.04 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I8D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 15243.206 2 3.1.26.4 D132N RNase-H ? 2 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3'" 3665.398 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 4 water nat water 18.015 231 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; A,C ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DFT)(DC)(DG)(DC)(DG)' CGCGAATNCGCG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 ILE n 1 4 TRP n 1 5 GLU n 1 6 SER n 1 7 LEU n 1 8 SER n 1 9 VAL n 1 10 ASP n 1 11 VAL n 1 12 GLY n 1 13 SER n 1 14 GLN n 1 15 GLY n 1 16 ASN n 1 17 PRO n 1 18 GLY n 1 19 ILE n 1 20 VAL n 1 21 GLU n 1 22 TYR n 1 23 LYS n 1 24 GLY n 1 25 VAL n 1 26 ASP n 1 27 THR n 1 28 LYS n 1 29 THR n 1 30 GLY n 1 31 GLU n 1 32 VAL n 1 33 LEU n 1 34 PHE n 1 35 GLU n 1 36 ARG n 1 37 GLU n 1 38 PRO n 1 39 ILE n 1 40 PRO n 1 41 ILE n 1 42 GLY n 1 43 THR n 1 44 ASN n 1 45 ASN n 1 46 MET n 1 47 GLY n 1 48 GLU n 1 49 PHE n 1 50 LEU n 1 51 ALA n 1 52 ILE n 1 53 VAL n 1 54 HIS n 1 55 GLY n 1 56 LEU n 1 57 ARG n 1 58 TYR n 1 59 LEU n 1 60 LYS n 1 61 GLU n 1 62 ARG n 1 63 ASN n 1 64 SER n 1 65 ARG n 1 66 LYS n 1 67 PRO n 1 68 ILE n 1 69 TYR n 1 70 SER n 1 71 ASN n 1 72 SER n 1 73 GLN n 1 74 THR n 1 75 ALA n 1 76 ILE n 1 77 LYS n 1 78 TRP n 1 79 VAL n 1 80 LYS n 1 81 ASP n 1 82 LYS n 1 83 LYS n 1 84 ALA n 1 85 LYS n 1 86 SER n 1 87 THR n 1 88 LEU n 1 89 VAL n 1 90 ARG n 1 91 ASN n 1 92 GLU n 1 93 GLU n 1 94 THR n 1 95 ALA n 1 96 LEU n 1 97 ILE n 1 98 TRP n 1 99 LYS n 1 100 LEU n 1 101 VAL n 1 102 ASP n 1 103 GLU n 1 104 ALA n 1 105 GLU n 1 106 GLU n 1 107 TRP n 1 108 LEU n 1 109 ASN n 1 110 THR n 1 111 HIS n 1 112 THR n 1 113 TYR n 1 114 GLU n 1 115 THR n 1 116 PRO n 1 117 ILE n 1 118 LEU n 1 119 LYS n 1 120 TRP n 1 121 GLN n 1 122 THR n 1 123 ASP n 1 124 LYS n 1 125 TRP n 1 126 GLY n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ALA n 1 131 ASP n 1 132 TYR n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DT n 2 8 DFT n 2 9 DC n 2 10 DG n 2 11 DC n 2 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BACILLUS HALODURANS, BH0863, RNase-H D132N mutant, rnhA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH1_BACHD Q9KEI9 1 ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; 62 ? 2 PDB 3I8D 3I8D 2 CGCGAATNCGCG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I8D A 1 ? 132 ? Q9KEI9 62 ? 193 ? 62 193 2 1 3I8D C 1 ? 132 ? Q9KEI9 62 ? 193 ? 62 193 3 2 3I8D B 1 ? 12 ? 3I8D 1 ? 12 ? 1 12 4 2 3I8D D 1 ? 12 ? 3I8D 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I8D ASN A 71 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 1 2 3I8D ASN C 71 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DFT 'DNA linking' . "1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE-5'MONOPHOSPHATE" ? 'C12 H15 F2 O6 P' 324.214 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3I8D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;0.1 M NaOAc 3H2O (pH 4.6) and 8% (w/v) PEG 4000 , VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9787 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9787 # _reflns.entry_id 3I8D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.61 _reflns.number_obs 52821 _reflns.number_all 53844 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.61 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2203 _reflns_shell.number_measured_all 2686 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3I8D _refine.ls_number_reflns_obs 50108 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.39 _refine.ls_d_res_high 1.61 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.19929 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19721 _refine.ls_R_factor_R_free 0.23837 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2690 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 16.680 _refine.aniso_B[1][1] -0.58 _refine.aniso_B[2][2] -0.94 _refine.aniso_B[3][3] 0.82 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.69 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'TLS refinement in REFMAC was used' _refine.pdbx_starting_model 'PDB ID 3D0P' _refine.pdbx_method_to_determine_struct 'using MOLREP' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.088 _refine.pdbx_overall_ESU_R_Free 0.094 _refine.overall_SU_ML 0.064 _refine.overall_SU_B 4.099 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2154 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 231 _refine_hist.number_atoms_total 2895 _refine_hist.d_res_high 1.61 _refine_hist.d_res_low 49.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.022 ? 2745 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.536 2.181 ? 3811 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.241 5.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.772 25.306 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.637 15.000 ? 395 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.398 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.185 0.200 ? 416 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.021 ? 1892 'X-RAY DIFFRACTION' ? r_mcbond_it 1.457 1.500 ? 1310 'X-RAY DIFFRACTION' ? r_mcangle_it 2.359 2.000 ? 2127 'X-RAY DIFFRACTION' ? r_scbond_it 3.429 3.000 ? 1435 'X-RAY DIFFRACTION' ? r_scangle_it 4.664 4.500 ? 1682 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.613 _refine_ls_shell.d_res_low 1.655 _refine_ls_shell.number_reflns_R_work 2922 _refine_ls_shell.R_factor_R_work 0.329 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.394 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3I8D _struct.title 'The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I8D _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text ;RNase-H, RNase-H DNA-complex, 2, 4-Difluorotoluene, thymine isostere, hydrophobic base, Endonuclease, Hydrolase, Magnesium, Manganese, Metal-binding, Nuclease, HYDROLASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assembly is generated by the two fold axis rotation of chain A and B by: -x, y, -z. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 43 ? ARG A 62 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 2 SER A 72 ? LYS A 82 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 3 THR A 94 ? HIS A 111 ? THR A 155 HIS A 172 1 ? 18 HELX_P HELX_P4 4 GLN A 121 ? GLY A 126 ? GLN A 182 GLY A 187 1 ? 6 HELX_P HELX_P5 5 THR C 43 ? ARG C 62 ? THR C 104 ARG C 123 1 ? 20 HELX_P HELX_P6 6 SER C 72 ? LYS C 82 ? SER C 133 LYS C 143 1 ? 11 HELX_P HELX_P7 7 ASN C 91 ? GLU C 93 ? ASN C 152 GLU C 154 5 ? 3 HELX_P HELX_P8 8 THR C 94 ? HIS C 111 ? THR C 155 HIS C 172 1 ? 18 HELX_P HELX_P9 9 GLN C 121 ? GLY C 126 ? GLN C 182 GLY C 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 7 "O3'" ? ? ? 1_555 B DFT 8 P ? ? B DT 7 B DFT 8 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale2 covale both ? B DFT 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B DFT 8 B DC 9 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale3 covale both ? D DT 7 "O3'" ? ? ? 1_555 D DFT 8 P ? ? D DT 7 D DFT 8 1_555 ? ? ? ? ? ? ? 1.664 ? ? covale4 covale both ? D DFT 8 "O3'" ? ? ? 1_555 D DC 9 P ? ? D DFT 8 D DC 9 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 1 B DG 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 1 B DG 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 1 B DG 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 2 B DC 11 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 2 B DC 11 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 2 B DC 11 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 3 B DG 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 3 B DG 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 3 B DG 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 4 B DC 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 4 B DC 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 4 B DC 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 6 B DT 7 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 6 B DT 7 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 7 B DA 6 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 7 B DA 6 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 9 B DG 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 9 B DG 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 9 B DG 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 10 B DC 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 10 B DC 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 10 B DC 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 11 B DG 2 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 11 B DG 2 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 11 B DG 2 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 12 B DC 1 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 12 B DC 1 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 12 B DC 1 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 16 A . ? ASN 77 A PRO 17 A ? PRO 78 A 1 10.67 2 ASN 16 C . ? ASN 77 C PRO 17 C ? PRO 78 C 1 2.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 32 ? GLY A 42 ? VAL A 93 GLY A 103 A 2 GLY A 18 ? ASP A 26 ? GLY A 79 ASP A 87 A 3 LEU A 7 ? GLY A 12 ? LEU A 68 GLY A 73 A 4 ILE A 68 ? SER A 70 ? ILE A 129 SER A 131 A 5 ILE A 117 ? LYS A 119 ? ILE A 178 LYS A 180 B 1 VAL C 32 ? GLY C 42 ? VAL C 93 GLY C 103 B 2 GLY C 18 ? ASP C 26 ? GLY C 79 ASP C 87 B 3 LEU C 7 ? SER C 13 ? LEU C 68 SER C 74 B 4 ILE C 68 ? SER C 70 ? ILE C 129 SER C 131 B 5 ILE C 117 ? LYS C 119 ? ILE C 178 LYS C 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 39 ? O ILE A 100 N VAL A 20 ? N VAL A 81 A 2 3 O VAL A 25 ? O VAL A 86 N SER A 8 ? N SER A 69 A 3 4 N LEU A 7 ? N LEU A 68 O TYR A 69 ? O TYR A 130 A 4 5 N ILE A 68 ? N ILE A 129 O LEU A 118 ? O LEU A 179 B 1 2 O ILE C 39 ? O ILE C 100 N VAL C 20 ? N VAL C 81 B 2 3 O VAL C 25 ? O VAL C 86 N SER C 8 ? N SER C 69 B 3 4 N LEU C 7 ? N LEU C 68 O TYR C 69 ? O TYR C 130 B 4 5 N ILE C 68 ? N ILE C 129 O LEU C 118 ? O LEU C 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 601 ? 5 'BINDING SITE FOR RESIDUE GOL A 601' AC2 Software C GOL 602 ? 6 'BINDING SITE FOR RESIDUE GOL C 602' AC3 Software C GOL 603 ? 6 'BINDING SITE FOR RESIDUE GOL C 603' AC4 Software C GOL 604 ? 5 'BINDING SITE FOR RESIDUE GOL C 604' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH I . ? HOH A 25 . ? 1_555 ? 2 AC1 5 TYR A 22 ? TYR A 83 . ? 1_555 ? 3 AC1 5 VAL A 53 ? VAL A 114 . ? 1_555 ? 4 AC1 5 HIS A 54 ? HIS A 115 . ? 1_555 ? 5 AC1 5 ARG A 57 ? ARG A 118 . ? 1_555 ? 6 AC2 6 HIS C 54 ? HIS C 115 . ? 1_555 ? 7 AC2 6 ARG C 57 ? ARG C 118 . ? 1_555 ? 8 AC2 6 ALA C 104 ? ALA C 165 . ? 1_555 ? 9 AC2 6 HOH K . ? HOH C 215 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH C 243 . ? 1_555 ? 11 AC2 6 GOL G . ? GOL C 603 . ? 1_555 ? 12 AC3 6 HIS C 54 ? HIS C 115 . ? 1_555 ? 13 AC3 6 TYR C 58 ? TYR C 119 . ? 1_555 ? 14 AC3 6 GLU C 61 ? GLU C 122 . ? 1_555 ? 15 AC3 6 HOH K . ? HOH C 197 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH C 217 . ? 4_646 ? 17 AC3 6 GOL F . ? GOL C 602 . ? 1_555 ? 18 AC4 5 GLY C 12 ? GLY C 73 . ? 1_555 ? 19 AC4 5 SER C 13 ? SER C 74 . ? 1_555 ? 20 AC4 5 GLU C 21 ? GLU C 82 . ? 1_555 ? 21 AC4 5 TYR C 132 ? TYR C 193 . ? 1_555 ? 22 AC4 5 DG D 12 ? DG D 12 . ? 1_555 ? # _database_PDB_matrix.entry_id 3I8D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3I8D _atom_sites.fract_transf_matrix[1][1] 0.010397 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006258 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014989 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015046 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 62 62 GLU GLU A . n A 1 2 ILE 2 63 63 ILE ILE A . n A 1 3 ILE 3 64 64 ILE ILE A . n A 1 4 TRP 4 65 65 TRP TRP A . n A 1 5 GLU 5 66 66 GLU GLU A . n A 1 6 SER 6 67 67 SER SER A . n A 1 7 LEU 7 68 68 LEU LEU A . n A 1 8 SER 8 69 69 SER SER A . n A 1 9 VAL 9 70 70 VAL VAL A . n A 1 10 ASP 10 71 71 ASP ASP A . n A 1 11 VAL 11 72 72 VAL VAL A . n A 1 12 GLY 12 73 73 GLY GLY A . n A 1 13 SER 13 74 74 SER SER A . n A 1 14 GLN 14 75 75 GLN GLN A . n A 1 15 GLY 15 76 76 GLY GLY A . n A 1 16 ASN 16 77 77 ASN ASN A . n A 1 17 PRO 17 78 78 PRO PRO A . n A 1 18 GLY 18 79 79 GLY GLY A . n A 1 19 ILE 19 80 80 ILE ILE A . n A 1 20 VAL 20 81 81 VAL VAL A . n A 1 21 GLU 21 82 82 GLU GLU A . n A 1 22 TYR 22 83 83 TYR TYR A . n A 1 23 LYS 23 84 84 LYS LYS A . n A 1 24 GLY 24 85 85 GLY GLY A . n A 1 25 VAL 25 86 86 VAL VAL A . n A 1 26 ASP 26 87 87 ASP ASP A . n A 1 27 THR 27 88 88 THR THR A . n A 1 28 LYS 28 89 89 LYS LYS A . n A 1 29 THR 29 90 90 THR THR A . n A 1 30 GLY 30 91 91 GLY GLY A . n A 1 31 GLU 31 92 92 GLU GLU A . n A 1 32 VAL 32 93 93 VAL VAL A . n A 1 33 LEU 33 94 94 LEU LEU A . n A 1 34 PHE 34 95 95 PHE PHE A . n A 1 35 GLU 35 96 96 GLU GLU A . n A 1 36 ARG 36 97 97 ARG ARG A . n A 1 37 GLU 37 98 98 GLU GLU A . n A 1 38 PRO 38 99 99 PRO PRO A . n A 1 39 ILE 39 100 100 ILE ILE A . n A 1 40 PRO 40 101 101 PRO PRO A . n A 1 41 ILE 41 102 102 ILE ILE A . n A 1 42 GLY 42 103 103 GLY GLY A . n A 1 43 THR 43 104 104 THR THR A . n A 1 44 ASN 44 105 105 ASN ASN A . n A 1 45 ASN 45 106 106 ASN ASN A . n A 1 46 MET 46 107 107 MET MET A . n A 1 47 GLY 47 108 108 GLY GLY A . n A 1 48 GLU 48 109 109 GLU GLU A . n A 1 49 PHE 49 110 110 PHE PHE A . n A 1 50 LEU 50 111 111 LEU LEU A . n A 1 51 ALA 51 112 112 ALA ALA A . n A 1 52 ILE 52 113 113 ILE ILE A . n A 1 53 VAL 53 114 114 VAL VAL A . n A 1 54 HIS 54 115 115 HIS HIS A . n A 1 55 GLY 55 116 116 GLY GLY A . n A 1 56 LEU 56 117 117 LEU LEU A . n A 1 57 ARG 57 118 118 ARG ARG A . n A 1 58 TYR 58 119 119 TYR TYR A . n A 1 59 LEU 59 120 120 LEU LEU A . n A 1 60 LYS 60 121 121 LYS LYS A . n A 1 61 GLU 61 122 122 GLU GLU A . n A 1 62 ARG 62 123 123 ARG ARG A . n A 1 63 ASN 63 124 124 ASN ASN A . n A 1 64 SER 64 125 125 SER SER A . n A 1 65 ARG 65 126 126 ARG ARG A . n A 1 66 LYS 66 127 127 LYS LYS A . n A 1 67 PRO 67 128 128 PRO PRO A . n A 1 68 ILE 68 129 129 ILE ILE A . n A 1 69 TYR 69 130 130 TYR TYR A . n A 1 70 SER 70 131 131 SER SER A . n A 1 71 ASN 71 132 132 ASN ASN A . n A 1 72 SER 72 133 133 SER SER A . n A 1 73 GLN 73 134 134 GLN GLN A . n A 1 74 THR 74 135 135 THR THR A . n A 1 75 ALA 75 136 136 ALA ALA A . n A 1 76 ILE 76 137 137 ILE ILE A . n A 1 77 LYS 77 138 138 LYS LYS A . n A 1 78 TRP 78 139 139 TRP TRP A . n A 1 79 VAL 79 140 140 VAL VAL A . n A 1 80 LYS 80 141 141 LYS LYS A . n A 1 81 ASP 81 142 142 ASP ASP A . n A 1 82 LYS 82 143 143 LYS LYS A . n A 1 83 LYS 83 144 144 LYS LYS A . n A 1 84 ALA 84 145 145 ALA ALA A . n A 1 85 LYS 85 146 146 LYS LYS A . n A 1 86 SER 86 147 147 SER SER A . n A 1 87 THR 87 148 148 THR THR A . n A 1 88 LEU 88 149 149 LEU LEU A . n A 1 89 VAL 89 150 150 VAL VAL A . n A 1 90 ARG 90 151 151 ARG ARG A . n A 1 91 ASN 91 152 152 ASN ASN A . n A 1 92 GLU 92 153 153 GLU GLU A . n A 1 93 GLU 93 154 154 GLU GLU A . n A 1 94 THR 94 155 155 THR THR A . n A 1 95 ALA 95 156 156 ALA ALA A . n A 1 96 LEU 96 157 157 LEU LEU A . n A 1 97 ILE 97 158 158 ILE ILE A . n A 1 98 TRP 98 159 159 TRP TRP A . n A 1 99 LYS 99 160 160 LYS LYS A . n A 1 100 LEU 100 161 161 LEU LEU A . n A 1 101 VAL 101 162 162 VAL VAL A . n A 1 102 ASP 102 163 163 ASP ASP A . n A 1 103 GLU 103 164 164 GLU GLU A . n A 1 104 ALA 104 165 165 ALA ALA A . n A 1 105 GLU 105 166 166 GLU GLU A . n A 1 106 GLU 106 167 167 GLU GLU A . n A 1 107 TRP 107 168 168 TRP TRP A . n A 1 108 LEU 108 169 169 LEU LEU A . n A 1 109 ASN 109 170 170 ASN ASN A . n A 1 110 THR 110 171 171 THR THR A . n A 1 111 HIS 111 172 172 HIS HIS A . n A 1 112 THR 112 173 173 THR THR A . n A 1 113 TYR 113 174 174 TYR TYR A . n A 1 114 GLU 114 175 175 GLU GLU A . n A 1 115 THR 115 176 176 THR THR A . n A 1 116 PRO 116 177 177 PRO PRO A . n A 1 117 ILE 117 178 178 ILE ILE A . n A 1 118 LEU 118 179 179 LEU LEU A . n A 1 119 LYS 119 180 180 LYS LYS A . n A 1 120 TRP 120 181 181 TRP TRP A . n A 1 121 GLN 121 182 182 GLN GLN A . n A 1 122 THR 122 183 183 THR THR A . n A 1 123 ASP 123 184 184 ASP ASP A . n A 1 124 LYS 124 185 185 LYS LYS A . n A 1 125 TRP 125 186 186 TRP TRP A . n A 1 126 GLY 126 187 187 GLY GLY A . n A 1 127 GLU 127 188 188 GLU GLU A . n A 1 128 ILE 128 189 189 ILE ILE A . n A 1 129 LYS 129 190 190 LYS LYS A . n A 1 130 ALA 130 191 191 ALA ALA A . n A 1 131 ASP 131 192 192 ASP ASP A . n A 1 132 TYR 132 193 193 TYR TYR A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DFT 8 8 8 DFT DFT B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 1 1 GLU 1 62 62 GLU GLU C . n C 1 2 ILE 2 63 63 ILE ILE C . n C 1 3 ILE 3 64 64 ILE ILE C . n C 1 4 TRP 4 65 65 TRP TRP C . n C 1 5 GLU 5 66 66 GLU GLU C . n C 1 6 SER 6 67 67 SER SER C . n C 1 7 LEU 7 68 68 LEU LEU C . n C 1 8 SER 8 69 69 SER SER C . n C 1 9 VAL 9 70 70 VAL VAL C . n C 1 10 ASP 10 71 71 ASP ASP C . n C 1 11 VAL 11 72 72 VAL VAL C . n C 1 12 GLY 12 73 73 GLY GLY C . n C 1 13 SER 13 74 74 SER SER C . n C 1 14 GLN 14 75 75 GLN GLN C . n C 1 15 GLY 15 76 76 GLY GLY C . n C 1 16 ASN 16 77 77 ASN ASN C . n C 1 17 PRO 17 78 78 PRO PRO C . n C 1 18 GLY 18 79 79 GLY GLY C . n C 1 19 ILE 19 80 80 ILE ILE C . n C 1 20 VAL 20 81 81 VAL VAL C . n C 1 21 GLU 21 82 82 GLU GLU C . n C 1 22 TYR 22 83 83 TYR TYR C . n C 1 23 LYS 23 84 84 LYS LYS C . n C 1 24 GLY 24 85 85 GLY GLY C . n C 1 25 VAL 25 86 86 VAL VAL C . n C 1 26 ASP 26 87 87 ASP ASP C . n C 1 27 THR 27 88 88 THR THR C . n C 1 28 LYS 28 89 89 LYS LYS C . n C 1 29 THR 29 90 90 THR THR C . n C 1 30 GLY 30 91 91 GLY GLY C . n C 1 31 GLU 31 92 92 GLU GLU C . n C 1 32 VAL 32 93 93 VAL VAL C . n C 1 33 LEU 33 94 94 LEU LEU C . n C 1 34 PHE 34 95 95 PHE PHE C . n C 1 35 GLU 35 96 96 GLU GLU C . n C 1 36 ARG 36 97 97 ARG ARG C . n C 1 37 GLU 37 98 98 GLU GLU C . n C 1 38 PRO 38 99 99 PRO PRO C . n C 1 39 ILE 39 100 100 ILE ILE C . n C 1 40 PRO 40 101 101 PRO PRO C . n C 1 41 ILE 41 102 102 ILE ILE C . n C 1 42 GLY 42 103 103 GLY GLY C . n C 1 43 THR 43 104 104 THR THR C . n C 1 44 ASN 44 105 105 ASN ASN C . n C 1 45 ASN 45 106 106 ASN ASN C . n C 1 46 MET 46 107 107 MET MET C . n C 1 47 GLY 47 108 108 GLY GLY C . n C 1 48 GLU 48 109 109 GLU GLU C . n C 1 49 PHE 49 110 110 PHE PHE C . n C 1 50 LEU 50 111 111 LEU LEU C . n C 1 51 ALA 51 112 112 ALA ALA C . n C 1 52 ILE 52 113 113 ILE ILE C . n C 1 53 VAL 53 114 114 VAL VAL C . n C 1 54 HIS 54 115 115 HIS HIS C . n C 1 55 GLY 55 116 116 GLY GLY C . n C 1 56 LEU 56 117 117 LEU LEU C . n C 1 57 ARG 57 118 118 ARG ARG C . n C 1 58 TYR 58 119 119 TYR TYR C . n C 1 59 LEU 59 120 120 LEU LEU C . n C 1 60 LYS 60 121 121 LYS LYS C . n C 1 61 GLU 61 122 122 GLU GLU C . n C 1 62 ARG 62 123 123 ARG ARG C . n C 1 63 ASN 63 124 124 ASN ASN C . n C 1 64 SER 64 125 125 SER SER C . n C 1 65 ARG 65 126 126 ARG ARG C . n C 1 66 LYS 66 127 127 LYS LYS C . n C 1 67 PRO 67 128 128 PRO PRO C . n C 1 68 ILE 68 129 129 ILE ILE C . n C 1 69 TYR 69 130 130 TYR TYR C . n C 1 70 SER 70 131 131 SER SER C . n C 1 71 ASN 71 132 132 ASN ASN C . n C 1 72 SER 72 133 133 SER SER C . n C 1 73 GLN 73 134 134 GLN GLN C . n C 1 74 THR 74 135 135 THR THR C . n C 1 75 ALA 75 136 136 ALA ALA C . n C 1 76 ILE 76 137 137 ILE ILE C . n C 1 77 LYS 77 138 138 LYS LYS C . n C 1 78 TRP 78 139 139 TRP TRP C . n C 1 79 VAL 79 140 140 VAL VAL C . n C 1 80 LYS 80 141 141 LYS LYS C . n C 1 81 ASP 81 142 142 ASP ASP C . n C 1 82 LYS 82 143 143 LYS LYS C . n C 1 83 LYS 83 144 144 LYS LYS C . n C 1 84 ALA 84 145 145 ALA ALA C . n C 1 85 LYS 85 146 146 LYS LYS C . n C 1 86 SER 86 147 147 SER SER C . n C 1 87 THR 87 148 148 THR THR C . n C 1 88 LEU 88 149 149 LEU LEU C . n C 1 89 VAL 89 150 150 VAL VAL C . n C 1 90 ARG 90 151 151 ARG ARG C . n C 1 91 ASN 91 152 152 ASN ASN C . n C 1 92 GLU 92 153 153 GLU GLU C . n C 1 93 GLU 93 154 154 GLU GLU C . n C 1 94 THR 94 155 155 THR THR C . n C 1 95 ALA 95 156 156 ALA ALA C . n C 1 96 LEU 96 157 157 LEU LEU C . n C 1 97 ILE 97 158 158 ILE ILE C . n C 1 98 TRP 98 159 159 TRP TRP C . n C 1 99 LYS 99 160 160 LYS LYS C . n C 1 100 LEU 100 161 161 LEU LEU C . n C 1 101 VAL 101 162 162 VAL VAL C . n C 1 102 ASP 102 163 163 ASP ASP C . n C 1 103 GLU 103 164 164 GLU GLU C . n C 1 104 ALA 104 165 165 ALA ALA C . n C 1 105 GLU 105 166 166 GLU GLU C . n C 1 106 GLU 106 167 167 GLU GLU C . n C 1 107 TRP 107 168 168 TRP TRP C . n C 1 108 LEU 108 169 169 LEU LEU C . n C 1 109 ASN 109 170 170 ASN ASN C . n C 1 110 THR 110 171 171 THR THR C . n C 1 111 HIS 111 172 172 HIS HIS C . n C 1 112 THR 112 173 173 THR THR C . n C 1 113 TYR 113 174 174 TYR TYR C . n C 1 114 GLU 114 175 175 GLU GLU C . n C 1 115 THR 115 176 176 THR THR C . n C 1 116 PRO 116 177 177 PRO PRO C . n C 1 117 ILE 117 178 178 ILE ILE C . n C 1 118 LEU 118 179 179 LEU LEU C . n C 1 119 LYS 119 180 180 LYS LYS C . n C 1 120 TRP 120 181 181 TRP TRP C . n C 1 121 GLN 121 182 182 GLN GLN C . n C 1 122 THR 122 183 183 THR THR C . n C 1 123 ASP 123 184 184 ASP ASP C . n C 1 124 LYS 124 185 185 LYS LYS C . n C 1 125 TRP 125 186 186 TRP TRP C . n C 1 126 GLY 126 187 187 GLY GLY C . n C 1 127 GLU 127 188 188 GLU GLU C . n C 1 128 ILE 128 189 189 ILE ILE C . n C 1 129 LYS 129 190 190 LYS LYS C . n C 1 130 ALA 130 191 191 ALA ALA C . n C 1 131 ASP 131 192 192 ASP ASP C . n C 1 132 TYR 132 193 193 TYR TYR C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DA 5 5 5 DA DA D . n D 2 6 DA 6 6 6 DA DA D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 DFT 8 8 8 DFT DFT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n D 2 12 DG 12 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 601 601 GOL GOL A . F 3 GOL 1 602 602 GOL GOL C . G 3 GOL 1 603 603 GOL GOL C . H 3 GOL 1 604 604 GOL GOL C . I 4 HOH 1 1 1 HOH HOH A . I 4 HOH 2 3 3 HOH HOH A . I 4 HOH 3 5 5 HOH HOH A . I 4 HOH 4 6 6 HOH HOH A . I 4 HOH 5 7 7 HOH HOH A . I 4 HOH 6 9 9 HOH HOH A . I 4 HOH 7 10 10 HOH HOH A . I 4 HOH 8 12 12 HOH HOH A . I 4 HOH 9 13 13 HOH HOH A . I 4 HOH 10 17 17 HOH HOH A . I 4 HOH 11 18 18 HOH HOH A . I 4 HOH 12 19 19 HOH HOH A . I 4 HOH 13 21 21 HOH HOH A . I 4 HOH 14 22 22 HOH HOH A . I 4 HOH 15 23 23 HOH HOH A . I 4 HOH 16 24 24 HOH HOH A . I 4 HOH 17 25 25 HOH HOH A . I 4 HOH 18 26 26 HOH HOH A . I 4 HOH 19 42 42 HOH HOH A . I 4 HOH 20 43 43 HOH HOH A . I 4 HOH 21 44 44 HOH HOH A . I 4 HOH 22 45 45 HOH HOH A . I 4 HOH 23 46 46 HOH HOH A . I 4 HOH 24 47 47 HOH HOH A . I 4 HOH 25 48 48 HOH HOH A . I 4 HOH 26 49 49 HOH HOH A . I 4 HOH 27 50 50 HOH HOH A . I 4 HOH 28 52 52 HOH HOH A . I 4 HOH 29 53 53 HOH HOH A . I 4 HOH 30 194 71 HOH HOH A . I 4 HOH 31 195 72 HOH HOH A . I 4 HOH 32 196 73 HOH HOH A . I 4 HOH 33 197 74 HOH HOH A . I 4 HOH 34 198 75 HOH HOH A . I 4 HOH 35 199 199 HOH HOH A . I 4 HOH 36 200 200 HOH HOH A . I 4 HOH 37 201 201 HOH HOH A . I 4 HOH 38 202 202 HOH HOH A . I 4 HOH 39 203 203 HOH HOH A . I 4 HOH 40 204 204 HOH HOH A . I 4 HOH 41 205 205 HOH HOH A . I 4 HOH 42 206 206 HOH HOH A . I 4 HOH 43 207 207 HOH HOH A . I 4 HOH 44 208 76 HOH HOH A . I 4 HOH 45 209 77 HOH HOH A . I 4 HOH 46 210 78 HOH HOH A . I 4 HOH 47 211 79 HOH HOH A . I 4 HOH 48 212 103 HOH HOH A . I 4 HOH 49 213 104 HOH HOH A . I 4 HOH 50 214 105 HOH HOH A . I 4 HOH 51 215 106 HOH HOH A . I 4 HOH 52 216 108 HOH HOH A . I 4 HOH 53 217 109 HOH HOH A . I 4 HOH 54 218 110 HOH HOH A . I 4 HOH 55 219 123 HOH HOH A . I 4 HOH 56 220 124 HOH HOH A . I 4 HOH 57 221 125 HOH HOH A . I 4 HOH 58 222 126 HOH HOH A . I 4 HOH 59 223 127 HOH HOH A . I 4 HOH 60 224 128 HOH HOH A . I 4 HOH 61 225 129 HOH HOH A . I 4 HOH 62 226 130 HOH HOH A . I 4 HOH 63 227 131 HOH HOH A . I 4 HOH 64 228 132 HOH HOH A . I 4 HOH 65 229 133 HOH HOH A . I 4 HOH 66 230 134 HOH HOH A . I 4 HOH 67 231 135 HOH HOH A . I 4 HOH 68 232 136 HOH HOH A . I 4 HOH 69 233 159 HOH HOH A . I 4 HOH 70 234 160 HOH HOH A . I 4 HOH 71 235 161 HOH HOH A . I 4 HOH 72 236 162 HOH HOH A . I 4 HOH 73 237 163 HOH HOH A . I 4 HOH 74 238 164 HOH HOH A . I 4 HOH 75 239 165 HOH HOH A . I 4 HOH 76 240 166 HOH HOH A . I 4 HOH 77 241 168 HOH HOH A . I 4 HOH 78 242 170 HOH HOH A . J 4 HOH 1 13 2 HOH HOH B . J 4 HOH 2 14 4 HOH HOH B . J 4 HOH 3 15 11 HOH HOH B . J 4 HOH 4 27 27 HOH HOH B . J 4 HOH 5 41 41 HOH HOH B . J 4 HOH 6 51 51 HOH HOH B . J 4 HOH 7 54 54 HOH HOH B . J 4 HOH 8 55 55 HOH HOH B . J 4 HOH 9 56 56 HOH HOH B . J 4 HOH 10 80 80 HOH HOH B . J 4 HOH 11 81 81 HOH HOH B . J 4 HOH 12 82 82 HOH HOH B . J 4 HOH 13 86 86 HOH HOH B . J 4 HOH 14 107 107 HOH HOH B . J 4 HOH 15 111 111 HOH HOH B . J 4 HOH 16 112 112 HOH HOH B . J 4 HOH 17 113 113 HOH HOH B . J 4 HOH 18 114 114 HOH HOH B . J 4 HOH 19 115 115 HOH HOH B . J 4 HOH 20 137 137 HOH HOH B . J 4 HOH 21 138 138 HOH HOH B . J 4 HOH 22 142 142 HOH HOH B . J 4 HOH 23 169 169 HOH HOH B . J 4 HOH 24 172 172 HOH HOH B . J 4 HOH 25 173 173 HOH HOH B . J 4 HOH 26 174 174 HOH HOH B . J 4 HOH 27 175 175 HOH HOH B . J 4 HOH 28 176 176 HOH HOH B . J 4 HOH 29 177 177 HOH HOH B . J 4 HOH 30 178 178 HOH HOH B . J 4 HOH 31 209 209 HOH HOH B . J 4 HOH 32 210 210 HOH HOH B . J 4 HOH 33 211 211 HOH HOH B . J 4 HOH 34 212 212 HOH HOH B . J 4 HOH 35 213 213 HOH HOH B . J 4 HOH 36 214 214 HOH HOH B . J 4 HOH 37 215 215 HOH HOH B . J 4 HOH 38 216 216 HOH HOH B . J 4 HOH 39 217 217 HOH HOH B . J 4 HOH 40 218 218 HOH HOH B . K 4 HOH 1 14 14 HOH HOH C . K 4 HOH 2 16 16 HOH HOH C . K 4 HOH 3 20 20 HOH HOH C . K 4 HOH 4 28 28 HOH HOH C . K 4 HOH 5 29 29 HOH HOH C . K 4 HOH 6 31 31 HOH HOH C . K 4 HOH 7 32 32 HOH HOH C . K 4 HOH 8 33 33 HOH HOH C . K 4 HOH 9 34 34 HOH HOH C . K 4 HOH 10 35 35 HOH HOH C . K 4 HOH 11 36 36 HOH HOH C . K 4 HOH 12 37 37 HOH HOH C . K 4 HOH 13 38 38 HOH HOH C . K 4 HOH 14 39 39 HOH HOH C . K 4 HOH 15 40 40 HOH HOH C . K 4 HOH 16 57 57 HOH HOH C . K 4 HOH 17 58 58 HOH HOH C . K 4 HOH 18 59 59 HOH HOH C . K 4 HOH 19 60 60 HOH HOH C . K 4 HOH 20 61 61 HOH HOH C . K 4 HOH 21 194 194 HOH HOH C . K 4 HOH 22 195 62 HOH HOH C . K 4 HOH 23 196 63 HOH HOH C . K 4 HOH 24 197 64 HOH HOH C . K 4 HOH 25 198 65 HOH HOH C . K 4 HOH 26 199 66 HOH HOH C . K 4 HOH 27 200 67 HOH HOH C . K 4 HOH 28 201 68 HOH HOH C . K 4 HOH 29 202 69 HOH HOH C . K 4 HOH 30 203 83 HOH HOH C . K 4 HOH 31 204 84 HOH HOH C . K 4 HOH 32 205 85 HOH HOH C . K 4 HOH 33 206 87 HOH HOH C . K 4 HOH 34 207 89 HOH HOH C . K 4 HOH 35 208 90 HOH HOH C . K 4 HOH 36 209 91 HOH HOH C . K 4 HOH 37 210 92 HOH HOH C . K 4 HOH 38 211 93 HOH HOH C . K 4 HOH 39 212 94 HOH HOH C . K 4 HOH 40 213 95 HOH HOH C . K 4 HOH 41 214 96 HOH HOH C . K 4 HOH 42 215 97 HOH HOH C . K 4 HOH 43 216 98 HOH HOH C . K 4 HOH 44 217 99 HOH HOH C . K 4 HOH 45 218 102 HOH HOH C . K 4 HOH 46 219 219 HOH HOH C . K 4 HOH 47 220 220 HOH HOH C . K 4 HOH 48 221 116 HOH HOH C . K 4 HOH 49 222 117 HOH HOH C . K 4 HOH 50 223 118 HOH HOH C . K 4 HOH 51 224 119 HOH HOH C . K 4 HOH 52 225 139 HOH HOH C . K 4 HOH 53 226 140 HOH HOH C . K 4 HOH 54 227 141 HOH HOH C . K 4 HOH 55 228 143 HOH HOH C . K 4 HOH 56 229 144 HOH HOH C . K 4 HOH 57 230 145 HOH HOH C . K 4 HOH 58 231 146 HOH HOH C . K 4 HOH 59 232 147 HOH HOH C . K 4 HOH 60 233 148 HOH HOH C . K 4 HOH 61 234 149 HOH HOH C . K 4 HOH 62 235 150 HOH HOH C . K 4 HOH 63 236 151 HOH HOH C . K 4 HOH 64 237 152 HOH HOH C . K 4 HOH 65 238 153 HOH HOH C . K 4 HOH 66 239 154 HOH HOH C . K 4 HOH 67 240 155 HOH HOH C . K 4 HOH 68 241 156 HOH HOH C . K 4 HOH 69 242 157 HOH HOH C . K 4 HOH 70 243 158 HOH HOH C . K 4 HOH 71 244 167 HOH HOH C . K 4 HOH 72 245 171 HOH HOH C . K 4 HOH 73 246 181 HOH HOH C . K 4 HOH 74 247 182 HOH HOH C . K 4 HOH 75 248 183 HOH HOH C . K 4 HOH 76 249 184 HOH HOH C . K 4 HOH 77 250 185 HOH HOH C . K 4 HOH 78 251 186 HOH HOH C . K 4 HOH 79 252 187 HOH HOH C . K 4 HOH 80 253 188 HOH HOH C . K 4 HOH 81 254 189 HOH HOH C . K 4 HOH 82 255 190 HOH HOH C . K 4 HOH 83 256 191 HOH HOH C . K 4 HOH 84 257 192 HOH HOH C . K 4 HOH 85 258 193 HOH HOH C . L 4 HOH 1 13 8 HOH HOH D . L 4 HOH 2 15 15 HOH HOH D . L 4 HOH 3 30 30 HOH HOH D . L 4 HOH 4 70 70 HOH HOH D . L 4 HOH 5 88 88 HOH HOH D . L 4 HOH 6 100 100 HOH HOH D . L 4 HOH 7 101 101 HOH HOH D . L 4 HOH 8 120 120 HOH HOH D . L 4 HOH 9 121 121 HOH HOH D . L 4 HOH 10 122 122 HOH HOH D . L 4 HOH 11 179 179 HOH HOH D . L 4 HOH 12 180 180 HOH HOH D . L 4 HOH 13 195 195 HOH HOH D . L 4 HOH 14 196 196 HOH HOH D . L 4 HOH 15 197 197 HOH HOH D . L 4 HOH 16 198 198 HOH HOH D . L 4 HOH 17 221 221 HOH HOH D . L 4 HOH 18 222 222 HOH HOH D . L 4 HOH 19 223 223 HOH HOH D . L 4 HOH 20 224 224 HOH HOH D . L 4 HOH 21 225 225 HOH HOH D . L 4 HOH 22 226 226 HOH HOH D . L 4 HOH 23 227 227 HOH HOH D . L 4 HOH 24 228 228 HOH HOH D . L 4 HOH 25 229 229 HOH HOH D . L 4 HOH 26 230 230 HOH HOH D . L 4 HOH 27 231 231 HOH HOH D . L 4 HOH 28 232 232 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,E,I,J 2 1,3 C,D,F,G,H,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5840 ? 1 MORE -4 ? 1 'SSA (A^2)' 15820 ? 2 'ABSA (A^2)' 6910 ? 2 MORE -3 ? 2 'SSA (A^2)' 15580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 56.1795715294 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 66.4634167109 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' Advisory 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' Advisory 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.2488 -1.2438 2.6758 0.0566 0.1546 0.0206 -0.0192 -0.0151 0.0429 1.7461 3.7545 2.1269 0.1683 0.4628 -0.1681 0.0484 -0.0966 0.0482 -0.0075 -0.0831 -0.0531 0.2655 -0.0371 0.4430 'X-RAY DIFFRACTION' 2 ? refined 1.1335 8.5868 0.0880 0.1763 0.0441 0.1824 -0.0010 -0.0466 0.0023 3.3974 0.1289 1.3937 0.6534 -1.0793 -0.2565 -0.0347 0.0054 0.0293 0.0206 0.2315 0.0289 0.0096 -0.2044 0.0117 'X-RAY DIFFRACTION' 3 ? refined 49.5375 2.3524 36.1506 0.0310 0.0423 0.0174 0.0056 0.0046 0.0164 1.4675 5.3768 1.0123 0.5774 0.4737 -0.1155 -0.0268 0.0680 -0.0412 0.0692 -0.0111 0.1862 0.1402 -0.0071 0.0844 'X-RAY DIFFRACTION' 4 ? refined 29.4547 12.2035 32.9187 0.1325 0.0680 0.4513 0.0015 -0.0771 0.0069 5.7599 0.1379 0.4733 0.8823 -0.8664 -0.1054 -0.2099 0.0006 0.2093 -0.0588 0.2732 0.0557 -0.0374 0.0369 0.0853 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 62 A 193 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 601 A 601 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 1 A 242 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 1 B 12 ? . . . . ? 'X-RAY DIFFRACTION' 5 2 B 13 B 218 ? . . . . ? 'X-RAY DIFFRACTION' 6 3 C 62 C 193 ? . . . . ? 'X-RAY DIFFRACTION' 7 3 C 602 C 604 ? . . . . ? 'X-RAY DIFFRACTION' 8 3 C 14 C 258 ? . . . . ? 'X-RAY DIFFRACTION' 9 4 D 1 D 12 ? . . . . ? 'X-RAY DIFFRACTION' 10 4 D 13 D 232 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0093 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N A GLN 75 ? ? CA A GLN 75 ? ? 1.580 1.459 0.121 0.020 N 2 1 CA A GLN 75 ? ? CB A GLN 75 ? ? 0.904 1.535 -0.631 0.022 N 3 1 CB A ASN 105 ? ? CG A ASN 105 ? ? 1.810 1.506 0.304 0.023 N 4 1 CG A ASN 105 ? ? OD1 A ASN 105 ? ? 1.402 1.235 0.167 0.022 N 5 1 CB A SER 131 ? ? OG A SER 131 ? ? 1.496 1.418 0.078 0.013 N 6 1 "O3'" B DC 1 ? ? P B DG 2 ? ? 1.521 1.607 -0.086 0.012 Y 7 1 P B DC 3 ? ? "O5'" B DC 3 ? ? 1.666 1.593 0.073 0.010 N 8 1 "O3'" B DC 3 ? ? "C3'" B DC 3 ? ? 1.541 1.435 0.106 0.013 N 9 1 C4 B DC 3 ? ? C5 B DC 3 ? ? 1.475 1.425 0.050 0.008 N 10 1 "C2'" B DG 4 ? ? "C1'" B DG 4 ? ? 1.580 1.519 0.061 0.010 N 11 1 C8 B DG 4 ? ? N9 B DG 4 ? ? 1.421 1.374 0.047 0.007 N 12 1 N9 B DA 5 ? ? C4 B DA 5 ? ? 1.411 1.374 0.037 0.006 N 13 1 "C5'" B DA 6 ? ? "C4'" B DA 6 ? ? 1.556 1.512 0.044 0.007 N 14 1 "O3'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.379 1.419 -0.040 0.006 N 15 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.331 1.374 -0.043 0.007 N 16 1 CG C ASP 71 ? ? OD2 C ASP 71 ? ? 1.393 1.249 0.144 0.023 N 17 1 CA C GLN 75 ? ? CB C GLN 75 ? ? 0.931 1.535 -0.604 0.022 N 18 1 CB C GLU 153 ? ? CG C GLU 153 ? ? 1.633 1.517 0.116 0.019 N 19 1 CZ3 C TRP 181 ? ? CH2 C TRP 181 ? ? 1.494 1.396 0.098 0.016 N 20 1 CB C GLU 188 ? ? CG C GLU 188 ? ? 1.316 1.517 -0.201 0.019 N 21 1 P D DC 3 ? ? "O5'" D DC 3 ? ? 1.686 1.593 0.093 0.010 N 22 1 "O3'" D DC 3 ? ? "C3'" D DC 3 ? ? 1.519 1.435 0.084 0.013 N 23 1 P D DG 4 ? ? "O5'" D DG 4 ? ? 1.498 1.593 -0.095 0.010 N 24 1 "O3'" D DG 4 ? ? "C3'" D DG 4 ? ? 1.360 1.419 -0.059 0.006 N 25 1 P D DA 5 ? ? "O5'" D DA 5 ? ? 1.524 1.593 -0.069 0.010 N 26 1 N3 D DA 5 ? ? C4 D DA 5 ? ? 1.380 1.344 0.036 0.006 N 27 1 C5 D DA 6 ? ? N7 D DA 6 ? ? 1.349 1.388 -0.039 0.006 N 28 1 "O3'" D DC 9 ? ? "C3'" D DC 9 ? ? 1.337 1.419 -0.082 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 97 ? ? CZ A ARG 97 ? ? NH1 A ARG 97 ? ? 116.86 120.30 -3.44 0.50 N 2 1 NE A ARG 123 ? ? CZ A ARG 123 ? ? NH1 A ARG 123 ? ? 123.43 120.30 3.13 0.50 N 3 1 CA A ARG 126 ? ? CB A ARG 126 ? ? CG A ARG 126 ? ? 96.17 113.40 -17.23 2.20 N 4 1 CB A ASP 163 ? ? CG A ASP 163 ? ? OD2 A ASP 163 ? ? 111.89 118.30 -6.41 0.90 N 5 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 110.47 106.80 3.67 0.50 N 6 1 C2 B DC 1 ? ? N3 B DC 1 ? ? C4 B DC 1 ? ? 124.52 119.90 4.62 0.50 N 7 1 C4 B DC 1 ? ? C5 B DC 1 ? ? C6 B DC 1 ? ? 114.26 117.40 -3.14 0.50 N 8 1 "O3'" B DC 1 ? ? P B DG 2 ? ? OP2 B DG 2 ? ? 119.96 110.50 9.46 1.10 Y 9 1 "O5'" B DG 2 ? ? "C5'" B DG 2 ? ? "C4'" B DG 2 ? ? 104.49 109.40 -4.91 0.80 N 10 1 C2 B DG 2 ? ? N3 B DG 2 ? ? C4 B DG 2 ? ? 108.39 111.90 -3.51 0.50 N 11 1 C8 B DG 2 ? ? N9 B DG 2 ? ? C4 B DG 2 ? ? 103.94 106.40 -2.46 0.40 N 12 1 N3 B DG 2 ? ? C4 B DG 2 ? ? N9 B DG 2 ? ? 122.38 126.00 -3.62 0.60 N 13 1 "O5'" B DC 3 ? ? "C5'" B DC 3 ? ? "C4'" B DC 3 ? ? 103.97 109.40 -5.43 0.80 N 14 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 101.26 108.00 -6.74 0.70 N 15 1 "O5'" B DG 4 ? ? "C5'" B DG 4 ? ? "C4'" B DG 4 ? ? 104.28 109.40 -5.12 0.80 N 16 1 C2 B DG 4 ? ? N3 B DG 4 ? ? C4 B DG 4 ? ? 115.42 111.90 3.52 0.50 N 17 1 C5 B DG 4 ? ? C6 B DG 4 ? ? N1 B DG 4 ? ? 115.42 111.50 3.92 0.50 N 18 1 C5 B DA 5 ? ? N7 B DA 5 ? ? C8 B DA 5 ? ? 100.83 103.90 -3.07 0.50 N 19 1 N7 B DA 5 ? ? C8 B DA 5 ? ? N9 B DA 5 ? ? 119.66 113.80 5.86 0.50 N 20 1 C8 B DA 5 ? ? N9 B DA 5 ? ? C4 B DA 5 ? ? 101.95 105.80 -3.85 0.40 N 21 1 N1 B DA 5 ? ? C6 B DA 5 ? ? N6 B DA 5 ? ? 123.58 118.60 4.98 0.60 N 22 1 C8 B DA 6 ? ? N9 B DA 6 ? ? C4 B DA 6 ? ? 103.36 105.80 -2.44 0.40 N 23 1 N1 B DA 6 ? ? C6 B DA 6 ? ? N6 B DA 6 ? ? 122.87 118.60 4.27 0.60 N 24 1 "O5'" B DT 7 ? ? P B DT 7 ? ? OP2 B DT 7 ? ? 99.59 105.70 -6.11 0.90 N 25 1 C5 B DT 7 ? ? C4 B DT 7 ? ? O4 B DT 7 ? ? 120.54 124.90 -4.36 0.70 N 26 1 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DFT 8 ? ? 127.96 119.70 8.26 1.20 Y 27 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 97.91 104.50 -6.59 0.40 N 28 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 103.30 108.00 -4.70 0.70 N 29 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 123.94 119.90 4.04 0.50 N 30 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 118.54 121.90 -3.36 0.40 N 31 1 C5 B DC 9 ? ? C6 B DC 9 ? ? N1 B DC 9 ? ? 124.95 121.00 3.95 0.50 N 32 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 120.44 125.10 -4.66 0.60 N 33 1 N1 B DG 10 ? ? C2 B DG 10 ? ? N3 B DG 10 ? ? 127.76 123.90 3.86 0.60 N 34 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 114.78 111.50 3.28 0.50 N 35 1 N9 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 101.50 105.40 -3.90 0.40 N 36 1 N3 B DG 10 ? ? C4 B DG 10 ? ? N9 B DG 10 ? ? 129.78 126.00 3.78 0.60 N 37 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 113.32 119.90 -6.58 0.70 N 38 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 101.26 104.50 -3.24 0.40 N 39 1 "C1'" B DC 11 ? ? "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 102.60 110.10 -7.50 1.00 N 40 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 130.11 119.70 10.41 1.20 Y 41 1 CB C LEU 94 ? ? CG C LEU 94 ? ? CD1 C LEU 94 ? ? 121.65 111.00 10.65 1.70 N 42 1 NE C ARG 97 ? ? CZ C ARG 97 ? ? NH1 C ARG 97 ? ? 114.80 120.30 -5.50 0.50 N 43 1 NE C ARG 151 ? ? CZ C ARG 151 ? ? NH2 C ARG 151 ? ? 117.07 120.30 -3.23 0.50 N 44 1 CB C GLU 188 ? ? CG C GLU 188 ? ? CD C GLU 188 ? ? 97.83 114.20 -16.37 2.70 N 45 1 OE1 C GLU 188 ? ? CD C GLU 188 ? ? OE2 C GLU 188 ? ? 131.57 123.30 8.27 1.20 N 46 1 CB C ASP 192 ? ? CG C ASP 192 ? ? OD2 C ASP 192 ? ? 112.12 118.30 -6.18 0.90 N 47 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? "C2'" D DC 1 ? ? 110.37 106.80 3.57 0.50 N 48 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? N1 D DC 1 ? ? 111.10 108.30 2.80 0.30 N 49 1 N1 D DC 1 ? ? C2 D DC 1 ? ? O2 D DC 1 ? ? 115.14 118.90 -3.76 0.60 N 50 1 "O4'" D DG 2 ? ? "C4'" D DG 2 ? ? "C3'" D DG 2 ? ? 111.36 106.00 5.36 0.60 N 51 1 "C5'" D DG 2 ? ? "C4'" D DG 2 ? ? "C3'" D DG 2 ? ? 101.46 114.10 -12.64 1.80 N 52 1 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 111.76 108.30 3.46 0.30 N 53 1 C5 D DG 2 ? ? N7 D DG 2 ? ? C8 D DG 2 ? ? 101.15 104.30 -3.15 0.50 N 54 1 N1 D DG 2 ? ? C6 D DG 2 ? ? O6 D DG 2 ? ? 123.80 119.90 3.90 0.60 N 55 1 "C3'" D DG 2 ? ? "O3'" D DG 2 ? ? P D DC 3 ? ? 108.46 119.70 -11.24 1.20 Y 56 1 "O3'" D DG 2 ? ? P D DC 3 ? ? OP2 D DC 3 ? ? 123.89 110.50 13.39 1.10 Y 57 1 "O5'" D DC 3 ? ? "C5'" D DC 3 ? ? "C4'" D DC 3 ? ? 102.50 109.40 -6.90 0.80 N 58 1 "O5'" D DG 4 ? ? "C5'" D DG 4 ? ? "C4'" D DG 4 ? ? 102.85 109.40 -6.55 0.80 N 59 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 111.62 108.30 3.32 0.30 N 60 1 N7 D DG 4 ? ? C8 D DG 4 ? ? N9 D DG 4 ? ? 109.64 113.10 -3.46 0.50 N 61 1 "C3'" D DG 4 ? ? "O3'" D DG 4 ? ? P D DA 5 ? ? 128.45 119.70 8.75 1.20 Y 62 1 "O5'" D DA 5 ? ? P D DA 5 ? ? OP1 D DA 5 ? ? 121.72 110.70 11.02 1.20 N 63 1 "O5'" D DA 5 ? ? P D DA 5 ? ? OP2 D DA 5 ? ? 99.50 105.70 -6.20 0.90 N 64 1 "O4'" D DA 5 ? ? "C1'" D DA 5 ? ? N9 D DA 5 ? ? 102.63 108.00 -5.37 0.70 N 65 1 N1 D DA 5 ? ? C2 D DA 5 ? ? N3 D DA 5 ? ? 126.11 129.30 -3.19 0.50 N 66 1 C5 D DA 6 ? ? C6 D DA 6 ? ? N1 D DA 6 ? ? 112.95 117.70 -4.75 0.50 N 67 1 N1 D DA 6 ? ? C6 D DA 6 ? ? N6 D DA 6 ? ? 124.35 118.60 5.75 0.60 N 68 1 "O5'" D DT 7 ? ? P D DT 7 ? ? OP2 D DT 7 ? ? 99.11 105.70 -6.59 0.90 N 69 1 "C1'" D DT 7 ? ? "O4'" D DT 7 ? ? "C4'" D DT 7 ? ? 103.62 110.10 -6.48 1.00 N 70 1 C4 D DT 7 ? ? C5 D DT 7 ? ? C7 D DT 7 ? ? 123.35 119.00 4.35 0.60 N 71 1 C6 D DT 7 ? ? C5 D DT 7 ? ? C7 D DT 7 ? ? 119.28 122.90 -3.62 0.60 N 72 1 "O4'" D DC 9 ? ? "C4'" D DC 9 ? ? "C3'" D DC 9 ? ? 101.57 104.50 -2.93 0.40 N 73 1 "O4'" D DC 9 ? ? "C1'" D DC 9 ? ? "C2'" D DC 9 ? ? 110.64 106.80 3.84 0.50 N 74 1 N3 D DC 9 ? ? C2 D DC 9 ? ? O2 D DC 9 ? ? 126.24 121.90 4.34 0.70 N 75 1 "O4'" D DC 11 ? ? "C4'" D DC 11 ? ? "C3'" D DC 11 ? ? 100.57 104.50 -3.93 0.40 N 76 1 "C3'" D DC 11 ? ? "O3'" D DC 11 ? ? P D DG 12 ? ? 127.00 119.70 7.30 1.20 Y 77 1 "O4'" D DG 12 ? ? "C4'" D DG 12 ? ? "C3'" D DG 12 ? ? 111.05 106.00 5.05 0.60 N 78 1 "C4'" D DG 12 ? ? "C3'" D DG 12 ? ? "C2'" D DG 12 ? ? 97.50 102.20 -4.70 0.70 N 79 1 C2 D DG 12 ? ? N3 D DG 12 ? ? C4 D DG 12 ? ? 107.43 111.90 -4.47 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 74 ? ? -128.04 -54.46 2 1 GLN A 75 ? ? 64.78 -106.75 3 1 GLN C 75 ? ? -96.28 -91.78 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 126 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.094 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 75 ? CB ? A GLN 14 CB 2 1 Y 0 A GLN 75 ? CG ? A GLN 14 CG 3 1 Y 0 A GLN 75 ? CD ? A GLN 14 CD 4 1 Y 0 A GLN 75 ? OE1 ? A GLN 14 OE1 5 1 Y 0 A GLN 75 ? NE2 ? A GLN 14 NE2 6 1 Y 0 A ARG 126 ? CG ? A ARG 65 CG 7 1 Y 0 A ARG 126 ? CD ? A ARG 65 CD 8 1 Y 0 A ARG 126 ? NE ? A ARG 65 NE 9 1 Y 0 A ARG 126 ? CZ ? A ARG 65 CZ 10 1 Y 0 A ARG 126 ? NH1 ? A ARG 65 NH1 11 1 Y 0 A ARG 126 ? NH2 ? A ARG 65 NH2 12 1 Y 0 C GLN 75 ? CB ? C GLN 14 CB 13 1 Y 0 C GLN 75 ? CG ? C GLN 14 CG 14 1 Y 0 C GLN 75 ? CD ? C GLN 14 CD 15 1 Y 0 C GLN 75 ? OE1 ? C GLN 14 OE1 16 1 Y 0 C GLN 75 ? NE2 ? C GLN 14 NE2 17 1 Y 0 C ARG 126 ? CD ? C ARG 65 CD 18 1 Y 0 C ARG 126 ? NE ? C ARG 65 NE 19 1 Y 0 C ARG 126 ? CZ ? C ARG 65 CZ 20 1 Y 0 C ARG 126 ? NH1 ? C ARG 65 NH1 21 1 Y 0 C ARG 126 ? NH2 ? C ARG 65 NH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DFT P P N N 144 DFT OP1 O N N 145 DFT OP2 O N N 146 DFT OP3 O N N 147 DFT "O5'" O N N 148 DFT "C5'" C N N 149 DFT "C4'" C N R 150 DFT "O4'" O N N 151 DFT "C3'" C N S 152 DFT "O3'" O N N 153 DFT "C2'" C N N 154 DFT "C1'" C N R 155 DFT C2 C Y N 156 DFT C4 C Y N 157 DFT C5 C Y N 158 DFT C5M C N N 159 DFT C6 C Y N 160 DFT F4 F N N 161 DFT C3 C Y N 162 DFT F2 F N N 163 DFT C1 C Y N 164 DFT HOP2 H N N 165 DFT HOP3 H N N 166 DFT "H5'" H N N 167 DFT "H5''" H N N 168 DFT "H4'" H N N 169 DFT "H3'" H N N 170 DFT "HO3'" H N N 171 DFT "H2'" H N N 172 DFT "H2''" H N N 173 DFT "H1'" H N N 174 DFT H71 H N N 175 DFT H72 H N N 176 DFT H73 H N N 177 DFT H6 H N N 178 DFT H3 H N N 179 DG OP3 O N N 180 DG P P N N 181 DG OP1 O N N 182 DG OP2 O N N 183 DG "O5'" O N N 184 DG "C5'" C N N 185 DG "C4'" C N R 186 DG "O4'" O N N 187 DG "C3'" C N S 188 DG "O3'" O N N 189 DG "C2'" C N N 190 DG "C1'" C N R 191 DG N9 N Y N 192 DG C8 C Y N 193 DG N7 N Y N 194 DG C5 C Y N 195 DG C6 C N N 196 DG O6 O N N 197 DG N1 N N N 198 DG C2 C N N 199 DG N2 N N N 200 DG N3 N N N 201 DG C4 C Y N 202 DG HOP3 H N N 203 DG HOP2 H N N 204 DG "H5'" H N N 205 DG "H5''" H N N 206 DG "H4'" H N N 207 DG "H3'" H N N 208 DG "HO3'" H N N 209 DG "H2'" H N N 210 DG "H2''" H N N 211 DG "H1'" H N N 212 DG H8 H N N 213 DG H1 H N N 214 DG H21 H N N 215 DG H22 H N N 216 DT OP3 O N N 217 DT P P N N 218 DT OP1 O N N 219 DT OP2 O N N 220 DT "O5'" O N N 221 DT "C5'" C N N 222 DT "C4'" C N R 223 DT "O4'" O N N 224 DT "C3'" C N S 225 DT "O3'" O N N 226 DT "C2'" C N N 227 DT "C1'" C N R 228 DT N1 N N N 229 DT C2 C N N 230 DT O2 O N N 231 DT N3 N N N 232 DT C4 C N N 233 DT O4 O N N 234 DT C5 C N N 235 DT C7 C N N 236 DT C6 C N N 237 DT HOP3 H N N 238 DT HOP2 H N N 239 DT "H5'" H N N 240 DT "H5''" H N N 241 DT "H4'" H N N 242 DT "H3'" H N N 243 DT "HO3'" H N N 244 DT "H2'" H N N 245 DT "H2''" H N N 246 DT "H1'" H N N 247 DT H3 H N N 248 DT H71 H N N 249 DT H72 H N N 250 DT H73 H N N 251 DT H6 H N N 252 GLN N N N N 253 GLN CA C N S 254 GLN C C N N 255 GLN O O N N 256 GLN CB C N N 257 GLN CG C N N 258 GLN CD C N N 259 GLN OE1 O N N 260 GLN NE2 N N N 261 GLN OXT O N N 262 GLN H H N N 263 GLN H2 H N N 264 GLN HA H N N 265 GLN HB2 H N N 266 GLN HB3 H N N 267 GLN HG2 H N N 268 GLN HG3 H N N 269 GLN HE21 H N N 270 GLN HE22 H N N 271 GLN HXT H N N 272 GLU N N N N 273 GLU CA C N S 274 GLU C C N N 275 GLU O O N N 276 GLU CB C N N 277 GLU CG C N N 278 GLU CD C N N 279 GLU OE1 O N N 280 GLU OE2 O N N 281 GLU OXT O N N 282 GLU H H N N 283 GLU H2 H N N 284 GLU HA H N N 285 GLU HB2 H N N 286 GLU HB3 H N N 287 GLU HG2 H N N 288 GLU HG3 H N N 289 GLU HE2 H N N 290 GLU HXT H N N 291 GLY N N N N 292 GLY CA C N N 293 GLY C C N N 294 GLY O O N N 295 GLY OXT O N N 296 GLY H H N N 297 GLY H2 H N N 298 GLY HA2 H N N 299 GLY HA3 H N N 300 GLY HXT H N N 301 GOL C1 C N N 302 GOL O1 O N N 303 GOL C2 C N N 304 GOL O2 O N N 305 GOL C3 C N N 306 GOL O3 O N N 307 GOL H11 H N N 308 GOL H12 H N N 309 GOL HO1 H N N 310 GOL H2 H N N 311 GOL HO2 H N N 312 GOL H31 H N N 313 GOL H32 H N N 314 GOL HO3 H N N 315 HIS N N N N 316 HIS CA C N S 317 HIS C C N N 318 HIS O O N N 319 HIS CB C N N 320 HIS CG C Y N 321 HIS ND1 N Y N 322 HIS CD2 C Y N 323 HIS CE1 C Y N 324 HIS NE2 N Y N 325 HIS OXT O N N 326 HIS H H N N 327 HIS H2 H N N 328 HIS HA H N N 329 HIS HB2 H N N 330 HIS HB3 H N N 331 HIS HD1 H N N 332 HIS HD2 H N N 333 HIS HE1 H N N 334 HIS HE2 H N N 335 HIS HXT H N N 336 HOH O O N N 337 HOH H1 H N N 338 HOH H2 H N N 339 ILE N N N N 340 ILE CA C N S 341 ILE C C N N 342 ILE O O N N 343 ILE CB C N S 344 ILE CG1 C N N 345 ILE CG2 C N N 346 ILE CD1 C N N 347 ILE OXT O N N 348 ILE H H N N 349 ILE H2 H N N 350 ILE HA H N N 351 ILE HB H N N 352 ILE HG12 H N N 353 ILE HG13 H N N 354 ILE HG21 H N N 355 ILE HG22 H N N 356 ILE HG23 H N N 357 ILE HD11 H N N 358 ILE HD12 H N N 359 ILE HD13 H N N 360 ILE HXT H N N 361 LEU N N N N 362 LEU CA C N S 363 LEU C C N N 364 LEU O O N N 365 LEU CB C N N 366 LEU CG C N N 367 LEU CD1 C N N 368 LEU CD2 C N N 369 LEU OXT O N N 370 LEU H H N N 371 LEU H2 H N N 372 LEU HA H N N 373 LEU HB2 H N N 374 LEU HB3 H N N 375 LEU HG H N N 376 LEU HD11 H N N 377 LEU HD12 H N N 378 LEU HD13 H N N 379 LEU HD21 H N N 380 LEU HD22 H N N 381 LEU HD23 H N N 382 LEU HXT H N N 383 LYS N N N N 384 LYS CA C N S 385 LYS C C N N 386 LYS O O N N 387 LYS CB C N N 388 LYS CG C N N 389 LYS CD C N N 390 LYS CE C N N 391 LYS NZ N N N 392 LYS OXT O N N 393 LYS H H N N 394 LYS H2 H N N 395 LYS HA H N N 396 LYS HB2 H N N 397 LYS HB3 H N N 398 LYS HG2 H N N 399 LYS HG3 H N N 400 LYS HD2 H N N 401 LYS HD3 H N N 402 LYS HE2 H N N 403 LYS HE3 H N N 404 LYS HZ1 H N N 405 LYS HZ2 H N N 406 LYS HZ3 H N N 407 LYS HXT H N N 408 MET N N N N 409 MET CA C N S 410 MET C C N N 411 MET O O N N 412 MET CB C N N 413 MET CG C N N 414 MET SD S N N 415 MET CE C N N 416 MET OXT O N N 417 MET H H N N 418 MET H2 H N N 419 MET HA H N N 420 MET HB2 H N N 421 MET HB3 H N N 422 MET HG2 H N N 423 MET HG3 H N N 424 MET HE1 H N N 425 MET HE2 H N N 426 MET HE3 H N N 427 MET HXT H N N 428 PHE N N N N 429 PHE CA C N S 430 PHE C C N N 431 PHE O O N N 432 PHE CB C N N 433 PHE CG C Y N 434 PHE CD1 C Y N 435 PHE CD2 C Y N 436 PHE CE1 C Y N 437 PHE CE2 C Y N 438 PHE CZ C Y N 439 PHE OXT O N N 440 PHE H H N N 441 PHE H2 H N N 442 PHE HA H N N 443 PHE HB2 H N N 444 PHE HB3 H N N 445 PHE HD1 H N N 446 PHE HD2 H N N 447 PHE HE1 H N N 448 PHE HE2 H N N 449 PHE HZ H N N 450 PHE HXT H N N 451 PRO N N N N 452 PRO CA C N S 453 PRO C C N N 454 PRO O O N N 455 PRO CB C N N 456 PRO CG C N N 457 PRO CD C N N 458 PRO OXT O N N 459 PRO H H N N 460 PRO HA H N N 461 PRO HB2 H N N 462 PRO HB3 H N N 463 PRO HG2 H N N 464 PRO HG3 H N N 465 PRO HD2 H N N 466 PRO HD3 H N N 467 PRO HXT H N N 468 SER N N N N 469 SER CA C N S 470 SER C C N N 471 SER O O N N 472 SER CB C N N 473 SER OG O N N 474 SER OXT O N N 475 SER H H N N 476 SER H2 H N N 477 SER HA H N N 478 SER HB2 H N N 479 SER HB3 H N N 480 SER HG H N N 481 SER HXT H N N 482 THR N N N N 483 THR CA C N S 484 THR C C N N 485 THR O O N N 486 THR CB C N R 487 THR OG1 O N N 488 THR CG2 C N N 489 THR OXT O N N 490 THR H H N N 491 THR H2 H N N 492 THR HA H N N 493 THR HB H N N 494 THR HG1 H N N 495 THR HG21 H N N 496 THR HG22 H N N 497 THR HG23 H N N 498 THR HXT H N N 499 TRP N N N N 500 TRP CA C N S 501 TRP C C N N 502 TRP O O N N 503 TRP CB C N N 504 TRP CG C Y N 505 TRP CD1 C Y N 506 TRP CD2 C Y N 507 TRP NE1 N Y N 508 TRP CE2 C Y N 509 TRP CE3 C Y N 510 TRP CZ2 C Y N 511 TRP CZ3 C Y N 512 TRP CH2 C Y N 513 TRP OXT O N N 514 TRP H H N N 515 TRP H2 H N N 516 TRP HA H N N 517 TRP HB2 H N N 518 TRP HB3 H N N 519 TRP HD1 H N N 520 TRP HE1 H N N 521 TRP HE3 H N N 522 TRP HZ2 H N N 523 TRP HZ3 H N N 524 TRP HH2 H N N 525 TRP HXT H N N 526 TYR N N N N 527 TYR CA C N S 528 TYR C C N N 529 TYR O O N N 530 TYR CB C N N 531 TYR CG C Y N 532 TYR CD1 C Y N 533 TYR CD2 C Y N 534 TYR CE1 C Y N 535 TYR CE2 C Y N 536 TYR CZ C Y N 537 TYR OH O N N 538 TYR OXT O N N 539 TYR H H N N 540 TYR H2 H N N 541 TYR HA H N N 542 TYR HB2 H N N 543 TYR HB3 H N N 544 TYR HD1 H N N 545 TYR HD2 H N N 546 TYR HE1 H N N 547 TYR HE2 H N N 548 TYR HH H N N 549 TYR HXT H N N 550 VAL N N N N 551 VAL CA C N S 552 VAL C C N N 553 VAL O O N N 554 VAL CB C N N 555 VAL CG1 C N N 556 VAL CG2 C N N 557 VAL OXT O N N 558 VAL H H N N 559 VAL H2 H N N 560 VAL HA H N N 561 VAL HB H N N 562 VAL HG11 H N N 563 VAL HG12 H N N 564 VAL HG13 H N N 565 VAL HG21 H N N 566 VAL HG22 H N N 567 VAL HG23 H N N 568 VAL HXT H N N 569 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DFT P OP1 doub N N 143 DFT P OP2 sing N N 144 DFT P OP3 sing N N 145 DFT P "O5'" sing N N 146 DFT OP2 HOP2 sing N N 147 DFT OP3 HOP3 sing N N 148 DFT "O5'" "C5'" sing N N 149 DFT "C5'" "C4'" sing N N 150 DFT "C5'" "H5'" sing N N 151 DFT "C5'" "H5''" sing N N 152 DFT "C4'" "O4'" sing N N 153 DFT "C4'" "C3'" sing N N 154 DFT "C4'" "H4'" sing N N 155 DFT "O4'" "C1'" sing N N 156 DFT "C3'" "O3'" sing N N 157 DFT "C3'" "C2'" sing N N 158 DFT "C3'" "H3'" sing N N 159 DFT "O3'" "HO3'" sing N N 160 DFT "C2'" "C1'" sing N N 161 DFT "C2'" "H2'" sing N N 162 DFT "C2'" "H2''" sing N N 163 DFT "C1'" C1 sing N N 164 DFT "C1'" "H1'" sing N N 165 DFT C2 C3 doub Y N 166 DFT C2 F2 sing N N 167 DFT C2 C1 sing Y N 168 DFT C4 C5 doub Y N 169 DFT C4 F4 sing N N 170 DFT C4 C3 sing Y N 171 DFT C5 C5M sing N N 172 DFT C5 C6 sing Y N 173 DFT C5M H71 sing N N 174 DFT C5M H72 sing N N 175 DFT C5M H73 sing N N 176 DFT C6 C1 doub Y N 177 DFT C6 H6 sing N N 178 DFT C3 H3 sing N N 179 DG OP3 P sing N N 180 DG OP3 HOP3 sing N N 181 DG P OP1 doub N N 182 DG P OP2 sing N N 183 DG P "O5'" sing N N 184 DG OP2 HOP2 sing N N 185 DG "O5'" "C5'" sing N N 186 DG "C5'" "C4'" sing N N 187 DG "C5'" "H5'" sing N N 188 DG "C5'" "H5''" sing N N 189 DG "C4'" "O4'" sing N N 190 DG "C4'" "C3'" sing N N 191 DG "C4'" "H4'" sing N N 192 DG "O4'" "C1'" sing N N 193 DG "C3'" "O3'" sing N N 194 DG "C3'" "C2'" sing N N 195 DG "C3'" "H3'" sing N N 196 DG "O3'" "HO3'" sing N N 197 DG "C2'" "C1'" sing N N 198 DG "C2'" "H2'" sing N N 199 DG "C2'" "H2''" sing N N 200 DG "C1'" N9 sing N N 201 DG "C1'" "H1'" sing N N 202 DG N9 C8 sing Y N 203 DG N9 C4 sing Y N 204 DG C8 N7 doub Y N 205 DG C8 H8 sing N N 206 DG N7 C5 sing Y N 207 DG C5 C6 sing N N 208 DG C5 C4 doub Y N 209 DG C6 O6 doub N N 210 DG C6 N1 sing N N 211 DG N1 C2 sing N N 212 DG N1 H1 sing N N 213 DG C2 N2 sing N N 214 DG C2 N3 doub N N 215 DG N2 H21 sing N N 216 DG N2 H22 sing N N 217 DG N3 C4 sing N N 218 DT OP3 P sing N N 219 DT OP3 HOP3 sing N N 220 DT P OP1 doub N N 221 DT P OP2 sing N N 222 DT P "O5'" sing N N 223 DT OP2 HOP2 sing N N 224 DT "O5'" "C5'" sing N N 225 DT "C5'" "C4'" sing N N 226 DT "C5'" "H5'" sing N N 227 DT "C5'" "H5''" sing N N 228 DT "C4'" "O4'" sing N N 229 DT "C4'" "C3'" sing N N 230 DT "C4'" "H4'" sing N N 231 DT "O4'" "C1'" sing N N 232 DT "C3'" "O3'" sing N N 233 DT "C3'" "C2'" sing N N 234 DT "C3'" "H3'" sing N N 235 DT "O3'" "HO3'" sing N N 236 DT "C2'" "C1'" sing N N 237 DT "C2'" "H2'" sing N N 238 DT "C2'" "H2''" sing N N 239 DT "C1'" N1 sing N N 240 DT "C1'" "H1'" sing N N 241 DT N1 C2 sing N N 242 DT N1 C6 sing N N 243 DT C2 O2 doub N N 244 DT C2 N3 sing N N 245 DT N3 C4 sing N N 246 DT N3 H3 sing N N 247 DT C4 O4 doub N N 248 DT C4 C5 sing N N 249 DT C5 C7 sing N N 250 DT C5 C6 doub N N 251 DT C7 H71 sing N N 252 DT C7 H72 sing N N 253 DT C7 H73 sing N N 254 DT C6 H6 sing N N 255 GLN N CA sing N N 256 GLN N H sing N N 257 GLN N H2 sing N N 258 GLN CA C sing N N 259 GLN CA CB sing N N 260 GLN CA HA sing N N 261 GLN C O doub N N 262 GLN C OXT sing N N 263 GLN CB CG sing N N 264 GLN CB HB2 sing N N 265 GLN CB HB3 sing N N 266 GLN CG CD sing N N 267 GLN CG HG2 sing N N 268 GLN CG HG3 sing N N 269 GLN CD OE1 doub N N 270 GLN CD NE2 sing N N 271 GLN NE2 HE21 sing N N 272 GLN NE2 HE22 sing N N 273 GLN OXT HXT sing N N 274 GLU N CA sing N N 275 GLU N H sing N N 276 GLU N H2 sing N N 277 GLU CA C sing N N 278 GLU CA CB sing N N 279 GLU CA HA sing N N 280 GLU C O doub N N 281 GLU C OXT sing N N 282 GLU CB CG sing N N 283 GLU CB HB2 sing N N 284 GLU CB HB3 sing N N 285 GLU CG CD sing N N 286 GLU CG HG2 sing N N 287 GLU CG HG3 sing N N 288 GLU CD OE1 doub N N 289 GLU CD OE2 sing N N 290 GLU OE2 HE2 sing N N 291 GLU OXT HXT sing N N 292 GLY N CA sing N N 293 GLY N H sing N N 294 GLY N H2 sing N N 295 GLY CA C sing N N 296 GLY CA HA2 sing N N 297 GLY CA HA3 sing N N 298 GLY C O doub N N 299 GLY C OXT sing N N 300 GLY OXT HXT sing N N 301 GOL C1 O1 sing N N 302 GOL C1 C2 sing N N 303 GOL C1 H11 sing N N 304 GOL C1 H12 sing N N 305 GOL O1 HO1 sing N N 306 GOL C2 O2 sing N N 307 GOL C2 C3 sing N N 308 GOL C2 H2 sing N N 309 GOL O2 HO2 sing N N 310 GOL C3 O3 sing N N 311 GOL C3 H31 sing N N 312 GOL C3 H32 sing N N 313 GOL O3 HO3 sing N N 314 HIS N CA sing N N 315 HIS N H sing N N 316 HIS N H2 sing N N 317 HIS CA C sing N N 318 HIS CA CB sing N N 319 HIS CA HA sing N N 320 HIS C O doub N N 321 HIS C OXT sing N N 322 HIS CB CG sing N N 323 HIS CB HB2 sing N N 324 HIS CB HB3 sing N N 325 HIS CG ND1 sing Y N 326 HIS CG CD2 doub Y N 327 HIS ND1 CE1 doub Y N 328 HIS ND1 HD1 sing N N 329 HIS CD2 NE2 sing Y N 330 HIS CD2 HD2 sing N N 331 HIS CE1 NE2 sing Y N 332 HIS CE1 HE1 sing N N 333 HIS NE2 HE2 sing N N 334 HIS OXT HXT sing N N 335 HOH O H1 sing N N 336 HOH O H2 sing N N 337 ILE N CA sing N N 338 ILE N H sing N N 339 ILE N H2 sing N N 340 ILE CA C sing N N 341 ILE CA CB sing N N 342 ILE CA HA sing N N 343 ILE C O doub N N 344 ILE C OXT sing N N 345 ILE CB CG1 sing N N 346 ILE CB CG2 sing N N 347 ILE CB HB sing N N 348 ILE CG1 CD1 sing N N 349 ILE CG1 HG12 sing N N 350 ILE CG1 HG13 sing N N 351 ILE CG2 HG21 sing N N 352 ILE CG2 HG22 sing N N 353 ILE CG2 HG23 sing N N 354 ILE CD1 HD11 sing N N 355 ILE CD1 HD12 sing N N 356 ILE CD1 HD13 sing N N 357 ILE OXT HXT sing N N 358 LEU N CA sing N N 359 LEU N H sing N N 360 LEU N H2 sing N N 361 LEU CA C sing N N 362 LEU CA CB sing N N 363 LEU CA HA sing N N 364 LEU C O doub N N 365 LEU C OXT sing N N 366 LEU CB CG sing N N 367 LEU CB HB2 sing N N 368 LEU CB HB3 sing N N 369 LEU CG CD1 sing N N 370 LEU CG CD2 sing N N 371 LEU CG HG sing N N 372 LEU CD1 HD11 sing N N 373 LEU CD1 HD12 sing N N 374 LEU CD1 HD13 sing N N 375 LEU CD2 HD21 sing N N 376 LEU CD2 HD22 sing N N 377 LEU CD2 HD23 sing N N 378 LEU OXT HXT sing N N 379 LYS N CA sing N N 380 LYS N H sing N N 381 LYS N H2 sing N N 382 LYS CA C sing N N 383 LYS CA CB sing N N 384 LYS CA HA sing N N 385 LYS C O doub N N 386 LYS C OXT sing N N 387 LYS CB CG sing N N 388 LYS CB HB2 sing N N 389 LYS CB HB3 sing N N 390 LYS CG CD sing N N 391 LYS CG HG2 sing N N 392 LYS CG HG3 sing N N 393 LYS CD CE sing N N 394 LYS CD HD2 sing N N 395 LYS CD HD3 sing N N 396 LYS CE NZ sing N N 397 LYS CE HE2 sing N N 398 LYS CE HE3 sing N N 399 LYS NZ HZ1 sing N N 400 LYS NZ HZ2 sing N N 401 LYS NZ HZ3 sing N N 402 LYS OXT HXT sing N N 403 MET N CA sing N N 404 MET N H sing N N 405 MET N H2 sing N N 406 MET CA C sing N N 407 MET CA CB sing N N 408 MET CA HA sing N N 409 MET C O doub N N 410 MET C OXT sing N N 411 MET CB CG sing N N 412 MET CB HB2 sing N N 413 MET CB HB3 sing N N 414 MET CG SD sing N N 415 MET CG HG2 sing N N 416 MET CG HG3 sing N N 417 MET SD CE sing N N 418 MET CE HE1 sing N N 419 MET CE HE2 sing N N 420 MET CE HE3 sing N N 421 MET OXT HXT sing N N 422 PHE N CA sing N N 423 PHE N H sing N N 424 PHE N H2 sing N N 425 PHE CA C sing N N 426 PHE CA CB sing N N 427 PHE CA HA sing N N 428 PHE C O doub N N 429 PHE C OXT sing N N 430 PHE CB CG sing N N 431 PHE CB HB2 sing N N 432 PHE CB HB3 sing N N 433 PHE CG CD1 doub Y N 434 PHE CG CD2 sing Y N 435 PHE CD1 CE1 sing Y N 436 PHE CD1 HD1 sing N N 437 PHE CD2 CE2 doub Y N 438 PHE CD2 HD2 sing N N 439 PHE CE1 CZ doub Y N 440 PHE CE1 HE1 sing N N 441 PHE CE2 CZ sing Y N 442 PHE CE2 HE2 sing N N 443 PHE CZ HZ sing N N 444 PHE OXT HXT sing N N 445 PRO N CA sing N N 446 PRO N CD sing N N 447 PRO N H sing N N 448 PRO CA C sing N N 449 PRO CA CB sing N N 450 PRO CA HA sing N N 451 PRO C O doub N N 452 PRO C OXT sing N N 453 PRO CB CG sing N N 454 PRO CB HB2 sing N N 455 PRO CB HB3 sing N N 456 PRO CG CD sing N N 457 PRO CG HG2 sing N N 458 PRO CG HG3 sing N N 459 PRO CD HD2 sing N N 460 PRO CD HD3 sing N N 461 PRO OXT HXT sing N N 462 SER N CA sing N N 463 SER N H sing N N 464 SER N H2 sing N N 465 SER CA C sing N N 466 SER CA CB sing N N 467 SER CA HA sing N N 468 SER C O doub N N 469 SER C OXT sing N N 470 SER CB OG sing N N 471 SER CB HB2 sing N N 472 SER CB HB3 sing N N 473 SER OG HG sing N N 474 SER OXT HXT sing N N 475 THR N CA sing N N 476 THR N H sing N N 477 THR N H2 sing N N 478 THR CA C sing N N 479 THR CA CB sing N N 480 THR CA HA sing N N 481 THR C O doub N N 482 THR C OXT sing N N 483 THR CB OG1 sing N N 484 THR CB CG2 sing N N 485 THR CB HB sing N N 486 THR OG1 HG1 sing N N 487 THR CG2 HG21 sing N N 488 THR CG2 HG22 sing N N 489 THR CG2 HG23 sing N N 490 THR OXT HXT sing N N 491 TRP N CA sing N N 492 TRP N H sing N N 493 TRP N H2 sing N N 494 TRP CA C sing N N 495 TRP CA CB sing N N 496 TRP CA HA sing N N 497 TRP C O doub N N 498 TRP C OXT sing N N 499 TRP CB CG sing N N 500 TRP CB HB2 sing N N 501 TRP CB HB3 sing N N 502 TRP CG CD1 doub Y N 503 TRP CG CD2 sing Y N 504 TRP CD1 NE1 sing Y N 505 TRP CD1 HD1 sing N N 506 TRP CD2 CE2 doub Y N 507 TRP CD2 CE3 sing Y N 508 TRP NE1 CE2 sing Y N 509 TRP NE1 HE1 sing N N 510 TRP CE2 CZ2 sing Y N 511 TRP CE3 CZ3 doub Y N 512 TRP CE3 HE3 sing N N 513 TRP CZ2 CH2 doub Y N 514 TRP CZ2 HZ2 sing N N 515 TRP CZ3 CH2 sing Y N 516 TRP CZ3 HZ3 sing N N 517 TRP CH2 HH2 sing N N 518 TRP OXT HXT sing N N 519 TYR N CA sing N N 520 TYR N H sing N N 521 TYR N H2 sing N N 522 TYR CA C sing N N 523 TYR CA CB sing N N 524 TYR CA HA sing N N 525 TYR C O doub N N 526 TYR C OXT sing N N 527 TYR CB CG sing N N 528 TYR CB HB2 sing N N 529 TYR CB HB3 sing N N 530 TYR CG CD1 doub Y N 531 TYR CG CD2 sing Y N 532 TYR CD1 CE1 sing Y N 533 TYR CD1 HD1 sing N N 534 TYR CD2 CE2 doub Y N 535 TYR CD2 HD2 sing N N 536 TYR CE1 CZ doub Y N 537 TYR CE1 HE1 sing N N 538 TYR CE2 CZ sing Y N 539 TYR CE2 HE2 sing N N 540 TYR CZ OH sing N N 541 TYR OH HH sing N N 542 TYR OXT HXT sing N N 543 VAL N CA sing N N 544 VAL N H sing N N 545 VAL N H2 sing N N 546 VAL CA C sing N N 547 VAL CA CB sing N N 548 VAL CA HA sing N N 549 VAL C O doub N N 550 VAL C OXT sing N N 551 VAL CB CG1 sing N N 552 VAL CB CG2 sing N N 553 VAL CB HB sing N N 554 VAL CG1 HG11 sing N N 555 VAL CG1 HG12 sing N N 556 VAL CG1 HG13 sing N N 557 VAL CG2 HG21 sing N N 558 VAL CG2 HG22 sing N N 559 VAL CG2 HG23 sing N N 560 VAL OXT HXT sing N N 561 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3I8D 'double helix' 3I8D 'b-form double helix' 3I8D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 B DG 12 2_555 0.169 -0.079 0.271 -25.194 -1.457 -1.672 1 B_DC1:DG12_B B 1 ? B 12 ? 19 1 1 B DG 2 1_555 B DC 11 2_555 -0.263 -0.181 -0.189 -2.613 -1.681 -1.521 2 B_DG2:DC11_B B 2 ? B 11 ? 19 1 1 B DC 3 1_555 B DG 10 2_555 0.138 -0.119 -0.130 1.760 -2.597 -0.875 3 B_DC3:DG10_B B 3 ? B 10 ? 19 1 1 B DG 4 1_555 B DC 9 2_555 -0.223 -0.151 0.182 16.437 -9.893 -1.213 4 B_DG4:DC9_B B 4 ? B 9 ? 19 1 1 B DA 6 1_555 B DT 7 2_555 0.005 -0.247 -0.275 3.723 -26.608 0.989 5 B_DA6:DT7_B B 6 ? B 7 ? 20 1 1 B DT 7 1_555 B DA 6 2_555 -0.005 -0.247 -0.275 -3.723 -26.608 0.989 6 B_DT7:DA6_B B 7 ? B 6 ? 20 1 1 B DC 9 1_555 B DG 4 2_555 0.223 -0.151 0.182 -16.437 -9.893 -1.213 7 B_DC9:DG4_B B 9 ? B 4 ? 19 1 1 B DG 10 1_555 B DC 3 2_555 -0.138 -0.119 -0.130 -1.760 -2.597 -0.875 8 B_DG10:DC3_B B 10 ? B 3 ? 19 1 1 B DC 11 1_555 B DG 2 2_555 0.263 -0.181 -0.189 2.613 -1.681 -1.521 9 B_DC11:DG2_B B 11 ? B 2 ? 19 1 1 B DG 12 1_555 B DC 1 2_555 -0.169 -0.079 0.271 25.194 -1.457 -1.672 10 B_DG12:DC1_B B 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 B DG 12 2_555 B DG 2 1_555 B DC 11 2_555 0.062 0.124 2.938 1.820 13.919 27.247 -2.277 0.211 2.683 27.363 -3.578 30.589 1 BB_DC1DG2:DC11DG12_BB B 1 ? B 12 ? B 2 ? B 11 ? 1 B DG 2 1_555 B DC 11 2_555 B DC 3 1_555 B DG 10 2_555 -0.623 -0.551 3.274 0.622 6.467 30.685 -2.216 1.267 3.084 12.051 -1.159 31.349 2 BB_DG2DC3:DG10DC11_BB B 2 ? B 11 ? B 3 ? B 10 ? 1 B DC 3 1_555 B DG 10 2_555 B DG 4 1_555 B DC 9 2_555 0.238 0.593 3.103 -2.068 13.120 26.327 -1.617 -0.908 3.025 26.749 4.215 29.435 3 BB_DC3DG4:DC9DG10_BB B 3 ? B 10 ? B 4 ? B 9 ? 1 B DG 4 1_555 B DC 9 2_555 B DA 6 1_555 B DT 7 2_555 -1.122 0.044 6.708 -0.880 8.078 76.036 -0.452 0.854 6.696 6.540 0.712 76.404 4 BB_DG4DA6:DT7DC9_BB B 4 ? B 9 ? B 6 ? B 7 ? 1 B DA 6 1_555 B DT 7 2_555 B DT 7 1_555 B DA 6 2_555 0.000 -0.459 3.291 0.000 1.102 33.960 -0.962 0.000 3.275 1.886 0.000 33.977 5 BB_DA6DT7:DA6DT7_BB B 6 ? B 7 ? B 7 ? B 6 ? 1 B DT 7 1_555 B DA 6 2_555 B DC 9 1_555 B DG 4 2_555 1.122 0.044 6.708 0.880 8.078 76.036 -0.452 -0.854 6.696 6.540 -0.713 76.404 6 BB_DT7DC9:DG4DA6_BB B 7 ? B 6 ? B 9 ? B 4 ? 1 B DC 9 1_555 B DG 4 2_555 B DG 10 1_555 B DC 3 2_555 -0.238 0.593 3.103 2.068 13.120 26.327 -1.617 0.908 3.025 26.749 -4.215 29.435 7 BB_DC9DG10:DC3DG4_BB B 9 ? B 4 ? B 10 ? B 3 ? 1 B DG 10 1_555 B DC 3 2_555 B DC 11 1_555 B DG 2 2_555 0.623 -0.551 3.274 -0.622 6.467 30.685 -2.216 -1.267 3.084 12.051 1.159 31.349 8 BB_DG10DC11:DG2DC3_BB B 10 ? B 3 ? B 11 ? B 2 ? 1 B DC 11 1_555 B DG 2 2_555 B DG 12 1_555 B DC 1 2_555 -0.062 0.124 2.938 -1.820 13.919 27.247 -2.277 -0.211 2.683 27.363 3.578 30.589 9 BB_DC11DG12:DC1DG2_BB B 11 ? B 2 ? B 12 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D0P _pdbx_initial_refinement_model.details 'PDB ID 3D0P' #