HEADER HYDROLASE 15-JUL-09 3IB8 TITLE CRYSTAL STRUCTURE OF FULL LENGTH RV0805 IN COMPLEX WITH 5'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RV0805 PHOSPHODIESTERASE PROTEIN; COMPND 5 EC: 3.1.4.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0805; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTC KEYWDS METALLOPHOSPHOESTERASE, ALPHA-BETA FOLD, SWAPPED-DIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PODOBNIK,U.DERMOL REVDAT 5 01-NOV-23 3IB8 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3IB8 1 REMARK REVDAT 3 13-JUL-11 3IB8 1 VERSN REVDAT 2 08-DEC-09 3IB8 1 JRNL REVDAT 1 29-SEP-09 3IB8 0 JRNL AUTH M.PODOBNIK,R.TYAGI,N.MATANGE,U.DERMOL,A.K.GUPTA,R.MATTOO, JRNL AUTH 2 K.SESHADRI,S.S.VISWESWARIAH JRNL TITL A MYCOBACTERIAL CYCLIC AMP PHOSPHODIESTERASE THAT MOONLIGHTS JRNL TITL 2 AS A MODIFIER OF CELL WALL PERMEABILITY JRNL REF J.BIOL.CHEM. V. 284 32846 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801656 JRNL DOI 10.1074/JBC.M109.049635 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.SHENOY,M.CAPUDER,P.DRASKOVIC,D.LAMBA,S.S.VISWESWARIAH, REMARK 1 AUTH 2 M.PODOBNIK REMARK 1 TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE RV0805 CYCLIC REMARK 1 TITL 2 NUCLEOTIDE PHOSPHODIESTERASE FROM MYCOBACTERIUM TUBERCULOSIS REMARK 1 REF J.MOL.BIOL. V. 365 211 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17059828 REMARK 1 DOI 10.1016/J.JMB.2006.10.005 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.R.SHENOY,N.SREENATH,M.PODOBNIK,M.KOVACEVIC, REMARK 1 AUTH 2 S.S.VISWESWARIAH REMARK 1 TITL THE RV0805 GENE FROM MYCOBACTERIUM TUBERCULOSIS ENCODES A REMARK 1 TITL 2 3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE: BIOCHEMICAL AND REMARK 1 TITL 3 MUTATIONAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 44 15695 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16313172 REMARK 1 DOI 10.1021/BI0512391 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2337 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.237 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;33.908 ;22.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;11.205 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;11.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1766 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1064 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1610 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 0.401 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2352 ; 0.640 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 918 ; 1.279 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 834 ; 2.078 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1121 34.9658 -18.1885 REMARK 3 T TENSOR REMARK 3 T11: 0.0316 T22: 0.0352 REMARK 3 T33: 0.0049 T12: 0.0689 REMARK 3 T13: -0.0238 T23: 0.0999 REMARK 3 L TENSOR REMARK 3 L11: 17.3957 L22: 14.8299 REMARK 3 L33: 34.7350 L12: 3.9866 REMARK 3 L13: 4.1525 L23: -3.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 1.1351 S13: 1.1209 REMARK 3 S21: -1.1974 S22: -0.1637 S23: 0.5885 REMARK 3 S31: -0.7779 S32: -1.3844 S33: 0.1841 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6205 23.2453 -17.9726 REMARK 3 T TENSOR REMARK 3 T11: -0.0938 T22: -0.0770 REMARK 3 T33: -0.1418 T12: -0.0006 REMARK 3 T13: -0.0020 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 6.6661 L22: 10.2771 REMARK 3 L33: 3.3707 L12: -4.3500 REMARK 3 L13: -0.0363 L23: -2.8102 REMARK 3 S TENSOR REMARK 3 S11: 0.2483 S12: 0.2285 S13: 0.0448 REMARK 3 S21: -0.3308 S22: 0.0276 S23: 0.4183 REMARK 3 S31: -0.3430 S32: -0.2185 S33: -0.2758 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2676 -1.6452 -2.7418 REMARK 3 T TENSOR REMARK 3 T11: -0.1370 T22: -0.1385 REMARK 3 T33: -0.0970 T12: -0.0040 REMARK 3 T13: -0.0381 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.0511 L22: 4.6106 REMARK 3 L33: 3.2434 L12: -0.6348 REMARK 3 L13: 0.1397 L23: -3.2806 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.0493 S13: -0.2176 REMARK 3 S21: -0.2169 S22: 0.0930 S23: 0.2231 REMARK 3 S31: 0.2358 S32: -0.1090 S33: -0.1043 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4925 -2.6114 -4.8256 REMARK 3 T TENSOR REMARK 3 T11: -0.0729 T22: -0.1292 REMARK 3 T33: -0.0324 T12: -0.0360 REMARK 3 T13: -0.0495 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3201 L22: 7.0642 REMARK 3 L33: 16.9276 L12: -1.0730 REMARK 3 L13: 1.2398 L23: -10.8873 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.0708 S13: -0.3408 REMARK 3 S21: -0.2099 S22: 0.1862 S23: 0.5178 REMARK 3 S31: 0.2384 S32: -0.5276 S33: -0.2186 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1071 5.3550 -15.9412 REMARK 3 T TENSOR REMARK 3 T11: -0.0190 T22: -0.0532 REMARK 3 T33: -0.0518 T12: 0.0173 REMARK 3 T13: -0.0757 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 15.7538 L22: 15.6823 REMARK 3 L33: 19.1530 L12: -0.7988 REMARK 3 L13: 5.3107 L23: -16.7491 REMARK 3 S TENSOR REMARK 3 S11: 0.5091 S12: 0.8644 S13: -0.4104 REMARK 3 S21: -1.2223 S22: -0.1183 S23: 0.4645 REMARK 3 S31: 0.7939 S32: 0.1939 S33: -0.3908 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3794 0.6403 -9.0352 REMARK 3 T TENSOR REMARK 3 T11: -0.0849 T22: -0.1065 REMARK 3 T33: -0.1023 T12: 0.0142 REMARK 3 T13: -0.0072 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.8955 L22: 3.0523 REMARK 3 L33: 1.0624 L12: 0.1007 REMARK 3 L13: -0.1703 L23: -1.3901 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.2229 S13: -0.1504 REMARK 3 S21: -0.4341 S22: -0.0472 S23: -0.0239 REMARK 3 S31: 0.2725 S32: 0.0036 S33: 0.0081 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5297 3.2498 -18.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: -0.0196 REMARK 3 T33: -0.1052 T12: 0.0413 REMARK 3 T13: -0.0342 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.5580 L22: 24.9828 REMARK 3 L33: 11.3820 L12: 1.1264 REMARK 3 L13: 1.7989 L23: -8.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.2695 S12: 0.4696 S13: -0.0945 REMARK 3 S21: -1.2406 S22: -0.0107 S23: 0.5728 REMARK 3 S31: 0.3886 S32: -0.0488 S33: -0.2588 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8759 0.3515 -4.4550 REMARK 3 T TENSOR REMARK 3 T11: -0.1258 T22: -0.1213 REMARK 3 T33: -0.0613 T12: 0.0226 REMARK 3 T13: 0.0052 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.6945 L22: 1.4261 REMARK 3 L33: 3.0421 L12: -0.7838 REMARK 3 L13: -0.8058 L23: 0.3073 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0977 S13: -0.3370 REMARK 3 S21: -0.1794 S22: 0.0117 S23: -0.1049 REMARK 3 S31: 0.2507 S32: 0.2390 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4504 -4.6049 -11.8028 REMARK 3 T TENSOR REMARK 3 T11: -0.0148 T22: 0.0221 REMARK 3 T33: 0.0854 T12: 0.0476 REMARK 3 T13: 0.0196 T23: -0.0993 REMARK 3 L TENSOR REMARK 3 L11: 21.1791 L22: 18.6792 REMARK 3 L33: 15.7302 L12: 0.2666 REMARK 3 L13: -12.8334 L23: 12.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.3087 S12: 0.9739 S13: -1.2225 REMARK 3 S21: -1.0703 S22: -0.7430 S23: 0.5292 REMARK 3 S31: -0.1141 S32: -0.4009 S33: 1.0517 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9399 7.6964 -4.8478 REMARK 3 T TENSOR REMARK 3 T11: -0.1241 T22: -0.0995 REMARK 3 T33: -0.0448 T12: 0.0146 REMARK 3 T13: -0.0092 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.7327 L22: 2.5165 REMARK 3 L33: 1.7349 L12: 0.7411 REMARK 3 L13: -0.6016 L23: -1.7603 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0716 S13: -0.1591 REMARK 3 S21: -0.2054 S22: -0.0503 S23: -0.1725 REMARK 3 S31: 0.3118 S32: 0.2081 S33: 0.0657 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9051 12.1054 1.1525 REMARK 3 T TENSOR REMARK 3 T11: -0.1332 T22: -0.0576 REMARK 3 T33: -0.0304 T12: -0.0155 REMARK 3 T13: -0.0453 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 6.6060 L22: 2.4925 REMARK 3 L33: 5.4260 L12: 3.1426 REMARK 3 L13: -5.9508 L23: -2.5756 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.3658 S13: -0.4800 REMARK 3 S21: 0.0002 S22: -0.2283 S23: -0.2772 REMARK 3 S31: 0.2333 S32: 0.3991 S33: 0.2395 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9802 17.4136 -2.2934 REMARK 3 T TENSOR REMARK 3 T11: -0.1624 T22: -0.1264 REMARK 3 T33: -0.1032 T12: 0.0023 REMARK 3 T13: -0.0160 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.7594 L22: 0.9748 REMARK 3 L33: 2.7920 L12: 0.6784 REMARK 3 L13: -0.8321 L23: -1.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: 0.0311 S13: 0.0119 REMARK 3 S21: 0.0622 S22: 0.0128 S23: -0.0799 REMARK 3 S31: -0.0431 S32: -0.0155 S33: -0.0768 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4379 10.4807 12.7858 REMARK 3 T TENSOR REMARK 3 T11: -0.0750 T22: -0.0973 REMARK 3 T33: -0.1165 T12: 0.0003 REMARK 3 T13: -0.0455 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 7.8545 L22: 5.3027 REMARK 3 L33: 5.6920 L12: 2.4899 REMARK 3 L13: -3.2494 L23: -3.6412 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.5321 S13: -0.2179 REMARK 3 S21: 0.1667 S22: -0.0419 S23: -0.2622 REMARK 3 S31: 0.1410 S32: 0.1686 S33: 0.1697 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8590 18.7835 0.6637 REMARK 3 T TENSOR REMARK 3 T11: -0.1248 T22: -0.1188 REMARK 3 T33: -0.1290 T12: 0.0072 REMARK 3 T13: -0.0242 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.7003 L22: 2.0530 REMARK 3 L33: 1.5425 L12: 0.8585 REMARK 3 L13: -1.0611 L23: -1.4113 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: 0.0064 S13: 0.1193 REMARK 3 S21: 0.2196 S22: -0.0220 S23: -0.1424 REMARK 3 S31: -0.1944 S32: 0.1278 S33: -0.0507 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1485 11.4171 3.9978 REMARK 3 T TENSOR REMARK 3 T11: -0.1390 T22: -0.1486 REMARK 3 T33: -0.1329 T12: -0.0026 REMARK 3 T13: -0.0145 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.8405 L22: 1.7160 REMARK 3 L33: 0.5550 L12: 0.6213 REMARK 3 L13: 0.5175 L23: 0.1056 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.1559 S13: -0.0476 REMARK 3 S21: 0.1449 S22: -0.0286 S23: 0.0638 REMARK 3 S31: 0.0287 S32: -0.0259 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6403 25.8535 -13.2879 REMARK 3 T TENSOR REMARK 3 T11: -0.1223 T22: -0.1246 REMARK 3 T33: -0.1430 T12: 0.0099 REMARK 3 T13: 0.0043 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 13.0691 L22: 9.3378 REMARK 3 L33: 11.7074 L12: -0.6632 REMARK 3 L13: 2.1128 L23: 1.2180 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.3525 S13: 0.3437 REMARK 3 S21: -0.0602 S22: -0.1538 S23: 0.1196 REMARK 3 S31: -0.3989 S32: -0.0816 S33: -0.0143 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5673 15.8650 -6.8536 REMARK 3 T TENSOR REMARK 3 T11: -0.1379 T22: -0.1416 REMARK 3 T33: -0.1503 T12: 0.0018 REMARK 3 T13: -0.0228 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 5.6649 L22: 3.0592 REMARK 3 L33: 1.0724 L12: 2.3808 REMARK 3 L13: -0.9666 L23: -0.6930 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0948 S13: -0.1495 REMARK 3 S21: -0.2071 S22: 0.0489 S23: 0.0491 REMARK 3 S31: 0.1299 S32: -0.0221 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4931 16.5583 -15.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0100 REMARK 3 T33: 0.0005 T12: -0.0374 REMARK 3 T13: -0.1214 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.2693 L22: 4.5452 REMARK 3 L33: 30.2750 L12: 4.3686 REMARK 3 L13: -9.6874 L23: -11.4241 REMARK 3 S TENSOR REMARK 3 S11: -0.2733 S12: 0.7677 S13: -0.2314 REMARK 3 S21: -0.7408 S22: 0.3840 S23: 0.2416 REMARK 3 S31: 0.2927 S32: -0.9877 S33: -0.1107 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2400 25.3557 -23.1397 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.1010 REMARK 3 T33: -0.0419 T12: -0.0265 REMARK 3 T13: -0.1882 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 28.2095 L22: 86.5551 REMARK 3 L33: 12.0184 L12: 16.5953 REMARK 3 L13: -6.8636 L23: -4.1070 REMARK 3 S TENSOR REMARK 3 S11: -0.8414 S12: 2.2007 S13: 1.4961 REMARK 3 S21: -2.8451 S22: 0.8769 S23: 1.7086 REMARK 3 S31: 0.4488 S32: -0.9157 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4121 29.0604 -22.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.2739 REMARK 3 T33: -0.0146 T12: 0.0295 REMARK 3 T13: -0.0571 T23: 0.1510 REMARK 3 L TENSOR REMARK 3 L11: 45.4259 L22: 12.9546 REMARK 3 L33: 0.7069 L12: -20.9001 REMARK 3 L13: 4.2241 L23: -0.9195 REMARK 3 S TENSOR REMARK 3 S11: 0.7959 S12: 1.6129 S13: 0.1206 REMARK 3 S21: -1.1791 S22: -0.6510 S23: 0.2202 REMARK 3 S31: -0.1867 S32: 0.4039 S33: -0.1449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9864 REMARK 200 MONOCHROMATOR : FIXED EXIT DOUBLE CRYSTAL (SI), REMARK 200 HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, AMM. ACETATE, MPD, AMP, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.40050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.20025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.60075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.20025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.60075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.40050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 ILE A -7 REMARK 465 ARG A -6 REMARK 465 ASN A -5 REMARK 465 SER A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 TYR A -1 REMARK 465 VAL A 0 REMARK 465 GLU A 1 REMARK 465 HIS A 2 REMARK 465 ARG A 3 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 PHE A 301 REMARK 465 LYS A 302 REMARK 465 HIS A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 MET A 306 REMARK 465 VAL A 307 REMARK 465 LEU A 308 REMARK 465 THR A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 ALA A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 SER A 315 REMARK 465 PRO A 316 REMARK 465 VAL A 317 REMARK 465 ASP A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 48.74 -85.99 REMARK 500 ASP A 125 -120.18 50.66 REMARK 500 HIS A 169 -63.66 -91.43 REMARK 500 HIS A 207 -38.81 77.44 REMARK 500 ALA A 214 -167.75 -161.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 444 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 HIS A 23 NE2 108.6 REMARK 620 3 ASP A 63 OD2 89.0 93.3 REMARK 620 4 HIS A 209 NE2 86.8 94.7 171.8 REMARK 620 5 HOH A 565 O 87.1 162.8 79.4 93.4 REMARK 620 6 AMP A 666 O3P 165.7 85.5 87.5 94.9 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 555 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 ASN A 97 OD1 102.0 REMARK 620 3 HOH A 565 O 73.9 166.0 REMARK 620 4 AMP A 666 O1P 90.6 90.8 76.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 666 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 778 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 779 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HY1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV0805 CATALYTIC CORE REMARK 900 RELATED ID: 2HYP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV0805 CATALYTIC CORE D66A MUTANT REMARK 900 RELATED ID: 2HYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV0805 CATALYTIC CORE N97A MUTANT REMARK 900 RELATED ID: 3IB7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL LENGTH RV0805 DBREF 3IB8 A 2 318 UNP O06629 O06629_MYCTU 2 318 SEQADV 3IB8 GLY A -11 UNP O06629 EXPRESSION TAG SEQADV 3IB8 ALA A -10 UNP O06629 EXPRESSION TAG SEQADV 3IB8 MET A -9 UNP O06629 EXPRESSION TAG SEQADV 3IB8 GLY A -8 UNP O06629 EXPRESSION TAG SEQADV 3IB8 ILE A -7 UNP O06629 EXPRESSION TAG SEQADV 3IB8 ARG A -6 UNP O06629 EXPRESSION TAG SEQADV 3IB8 ASN A -5 UNP O06629 EXPRESSION TAG SEQADV 3IB8 SER A -4 UNP O06629 EXPRESSION TAG SEQADV 3IB8 LYS A -3 UNP O06629 EXPRESSION TAG SEQADV 3IB8 ALA A -2 UNP O06629 EXPRESSION TAG SEQADV 3IB8 TYR A -1 UNP O06629 EXPRESSION TAG SEQADV 3IB8 VAL A 0 UNP O06629 EXPRESSION TAG SEQADV 3IB8 GLU A 1 UNP O06629 EXPRESSION TAG SEQRES 1 A 330 GLY ALA MET GLY ILE ARG ASN SER LYS ALA TYR VAL GLU SEQRES 2 A 330 HIS ARG LEU ARG ALA ALA GLU HIS PRO ARG PRO ASP TYR SEQRES 3 A 330 VAL LEU LEU HIS ILE SER ASP THR HIS LEU ILE GLY GLY SEQRES 4 A 330 ASP ARG ARG LEU TYR GLY ALA VAL ASP ALA ASP ASP ARG SEQRES 5 A 330 LEU GLY GLU LEU LEU GLU GLN LEU ASN GLN SER GLY LEU SEQRES 6 A 330 ARG PRO ASP ALA ILE VAL PHE THR GLY ASP LEU ALA ASP SEQRES 7 A 330 LYS GLY GLU PRO ALA ALA TYR ARG LYS LEU ARG GLY LEU SEQRES 8 A 330 VAL GLU PRO PHE ALA ALA GLN LEU GLY ALA GLU LEU VAL SEQRES 9 A 330 TRP VAL MET GLY ASN HIS ASP ASP ARG ALA GLU LEU ARG SEQRES 10 A 330 LYS PHE LEU LEU ASP GLU ALA PRO SER MET ALA PRO LEU SEQRES 11 A 330 ASP ARG VAL CYS MET ILE ASP GLY LEU ARG ILE ILE VAL SEQRES 12 A 330 LEU ASP THR SER VAL PRO GLY HIS HIS HIS GLY GLU ILE SEQRES 13 A 330 ARG ALA SER GLN LEU GLY TRP LEU ALA GLU GLU LEU ALA SEQRES 14 A 330 THR PRO ALA PRO ASP GLY THR ILE LEU ALA LEU HIS HIS SEQRES 15 A 330 PRO PRO ILE PRO SER VAL LEU ASP MET ALA VAL THR VAL SEQRES 16 A 330 GLU LEU ARG ASP GLN ALA ALA LEU GLY ARG VAL LEU ARG SEQRES 17 A 330 GLY THR ASP VAL ARG ALA ILE LEU ALA GLY HIS LEU HIS SEQRES 18 A 330 TYR SER THR ASN ALA THR PHE VAL GLY ILE PRO VAL SER SEQRES 19 A 330 VAL ALA SER ALA THR CYS TYR THR GLN ASP LEU THR VAL SEQRES 20 A 330 ALA ALA GLY GLY THR ARG GLY ARG ASP GLY ALA GLN GLY SEQRES 21 A 330 CYS ASN LEU VAL HIS VAL TYR PRO ASP THR VAL VAL HIS SEQRES 22 A 330 SER VAL ILE PRO LEU GLY GLY GLY GLU THR VAL GLY THR SEQRES 23 A 330 PHE VAL SER PRO GLY GLN ALA ARG ARG LYS ILE ALA GLU SEQRES 24 A 330 SER GLY ILE PHE ILE GLU PRO SER ARG ARG ASP SER LEU SEQRES 25 A 330 PHE LYS HIS PRO PRO MET VAL LEU THR SER SER ALA PRO SEQRES 26 A 330 ARG SER PRO VAL ASP HET FE A 444 1 HET MN A 555 1 HET AMP A 666 23 HET BTB A 777 14 HET MPD A 778 8 HET MPD A 779 8 HET MPD A 780 8 HET ACT A1000 4 HETNAM FE FE (III) ION HETNAM MN MANGANESE (II) ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION HETSYN BTB BIS-TRIS BUFFER FORMUL 2 FE FE 3+ FORMUL 3 MN MN 2+ FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 5 BTB C8 H19 N O5 FORMUL 6 MPD 3(C6 H14 O2) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *247(H2 O) HELIX 1 1 ARG A 30 ALA A 34 5 5 HELIX 2 2 ASP A 36 GLY A 52 1 17 HELIX 3 3 GLU A 69 GLY A 88 1 20 HELIX 4 4 ASP A 100 ASP A 110 1 11 HELIX 5 5 ARG A 145 LEU A 156 1 12 HELIX 6 6 LEU A 177 GLU A 184 5 8 HELIX 7 7 ASP A 187 ARG A 196 1 10 HELIX 8 8 SER A 277 SER A 288 1 12 SHEET 1 A 2 ARG A 5 ALA A 6 0 SHEET 2 A 2 ILE A 290 PHE A 291 1 O PHE A 291 N ARG A 5 SHEET 1 B 5 GLU A 90 TRP A 93 0 SHEET 2 B 5 ALA A 57 PHE A 60 1 N PHE A 60 O VAL A 92 SHEET 3 B 5 TYR A 14 ILE A 19 1 N LEU A 17 O VAL A 59 SHEET 4 B 5 GLY A 248 VAL A 254 -1 O VAL A 252 N LEU A 16 SHEET 5 B 5 VAL A 259 PRO A 265 -1 O ILE A 264 N CYS A 249 SHEET 1 C 6 ARG A 120 ILE A 124 0 SHEET 2 C 6 LEU A 127 VAL A 131 -1 O LEU A 127 N ILE A 124 SHEET 3 C 6 THR A 164 ALA A 167 1 O ALA A 167 N ILE A 130 SHEET 4 C 6 VAL A 200 ALA A 205 1 O LEU A 204 N LEU A 166 SHEET 5 C 6 ILE A 219 VAL A 223 1 O SER A 222 N ILE A 203 SHEET 6 C 6 THR A 212 PHE A 216 -1 N ALA A 214 O VAL A 221 SHEET 1 D 2 THR A 230 GLN A 231 0 SHEET 2 D 2 GLY A 242 ARG A 243 -1 O ARG A 243 N THR A 230 LINK OD1 ASP A 21 FE FE A 444 1555 1555 2.09 LINK NE2 HIS A 23 FE FE A 444 1555 1555 2.22 LINK OD2 ASP A 63 FE FE A 444 1555 1555 2.25 LINK OD2 ASP A 63 MN MN A 555 1555 1555 2.25 LINK OD1 ASN A 97 MN MN A 555 1555 1555 2.18 LINK NE2 HIS A 209 FE FE A 444 1555 1555 2.20 LINK FE FE A 444 O HOH A 565 1555 1555 2.02 LINK FE FE A 444 O3P AMP A 666 1555 1555 2.22 LINK MN MN A 555 O HOH A 565 1555 1555 2.29 LINK MN MN A 555 O1P AMP A 666 1555 1555 2.17 SITE 1 AC1 7 ASP A 21 HIS A 23 ASP A 63 HIS A 209 SITE 2 AC1 7 MN A 555 HOH A 565 AMP A 666 SITE 1 AC2 7 ASP A 63 ASN A 97 HIS A 169 HIS A 207 SITE 2 AC2 7 FE A 444 HOH A 565 AMP A 666 SITE 1 AC3 22 HIS A 23 ASP A 63 ASN A 97 HIS A 98 SITE 2 AC3 22 ALA A 157 MET A 179 ALA A 180 THR A 182 SITE 3 AC3 22 HIS A 207 LEU A 208 HIS A 209 HOH A 359 SITE 4 AC3 22 FE A 444 HOH A 474 HOH A 485 HOH A 492 SITE 5 AC3 22 HOH A 495 HOH A 499 HOH A 500 HOH A 549 SITE 6 AC3 22 MN A 555 HOH A 565 SITE 1 AC4 13 ASP A 66 LYS A 67 ASN A 97 HIS A 98 SITE 2 AC4 13 ASP A 99 VAL A 121 PRO A 137 GLY A 138 SITE 3 AC4 13 HIS A 140 GLU A 155 HOH A 387 HOH A 393 SITE 4 AC4 13 HOH A 512 SITE 1 AC5 4 VAL A 92 TRP A 93 ARG A 120 CYS A 122 SITE 1 AC6 4 ASP A 119 SER A 147 TRP A 151 HOH A 383 SITE 1 AC7 3 ARG A 77 GLU A 81 LEU A 109 SITE 1 AC8 2 ALA A 160 HOH A 481 CRYST1 100.400 100.400 80.801 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012376 0.00000