data_3IBQ # _entry.id 3IBQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IBQ pdb_00003ibq 10.2210/pdb3ibq/pdb RCSB RCSB054213 ? ? WWPDB D_1000054213 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11208c _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IBQ _pdbx_database_status.recvd_initial_deposition_date 2009-07-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bagaria, A.' 1 ? 'Kumaran, D.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'Swaminathan, S.' 4 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 5 ? # _citation.id primary _citation.title 'Crystal structure of pyridoxal kinase from Lactobacillus plantarum in complex with ATP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bagaria, A.' 1 ? primary 'Kumaran, D.' 2 ? primary 'Burley, S.K.' 3 0000-0002-2487-9713 primary 'Swaminathan, S.' 4 ? # _cell.entry_id 3IBQ _cell.length_a 64.357 _cell.length_b 69.576 _cell.length_c 132.369 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IBQ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pyridoxal kinase' 30412.607 1 2.7.1.35 ? ? ? 2 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLST(MSE)LVAEDLSAVGGISLSSALPVLTA(MSE)QYDVAALPTSLLSTHTSGYGTPAVVDLSTWLPQVFAHW TRAQLHFDQALIGYVGSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAA(MSE)RQLIQQADVILPNTTE AALLTGAPYQVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGL LGRGYPLAPTLARANQWLN(MSE)AVAETIAQNRTDDRQGVALGDLLQAILALNEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSTMLVAEDLSAVGGISLSSALPVLTAMQYDVAALPTSLLSTHTSGYGTPAVVDLSTWLPQVFAHWTRAQLHFDQALI GYVGSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTGAPYQVTPDLE VILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLLGRGYPLAPTLARANQ WLNMAVAETIAQNRTDDRQGVALGDLLQAILALNEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11208c # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 THR n 1 6 MSE n 1 7 LEU n 1 8 VAL n 1 9 ALA n 1 10 GLU n 1 11 ASP n 1 12 LEU n 1 13 SER n 1 14 ALA n 1 15 VAL n 1 16 GLY n 1 17 GLY n 1 18 ILE n 1 19 SER n 1 20 LEU n 1 21 SER n 1 22 SER n 1 23 ALA n 1 24 LEU n 1 25 PRO n 1 26 VAL n 1 27 LEU n 1 28 THR n 1 29 ALA n 1 30 MSE n 1 31 GLN n 1 32 TYR n 1 33 ASP n 1 34 VAL n 1 35 ALA n 1 36 ALA n 1 37 LEU n 1 38 PRO n 1 39 THR n 1 40 SER n 1 41 LEU n 1 42 LEU n 1 43 SER n 1 44 THR n 1 45 HIS n 1 46 THR n 1 47 SER n 1 48 GLY n 1 49 TYR n 1 50 GLY n 1 51 THR n 1 52 PRO n 1 53 ALA n 1 54 VAL n 1 55 VAL n 1 56 ASP n 1 57 LEU n 1 58 SER n 1 59 THR n 1 60 TRP n 1 61 LEU n 1 62 PRO n 1 63 GLN n 1 64 VAL n 1 65 PHE n 1 66 ALA n 1 67 HIS n 1 68 TRP n 1 69 THR n 1 70 ARG n 1 71 ALA n 1 72 GLN n 1 73 LEU n 1 74 HIS n 1 75 PHE n 1 76 ASP n 1 77 GLN n 1 78 ALA n 1 79 LEU n 1 80 ILE n 1 81 GLY n 1 82 TYR n 1 83 VAL n 1 84 GLY n 1 85 SER n 1 86 VAL n 1 87 ALA n 1 88 LEU n 1 89 CYS n 1 90 GLN n 1 91 GLN n 1 92 ILE n 1 93 THR n 1 94 THR n 1 95 TYR n 1 96 LEU n 1 97 GLU n 1 98 GLN n 1 99 GLN n 1 100 THR n 1 101 LEU n 1 102 SER n 1 103 LEU n 1 104 LEU n 1 105 VAL n 1 106 VAL n 1 107 ASP n 1 108 PRO n 1 109 VAL n 1 110 LEU n 1 111 GLY n 1 112 ASP n 1 113 LEU n 1 114 GLY n 1 115 GLN n 1 116 LEU n 1 117 TYR n 1 118 GLN n 1 119 GLY n 1 120 PHE n 1 121 ASP n 1 122 GLN n 1 123 ASP n 1 124 TYR n 1 125 VAL n 1 126 ALA n 1 127 ALA n 1 128 MSE n 1 129 ARG n 1 130 GLN n 1 131 LEU n 1 132 ILE n 1 133 GLN n 1 134 GLN n 1 135 ALA n 1 136 ASP n 1 137 VAL n 1 138 ILE n 1 139 LEU n 1 140 PRO n 1 141 ASN n 1 142 THR n 1 143 THR n 1 144 GLU n 1 145 ALA n 1 146 ALA n 1 147 LEU n 1 148 LEU n 1 149 THR n 1 150 GLY n 1 151 ALA n 1 152 PRO n 1 153 TYR n 1 154 GLN n 1 155 VAL n 1 156 THR n 1 157 PRO n 1 158 ASP n 1 159 LEU n 1 160 GLU n 1 161 VAL n 1 162 ILE n 1 163 LEU n 1 164 PRO n 1 165 ALA n 1 166 LEU n 1 167 GLN n 1 168 ALA n 1 169 GLN n 1 170 LEU n 1 171 LYS n 1 172 THR n 1 173 GLY n 1 174 ALA n 1 175 HIS n 1 176 ALA n 1 177 VAL n 1 178 ILE n 1 179 THR n 1 180 ASP n 1 181 VAL n 1 182 GLN n 1 183 ARG n 1 184 ALA n 1 185 ASP n 1 186 GLN n 1 187 ILE n 1 188 GLY n 1 189 CYS n 1 190 ALA n 1 191 TRP n 1 192 LEU n 1 193 ASP n 1 194 GLU n 1 195 ALA n 1 196 GLY n 1 197 HIS n 1 198 VAL n 1 199 GLN n 1 200 TYR n 1 201 CYS n 1 202 GLY n 1 203 ALA n 1 204 ARG n 1 205 ARG n 1 206 LEU n 1 207 PRO n 1 208 GLY n 1 209 HIS n 1 210 TYR n 1 211 ASN n 1 212 GLY n 1 213 THR n 1 214 GLY n 1 215 ASP n 1 216 THR n 1 217 LEU n 1 218 ALA n 1 219 ALA n 1 220 VAL n 1 221 ILE n 1 222 ALA n 1 223 GLY n 1 224 LEU n 1 225 LEU n 1 226 GLY n 1 227 ARG n 1 228 GLY n 1 229 TYR n 1 230 PRO n 1 231 LEU n 1 232 ALA n 1 233 PRO n 1 234 THR n 1 235 LEU n 1 236 ALA n 1 237 ARG n 1 238 ALA n 1 239 ASN n 1 240 GLN n 1 241 TRP n 1 242 LEU n 1 243 ASN n 1 244 MSE n 1 245 ALA n 1 246 VAL n 1 247 ALA n 1 248 GLU n 1 249 THR n 1 250 ILE n 1 251 ALA n 1 252 GLN n 1 253 ASN n 1 254 ARG n 1 255 THR n 1 256 ASP n 1 257 ASP n 1 258 ARG n 1 259 GLN n 1 260 GLY n 1 261 VAL n 1 262 ALA n 1 263 LEU n 1 264 GLY n 1 265 ASP n 1 266 LEU n 1 267 LEU n 1 268 GLN n 1 269 ALA n 1 270 ILE n 1 271 LEU n 1 272 ALA n 1 273 LEU n 1 274 ASN n 1 275 GLU n 1 276 GLY n 1 277 HIS n 1 278 HIS n 1 279 HIS n 1 280 HIS n 1 281 HIS n 1 282 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pdx, lp_0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain WCFS1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus plantarum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88YB5_LACPL _struct_ref.pdbx_db_accession Q88YB5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STMLVAEDLSAVGGISLSSALPVLTAMQYDVAALPTSLLSTHTSGYGTPAVVDLSTWLPQVFAHWTRAQLHFDQALIGYV GSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTGAPYQVTPDLEVIL PALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLLGRGYPLAPTLARANQWLN MAVAETIAQNRTDDRQGVALGDLLQAILALN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IBQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 274 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88YB5 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 272 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 272 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IBQ MSE A 1 ? UNP Q88YB5 ? ? 'expression tag' -1 1 1 3IBQ SER A 2 ? UNP Q88YB5 ? ? 'expression tag' 0 2 1 3IBQ LEU A 3 ? UNP Q88YB5 ? ? 'expression tag' 1 3 1 3IBQ GLU A 275 ? UNP Q88YB5 ? ? 'expression tag' 273 4 1 3IBQ GLY A 276 ? UNP Q88YB5 ? ? 'expression tag' 274 5 1 3IBQ HIS A 277 ? UNP Q88YB5 ? ? 'expression tag' 275 6 1 3IBQ HIS A 278 ? UNP Q88YB5 ? ? 'expression tag' 276 7 1 3IBQ HIS A 279 ? UNP Q88YB5 ? ? 'expression tag' 277 8 1 3IBQ HIS A 280 ? UNP Q88YB5 ? ? 'expression tag' 278 9 1 3IBQ HIS A 281 ? UNP Q88YB5 ? ? 'expression tag' 279 10 1 3IBQ HIS A 282 ? UNP Q88YB5 ? ? 'expression tag' 280 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IBQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.2M MgCl2, 0.1M HEPES pH 6.5, 25% PEG3350, 20mM ATP , VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-06-20 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3IBQ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 38.46 _reflns.d_resolution_high 2.00 _reflns.number_obs 19397 _reflns.number_all 20473 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.9 _reflns.B_iso_Wilson_estimate 25.7 _reflns.pdbx_redundancy 11.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.293 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.pdbx_redundancy 8.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1406 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3IBQ _refine.ls_number_reflns_obs 19397 _refine.ls_number_reflns_all 20473 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.46 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.17759 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17531 _refine.ls_R_factor_R_free 0.21946 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1056 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 17.029 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3H74 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.165 _refine.pdbx_overall_ESU_R_Free 0.152 _refine.overall_SU_ML 0.099 _refine.overall_SU_B 3.470 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2037 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 2238 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 38.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 2108 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.633 1.982 ? 2898 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.049 5.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.118 25.233 ? 86 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.094 15.000 ? 313 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.106 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 350 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1581 'X-RAY DIFFRACTION' ? r_nbd_refined 0.213 0.200 ? 947 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.306 0.200 ? 1450 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.295 0.200 ? 133 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.193 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.193 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.517 0.200 ? 24 'X-RAY DIFFRACTION' ? r_mcbond_it 1.192 1.500 ? 1391 'X-RAY DIFFRACTION' ? r_mcangle_it 1.641 2.000 ? 2161 'X-RAY DIFFRACTION' ? r_scbond_it 2.671 3.000 ? 831 'X-RAY DIFFRACTION' ? r_scangle_it 4.032 4.500 ? 737 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 1406 _refine_ls_shell.R_factor_R_work 0.184 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IBQ _struct.title 'Crystal structure of pyridoxal kinase from Lactobacillus plantarum in complex with ATP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IBQ _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Pyridoxal kinase, ATP, PSI-II, 11208c, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, Kinase, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 18 ? MSE A 30 ? ILE A 16 MSE A 28 1 ? 13 HELX_P HELX_P2 2 THR A 59 ? ALA A 71 ? THR A 57 ALA A 69 1 ? 13 HELX_P HELX_P3 3 SER A 85 ? GLN A 99 ? SER A 83 GLN A 97 1 ? 15 HELX_P HELX_P4 4 ASP A 121 ? GLN A 133 ? ASP A 119 GLN A 131 1 ? 13 HELX_P HELX_P5 5 ASN A 141 ? GLY A 150 ? ASN A 139 GLY A 148 1 ? 10 HELX_P HELX_P6 6 ASP A 158 ? ALA A 168 ? ASP A 156 ALA A 166 1 ? 11 HELX_P HELX_P7 7 GLY A 212 ? ARG A 227 ? GLY A 210 ARG A 225 1 ? 16 HELX_P HELX_P8 8 PRO A 230 ? GLN A 252 ? PRO A 228 GLN A 250 1 ? 23 HELX_P HELX_P9 9 LEU A 263 ? GLU A 275 ? LEU A 261 GLU A 273 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 5 C ? ? ? 1_555 A MSE 6 N ? ? A THR 3 A MSE 4 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale2 covale both ? A MSE 6 C ? ? ? 1_555 A LEU 7 N ? ? A MSE 4 A LEU 5 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale3 covale both ? A ALA 29 C ? ? ? 1_555 A MSE 30 N ? ? A ALA 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale4 covale both ? A MSE 30 C ? ? ? 1_555 A GLN 31 N ? ? A MSE 28 A GLN 29 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale5 covale both ? A ALA 127 C ? ? ? 1_555 A MSE 128 N ? ? A ALA 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale6 covale both ? A MSE 128 C ? ? ? 1_555 A ARG 129 N ? ? A MSE 126 A ARG 127 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A ASN 243 C ? ? ? 1_555 A MSE 244 N ? ? A ASN 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A MSE 244 C ? ? ? 1_555 A ALA 245 N ? ? A MSE 242 A ALA 243 1_555 ? ? ? ? ? ? ? 1.322 ? ? metalc1 metalc ? ? B ATP . O1B ? ? ? 1_555 C MG . MG ? ? A ATP 281 A MG 282 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 282 A HOH 348 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 282 A HOH 358 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 282 A HOH 427 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 282 A HOH 447 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 282 A HOH 448 1_555 ? ? ? ? ? ? ? 2.151 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 54 ? VAL A 55 ? VAL A 52 VAL A 53 A 2 ASP A 33 ? THR A 44 ? ASP A 31 THR A 42 A 3 THR A 5 ? VAL A 15 ? THR A 3 VAL A 13 A 4 GLN A 77 ? ILE A 80 ? GLN A 75 ILE A 78 A 5 LEU A 103 ? VAL A 106 ? LEU A 101 VAL A 104 A 6 VAL A 137 ? ILE A 138 ? VAL A 135 ILE A 136 A 7 HIS A 175 ? ALA A 176 ? HIS A 173 ALA A 174 B 1 GLY A 111 ? ASP A 112 ? GLY A 109 ASP A 110 B 2 GLN A 115 ? LEU A 116 ? GLN A 113 LEU A 114 C 1 ILE A 178 ? ARG A 183 ? ILE A 176 ARG A 181 C 2 GLN A 186 ? LEU A 192 ? GLN A 184 LEU A 190 C 3 VAL A 198 ? ARG A 204 ? VAL A 196 ARG A 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 55 ? O VAL A 53 N LEU A 41 ? N LEU A 39 A 2 3 O ALA A 35 ? O ALA A 33 N VAL A 8 ? N VAL A 6 A 3 4 N LEU A 7 ? N LEU A 5 O GLN A 77 ? O GLN A 75 A 4 5 N ILE A 80 ? N ILE A 78 O VAL A 105 ? O VAL A 103 A 5 6 N VAL A 106 ? N VAL A 104 O VAL A 137 ? O VAL A 135 A 6 7 N ILE A 138 ? N ILE A 136 O HIS A 175 ? O HIS A 173 B 1 2 N ASP A 112 ? N ASP A 110 O GLN A 115 ? O GLN A 113 C 1 2 N ILE A 178 ? N ILE A 176 O ALA A 190 ? O ALA A 188 C 2 3 N TRP A 191 ? N TRP A 189 O GLN A 199 ? O GLN A 197 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ATP 281 ? 15 'BINDING SITE FOR RESIDUE ATP A 281' AC2 Software A MG 282 ? 6 'BINDING SITE FOR RESIDUE MG A 282' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 THR A 179 ? THR A 177 . ? 1_555 ? 2 AC1 15 ASP A 180 ? ASP A 178 . ? 1_555 ? 3 AC1 15 LEU A 206 ? LEU A 204 . ? 1_555 ? 4 AC1 15 TYR A 210 ? TYR A 208 . ? 1_555 ? 5 AC1 15 THR A 213 ? THR A 211 . ? 1_555 ? 6 AC1 15 GLY A 214 ? GLY A 212 . ? 1_555 ? 7 AC1 15 ASN A 239 ? ASN A 237 . ? 1_555 ? 8 AC1 15 LEU A 242 ? LEU A 240 . ? 1_555 ? 9 AC1 15 ASN A 243 ? ASN A 241 . ? 1_555 ? 10 AC1 15 MG C . ? MG A 282 . ? 1_555 ? 11 AC1 15 HOH D . ? HOH A 340 . ? 1_555 ? 12 AC1 15 HOH D . ? HOH A 353 . ? 1_555 ? 13 AC1 15 HOH D . ? HOH A 358 . ? 1_555 ? 14 AC1 15 HOH D . ? HOH A 359 . ? 1_555 ? 15 AC1 15 HOH D . ? HOH A 447 . ? 1_555 ? 16 AC2 6 ATP B . ? ATP A 281 . ? 1_555 ? 17 AC2 6 HOH D . ? HOH A 348 . ? 1_555 ? 18 AC2 6 HOH D . ? HOH A 358 . ? 1_555 ? 19 AC2 6 HOH D . ? HOH A 427 . ? 1_555 ? 20 AC2 6 HOH D . ? HOH A 447 . ? 1_555 ? 21 AC2 6 HOH D . ? HOH A 448 . ? 1_555 ? # _database_PDB_matrix.entry_id 3IBQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IBQ _atom_sites.fract_transf_matrix[1][1] 0.015538 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014373 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007555 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 LEU 3 1 ? ? ? A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 THR 5 3 3 THR THR A . n A 1 6 MSE 6 4 4 MSE MSE A . n A 1 7 LEU 7 5 5 LEU LEU A . n A 1 8 VAL 8 6 6 VAL VAL A . n A 1 9 ALA 9 7 7 ALA ALA A . n A 1 10 GLU 10 8 8 GLU GLU A . n A 1 11 ASP 11 9 9 ASP ASP A . n A 1 12 LEU 12 10 10 LEU LEU A . n A 1 13 SER 13 11 11 SER SER A . n A 1 14 ALA 14 12 12 ALA ALA A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 GLY 17 15 15 GLY GLY A . n A 1 18 ILE 18 16 16 ILE ILE A . n A 1 19 SER 19 17 17 SER SER A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 SER 21 19 19 SER SER A . n A 1 22 SER 22 20 20 SER SER A . n A 1 23 ALA 23 21 21 ALA ALA A . n A 1 24 LEU 24 22 22 LEU LEU A . n A 1 25 PRO 25 23 23 PRO PRO A . n A 1 26 VAL 26 24 24 VAL VAL A . n A 1 27 LEU 27 25 25 LEU LEU A . n A 1 28 THR 28 26 26 THR THR A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 MSE 30 28 28 MSE MSE A . n A 1 31 GLN 31 29 29 GLN GLN A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 ASP 33 31 31 ASP ASP A . n A 1 34 VAL 34 32 32 VAL VAL A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 ALA 36 34 34 ALA ALA A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 PRO 38 36 36 PRO PRO A . n A 1 39 THR 39 37 37 THR THR A . n A 1 40 SER 40 38 38 SER SER A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 LEU 42 40 40 LEU LEU A . n A 1 43 SER 43 41 41 SER SER A . n A 1 44 THR 44 42 42 THR THR A . n A 1 45 HIS 45 43 43 HIS HIS A . n A 1 46 THR 46 44 44 THR THR A . n A 1 47 SER 47 45 45 SER SER A . n A 1 48 GLY 48 46 46 GLY GLY A . n A 1 49 TYR 49 47 47 TYR TYR A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 THR 51 49 49 THR THR A . n A 1 52 PRO 52 50 50 PRO PRO A . n A 1 53 ALA 53 51 51 ALA ALA A . n A 1 54 VAL 54 52 52 VAL VAL A . n A 1 55 VAL 55 53 53 VAL VAL A . n A 1 56 ASP 56 54 54 ASP ASP A . n A 1 57 LEU 57 55 55 LEU LEU A . n A 1 58 SER 58 56 56 SER SER A . n A 1 59 THR 59 57 57 THR THR A . n A 1 60 TRP 60 58 58 TRP TRP A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 PRO 62 60 60 PRO PRO A . n A 1 63 GLN 63 61 61 GLN GLN A . n A 1 64 VAL 64 62 62 VAL VAL A . n A 1 65 PHE 65 63 63 PHE PHE A . n A 1 66 ALA 66 64 64 ALA ALA A . n A 1 67 HIS 67 65 65 HIS HIS A . n A 1 68 TRP 68 66 66 TRP TRP A . n A 1 69 THR 69 67 67 THR THR A . n A 1 70 ARG 70 68 68 ARG ARG A . n A 1 71 ALA 71 69 69 ALA ALA A . n A 1 72 GLN 72 70 70 GLN GLN A . n A 1 73 LEU 73 71 71 LEU LEU A . n A 1 74 HIS 74 72 72 HIS HIS A . n A 1 75 PHE 75 73 73 PHE PHE A . n A 1 76 ASP 76 74 74 ASP ASP A . n A 1 77 GLN 77 75 75 GLN GLN A . n A 1 78 ALA 78 76 76 ALA ALA A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 ILE 80 78 78 ILE ILE A . n A 1 81 GLY 81 79 79 GLY GLY A . n A 1 82 TYR 82 80 80 TYR TYR A . n A 1 83 VAL 83 81 81 VAL VAL A . n A 1 84 GLY 84 82 82 GLY GLY A . n A 1 85 SER 85 83 83 SER SER A . n A 1 86 VAL 86 84 84 VAL VAL A . n A 1 87 ALA 87 85 85 ALA ALA A . n A 1 88 LEU 88 86 86 LEU LEU A . n A 1 89 CYS 89 87 87 CYS CYS A . n A 1 90 GLN 90 88 88 GLN GLN A . n A 1 91 GLN 91 89 89 GLN GLN A . n A 1 92 ILE 92 90 90 ILE ILE A . n A 1 93 THR 93 91 91 THR THR A . n A 1 94 THR 94 92 92 THR THR A . n A 1 95 TYR 95 93 93 TYR TYR A . n A 1 96 LEU 96 94 94 LEU LEU A . n A 1 97 GLU 97 95 95 GLU GLU A . n A 1 98 GLN 98 96 96 GLN GLN A . n A 1 99 GLN 99 97 97 GLN GLN A . n A 1 100 THR 100 98 98 THR THR A . n A 1 101 LEU 101 99 99 LEU LEU A . n A 1 102 SER 102 100 100 SER SER A . n A 1 103 LEU 103 101 101 LEU LEU A . n A 1 104 LEU 104 102 102 LEU LEU A . n A 1 105 VAL 105 103 103 VAL VAL A . n A 1 106 VAL 106 104 104 VAL VAL A . n A 1 107 ASP 107 105 105 ASP ASP A . n A 1 108 PRO 108 106 106 PRO PRO A . n A 1 109 VAL 109 107 107 VAL VAL A . n A 1 110 LEU 110 108 108 LEU LEU A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 ASP 112 110 110 ASP ASP A . n A 1 113 LEU 113 111 111 LEU LEU A . n A 1 114 GLY 114 112 112 GLY GLY A . n A 1 115 GLN 115 113 113 GLN GLN A . n A 1 116 LEU 116 114 114 LEU LEU A . n A 1 117 TYR 117 115 115 TYR TYR A . n A 1 118 GLN 118 116 116 GLN GLN A . n A 1 119 GLY 119 117 117 GLY GLY A . n A 1 120 PHE 120 118 118 PHE PHE A . n A 1 121 ASP 121 119 119 ASP ASP A . n A 1 122 GLN 122 120 120 GLN GLN A . n A 1 123 ASP 123 121 121 ASP ASP A . n A 1 124 TYR 124 122 122 TYR TYR A . n A 1 125 VAL 125 123 123 VAL VAL A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 ALA 127 125 125 ALA ALA A . n A 1 128 MSE 128 126 126 MSE MSE A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 GLN 130 128 128 GLN GLN A . n A 1 131 LEU 131 129 129 LEU LEU A . n A 1 132 ILE 132 130 130 ILE ILE A . n A 1 133 GLN 133 131 131 GLN GLN A . n A 1 134 GLN 134 132 132 GLN GLN A . n A 1 135 ALA 135 133 133 ALA ALA A . n A 1 136 ASP 136 134 134 ASP ASP A . n A 1 137 VAL 137 135 135 VAL VAL A . n A 1 138 ILE 138 136 136 ILE ILE A . n A 1 139 LEU 139 137 137 LEU LEU A . n A 1 140 PRO 140 138 138 PRO PRO A . n A 1 141 ASN 141 139 139 ASN ASN A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 THR 143 141 141 THR THR A . n A 1 144 GLU 144 142 142 GLU GLU A . n A 1 145 ALA 145 143 143 ALA ALA A . n A 1 146 ALA 146 144 144 ALA ALA A . n A 1 147 LEU 147 145 145 LEU LEU A . n A 1 148 LEU 148 146 146 LEU LEU A . n A 1 149 THR 149 147 147 THR THR A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 ALA 151 149 149 ALA ALA A . n A 1 152 PRO 152 150 150 PRO PRO A . n A 1 153 TYR 153 151 151 TYR TYR A . n A 1 154 GLN 154 152 152 GLN GLN A . n A 1 155 VAL 155 153 153 VAL VAL A . n A 1 156 THR 156 154 154 THR THR A . n A 1 157 PRO 157 155 155 PRO PRO A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 LEU 159 157 157 LEU LEU A . n A 1 160 GLU 160 158 158 GLU GLU A . n A 1 161 VAL 161 159 159 VAL VAL A . n A 1 162 ILE 162 160 160 ILE ILE A . n A 1 163 LEU 163 161 161 LEU LEU A . n A 1 164 PRO 164 162 162 PRO PRO A . n A 1 165 ALA 165 163 163 ALA ALA A . n A 1 166 LEU 166 164 164 LEU LEU A . n A 1 167 GLN 167 165 165 GLN GLN A . n A 1 168 ALA 168 166 166 ALA ALA A . n A 1 169 GLN 169 167 167 GLN GLN A . n A 1 170 LEU 170 168 168 LEU LEU A . n A 1 171 LYS 171 169 169 LYS LYS A . n A 1 172 THR 172 170 170 THR THR A . n A 1 173 GLY 173 171 171 GLY GLY A . n A 1 174 ALA 174 172 172 ALA ALA A . n A 1 175 HIS 175 173 173 HIS HIS A . n A 1 176 ALA 176 174 174 ALA ALA A . n A 1 177 VAL 177 175 175 VAL VAL A . n A 1 178 ILE 178 176 176 ILE ILE A . n A 1 179 THR 179 177 177 THR THR A . n A 1 180 ASP 180 178 178 ASP ASP A . n A 1 181 VAL 181 179 179 VAL VAL A . n A 1 182 GLN 182 180 180 GLN GLN A . n A 1 183 ARG 183 181 181 ARG ARG A . n A 1 184 ALA 184 182 182 ALA ALA A . n A 1 185 ASP 185 183 183 ASP ASP A . n A 1 186 GLN 186 184 184 GLN GLN A . n A 1 187 ILE 187 185 185 ILE ILE A . n A 1 188 GLY 188 186 186 GLY GLY A . n A 1 189 CYS 189 187 187 CYS CYS A . n A 1 190 ALA 190 188 188 ALA ALA A . n A 1 191 TRP 191 189 189 TRP TRP A . n A 1 192 LEU 192 190 190 LEU LEU A . n A 1 193 ASP 193 191 191 ASP ASP A . n A 1 194 GLU 194 192 192 GLU GLU A . n A 1 195 ALA 195 193 193 ALA ALA A . n A 1 196 GLY 196 194 194 GLY GLY A . n A 1 197 HIS 197 195 195 HIS HIS A . n A 1 198 VAL 198 196 196 VAL VAL A . n A 1 199 GLN 199 197 197 GLN GLN A . n A 1 200 TYR 200 198 198 TYR TYR A . n A 1 201 CYS 201 199 199 CYS CYS A . n A 1 202 GLY 202 200 200 GLY GLY A . n A 1 203 ALA 203 201 201 ALA ALA A . n A 1 204 ARG 204 202 202 ARG ARG A . n A 1 205 ARG 205 203 203 ARG ARG A . n A 1 206 LEU 206 204 204 LEU LEU A . n A 1 207 PRO 207 205 205 PRO PRO A . n A 1 208 GLY 208 206 206 GLY GLY A . n A 1 209 HIS 209 207 207 HIS HIS A . n A 1 210 TYR 210 208 208 TYR TYR A . n A 1 211 ASN 211 209 209 ASN ASN A . n A 1 212 GLY 212 210 210 GLY GLY A . n A 1 213 THR 213 211 211 THR THR A . n A 1 214 GLY 214 212 212 GLY GLY A . n A 1 215 ASP 215 213 213 ASP ASP A . n A 1 216 THR 216 214 214 THR THR A . n A 1 217 LEU 217 215 215 LEU LEU A . n A 1 218 ALA 218 216 216 ALA ALA A . n A 1 219 ALA 219 217 217 ALA ALA A . n A 1 220 VAL 220 218 218 VAL VAL A . n A 1 221 ILE 221 219 219 ILE ILE A . n A 1 222 ALA 222 220 220 ALA ALA A . n A 1 223 GLY 223 221 221 GLY GLY A . n A 1 224 LEU 224 222 222 LEU LEU A . n A 1 225 LEU 225 223 223 LEU LEU A . n A 1 226 GLY 226 224 224 GLY GLY A . n A 1 227 ARG 227 225 225 ARG ARG A . n A 1 228 GLY 228 226 226 GLY GLY A . n A 1 229 TYR 229 227 227 TYR TYR A . n A 1 230 PRO 230 228 228 PRO PRO A . n A 1 231 LEU 231 229 229 LEU LEU A . n A 1 232 ALA 232 230 230 ALA ALA A . n A 1 233 PRO 233 231 231 PRO PRO A . n A 1 234 THR 234 232 232 THR THR A . n A 1 235 LEU 235 233 233 LEU LEU A . n A 1 236 ALA 236 234 234 ALA ALA A . n A 1 237 ARG 237 235 235 ARG ARG A . n A 1 238 ALA 238 236 236 ALA ALA A . n A 1 239 ASN 239 237 237 ASN ASN A . n A 1 240 GLN 240 238 238 GLN GLN A . n A 1 241 TRP 241 239 239 TRP TRP A . n A 1 242 LEU 242 240 240 LEU LEU A . n A 1 243 ASN 243 241 241 ASN ASN A . n A 1 244 MSE 244 242 242 MSE MSE A . n A 1 245 ALA 245 243 243 ALA ALA A . n A 1 246 VAL 246 244 244 VAL VAL A . n A 1 247 ALA 247 245 245 ALA ALA A . n A 1 248 GLU 248 246 246 GLU GLU A . n A 1 249 THR 249 247 247 THR THR A . n A 1 250 ILE 250 248 248 ILE ILE A . n A 1 251 ALA 251 249 249 ALA ALA A . n A 1 252 GLN 252 250 250 GLN GLN A . n A 1 253 ASN 253 251 251 ASN ASN A . n A 1 254 ARG 254 252 252 ARG ARG A . n A 1 255 THR 255 253 253 THR THR A . n A 1 256 ASP 256 254 254 ASP ASP A . n A 1 257 ASP 257 255 255 ASP ASP A . n A 1 258 ARG 258 256 256 ARG ARG A . n A 1 259 GLN 259 257 257 GLN GLN A . n A 1 260 GLY 260 258 258 GLY GLY A . n A 1 261 VAL 261 259 259 VAL VAL A . n A 1 262 ALA 262 260 260 ALA ALA A . n A 1 263 LEU 263 261 261 LEU LEU A . n A 1 264 GLY 264 262 262 GLY GLY A . n A 1 265 ASP 265 263 263 ASP ASP A . n A 1 266 LEU 266 264 264 LEU LEU A . n A 1 267 LEU 267 265 265 LEU LEU A . n A 1 268 GLN 268 266 266 GLN GLN A . n A 1 269 ALA 269 267 267 ALA ALA A . n A 1 270 ILE 270 268 268 ILE ILE A . n A 1 271 LEU 271 269 269 LEU LEU A . n A 1 272 ALA 272 270 270 ALA ALA A . n A 1 273 LEU 273 271 271 LEU LEU A . n A 1 274 ASN 274 272 272 ASN ASN A . n A 1 275 GLU 275 273 273 GLU GLU A . n A 1 276 GLY 276 274 ? ? ? A . n A 1 277 HIS 277 275 ? ? ? A . n A 1 278 HIS 278 276 ? ? ? A . n A 1 279 HIS 279 277 ? ? ? A . n A 1 280 HIS 280 278 ? ? ? A . n A 1 281 HIS 281 279 ? ? ? A . n A 1 282 HIS 282 280 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP 1 281 1 ATP ATP A . C 3 MG 1 282 1 MG MG A . D 4 HOH 1 283 1 HOH HOH A . D 4 HOH 2 284 2 HOH HOH A . D 4 HOH 3 285 3 HOH HOH A . D 4 HOH 4 286 4 HOH HOH A . D 4 HOH 5 287 5 HOH HOH A . D 4 HOH 6 288 6 HOH HOH A . D 4 HOH 7 289 7 HOH HOH A . D 4 HOH 8 290 8 HOH HOH A . D 4 HOH 9 291 9 HOH HOH A . D 4 HOH 10 292 10 HOH HOH A . D 4 HOH 11 293 12 HOH HOH A . D 4 HOH 12 294 13 HOH HOH A . D 4 HOH 13 295 14 HOH HOH A . D 4 HOH 14 296 15 HOH HOH A . D 4 HOH 15 297 16 HOH HOH A . D 4 HOH 16 298 17 HOH HOH A . D 4 HOH 17 299 18 HOH HOH A . D 4 HOH 18 300 19 HOH HOH A . D 4 HOH 19 301 20 HOH HOH A . D 4 HOH 20 302 21 HOH HOH A . D 4 HOH 21 303 22 HOH HOH A . D 4 HOH 22 304 23 HOH HOH A . D 4 HOH 23 305 24 HOH HOH A . D 4 HOH 24 306 25 HOH HOH A . D 4 HOH 25 307 26 HOH HOH A . D 4 HOH 26 308 27 HOH HOH A . D 4 HOH 27 309 28 HOH HOH A . D 4 HOH 28 310 29 HOH HOH A . D 4 HOH 29 311 30 HOH HOH A . D 4 HOH 30 312 31 HOH HOH A . D 4 HOH 31 313 32 HOH HOH A . D 4 HOH 32 314 33 HOH HOH A . D 4 HOH 33 315 34 HOH HOH A . D 4 HOH 34 316 35 HOH HOH A . D 4 HOH 35 317 36 HOH HOH A . D 4 HOH 36 318 37 HOH HOH A . D 4 HOH 37 319 38 HOH HOH A . D 4 HOH 38 320 39 HOH HOH A . D 4 HOH 39 321 40 HOH HOH A . D 4 HOH 40 322 41 HOH HOH A . D 4 HOH 41 323 42 HOH HOH A . D 4 HOH 42 324 43 HOH HOH A . D 4 HOH 43 325 44 HOH HOH A . D 4 HOH 44 326 45 HOH HOH A . D 4 HOH 45 327 46 HOH HOH A . D 4 HOH 46 328 47 HOH HOH A . D 4 HOH 47 329 48 HOH HOH A . D 4 HOH 48 330 49 HOH HOH A . D 4 HOH 49 331 50 HOH HOH A . D 4 HOH 50 332 51 HOH HOH A . D 4 HOH 51 333 52 HOH HOH A . D 4 HOH 52 334 53 HOH HOH A . D 4 HOH 53 335 54 HOH HOH A . D 4 HOH 54 336 55 HOH HOH A . D 4 HOH 55 337 56 HOH HOH A . D 4 HOH 56 338 57 HOH HOH A . D 4 HOH 57 339 58 HOH HOH A . D 4 HOH 58 340 59 HOH HOH A . D 4 HOH 59 341 60 HOH HOH A . D 4 HOH 60 342 61 HOH HOH A . D 4 HOH 61 343 62 HOH HOH A . D 4 HOH 62 344 63 HOH HOH A . D 4 HOH 63 345 64 HOH HOH A . D 4 HOH 64 346 65 HOH HOH A . D 4 HOH 65 347 66 HOH HOH A . D 4 HOH 66 348 67 HOH HOH A . D 4 HOH 67 349 68 HOH HOH A . D 4 HOH 68 350 69 HOH HOH A . D 4 HOH 69 351 70 HOH HOH A . D 4 HOH 70 352 71 HOH HOH A . D 4 HOH 71 353 72 HOH HOH A . D 4 HOH 72 354 73 HOH HOH A . D 4 HOH 73 355 74 HOH HOH A . D 4 HOH 74 356 75 HOH HOH A . D 4 HOH 75 357 76 HOH HOH A . D 4 HOH 76 358 77 HOH HOH A . D 4 HOH 77 359 78 HOH HOH A . D 4 HOH 78 360 79 HOH HOH A . D 4 HOH 79 361 80 HOH HOH A . D 4 HOH 80 362 81 HOH HOH A . D 4 HOH 81 363 82 HOH HOH A . D 4 HOH 82 364 83 HOH HOH A . D 4 HOH 83 365 84 HOH HOH A . D 4 HOH 84 366 85 HOH HOH A . D 4 HOH 85 367 86 HOH HOH A . D 4 HOH 86 368 87 HOH HOH A . D 4 HOH 87 369 88 HOH HOH A . D 4 HOH 88 370 89 HOH HOH A . D 4 HOH 89 371 90 HOH HOH A . D 4 HOH 90 372 91 HOH HOH A . D 4 HOH 91 373 92 HOH HOH A . D 4 HOH 92 374 93 HOH HOH A . D 4 HOH 93 375 94 HOH HOH A . D 4 HOH 94 376 95 HOH HOH A . D 4 HOH 95 377 96 HOH HOH A . D 4 HOH 96 378 97 HOH HOH A . D 4 HOH 97 379 99 HOH HOH A . D 4 HOH 98 380 101 HOH HOH A . D 4 HOH 99 381 102 HOH HOH A . D 4 HOH 100 382 103 HOH HOH A . D 4 HOH 101 383 104 HOH HOH A . D 4 HOH 102 384 105 HOH HOH A . D 4 HOH 103 385 106 HOH HOH A . D 4 HOH 104 386 108 HOH HOH A . D 4 HOH 105 387 111 HOH HOH A . D 4 HOH 106 388 112 HOH HOH A . D 4 HOH 107 389 113 HOH HOH A . D 4 HOH 108 390 114 HOH HOH A . D 4 HOH 109 391 115 HOH HOH A . D 4 HOH 110 392 116 HOH HOH A . D 4 HOH 111 393 117 HOH HOH A . D 4 HOH 112 394 120 HOH HOH A . D 4 HOH 113 395 121 HOH HOH A . D 4 HOH 114 396 123 HOH HOH A . D 4 HOH 115 397 124 HOH HOH A . D 4 HOH 116 398 125 HOH HOH A . D 4 HOH 117 399 126 HOH HOH A . D 4 HOH 118 400 127 HOH HOH A . D 4 HOH 119 401 128 HOH HOH A . D 4 HOH 120 402 129 HOH HOH A . D 4 HOH 121 403 130 HOH HOH A . D 4 HOH 122 404 132 HOH HOH A . D 4 HOH 123 405 133 HOH HOH A . D 4 HOH 124 406 135 HOH HOH A . D 4 HOH 125 407 136 HOH HOH A . D 4 HOH 126 408 137 HOH HOH A . D 4 HOH 127 409 139 HOH HOH A . D 4 HOH 128 410 140 HOH HOH A . D 4 HOH 129 411 141 HOH HOH A . D 4 HOH 130 412 142 HOH HOH A . D 4 HOH 131 413 143 HOH HOH A . D 4 HOH 132 414 145 HOH HOH A . D 4 HOH 133 415 146 HOH HOH A . D 4 HOH 134 416 147 HOH HOH A . D 4 HOH 135 417 148 HOH HOH A . D 4 HOH 136 418 149 HOH HOH A . D 4 HOH 137 419 150 HOH HOH A . D 4 HOH 138 420 2 HOH HOH A . D 4 HOH 139 421 4 HOH HOH A . D 4 HOH 140 422 5 HOH HOH A . D 4 HOH 141 423 6 HOH HOH A . D 4 HOH 142 424 7 HOH HOH A . D 4 HOH 143 425 8 HOH HOH A . D 4 HOH 144 426 10 HOH HOH A . D 4 HOH 145 427 11 HOH HOH A . D 4 HOH 146 428 1 HOH HOH A . D 4 HOH 147 429 2 HOH HOH A . D 4 HOH 148 430 1 HOH HOH A . D 4 HOH 149 431 2 HOH HOH A . D 4 HOH 150 432 3 HOH HOH A . D 4 HOH 151 433 4 HOH HOH A . D 4 HOH 152 434 5 HOH HOH A . D 4 HOH 153 435 6 HOH HOH A . D 4 HOH 154 436 7 HOH HOH A . D 4 HOH 155 437 8 HOH HOH A . D 4 HOH 156 438 9 HOH HOH A . D 4 HOH 157 439 10 HOH HOH A . D 4 HOH 158 440 11 HOH HOH A . D 4 HOH 159 441 12 HOH HOH A . D 4 HOH 160 442 14 HOH HOH A . D 4 HOH 161 443 15 HOH HOH A . D 4 HOH 162 444 16 HOH HOH A . D 4 HOH 163 445 1 HOH HOH A . D 4 HOH 164 446 2 HOH HOH A . D 4 HOH 165 447 1 HOH HOH A . D 4 HOH 166 448 1 HOH HOH A . D 4 HOH 167 449 1 HOH HOH A . D 4 HOH 168 450 2 HOH HOH A . D 4 HOH 169 451 3 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 4 ? MET SELENOMETHIONINE 2 A MSE 30 A MSE 28 ? MET SELENOMETHIONINE 3 A MSE 128 A MSE 126 ? MET SELENOMETHIONINE 4 A MSE 244 A MSE 242 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4930 ? 2 MORE -53 ? 2 'SSA (A^2)' 21340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 64.3570000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 66.1845000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1B ? B ATP . ? A ATP 281 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 348 ? 1_555 109.4 ? 2 O1B ? B ATP . ? A ATP 281 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 358 ? 1_555 111.5 ? 3 O ? D HOH . ? A HOH 348 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 358 ? 1_555 59.3 ? 4 O1B ? B ATP . ? A ATP 281 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 427 ? 1_555 157.0 ? 5 O ? D HOH . ? A HOH 348 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 427 ? 1_555 60.3 ? 6 O ? D HOH . ? A HOH 358 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 427 ? 1_555 82.0 ? 7 O1B ? B ATP . ? A ATP 281 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 447 ? 1_555 64.7 ? 8 O ? D HOH . ? A HOH 348 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 447 ? 1_555 91.9 ? 9 O ? D HOH . ? A HOH 358 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 447 ? 1_555 149.0 ? 10 O ? D HOH . ? A HOH 427 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 447 ? 1_555 94.0 ? 11 O1B ? B ATP . ? A ATP 281 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 448 ? 1_555 107.4 ? 12 O ? D HOH . ? A HOH 348 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 448 ? 1_555 143.1 ? 13 O ? D HOH . ? A HOH 358 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 448 ? 1_555 104.6 ? 14 O ? D HOH . ? A HOH 427 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 448 ? 1_555 85.9 ? 15 O ? D HOH . ? A HOH 447 ? 1_555 MG ? C MG . ? A MG 282 ? 1_555 O ? D HOH . ? A HOH 448 ? 1_555 105.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-02-10 5 'Structure model' 1 4 2023-09-06 6 'Structure model' 1 5 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 4 'Structure model' citation_author 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_initial_refinement_model 11 6 'Structure model' chem_comp_atom 12 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_citation_author.identifier_ORCID' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 6 'Structure model' '_chem_comp_atom.atom_id' 15 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 REFMAC refinement 5.2.0019 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A MSE 4 ? ? SE A MSE 4 ? ? 1.700 1.950 -0.250 0.034 N 2 1 SE A MSE 242 ? ? CE A MSE 242 ? ? 1.581 1.950 -0.369 0.059 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 17 ? ? 33.94 -124.53 2 1 GLN A 29 ? ? 75.41 30.02 3 1 VAL A 81 ? ? -105.47 -63.24 4 1 LEU A 108 ? ? -142.78 -28.53 5 1 ASP A 119 ? ? -129.87 -166.66 6 1 ALA A 182 ? ? 58.39 -125.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -1 ? A MSE 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A LEU 1 ? A LEU 3 4 1 Y 1 A GLY 274 ? A GLY 276 5 1 Y 1 A HIS 275 ? A HIS 277 6 1 Y 1 A HIS 276 ? A HIS 278 7 1 Y 1 A HIS 277 ? A HIS 279 8 1 Y 1 A HIS 278 ? A HIS 280 9 1 Y 1 A HIS 279 ? A HIS 281 10 1 Y 1 A HIS 280 ? A HIS 282 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 ATP PG P N N 74 ATP O1G O N N 75 ATP O2G O N N 76 ATP O3G O N N 77 ATP PB P N R 78 ATP O1B O N N 79 ATP O2B O N N 80 ATP O3B O N N 81 ATP PA P N R 82 ATP O1A O N N 83 ATP O2A O N N 84 ATP O3A O N N 85 ATP "O5'" O N N 86 ATP "C5'" C N N 87 ATP "C4'" C N R 88 ATP "O4'" O N N 89 ATP "C3'" C N S 90 ATP "O3'" O N N 91 ATP "C2'" C N R 92 ATP "O2'" O N N 93 ATP "C1'" C N R 94 ATP N9 N Y N 95 ATP C8 C Y N 96 ATP N7 N Y N 97 ATP C5 C Y N 98 ATP C6 C Y N 99 ATP N6 N N N 100 ATP N1 N Y N 101 ATP C2 C Y N 102 ATP N3 N Y N 103 ATP C4 C Y N 104 ATP HOG2 H N N 105 ATP HOG3 H N N 106 ATP HOB2 H N N 107 ATP HOA2 H N N 108 ATP "H5'1" H N N 109 ATP "H5'2" H N N 110 ATP "H4'" H N N 111 ATP "H3'" H N N 112 ATP "HO3'" H N N 113 ATP "H2'" H N N 114 ATP "HO2'" H N N 115 ATP "H1'" H N N 116 ATP H8 H N N 117 ATP HN61 H N N 118 ATP HN62 H N N 119 ATP H2 H N N 120 CYS N N N N 121 CYS CA C N R 122 CYS C C N N 123 CYS O O N N 124 CYS CB C N N 125 CYS SG S N N 126 CYS OXT O N N 127 CYS H H N N 128 CYS H2 H N N 129 CYS HA H N N 130 CYS HB2 H N N 131 CYS HB3 H N N 132 CYS HG H N N 133 CYS HXT H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MG MG MG N N 277 MSE N N N N 278 MSE CA C N S 279 MSE C C N N 280 MSE O O N N 281 MSE OXT O N N 282 MSE CB C N N 283 MSE CG C N N 284 MSE SE SE N N 285 MSE CE C N N 286 MSE H H N N 287 MSE H2 H N N 288 MSE HA H N N 289 MSE HXT H N N 290 MSE HB2 H N N 291 MSE HB3 H N N 292 MSE HG2 H N N 293 MSE HG3 H N N 294 MSE HE1 H N N 295 MSE HE2 H N N 296 MSE HE3 H N N 297 PHE N N N N 298 PHE CA C N S 299 PHE C C N N 300 PHE O O N N 301 PHE CB C N N 302 PHE CG C Y N 303 PHE CD1 C Y N 304 PHE CD2 C Y N 305 PHE CE1 C Y N 306 PHE CE2 C Y N 307 PHE CZ C Y N 308 PHE OXT O N N 309 PHE H H N N 310 PHE H2 H N N 311 PHE HA H N N 312 PHE HB2 H N N 313 PHE HB3 H N N 314 PHE HD1 H N N 315 PHE HD2 H N N 316 PHE HE1 H N N 317 PHE HE2 H N N 318 PHE HZ H N N 319 PHE HXT H N N 320 PRO N N N N 321 PRO CA C N S 322 PRO C C N N 323 PRO O O N N 324 PRO CB C N N 325 PRO CG C N N 326 PRO CD C N N 327 PRO OXT O N N 328 PRO H H N N 329 PRO HA H N N 330 PRO HB2 H N N 331 PRO HB3 H N N 332 PRO HG2 H N N 333 PRO HG3 H N N 334 PRO HD2 H N N 335 PRO HD3 H N N 336 PRO HXT H N N 337 SER N N N N 338 SER CA C N S 339 SER C C N N 340 SER O O N N 341 SER CB C N N 342 SER OG O N N 343 SER OXT O N N 344 SER H H N N 345 SER H2 H N N 346 SER HA H N N 347 SER HB2 H N N 348 SER HB3 H N N 349 SER HG H N N 350 SER HXT H N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TRP N N N N 369 TRP CA C N S 370 TRP C C N N 371 TRP O O N N 372 TRP CB C N N 373 TRP CG C Y N 374 TRP CD1 C Y N 375 TRP CD2 C Y N 376 TRP NE1 N Y N 377 TRP CE2 C Y N 378 TRP CE3 C Y N 379 TRP CZ2 C Y N 380 TRP CZ3 C Y N 381 TRP CH2 C Y N 382 TRP OXT O N N 383 TRP H H N N 384 TRP H2 H N N 385 TRP HA H N N 386 TRP HB2 H N N 387 TRP HB3 H N N 388 TRP HD1 H N N 389 TRP HE1 H N N 390 TRP HE3 H N N 391 TRP HZ2 H N N 392 TRP HZ3 H N N 393 TRP HH2 H N N 394 TRP HXT H N N 395 TYR N N N N 396 TYR CA C N S 397 TYR C C N N 398 TYR O O N N 399 TYR CB C N N 400 TYR CG C Y N 401 TYR CD1 C Y N 402 TYR CD2 C Y N 403 TYR CE1 C Y N 404 TYR CE2 C Y N 405 TYR CZ C Y N 406 TYR OH O N N 407 TYR OXT O N N 408 TYR H H N N 409 TYR H2 H N N 410 TYR HA H N N 411 TYR HB2 H N N 412 TYR HB3 H N N 413 TYR HD1 H N N 414 TYR HD2 H N N 415 TYR HE1 H N N 416 TYR HE2 H N N 417 TYR HH H N N 418 TYR HXT H N N 419 VAL N N N N 420 VAL CA C N S 421 VAL C C N N 422 VAL O O N N 423 VAL CB C N N 424 VAL CG1 C N N 425 VAL CG2 C N N 426 VAL OXT O N N 427 VAL H H N N 428 VAL H2 H N N 429 VAL HA H N N 430 VAL HB H N N 431 VAL HG11 H N N 432 VAL HG12 H N N 433 VAL HG13 H N N 434 VAL HG21 H N N 435 VAL HG22 H N N 436 VAL HG23 H N N 437 VAL HXT H N N 438 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 ATP PG O1G doub N N 70 ATP PG O2G sing N N 71 ATP PG O3G sing N N 72 ATP PG O3B sing N N 73 ATP O2G HOG2 sing N N 74 ATP O3G HOG3 sing N N 75 ATP PB O1B doub N N 76 ATP PB O2B sing N N 77 ATP PB O3B sing N N 78 ATP PB O3A sing N N 79 ATP O2B HOB2 sing N N 80 ATP PA O1A doub N N 81 ATP PA O2A sing N N 82 ATP PA O3A sing N N 83 ATP PA "O5'" sing N N 84 ATP O2A HOA2 sing N N 85 ATP "O5'" "C5'" sing N N 86 ATP "C5'" "C4'" sing N N 87 ATP "C5'" "H5'1" sing N N 88 ATP "C5'" "H5'2" sing N N 89 ATP "C4'" "O4'" sing N N 90 ATP "C4'" "C3'" sing N N 91 ATP "C4'" "H4'" sing N N 92 ATP "O4'" "C1'" sing N N 93 ATP "C3'" "O3'" sing N N 94 ATP "C3'" "C2'" sing N N 95 ATP "C3'" "H3'" sing N N 96 ATP "O3'" "HO3'" sing N N 97 ATP "C2'" "O2'" sing N N 98 ATP "C2'" "C1'" sing N N 99 ATP "C2'" "H2'" sing N N 100 ATP "O2'" "HO2'" sing N N 101 ATP "C1'" N9 sing N N 102 ATP "C1'" "H1'" sing N N 103 ATP N9 C8 sing Y N 104 ATP N9 C4 sing Y N 105 ATP C8 N7 doub Y N 106 ATP C8 H8 sing N N 107 ATP N7 C5 sing Y N 108 ATP C5 C6 sing Y N 109 ATP C5 C4 doub Y N 110 ATP C6 N6 sing N N 111 ATP C6 N1 doub Y N 112 ATP N6 HN61 sing N N 113 ATP N6 HN62 sing N N 114 ATP N1 C2 sing Y N 115 ATP C2 N3 doub Y N 116 ATP C2 H2 sing N N 117 ATP N3 C4 sing Y N 118 CYS N CA sing N N 119 CYS N H sing N N 120 CYS N H2 sing N N 121 CYS CA C sing N N 122 CYS CA CB sing N N 123 CYS CA HA sing N N 124 CYS C O doub N N 125 CYS C OXT sing N N 126 CYS CB SG sing N N 127 CYS CB HB2 sing N N 128 CYS CB HB3 sing N N 129 CYS SG HG sing N N 130 CYS OXT HXT sing N N 131 GLN N CA sing N N 132 GLN N H sing N N 133 GLN N H2 sing N N 134 GLN CA C sing N N 135 GLN CA CB sing N N 136 GLN CA HA sing N N 137 GLN C O doub N N 138 GLN C OXT sing N N 139 GLN CB CG sing N N 140 GLN CB HB2 sing N N 141 GLN CB HB3 sing N N 142 GLN CG CD sing N N 143 GLN CG HG2 sing N N 144 GLN CG HG3 sing N N 145 GLN CD OE1 doub N N 146 GLN CD NE2 sing N N 147 GLN NE2 HE21 sing N N 148 GLN NE2 HE22 sing N N 149 GLN OXT HXT sing N N 150 GLU N CA sing N N 151 GLU N H sing N N 152 GLU N H2 sing N N 153 GLU CA C sing N N 154 GLU CA CB sing N N 155 GLU CA HA sing N N 156 GLU C O doub N N 157 GLU C OXT sing N N 158 GLU CB CG sing N N 159 GLU CB HB2 sing N N 160 GLU CB HB3 sing N N 161 GLU CG CD sing N N 162 GLU CG HG2 sing N N 163 GLU CG HG3 sing N N 164 GLU CD OE1 doub N N 165 GLU CD OE2 sing N N 166 GLU OE2 HE2 sing N N 167 GLU OXT HXT sing N N 168 GLY N CA sing N N 169 GLY N H sing N N 170 GLY N H2 sing N N 171 GLY CA C sing N N 172 GLY CA HA2 sing N N 173 GLY CA HA3 sing N N 174 GLY C O doub N N 175 GLY C OXT sing N N 176 GLY OXT HXT sing N N 177 HIS N CA sing N N 178 HIS N H sing N N 179 HIS N H2 sing N N 180 HIS CA C sing N N 181 HIS CA CB sing N N 182 HIS CA HA sing N N 183 HIS C O doub N N 184 HIS C OXT sing N N 185 HIS CB CG sing N N 186 HIS CB HB2 sing N N 187 HIS CB HB3 sing N N 188 HIS CG ND1 sing Y N 189 HIS CG CD2 doub Y N 190 HIS ND1 CE1 doub Y N 191 HIS ND1 HD1 sing N N 192 HIS CD2 NE2 sing Y N 193 HIS CD2 HD2 sing N N 194 HIS CE1 NE2 sing Y N 195 HIS CE1 HE1 sing N N 196 HIS NE2 HE2 sing N N 197 HIS OXT HXT sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 ILE N CA sing N N 201 ILE N H sing N N 202 ILE N H2 sing N N 203 ILE CA C sing N N 204 ILE CA CB sing N N 205 ILE CA HA sing N N 206 ILE C O doub N N 207 ILE C OXT sing N N 208 ILE CB CG1 sing N N 209 ILE CB CG2 sing N N 210 ILE CB HB sing N N 211 ILE CG1 CD1 sing N N 212 ILE CG1 HG12 sing N N 213 ILE CG1 HG13 sing N N 214 ILE CG2 HG21 sing N N 215 ILE CG2 HG22 sing N N 216 ILE CG2 HG23 sing N N 217 ILE CD1 HD11 sing N N 218 ILE CD1 HD12 sing N N 219 ILE CD1 HD13 sing N N 220 ILE OXT HXT sing N N 221 LEU N CA sing N N 222 LEU N H sing N N 223 LEU N H2 sing N N 224 LEU CA C sing N N 225 LEU CA CB sing N N 226 LEU CA HA sing N N 227 LEU C O doub N N 228 LEU C OXT sing N N 229 LEU CB CG sing N N 230 LEU CB HB2 sing N N 231 LEU CB HB3 sing N N 232 LEU CG CD1 sing N N 233 LEU CG CD2 sing N N 234 LEU CG HG sing N N 235 LEU CD1 HD11 sing N N 236 LEU CD1 HD12 sing N N 237 LEU CD1 HD13 sing N N 238 LEU CD2 HD21 sing N N 239 LEU CD2 HD22 sing N N 240 LEU CD2 HD23 sing N N 241 LEU OXT HXT sing N N 242 LYS N CA sing N N 243 LYS N H sing N N 244 LYS N H2 sing N N 245 LYS CA C sing N N 246 LYS CA CB sing N N 247 LYS CA HA sing N N 248 LYS C O doub N N 249 LYS C OXT sing N N 250 LYS CB CG sing N N 251 LYS CB HB2 sing N N 252 LYS CB HB3 sing N N 253 LYS CG CD sing N N 254 LYS CG HG2 sing N N 255 LYS CG HG3 sing N N 256 LYS CD CE sing N N 257 LYS CD HD2 sing N N 258 LYS CD HD3 sing N N 259 LYS CE NZ sing N N 260 LYS CE HE2 sing N N 261 LYS CE HE3 sing N N 262 LYS NZ HZ1 sing N N 263 LYS NZ HZ2 sing N N 264 LYS NZ HZ3 sing N N 265 LYS OXT HXT sing N N 266 MSE N CA sing N N 267 MSE N H sing N N 268 MSE N H2 sing N N 269 MSE CA C sing N N 270 MSE CA CB sing N N 271 MSE CA HA sing N N 272 MSE C O doub N N 273 MSE C OXT sing N N 274 MSE OXT HXT sing N N 275 MSE CB CG sing N N 276 MSE CB HB2 sing N N 277 MSE CB HB3 sing N N 278 MSE CG SE sing N N 279 MSE CG HG2 sing N N 280 MSE CG HG3 sing N N 281 MSE SE CE sing N N 282 MSE CE HE1 sing N N 283 MSE CE HE2 sing N N 284 MSE CE HE3 sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TRP N CA sing N N 355 TRP N H sing N N 356 TRP N H2 sing N N 357 TRP CA C sing N N 358 TRP CA CB sing N N 359 TRP CA HA sing N N 360 TRP C O doub N N 361 TRP C OXT sing N N 362 TRP CB CG sing N N 363 TRP CB HB2 sing N N 364 TRP CB HB3 sing N N 365 TRP CG CD1 doub Y N 366 TRP CG CD2 sing Y N 367 TRP CD1 NE1 sing Y N 368 TRP CD1 HD1 sing N N 369 TRP CD2 CE2 doub Y N 370 TRP CD2 CE3 sing Y N 371 TRP NE1 CE2 sing Y N 372 TRP NE1 HE1 sing N N 373 TRP CE2 CZ2 sing Y N 374 TRP CE3 CZ3 doub Y N 375 TRP CE3 HE3 sing N N 376 TRP CZ2 CH2 doub Y N 377 TRP CZ2 HZ2 sing N N 378 TRP CZ3 CH2 sing Y N 379 TRP CZ3 HZ3 sing N N 380 TRP CH2 HH2 sing N N 381 TRP OXT HXT sing N N 382 TYR N CA sing N N 383 TYR N H sing N N 384 TYR N H2 sing N N 385 TYR CA C sing N N 386 TYR CA CB sing N N 387 TYR CA HA sing N N 388 TYR C O doub N N 389 TYR C OXT sing N N 390 TYR CB CG sing N N 391 TYR CB HB2 sing N N 392 TYR CB HB3 sing N N 393 TYR CG CD1 doub Y N 394 TYR CG CD2 sing Y N 395 TYR CD1 CE1 sing Y N 396 TYR CD1 HD1 sing N N 397 TYR CD2 CE2 doub Y N 398 TYR CD2 HD2 sing N N 399 TYR CE1 CZ doub Y N 400 TYR CE1 HE1 sing N N 401 TYR CE2 CZ sing Y N 402 TYR CE2 HE2 sing N N 403 TYR CZ OH sing N N 404 TYR OH HH sing N N 405 TYR OXT HXT sing N N 406 VAL N CA sing N N 407 VAL N H sing N N 408 VAL N H2 sing N N 409 VAL CA C sing N N 410 VAL CA CB sing N N 411 VAL CA HA sing N N 412 VAL C O doub N N 413 VAL C OXT sing N N 414 VAL CB CG1 sing N N 415 VAL CB CG2 sing N N 416 VAL CB HB sing N N 417 VAL CG1 HG11 sing N N 418 VAL CG1 HG12 sing N N 419 VAL CG1 HG13 sing N N 420 VAL CG2 HG21 sing N N 421 VAL CG2 HG22 sing N N 422 VAL CG2 HG23 sing N N 423 VAL OXT HXT sing N N 424 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-TRIPHOSPHATE" ATP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3H74 _pdbx_initial_refinement_model.details ? #