HEADER LIGASE 17-JUL-09 3ICA TITLE THE CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF A PHENYLALANYL-TRNA TITLE 2 SYNTHETASE FROM PORPHYROMONAS GINGIVALIS W83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 503-712; COMPND 5 SYNONYM: PHENYLALANINE-TRNA LIGASE BETA CHAIN, PHERS; COMPND 6 EC: 6.1.1.20; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 STRAIN: W83; SOURCE 5 GENE: PG_0099, PHET, PORPHYROMONAS GINGIVALIS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC61692.1, PORPHYROMONAS GINGIVALIS, PHENYLALANYL-TRNA SYNTHETASE, KEYWDS 2 BETA SUBUNIT, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, AMINOACYL- KEYWDS 4 TRNA SYNTHETASE, ATP-BINDING, LIGASE, MAGNESIUM, METAL-BINDING, KEYWDS 5 NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, RNA-BINDING, TRNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.FAN,A.SATHER,L.KEIGHER,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-NOV-17 3ICA 1 REMARK REVDAT 2 13-JUL-11 3ICA 1 VERSN REVDAT 1 28-JUL-09 3ICA 0 JRNL AUTH Y.FAN,A.SATHER,L.KEIGHER,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF A JRNL TITL 2 PHENYLALANYL-TRNA SYNTHETASE FROM PORPHYROMONAS GINGIVALIS JRNL TITL 3 W83 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -3.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.559 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3505 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4724 ; 1.460 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 6.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;37.256 ;23.494 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;16.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2608 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3350 ; 1.668 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 2.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1374 ; 3.655 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ICA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.5530 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.214 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS PH8.5, 30% V/V REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.13300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.86250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.86250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 192.19950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.86250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.86250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.06650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.86250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.86250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 192.19950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.86250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.86250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.06650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 128.13300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 ASN A 123 REMARK 465 SER A 124 REMARK 465 TRP A 125 REMARK 465 ALA A 126 REMARK 465 HIS A 127 REMARK 465 SER B -2 REMARK 465 ASN B 123 REMARK 465 SER B 124 REMARK 465 TRP B 125 REMARK 465 ALA B 126 REMARK 465 HIS B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 59 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 59 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 56 11.25 -146.23 REMARK 500 ARG A 75 0.67 -59.25 REMARK 500 SER A 186 139.35 -36.50 REMARK 500 GLN A 197 148.68 -176.17 REMARK 500 GLU B 100 -108.22 -125.37 REMARK 500 ALA B 104 -128.77 -97.23 REMARK 500 GLU B 130 109.09 -58.54 REMARK 500 GLU B 196 31.13 -93.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61692.1 RELATED DB: TARGETDB DBREF 3ICA A 1 210 UNP Q7MXR4 SYFB_PORGI 503 712 DBREF 3ICA B 1 210 UNP Q7MXR4 SYFB_PORGI 503 712 SEQADV 3ICA SER A -2 UNP Q7MXR4 EXPRESSION TAG SEQADV 3ICA ASN A -1 UNP Q7MXR4 EXPRESSION TAG SEQADV 3ICA ALA A 0 UNP Q7MXR4 EXPRESSION TAG SEQADV 3ICA SER B -2 UNP Q7MXR4 EXPRESSION TAG SEQADV 3ICA ASN B -1 UNP Q7MXR4 EXPRESSION TAG SEQADV 3ICA ALA B 0 UNP Q7MXR4 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA ASP ARG ARG TYR LYS TRP GLN THR VAL VAL SEQRES 2 A 213 SER GLU GLN LEU VAL GLY ALA GLY PHE ASN GLU ILE LEU SEQRES 3 A 213 ASN ASN SER LEU THR ALA GLY SER TYR TYR GLU GLY LEU SEQRES 4 A 213 LYS SER HIS PRO ARG GLU MSE ALA VAL GLU LEU MSE ASN SEQRES 5 A 213 PRO LEU SER GLN GLU LEU ASN CYS MSE ARG GLN THR LEU SEQRES 6 A 213 LEU PHE GLY GLY LEU GLU THR LEU SER HIS ASN LEU ARG SEQRES 7 A 213 ARG LYS HIS LEU SER LEU TYR LEU PHE GLU TRP GLY LYS SEQRES 8 A 213 CYS TYR ARG PHE HIS ALA ALA LYS ARG THR ASP GLU THR SEQRES 9 A 213 PRO LEU ALA ALA TYR ALA GLU ASP ASP ARG LEU GLY ILE SEQRES 10 A 213 TRP ILE CYS GLY GLN ARG VAL HIS ASN SER TRP ALA HIS SEQRES 11 A 213 PRO GLU GLU PRO THR SER VAL PHE GLU LEU LYS ALA VAL SEQRES 12 A 213 VAL GLU GLN VAL LEU CYS ARG VAL GLY ILE GLU THR GLY SEQRES 13 A 213 ALA TYR THR LEU LYS THR ALA ASP ASN ASP LEU TYR ALA SEQRES 14 A 213 SER ALA MSE GLU VAL LYS THR ARG SER GLY LYS LEU LEU SEQRES 15 A 213 GLY THR PHE GLY THR VAL SER THR GLU LEU ILE LYS ARG SEQRES 16 A 213 PHE GLU ILE GLU GLN PRO VAL TYR PHE ALA GLU LEU LEU SEQRES 17 A 213 TRP ASP ALA LEU MSE SEQRES 1 B 213 SER ASN ALA ASP ARG ARG TYR LYS TRP GLN THR VAL VAL SEQRES 2 B 213 SER GLU GLN LEU VAL GLY ALA GLY PHE ASN GLU ILE LEU SEQRES 3 B 213 ASN ASN SER LEU THR ALA GLY SER TYR TYR GLU GLY LEU SEQRES 4 B 213 LYS SER HIS PRO ARG GLU MSE ALA VAL GLU LEU MSE ASN SEQRES 5 B 213 PRO LEU SER GLN GLU LEU ASN CYS MSE ARG GLN THR LEU SEQRES 6 B 213 LEU PHE GLY GLY LEU GLU THR LEU SER HIS ASN LEU ARG SEQRES 7 B 213 ARG LYS HIS LEU SER LEU TYR LEU PHE GLU TRP GLY LYS SEQRES 8 B 213 CYS TYR ARG PHE HIS ALA ALA LYS ARG THR ASP GLU THR SEQRES 9 B 213 PRO LEU ALA ALA TYR ALA GLU ASP ASP ARG LEU GLY ILE SEQRES 10 B 213 TRP ILE CYS GLY GLN ARG VAL HIS ASN SER TRP ALA HIS SEQRES 11 B 213 PRO GLU GLU PRO THR SER VAL PHE GLU LEU LYS ALA VAL SEQRES 12 B 213 VAL GLU GLN VAL LEU CYS ARG VAL GLY ILE GLU THR GLY SEQRES 13 B 213 ALA TYR THR LEU LYS THR ALA ASP ASN ASP LEU TYR ALA SEQRES 14 B 213 SER ALA MSE GLU VAL LYS THR ARG SER GLY LYS LEU LEU SEQRES 15 B 213 GLY THR PHE GLY THR VAL SER THR GLU LEU ILE LYS ARG SEQRES 16 B 213 PHE GLU ILE GLU GLN PRO VAL TYR PHE ALA GLU LEU LEU SEQRES 17 B 213 TRP ASP ALA LEU MSE MODRES 3ICA MSE A 43 MET SELENOMETHIONINE MODRES 3ICA MSE A 48 MET SELENOMETHIONINE MODRES 3ICA MSE A 58 MET SELENOMETHIONINE MODRES 3ICA MSE A 169 MET SELENOMETHIONINE MODRES 3ICA MSE A 210 MET SELENOMETHIONINE MODRES 3ICA MSE B 43 MET SELENOMETHIONINE MODRES 3ICA MSE B 48 MET SELENOMETHIONINE MODRES 3ICA MSE B 58 MET SELENOMETHIONINE MODRES 3ICA MSE B 169 MET SELENOMETHIONINE MODRES 3ICA MSE B 210 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 48 8 HET MSE A 58 8 HET MSE A 169 8 HET MSE A 210 8 HET MSE B 43 8 HET MSE B 48 8 HET MSE B 58 8 HET MSE B 169 8 HET MSE B 210 9 HET GOL A 211 6 HET GOL A 212 6 HET GOL A 213 6 HET GOL A 214 6 HET GOL A 215 6 HET GOL A 216 6 HET GOL A 217 6 HET TAM B 211 11 HET GOL B 212 6 HET GOL B 213 6 HET GOL B 214 6 HET GOL B 215 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 11(C3 H8 O3) FORMUL 10 TAM C7 H17 N O3 FORMUL 15 HOH *161(H2 O) HELIX 1 1 ASN A -1 ALA A 17 1 19 HELIX 2 2 SER A 31 GLU A 34 5 4 HELIX 3 3 PRO A 40 ALA A 44 5 5 HELIX 4 4 LEU A 62 ARG A 75 1 14 HELIX 5 5 SER A 133 VAL A 148 1 16 HELIX 6 6 GLU A 151 GLY A 153 5 3 HELIX 7 7 SER A 186 PHE A 193 1 8 HELIX 8 8 TRP A 206 MSE A 210 1 5 HELIX 9 9 ASN B -1 ALA B 17 1 19 HELIX 10 10 ALA B 29 GLU B 34 5 6 HELIX 11 11 PRO B 40 ALA B 44 5 5 HELIX 12 12 LEU B 62 ARG B 76 1 15 HELIX 13 13 SER B 133 VAL B 148 1 16 HELIX 14 14 GLU B 151 GLY B 153 5 3 HELIX 15 15 SER B 186 PHE B 193 1 8 HELIX 16 16 TRP B 206 MSE B 210 1 5 SHEET 1 A 7 ASN A 20 GLU A 21 0 SHEET 2 A 7 SER A 80 HIS A 93 1 O TYR A 82 N ASN A 20 SHEET 3 A 7 ALA A 105 GLY A 118 -1 O TRP A 115 N LEU A 83 SHEET 4 A 7 VAL A 199 LEU A 205 -1 O LEU A 204 N LEU A 112 SHEET 5 A 7 LEU A 178 VAL A 185 -1 N THR A 181 O GLU A 203 SHEET 6 A 7 TYR A 165 THR A 173 -1 N VAL A 171 O GLY A 180 SHEET 7 A 7 TYR A 155 THR A 159 -1 N LYS A 158 O GLU A 170 SHEET 1 B 2 LEU A 27 ALA A 29 0 SHEET 2 B 2 LEU A 55 MSE A 58 -1 O CYS A 57 N THR A 28 SHEET 1 C 7 ASN B 20 GLU B 21 0 SHEET 2 C 7 SER B 80 ALA B 94 1 O TYR B 82 N ASN B 20 SHEET 3 C 7 LEU B 103 GLY B 118 -1 O ALA B 107 N ARG B 91 SHEET 4 C 7 VAL B 199 LEU B 205 -1 O LEU B 204 N LEU B 112 SHEET 5 C 7 LEU B 178 VAL B 185 -1 N VAL B 185 O VAL B 199 SHEET 6 C 7 TYR B 165 THR B 173 -1 N VAL B 171 O LEU B 179 SHEET 7 C 7 TYR B 155 THR B 159 -1 N LYS B 158 O GLU B 170 SHEET 1 D 2 LEU B 27 THR B 28 0 SHEET 2 D 2 CYS B 57 MSE B 58 -1 O CYS B 57 N THR B 28 LINK C AGLU A 42 N MSE A 43 1555 1555 1.33 LINK C BGLU A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N ALA A 44 1555 1555 1.33 LINK C LEU A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N ASN A 49 1555 1555 1.33 LINK C CYS A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N ARG A 59 1555 1555 1.33 LINK C ALA A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N GLU A 170 1555 1555 1.33 LINK C LEU A 209 N MSE A 210 1555 1555 1.33 LINK C GLU B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N ALA B 44 1555 1555 1.34 LINK C LEU B 47 N MSE B 48 1555 1555 1.32 LINK C MSE B 48 N ASN B 49 1555 1555 1.32 LINK C CYS B 57 N MSE B 58 1555 1555 1.32 LINK C MSE B 58 N ARG B 59 1555 1555 1.33 LINK C ALA B 168 N MSE B 169 1555 1555 1.32 LINK C MSE B 169 N GLU B 170 1555 1555 1.33 LINK C LEU B 209 N MSE B 210 1555 1555 1.33 SITE 1 AC1 6 ASN A 24 ASN A 25 LEU A 27 GLU A 68 SITE 2 AC1 6 HOH A 218 HOH A 253 SITE 1 AC2 4 VAL B 134 PHE B 135 HOH B 216 HOH B 268 SITE 1 AC3 7 ARG A 3 GLN A 7 GLY A 87 LYS A 88 SITE 2 AC3 7 ASP A 110 HOH A 293 TYR B 106 SITE 1 AC4 4 ILE A 22 LEU A 23 ASN A 24 THR A 69 SITE 1 AC5 7 TYR A 4 GLN A 7 THR A 8 SER A 11 SITE 2 AC5 7 GLU A 21 TRP A 86 HOH A 281 SITE 1 AC6 4 LYS A 5 TRP A 6 VAL A 9 ARG A 147 SITE 1 AC7 5 THR A 173 LYS A 177 ALA A 208 LEU A 209 SITE 2 AC7 5 HOH A 276 SITE 1 AC8 8 TYR A 106 HOH A 222 GLN B 7 TRP B 86 SITE 2 AC8 8 GLY B 87 ASP B 110 ARG B 111 GOL B 214 SITE 1 AC9 5 ASN B 24 ASN B 25 LEU B 27 GLU B 68 SITE 2 AC9 5 HOH B 217 SITE 1 BC1 10 ASN B 24 ASN B 25 ARG B 59 THR B 61 SITE 2 BC1 10 LEU B 62 PHE B 64 GLY B 65 GLY B 66 SITE 3 BC1 10 GLU B 85 HOH B 278 SITE 1 BC2 8 VAL A 45 GLU A 46 MSE A 48 TYR B 4 SITE 2 BC2 8 GLN B 7 SER B 11 GLU B 21 TAM B 211 SITE 1 BC3 5 ARG A 120 PHE A 135 GLU A 136 LEU B 157 SITE 2 BC3 5 MSE B 169 CRYST1 59.725 59.725 256.266 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003902 0.00000