HEADER PROTEIN BINDING, TRANSFERASE 02-AUG-09 3IIJ TITLE THE STRUCTURE OF HCINAP-ADP COMPLEX AT 1.76 ANGSTROMS RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN, TAF9 RNA COMPND 5 POLYMERASE II, TATA BOX BINDING PROTEIN (TBP)-ASSOCIATED FACTOR, COMPND 6 32KDA, ISOFORM CRA_B, HUMAN ADENYLATE KINASE 6; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CINAP, TAF9, HCG_37060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3 KEYWDS ALPHA AND BETA PROTEINS (A/B), PROTEIN BINDING, TRANSFERASE, KEYWDS 2 PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.ZOGRAPHOS,C.E.DRAKOU,D.D.LEONIDAS REVDAT 5 06-SEP-23 3IIJ 1 REMARK SEQADV REVDAT 4 18-JAN-12 3IIJ 1 JRNL REVDAT 3 23-NOV-11 3IIJ 1 JRNL REVDAT 2 05-OCT-11 3IIJ 1 JRNL REMARK VERSN REVDAT 1 06-OCT-10 3IIJ 0 JRNL AUTH C.E.DRAKOU,A.MALEKKOU,J.M.HAYES,C.W.LEDERER,D.D.LEONIDAS, JRNL AUTH 2 N.G.OIKONOMAKOS,A.I.LAMOND,N.SANTAMA,S.E.ZOGRAPHOS JRNL TITL HCINAP IS AN ATYPICAL MAMMALIAN NUCLEAR ADENYLATE KINASE JRNL TITL 2 WITH AN ATPASE MOTIF: STRUCTURAL AND FUNCTIONAL STUDIES. JRNL REF PROTEINS V. 80 206 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22038794 JRNL DOI 10.1002/PROT.23186 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 30007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1547 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2110 ; 1.128 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 180 ; 4.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;37.315 ;25.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;12.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 223 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1182 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 883 ; 0.454 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1441 ; 0.876 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 664 ; 1.448 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 667 ; 2.393 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1610 -56.5592 8.9306 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.4348 REMARK 3 T33: 0.4787 T12: 0.0673 REMARK 3 T13: -0.1676 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 13.8130 L22: 7.5743 REMARK 3 L33: 9.4309 L12: -1.3811 REMARK 3 L13: 10.0145 L23: 3.0150 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.3691 S13: -0.1618 REMARK 3 S21: -0.9832 S22: -0.7216 S23: 1.6303 REMARK 3 S31: -0.5592 S32: -0.6840 S33: 0.7462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1153 -54.1185 -1.0799 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.1392 REMARK 3 T33: 0.1279 T12: -0.0135 REMARK 3 T13: -0.0102 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.0882 L22: 1.0309 REMARK 3 L33: 1.2113 L12: 0.4062 REMARK 3 L13: -0.9195 L23: -0.3948 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.1463 S13: -0.1286 REMARK 3 S21: 0.0023 S22: -0.0449 S23: 0.0677 REMARK 3 S31: 0.0144 S32: -0.0170 S33: 0.0471 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7130 -55.9728 -4.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.1545 REMARK 3 T33: 0.1311 T12: -0.0348 REMARK 3 T13: -0.0331 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.8465 L22: 6.1885 REMARK 3 L33: 1.6547 L12: 1.8132 REMARK 3 L13: -0.7836 L23: -1.6198 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.3066 S13: -0.1988 REMARK 3 S21: -0.0204 S22: -0.0488 S23: 0.1415 REMARK 3 S31: 0.1185 S32: -0.1709 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5114 -39.6215 -11.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1925 REMARK 3 T33: 0.1071 T12: 0.0131 REMARK 3 T13: -0.0371 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 2.7020 L22: 9.9189 REMARK 3 L33: 8.5388 L12: 3.1579 REMARK 3 L13: -0.8472 L23: 1.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.2577 S13: -0.1053 REMARK 3 S21: -0.4883 S22: -0.0130 S23: -0.3402 REMARK 3 S31: 0.0270 S32: -0.0430 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0220 -35.7260 -13.1507 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.8300 REMARK 3 T33: 1.2562 T12: 0.0987 REMARK 3 T13: 0.1574 T23: -0.1888 REMARK 3 L TENSOR REMARK 3 L11: 4.8596 L22: 3.7805 REMARK 3 L33: 13.2817 L12: -1.8813 REMARK 3 L13: 8.0202 L23: -3.4480 REMARK 3 S TENSOR REMARK 3 S11: 0.3754 S12: 1.4880 S13: -0.4913 REMARK 3 S21: -0.3468 S22: 0.1399 S23: -1.4037 REMARK 3 S31: 0.5321 S32: 2.4197 S33: -0.5154 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2585 -40.2874 0.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1108 REMARK 3 T33: 0.1333 T12: 0.0530 REMARK 3 T13: -0.0169 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.9894 L22: 7.2455 REMARK 3 L33: 7.1413 L12: 2.7045 REMARK 3 L13: -2.9898 L23: -4.9436 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.2437 S13: 0.3567 REMARK 3 S21: 0.1895 S22: 0.0284 S23: 0.5149 REMARK 3 S31: -0.4373 S32: -0.2661 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0963 -48.1444 3.4831 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1199 REMARK 3 T33: 0.1048 T12: -0.0155 REMARK 3 T13: -0.0034 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.9766 L22: 0.8787 REMARK 3 L33: 0.8848 L12: -0.1372 REMARK 3 L13: -0.1129 L23: -0.3385 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.0646 S13: 0.0693 REMARK 3 S21: 0.1204 S22: -0.0162 S23: 0.0386 REMARK 3 S31: -0.1504 S32: -0.0186 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8990 -56.5523 -11.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1871 REMARK 3 T33: 0.1043 T12: -0.0019 REMARK 3 T13: 0.0159 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 8.9923 L22: 1.8333 REMARK 3 L33: 3.8236 L12: -0.8466 REMARK 3 L13: -0.1103 L23: -1.4713 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: 0.8481 S13: -0.2959 REMARK 3 S21: -0.2304 S22: -0.0603 S23: -0.1481 REMARK 3 S31: 0.0847 S32: -0.0499 S33: 0.1135 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9449 -46.4640 -14.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.3743 REMARK 3 T33: 0.1562 T12: -0.0598 REMARK 3 T13: 0.0226 T23: 0.1386 REMARK 3 L TENSOR REMARK 3 L11: 5.8296 L22: 3.3528 REMARK 3 L33: 9.7578 L12: 0.4007 REMARK 3 L13: 4.2253 L23: 4.1553 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.9230 S13: 0.3432 REMARK 3 S21: -0.4727 S22: 0.1264 S23: -0.0047 REMARK 3 S31: -0.5035 S32: 0.0442 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 47.8213 -47.9667 0.6375 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.1450 REMARK 3 T33: 0.1536 T12: -0.0159 REMARK 3 T13: -0.0205 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 7.0244 L22: 2.5537 REMARK 3 L33: 5.8630 L12: -1.8726 REMARK 3 L13: -4.4768 L23: 3.2411 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: -0.2234 S13: 0.2022 REMARK 3 S21: 0.0483 S22: -0.0123 S23: -0.3177 REMARK 3 S31: -0.0303 S32: 0.1291 S33: -0.0994 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0907 -57.8600 4.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.1244 REMARK 3 T33: 0.1293 T12: 0.0065 REMARK 3 T13: -0.0133 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.8105 L22: 4.6103 REMARK 3 L33: 3.3257 L12: -0.0313 REMARK 3 L13: -0.6835 L23: 1.7126 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -0.2008 S13: -0.3487 REMARK 3 S21: 0.2124 S22: 0.0412 S23: -0.1280 REMARK 3 S31: 0.1500 S32: 0.2736 S33: 0.1003 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8998 -62.1053 10.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.1043 REMARK 3 T33: 0.1350 T12: -0.0464 REMARK 3 T13: -0.0069 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 5.0648 L22: 3.5997 REMARK 3 L33: 3.8821 L12: -1.1311 REMARK 3 L13: -2.2611 L23: 2.2627 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.2814 S13: -0.1904 REMARK 3 S21: 0.2871 S22: 0.0049 S23: -0.1462 REMARK 3 S31: 0.1287 S32: 0.0841 S33: -0.0291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11665 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH SAGITTAL FOCUSSING REMARK 200 OPTICS : RH COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 17.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49900 REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RKB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.5 M LI2SO4, 0.2 REMARK 280 M NACL, 0.5 MM DTT, 25 MM MGCL2, 2 MM ADP, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.27933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.55867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.91900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.19833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.63967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 79 37.84 -89.47 REMARK 500 CYS A 81 -6.70 -153.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 177 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKB RELATED DB: PDB REMARK 900 THE STRUCTURE OF ADRENAL GLAND PROTEIN AD-004 REMARK 900 RELATED ID: 3IIK RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-SO4 COMPLEX AT 1.95 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3IIL RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-MGADP-PI COMPLEX AT 2.0 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3IIM RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-DADP COMPLEX AT 2.0 ANGSTROMS RESOLUTION DBREF 3IIJ A 1 172 UNP Q5F2S9 Q5F2S9_HUMAN 1 172 SEQADV 3IIJ GLY A -7 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ PRO A -6 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ LEU A -5 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ GLY A -4 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ SER A -3 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ PRO A -2 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ GLU A -1 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIJ PHE A 0 UNP Q5F2S9 EXPRESSION TAG SEQRES 1 A 180 GLY PRO LEU GLY SER PRO GLU PHE MET LEU LEU PRO ASN SEQRES 2 A 180 ILE LEU LEU THR GLY THR PRO GLY VAL GLY LYS THR THR SEQRES 3 A 180 LEU GLY LYS GLU LEU ALA SER LYS SER GLY LEU LYS TYR SEQRES 4 A 180 ILE ASN VAL GLY ASP LEU ALA ARG GLU GLU GLN LEU TYR SEQRES 5 A 180 ASP GLY TYR ASP GLU GLU TYR ASP CYS PRO ILE LEU ASP SEQRES 6 A 180 GLU ASP ARG VAL VAL ASP GLU LEU ASP ASN GLN MET ARG SEQRES 7 A 180 GLU GLY GLY VAL ILE VAL ASP TYR HIS GLY CYS ASP PHE SEQRES 8 A 180 PHE PRO GLU ARG TRP PHE HIS ILE VAL PHE VAL LEU ARG SEQRES 9 A 180 THR ASP THR ASN VAL LEU TYR GLU ARG LEU GLU THR ARG SEQRES 10 A 180 GLY TYR ASN GLU LYS LYS LEU THR ASP ASN ILE GLN CYS SEQRES 11 A 180 GLU ILE PHE GLN VAL LEU TYR GLU GLU ALA THR ALA SER SEQRES 12 A 180 TYR LYS GLU GLU ILE VAL HIS GLN LEU PRO SER ASN LYS SEQRES 13 A 180 PRO GLU GLU LEU GLU ASN ASN VAL ASP GLN ILE LEU LYS SEQRES 14 A 180 TRP ILE GLU GLN TRP ILE LYS ASP HIS ASN SER HET ADP A 173 27 HET SO4 A 174 5 HET SO4 A 175 5 HET SO4 A 176 5 HET SO4 A 177 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *190(H2 O) HELIX 1 1 GLY A 15 GLY A 28 1 14 HELIX 2 2 VAL A 34 GLN A 42 1 9 HELIX 3 3 ASP A 57 GLY A 72 1 16 HELIX 4 4 PRO A 85 PHE A 89 5 5 HELIX 5 5 ASP A 98 ARG A 109 1 12 HELIX 6 6 ASN A 112 PHE A 125 1 14 HELIX 7 7 GLN A 126 TYR A 136 1 11 HELIX 8 8 LYS A 137 GLU A 139 5 3 HELIX 9 9 LYS A 148 HIS A 170 1 23 SHEET 1 A 5 LYS A 30 ASN A 33 0 SHEET 2 A 5 VAL A 74 ASP A 77 1 O ILE A 75 N LYS A 30 SHEET 3 A 5 ILE A 6 THR A 9 1 N LEU A 8 O VAL A 76 SHEET 4 A 5 ILE A 91 ARG A 96 1 O PHE A 93 N LEU A 7 SHEET 5 A 5 VAL A 141 PRO A 145 1 O HIS A 142 N VAL A 94 SHEET 1 B 2 TYR A 44 ASP A 48 0 SHEET 2 B 2 CYS A 53 LEU A 56 -1 O CYS A 53 N ASP A 48 SITE 1 AC1 19 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 19 THR A 17 THR A 18 ARG A 105 ARG A 109 SITE 3 AC1 19 SER A 146 ASN A 147 LYS A 148 PRO A 149 SITE 4 AC1 19 LEU A 152 HOH A 193 HOH A 198 HOH A 209 SITE 5 AC1 19 HOH A 212 HOH A 213 HOH A 216 SITE 1 AC2 6 TYR A 129 VAL A 141 HIS A 142 GLN A 143 SITE 2 AC2 6 HOH A 285 HOH A 295 SITE 1 AC3 3 GLU A 138 GLU A 139 HOH A 361 SITE 1 AC4 3 ASN A 112 GLU A 113 HOH A 339 SITE 1 AC5 3 ILE A 91 GLN A 158 HOH A 233 CRYST1 99.144 99.144 57.838 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010086 0.005823 0.000000 0.00000 SCALE2 0.000000 0.011647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017290 0.00000