data_3IN6 # _entry.id 3IN6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IN6 pdb_00003in6 10.2210/pdb3in6/pdb RCSB RCSB054620 ? ? WWPDB D_1000054620 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 380043 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3IN6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of FMN-binding protein (YP_752906.1) from Syntrophomonas wolfei str. Goettingen at 2.12 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3IN6 _cell.length_a 103.108 _cell.length_b 103.108 _cell.length_c 59.786 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IN6 _symmetry.Int_Tables_number 94 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FMN-binding protein' 17184.330 2 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 41 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)LESVRKEWLEI(MSE)DRELLEKARSLINANYISTTLSTVDRNYEVNIAVISVLE(MSE)IGDDTIICARFGAD KTYANLKETGKGVF(MSE)VLLTDNDKSKDGIRVYVELSADLQEGEYFDRIKKRLDNTTYKNFPLKNCLVFKIVKILPVS LLRK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMLESVRKEWLEIMDRELLEKARSLINANYISTTLSTVDRNYEVNIAVISVLEMIGDDTIICARFGADKTYANLKETGKG VFMVLLTDNDKSKDGIRVYVELSADLQEGEYFDRIKKRLDNTTYKNFPLKNCLVFKIVKILPVSLLRK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 380043 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 LEU n 1 4 GLU n 1 5 SER n 1 6 VAL n 1 7 ARG n 1 8 LYS n 1 9 GLU n 1 10 TRP n 1 11 LEU n 1 12 GLU n 1 13 ILE n 1 14 MSE n 1 15 ASP n 1 16 ARG n 1 17 GLU n 1 18 LEU n 1 19 LEU n 1 20 GLU n 1 21 LYS n 1 22 ALA n 1 23 ARG n 1 24 SER n 1 25 LEU n 1 26 ILE n 1 27 ASN n 1 28 ALA n 1 29 ASN n 1 30 TYR n 1 31 ILE n 1 32 SER n 1 33 THR n 1 34 THR n 1 35 LEU n 1 36 SER n 1 37 THR n 1 38 VAL n 1 39 ASP n 1 40 ARG n 1 41 ASN n 1 42 TYR n 1 43 GLU n 1 44 VAL n 1 45 ASN n 1 46 ILE n 1 47 ALA n 1 48 VAL n 1 49 ILE n 1 50 SER n 1 51 VAL n 1 52 LEU n 1 53 GLU n 1 54 MSE n 1 55 ILE n 1 56 GLY n 1 57 ASP n 1 58 ASP n 1 59 THR n 1 60 ILE n 1 61 ILE n 1 62 CYS n 1 63 ALA n 1 64 ARG n 1 65 PHE n 1 66 GLY n 1 67 ALA n 1 68 ASP n 1 69 LYS n 1 70 THR n 1 71 TYR n 1 72 ALA n 1 73 ASN n 1 74 LEU n 1 75 LYS n 1 76 GLU n 1 77 THR n 1 78 GLY n 1 79 LYS n 1 80 GLY n 1 81 VAL n 1 82 PHE n 1 83 MSE n 1 84 VAL n 1 85 LEU n 1 86 LEU n 1 87 THR n 1 88 ASP n 1 89 ASN n 1 90 ASP n 1 91 LYS n 1 92 SER n 1 93 LYS n 1 94 ASP n 1 95 GLY n 1 96 ILE n 1 97 ARG n 1 98 VAL n 1 99 TYR n 1 100 VAL n 1 101 GLU n 1 102 LEU n 1 103 SER n 1 104 ALA n 1 105 ASP n 1 106 LEU n 1 107 GLN n 1 108 GLU n 1 109 GLY n 1 110 GLU n 1 111 TYR n 1 112 PHE n 1 113 ASP n 1 114 ARG n 1 115 ILE n 1 116 LYS n 1 117 LYS n 1 118 ARG n 1 119 LEU n 1 120 ASP n 1 121 ASN n 1 122 THR n 1 123 THR n 1 124 TYR n 1 125 LYS n 1 126 ASN n 1 127 PHE n 1 128 PRO n 1 129 LEU n 1 130 LYS n 1 131 ASN n 1 132 CYS n 1 133 LEU n 1 134 VAL n 1 135 PHE n 1 136 LYS n 1 137 ILE n 1 138 VAL n 1 139 LYS n 1 140 ILE n 1 141 LEU n 1 142 PRO n 1 143 VAL n 1 144 SER n 1 145 LEU n 1 146 LEU n 1 147 ARG n 1 148 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Swol_0183, YP_752906.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Goettingen _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophomonas wolfei subsp. wolfei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 335541 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0B0G9_SYNWW _struct_ref.pdbx_db_accession Q0B0G9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLESVRKEWLEIMDRELLEKARSLINANYISTTLSTVDRNYEVNIAVISVLEMIGDDTIICARFGADKTYANLKETGKGV FMVLLTDNDKSKDGIRVYVELSADLQEGEYFDRIKKRLDNTTYKNFPLKNCLVFKIVKILPVSLLRK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IN6 A 2 ? 148 ? Q0B0G9 1 ? 147 ? 1 147 2 1 3IN6 B 2 ? 148 ? Q0B0G9 1 ? 147 ? 1 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IN6 GLY A 1 ? UNP Q0B0G9 ? ? 'expression tag' 0 1 2 3IN6 GLY B 1 ? UNP Q0B0G9 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3IN6 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.29 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30.5000% 2-methyl-2,4-pentanediol, 0.1M sodium acetate pH 4.29, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-03-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97936 1.0 3 0.97922 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97936,0.97922 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3IN6 _reflns.d_resolution_high 2.12 _reflns.d_resolution_low 28.712 _reflns.number_obs 18788 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 16.010 _reflns.percent_possible_obs 99.500 _reflns.B_iso_Wilson_estimate 35.044 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 7.12 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.12 2.20 13800 ? 3674 0.554 2.5 ? ? ? ? ? 99.50 1 1 2.20 2.28 12044 ? 3141 0.461 3.0 ? ? ? ? ? 99.10 2 1 2.28 2.39 14213 ? 3692 0.385 3.6 ? ? ? ? ? 98.90 3 1 2.39 2.51 12709 ? 3303 0.289 4.7 ? ? ? ? ? 99.40 4 1 2.51 2.67 13592 ? 3530 0.200 6.7 ? ? ? ? ? 99.60 5 1 2.67 2.88 13648 ? 3537 0.142 9.4 ? ? ? ? ? 99.50 6 1 2.88 3.16 13141 ? 3396 0.085 14.7 ? ? ? ? ? 99.80 7 1 3.16 3.62 13641 ? 3533 0.046 25.4 ? ? ? ? ? 99.70 8 1 3.62 4.55 13429 ? 3477 0.027 39.5 ? ? ? ? ? 99.80 9 1 4.55 28.712 13623 ? 3538 0.020 49.8 ? ? ? ? ? 99.30 10 1 # _refine.entry_id 3IN6 _refine.ls_d_res_high 2.120 _refine.ls_d_res_low 28.712 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.540 _refine.ls_number_reflns_obs 18752 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.ENDOGENOUS FLAVIN MONONUCLEOTIDE(FMN) HAS BEEN MODELED AT THE PUTATIVE ACTIVE SITE BASED ON CLEAR ELECTRON DENSITY. 5.2,4-METHANEPENTANEDIOL (MPD) FROM THE CRYSTALLIZATION SOLUTION HAS BEEN MODELED IN THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_R_work 0.219 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.254 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 958 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.909 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.900 _refine.aniso_B[2][2] -2.900 _refine.aniso_B[3][3] 5.810 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.257 _refine.pdbx_overall_ESU_R_Free 0.202 _refine.overall_SU_ML 0.166 _refine.overall_SU_B 13.723 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 69.15 _refine.B_iso_min 2.88 _refine.occupancy_max 1.00 _refine.occupancy_min 0.40 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2290 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 2401 _refine_hist.d_res_high 2.120 _refine_hist.d_res_low 28.712 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2397 0.010 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1572 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3254 1.431 2.017 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3853 0.842 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 294 3.483 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 97 23.961 24.433 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 430 11.289 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 15 15.427 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 388 0.079 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2586 0.004 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 457 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1459 1.301 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 597 0.342 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2362 2.359 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 938 4.443 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 891 6.174 11.000 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1810 0.710 5.000 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 1810 3.080 10.000 2 ? ? ? # _refine_ls_shell.d_res_high 2.120 _refine_ls_shell.d_res_low 2.175 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.560 _refine_ls_shell.number_reflns_R_work 1282 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.305 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1348 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 6 A 5 A 146 ? . . . . . . . . 1 2 1 6 B 5 B 146 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3IN6 _struct.title 'Crystal structure of a fmn-binding protein (swol_0183) from syntrophomonas wolfei subsp. wolfei at 2.12 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, flavoprotein' _struct_keywords.pdbx_keywords FLAVOPROTEIN _struct_keywords.entry_id 3IN6 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ASN A 29 ? GLY A 0 ASN A 28 1 ? 29 HELX_P HELX_P2 2 ALA A 67 ? GLY A 78 ? ALA A 66 GLY A 77 1 ? 12 HELX_P HELX_P3 3 GLY A 109 ? ASN A 121 ? GLY A 108 ASN A 120 1 ? 13 HELX_P HELX_P4 4 THR A 122 ? PHE A 127 ? THR A 121 PHE A 126 5 ? 6 HELX_P HELX_P5 5 GLY B 1 ? ALA B 28 ? GLY B 0 ALA B 27 1 ? 28 HELX_P HELX_P6 6 ALA B 67 ? GLY B 78 ? ALA B 66 GLY B 77 1 ? 12 HELX_P HELX_P7 7 GLY B 109 ? ASN B 121 ? GLY B 108 ASN B 120 1 ? 13 HELX_P HELX_P8 8 THR B 122 ? PHE B 127 ? THR B 121 PHE B 126 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A LEU 3 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A ILE 13 C ? ? ? 1_555 A MSE 14 N ? ? A ILE 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 14 C ? ? ? 1_555 A ASP 15 N ? ? A MSE 13 A ASP 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A GLU 53 C ? ? ? 1_555 A MSE 54 N ? ? A GLU 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 54 C ? ? ? 1_555 A ILE 55 N ? ? A MSE 53 A ILE 54 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale both ? A PHE 82 C ? ? ? 1_555 A MSE 83 N ? ? A PHE 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? A MSE 83 C ? ? ? 1_555 A VAL 84 N ? ? A MSE 82 A VAL 83 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? B GLY 1 C ? ? ? 1_555 B MSE 2 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? B MSE 2 C ? ? ? 1_555 B LEU 3 N ? ? B MSE 1 B LEU 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale11 covale both ? B ILE 13 C ? ? ? 1_555 B MSE 14 N ? ? B ILE 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? B MSE 14 C ? ? ? 1_555 B ASP 15 N ? ? B MSE 13 B ASP 14 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? B GLU 53 C ? ? ? 1_555 B MSE 54 N ? ? B GLU 52 B MSE 53 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? B MSE 54 C ? ? ? 1_555 B ILE 55 N ? ? B MSE 53 B ILE 54 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? B PHE 82 C ? ? ? 1_555 B MSE 83 N ? ? B PHE 81 B MSE 82 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale16 covale both ? B MSE 83 C ? ? ? 1_555 B VAL 84 N ? ? B MSE 82 B VAL 83 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 44 ? VAL A 48 ? VAL A 43 VAL A 47 A 2 THR A 33 ? VAL A 38 ? THR A 32 VAL A 37 A 3 LYS A 79 ? THR A 87 ? LYS A 78 THR A 86 A 4 SER A 92 ? LEU A 106 ? SER A 91 LEU A 105 A 5 ASN A 131 ? LEU A 141 ? ASN A 130 LEU A 140 A 6 THR A 59 ? ARG A 64 ? THR A 58 ARG A 63 A 7 LEU A 52 ? ILE A 55 ? LEU A 51 ILE A 54 B 1 VAL B 44 ? VAL B 48 ? VAL B 43 VAL B 47 B 2 THR B 33 ? VAL B 38 ? THR B 32 VAL B 37 B 3 LYS B 79 ? THR B 87 ? LYS B 78 THR B 86 B 4 LYS B 93 ? LEU B 106 ? LYS B 92 LEU B 105 B 5 ASN B 131 ? PRO B 142 ? ASN B 130 PRO B 141 B 6 THR B 59 ? ARG B 64 ? THR B 58 ARG B 63 B 7 LEU B 52 ? ILE B 55 ? LEU B 51 ILE B 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 45 ? O ASN A 44 N THR A 37 ? N THR A 36 A 2 3 N THR A 34 ? N THR A 33 O MSE A 83 ? O MSE A 82 A 3 4 N LEU A 86 ? N LEU A 85 O ASP A 94 ? O ASP A 93 A 4 5 N ALA A 104 ? N ALA A 103 O VAL A 134 ? O VAL A 133 A 5 6 O PHE A 135 ? O PHE A 134 N ILE A 60 ? N ILE A 59 A 6 7 O ILE A 61 ? O ILE A 60 N GLU A 53 ? N GLU A 52 B 1 2 O ASN B 45 ? O ASN B 44 N THR B 37 ? N THR B 36 B 2 3 N SER B 36 ? N SER B 35 O VAL B 81 ? O VAL B 80 B 3 4 N PHE B 82 ? N PHE B 81 O VAL B 98 ? O VAL B 97 B 4 5 N SER B 103 ? N SER B 102 O VAL B 134 ? O VAL B 133 B 5 6 O PHE B 135 ? O PHE B 134 N ILE B 60 ? N ILE B 59 B 6 7 O ILE B 61 ? O ILE B 60 N GLU B 53 ? N GLU B 52 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 148 ? 20 'BINDING SITE FOR RESIDUE FMN A 148' AC2 Software A MPD 149 ? 5 'BINDING SITE FOR RESIDUE MPD A 149' AC3 Software B FMN 148 ? 19 'BINDING SITE FOR RESIDUE FMN B 148' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ILE A 31 ? ILE A 30 . ? 1_555 ? 2 AC1 20 ARG A 40 ? ARG A 39 . ? 7_555 ? 3 AC1 20 ASN A 45 ? ASN A 44 . ? 1_555 ? 4 AC1 20 ALA A 47 ? ALA A 46 . ? 1_555 ? 5 AC1 20 VAL A 48 ? VAL A 47 . ? 1_555 ? 6 AC1 20 ILE A 49 ? ILE A 48 . ? 1_555 ? 7 AC1 20 SER A 50 ? SER A 49 . ? 1_555 ? 8 AC1 20 VAL A 51 ? VAL A 50 . ? 1_555 ? 9 AC1 20 ALA A 63 ? ALA A 62 . ? 1_555 ? 10 AC1 20 PHE A 65 ? PHE A 64 . ? 1_555 ? 11 AC1 20 GLY A 66 ? GLY A 65 . ? 1_555 ? 12 AC1 20 ALA A 67 ? ALA A 66 . ? 1_555 ? 13 AC1 20 LYS A 69 ? LYS A 68 . ? 1_555 ? 14 AC1 20 THR A 70 ? THR A 69 . ? 1_555 ? 15 AC1 20 TYR A 124 ? TYR A 123 . ? 1_555 ? 16 AC1 20 LYS B 93 ? LYS B 92 . ? 1_555 ? 17 AC1 20 ARG B 97 ? ARG B 96 . ? 1_555 ? 18 AC1 20 SER B 144 ? SER B 143 . ? 1_555 ? 19 AC1 20 LEU B 145 ? LEU B 144 . ? 1_555 ? 20 AC1 20 LEU B 146 ? LEU B 145 . ? 1_555 ? 21 AC2 5 ASP A 15 ? ASP A 14 . ? 1_555 ? 22 AC2 5 ILE A 137 ? ILE A 136 . ? 1_555 ? 23 AC2 5 LYS A 139 ? LYS A 138 . ? 1_555 ? 24 AC2 5 ILE A 140 ? ILE A 139 . ? 1_555 ? 25 AC2 5 HOH F . ? HOH A 164 . ? 1_555 ? 26 AC3 19 ARG A 97 ? ARG A 96 . ? 1_555 ? 27 AC3 19 SER A 144 ? SER A 143 . ? 1_555 ? 28 AC3 19 LEU A 145 ? LEU A 144 . ? 1_555 ? 29 AC3 19 HOH F . ? HOH A 168 . ? 1_555 ? 30 AC3 19 ASN B 45 ? ASN B 44 . ? 1_555 ? 31 AC3 19 ALA B 47 ? ALA B 46 . ? 1_555 ? 32 AC3 19 VAL B 48 ? VAL B 47 . ? 1_555 ? 33 AC3 19 ILE B 49 ? ILE B 48 . ? 1_555 ? 34 AC3 19 SER B 50 ? SER B 49 . ? 1_555 ? 35 AC3 19 VAL B 51 ? VAL B 50 . ? 1_555 ? 36 AC3 19 ALA B 63 ? ALA B 62 . ? 1_555 ? 37 AC3 19 ARG B 64 ? ARG B 63 . ? 1_555 ? 38 AC3 19 PHE B 65 ? PHE B 64 . ? 1_555 ? 39 AC3 19 GLY B 66 ? GLY B 65 . ? 1_555 ? 40 AC3 19 ALA B 67 ? ALA B 66 . ? 1_555 ? 41 AC3 19 ASP B 68 ? ASP B 67 . ? 1_555 ? 42 AC3 19 LYS B 69 ? LYS B 68 . ? 1_555 ? 43 AC3 19 THR B 70 ? THR B 69 . ? 1_555 ? 44 AC3 19 TYR B 124 ? TYR B 123 . ? 1_555 ? # _atom_sites.entry_id 3IN6 _atom_sites.fract_transf_matrix[1][1] 0.009699 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016726 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 TRP 10 9 9 TRP TRP A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 MSE 14 13 13 MSE MSE A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 ASN 29 28 28 ASN ASN A . n A 1 30 TYR 30 29 29 TYR TYR A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 MSE 54 53 53 MSE MSE A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 CYS 62 61 61 CYS CYS A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 MSE 83 82 82 MSE MSE A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 LYS 91 90 90 LYS LYS A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 ARG 97 96 96 ARG ARG A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 ARG 118 117 117 ARG ARG A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 PHE 127 126 126 PHE PHE A . n A 1 128 PRO 128 127 127 PRO PRO A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 CYS 132 131 131 CYS CYS A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 PHE 135 134 134 PHE PHE A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 LEU 141 140 140 LEU LEU A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 SER 144 143 143 SER SER A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 LYS 148 147 ? ? ? A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 LEU 3 2 2 LEU LEU B . n B 1 4 GLU 4 3 3 GLU GLU B . n B 1 5 SER 5 4 4 SER SER B . n B 1 6 VAL 6 5 5 VAL VAL B . n B 1 7 ARG 7 6 6 ARG ARG B . n B 1 8 LYS 8 7 7 LYS LYS B . n B 1 9 GLU 9 8 8 GLU GLU B . n B 1 10 TRP 10 9 9 TRP TRP B . n B 1 11 LEU 11 10 10 LEU LEU B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 MSE 14 13 13 MSE MSE B . n B 1 15 ASP 15 14 14 ASP ASP B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 LEU 18 17 17 LEU LEU B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 GLU 20 19 19 GLU GLU B . n B 1 21 LYS 21 20 20 LYS LYS B . n B 1 22 ALA 22 21 21 ALA ALA B . n B 1 23 ARG 23 22 22 ARG ARG B . n B 1 24 SER 24 23 23 SER SER B . n B 1 25 LEU 25 24 24 LEU LEU B . n B 1 26 ILE 26 25 25 ILE ILE B . n B 1 27 ASN 27 26 26 ASN ASN B . n B 1 28 ALA 28 27 27 ALA ALA B . n B 1 29 ASN 29 28 28 ASN ASN B . n B 1 30 TYR 30 29 29 TYR TYR B . n B 1 31 ILE 31 30 30 ILE ILE B . n B 1 32 SER 32 31 31 SER SER B . n B 1 33 THR 33 32 32 THR THR B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 LEU 35 34 34 LEU LEU B . n B 1 36 SER 36 35 35 SER SER B . n B 1 37 THR 37 36 36 THR THR B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 ASP 39 38 38 ASP ASP B . n B 1 40 ARG 40 39 39 ARG ARG B . n B 1 41 ASN 41 40 40 ASN ASN B . n B 1 42 TYR 42 41 41 TYR TYR B . n B 1 43 GLU 43 42 42 GLU GLU B . n B 1 44 VAL 44 43 43 VAL VAL B . n B 1 45 ASN 45 44 44 ASN ASN B . n B 1 46 ILE 46 45 45 ILE ILE B . n B 1 47 ALA 47 46 46 ALA ALA B . n B 1 48 VAL 48 47 47 VAL VAL B . n B 1 49 ILE 49 48 48 ILE ILE B . n B 1 50 SER 50 49 49 SER SER B . n B 1 51 VAL 51 50 50 VAL VAL B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 GLU 53 52 52 GLU GLU B . n B 1 54 MSE 54 53 53 MSE MSE B . n B 1 55 ILE 55 54 54 ILE ILE B . n B 1 56 GLY 56 55 55 GLY GLY B . n B 1 57 ASP 57 56 56 ASP ASP B . n B 1 58 ASP 58 57 57 ASP ASP B . n B 1 59 THR 59 58 58 THR THR B . n B 1 60 ILE 60 59 59 ILE ILE B . n B 1 61 ILE 61 60 60 ILE ILE B . n B 1 62 CYS 62 61 61 CYS CYS B . n B 1 63 ALA 63 62 62 ALA ALA B . n B 1 64 ARG 64 63 63 ARG ARG B . n B 1 65 PHE 65 64 64 PHE PHE B . n B 1 66 GLY 66 65 65 GLY GLY B . n B 1 67 ALA 67 66 66 ALA ALA B . n B 1 68 ASP 68 67 67 ASP ASP B . n B 1 69 LYS 69 68 68 LYS LYS B . n B 1 70 THR 70 69 69 THR THR B . n B 1 71 TYR 71 70 70 TYR TYR B . n B 1 72 ALA 72 71 71 ALA ALA B . n B 1 73 ASN 73 72 72 ASN ASN B . n B 1 74 LEU 74 73 73 LEU LEU B . n B 1 75 LYS 75 74 74 LYS LYS B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 THR 77 76 76 THR THR B . n B 1 78 GLY 78 77 77 GLY GLY B . n B 1 79 LYS 79 78 78 LYS LYS B . n B 1 80 GLY 80 79 79 GLY GLY B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 PHE 82 81 81 PHE PHE B . n B 1 83 MSE 83 82 82 MSE MSE B . n B 1 84 VAL 84 83 83 VAL VAL B . n B 1 85 LEU 85 84 84 LEU LEU B . n B 1 86 LEU 86 85 85 LEU LEU B . n B 1 87 THR 87 86 86 THR THR B . n B 1 88 ASP 88 87 87 ASP ASP B . n B 1 89 ASN 89 88 88 ASN ASN B . n B 1 90 ASP 90 89 89 ASP ASP B . n B 1 91 LYS 91 90 90 LYS LYS B . n B 1 92 SER 92 91 91 SER SER B . n B 1 93 LYS 93 92 92 LYS LYS B . n B 1 94 ASP 94 93 93 ASP ASP B . n B 1 95 GLY 95 94 94 GLY GLY B . n B 1 96 ILE 96 95 95 ILE ILE B . n B 1 97 ARG 97 96 96 ARG ARG B . n B 1 98 VAL 98 97 97 VAL VAL B . n B 1 99 TYR 99 98 98 TYR TYR B . n B 1 100 VAL 100 99 99 VAL VAL B . n B 1 101 GLU 101 100 100 GLU GLU B . n B 1 102 LEU 102 101 101 LEU LEU B . n B 1 103 SER 103 102 102 SER SER B . n B 1 104 ALA 104 103 103 ALA ALA B . n B 1 105 ASP 105 104 104 ASP ASP B . n B 1 106 LEU 106 105 105 LEU LEU B . n B 1 107 GLN 107 106 106 GLN GLN B . n B 1 108 GLU 108 107 107 GLU GLU B . n B 1 109 GLY 109 108 108 GLY GLY B . n B 1 110 GLU 110 109 109 GLU GLU B . n B 1 111 TYR 111 110 110 TYR TYR B . n B 1 112 PHE 112 111 111 PHE PHE B . n B 1 113 ASP 113 112 112 ASP ASP B . n B 1 114 ARG 114 113 113 ARG ARG B . n B 1 115 ILE 115 114 114 ILE ILE B . n B 1 116 LYS 116 115 115 LYS LYS B . n B 1 117 LYS 117 116 116 LYS LYS B . n B 1 118 ARG 118 117 117 ARG ARG B . n B 1 119 LEU 119 118 118 LEU LEU B . n B 1 120 ASP 120 119 119 ASP ASP B . n B 1 121 ASN 121 120 120 ASN ASN B . n B 1 122 THR 122 121 121 THR THR B . n B 1 123 THR 123 122 122 THR THR B . n B 1 124 TYR 124 123 123 TYR TYR B . n B 1 125 LYS 125 124 124 LYS LYS B . n B 1 126 ASN 126 125 125 ASN ASN B . n B 1 127 PHE 127 126 126 PHE PHE B . n B 1 128 PRO 128 127 127 PRO PRO B . n B 1 129 LEU 129 128 128 LEU LEU B . n B 1 130 LYS 130 129 129 LYS LYS B . n B 1 131 ASN 131 130 130 ASN ASN B . n B 1 132 CYS 132 131 131 CYS CYS B . n B 1 133 LEU 133 132 132 LEU LEU B . n B 1 134 VAL 134 133 133 VAL VAL B . n B 1 135 PHE 135 134 134 PHE PHE B . n B 1 136 LYS 136 135 135 LYS LYS B . n B 1 137 ILE 137 136 136 ILE ILE B . n B 1 138 VAL 138 137 137 VAL VAL B . n B 1 139 LYS 139 138 138 LYS LYS B . n B 1 140 ILE 140 139 139 ILE ILE B . n B 1 141 LEU 141 140 140 LEU LEU B . n B 1 142 PRO 142 141 141 PRO PRO B . n B 1 143 VAL 143 142 142 VAL VAL B . n B 1 144 SER 144 143 143 SER SER B . n B 1 145 LEU 145 144 144 LEU LEU B . n B 1 146 LEU 146 145 145 LEU LEU B . n B 1 147 ARG 147 146 146 ARG ARG B . n B 1 148 LYS 148 147 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN 1 148 2 FMN FMN A . D 3 MPD 1 149 3 MPD MPD A . E 2 FMN 1 148 1 FMN FMN B . F 4 HOH 1 150 4 HOH HOH A . F 4 HOH 2 151 5 HOH HOH A . F 4 HOH 3 152 6 HOH HOH A . F 4 HOH 4 153 7 HOH HOH A . F 4 HOH 5 154 8 HOH HOH A . F 4 HOH 6 155 9 HOH HOH A . F 4 HOH 7 156 14 HOH HOH A . F 4 HOH 8 157 15 HOH HOH A . F 4 HOH 9 158 16 HOH HOH A . F 4 HOH 10 159 17 HOH HOH A . F 4 HOH 11 160 20 HOH HOH A . F 4 HOH 12 161 21 HOH HOH A . F 4 HOH 13 162 22 HOH HOH A . F 4 HOH 14 163 23 HOH HOH A . F 4 HOH 15 164 25 HOH HOH A . F 4 HOH 16 165 26 HOH HOH A . F 4 HOH 17 166 27 HOH HOH A . F 4 HOH 18 167 28 HOH HOH A . F 4 HOH 19 168 30 HOH HOH A . F 4 HOH 20 169 31 HOH HOH A . F 4 HOH 21 170 32 HOH HOH A . F 4 HOH 22 171 33 HOH HOH A . F 4 HOH 23 172 34 HOH HOH A . F 4 HOH 24 173 35 HOH HOH A . F 4 HOH 25 174 36 HOH HOH A . F 4 HOH 26 175 37 HOH HOH A . F 4 HOH 27 176 40 HOH HOH A . F 4 HOH 28 177 41 HOH HOH A . F 4 HOH 29 178 42 HOH HOH A . F 4 HOH 30 179 43 HOH HOH A . G 4 HOH 1 149 10 HOH HOH B . G 4 HOH 2 150 11 HOH HOH B . G 4 HOH 3 151 12 HOH HOH B . G 4 HOH 4 152 13 HOH HOH B . G 4 HOH 5 153 18 HOH HOH B . G 4 HOH 6 154 19 HOH HOH B . G 4 HOH 7 155 24 HOH HOH B . G 4 HOH 8 156 29 HOH HOH B . G 4 HOH 9 157 38 HOH HOH B . G 4 HOH 10 158 39 HOH HOH B . G 4 HOH 11 159 44 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 14 A MSE 13 ? MET SELENOMETHIONINE 3 A MSE 54 A MSE 53 ? MET SELENOMETHIONINE 4 A MSE 83 A MSE 82 ? MET SELENOMETHIONINE 5 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 14 B MSE 13 ? MET SELENOMETHIONINE 7 B MSE 54 B MSE 53 ? MET SELENOMETHIONINE 8 B MSE 83 B MSE 82 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5270 ? 1 MORE -51 ? 1 'SSA (A^2)' 14240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -14.1294 -37.4722 12.1492 0.1421 0.1593 0.0067 0.0179 0.0264 0.0027 3.4832 3.4761 0.2637 -1.6385 0.9429 -0.5005 -0.1410 0.1570 -0.0160 -0.4762 -0.0550 0.1113 0.2051 -0.0188 -0.1457 'X-RAY DIFFRACTION' 2 ? refined -11.2647 -15.0228 14.4023 0.1066 0.1096 0.3448 0.0431 -0.1511 -0.1170 3.5250 3.8445 1.0539 -2.3592 -0.5895 -0.0143 -0.3279 0.2303 0.0977 -0.4083 0.9321 -0.9047 0.4570 -0.1066 0.0542 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 146 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 0 B 146 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3IN6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 31 ? ? -90.26 53.80 2 1 ASP B 89 ? ? -133.04 -82.59 3 1 ASN B 120 ? ? -98.70 34.90 4 1 SER B 143 ? ? -164.88 104.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 7 ? CD ? A LYS 8 CD 2 1 Y 1 A LYS 7 ? CE ? A LYS 8 CE 3 1 Y 1 A LYS 7 ? NZ ? A LYS 8 NZ 4 1 Y 1 A GLU 42 ? CG ? A GLU 43 CG 5 1 Y 1 A GLU 42 ? CD ? A GLU 43 CD 6 1 Y 1 A GLU 42 ? OE1 ? A GLU 43 OE1 7 1 Y 1 A GLU 42 ? OE2 ? A GLU 43 OE2 8 1 Y 1 A ASP 87 ? CB ? A ASP 88 CB 9 1 Y 1 A ASP 87 ? CG ? A ASP 88 CG 10 1 Y 1 A ASP 87 ? OD1 ? A ASP 88 OD1 11 1 Y 1 A ASP 87 ? OD2 ? A ASP 88 OD2 12 1 Y 1 A ASN 88 ? CB ? A ASN 89 CB 13 1 Y 1 A ASN 88 ? CG ? A ASN 89 CG 14 1 Y 1 A ASN 88 ? OD1 ? A ASN 89 OD1 15 1 Y 1 A ASN 88 ? ND2 ? A ASN 89 ND2 16 1 Y 1 A LYS 115 ? CD ? A LYS 116 CD 17 1 Y 1 A LYS 115 ? CE ? A LYS 116 CE 18 1 Y 1 A LYS 115 ? NZ ? A LYS 116 NZ 19 1 Y 1 A LYS 116 ? CD ? A LYS 117 CD 20 1 Y 1 A LYS 116 ? CE ? A LYS 117 CE 21 1 Y 1 A LYS 116 ? NZ ? A LYS 117 NZ 22 1 Y 1 A LYS 124 ? CD ? A LYS 125 CD 23 1 Y 1 A LYS 124 ? CE ? A LYS 125 CE 24 1 Y 1 A LYS 124 ? NZ ? A LYS 125 NZ 25 1 Y 1 A ARG 146 ? CG ? A ARG 147 CG 26 1 Y 1 A ARG 146 ? CD ? A ARG 147 CD 27 1 Y 1 A ARG 146 ? NE ? A ARG 147 NE 28 1 Y 1 A ARG 146 ? CZ ? A ARG 147 CZ 29 1 Y 1 A ARG 146 ? NH1 ? A ARG 147 NH1 30 1 Y 1 A ARG 146 ? NH2 ? A ARG 147 NH2 31 1 Y 1 B GLU 3 ? CD ? B GLU 4 CD 32 1 Y 1 B GLU 3 ? OE1 ? B GLU 4 OE1 33 1 Y 1 B GLU 3 ? OE2 ? B GLU 4 OE2 34 1 Y 1 B GLU 16 ? CD ? B GLU 17 CD 35 1 Y 1 B GLU 16 ? OE1 ? B GLU 17 OE1 36 1 Y 1 B GLU 16 ? OE2 ? B GLU 17 OE2 37 1 Y 1 B ARG 39 ? CG ? B ARG 40 CG 38 1 Y 1 B ARG 39 ? CD ? B ARG 40 CD 39 1 Y 1 B ARG 39 ? NE ? B ARG 40 NE 40 1 Y 1 B ARG 39 ? CZ ? B ARG 40 CZ 41 1 Y 1 B ARG 39 ? NH1 ? B ARG 40 NH1 42 1 Y 1 B ARG 39 ? NH2 ? B ARG 40 NH2 43 1 Y 1 B LYS 90 ? CE ? B LYS 91 CE 44 1 Y 1 B LYS 90 ? NZ ? B LYS 91 NZ 45 1 Y 1 B LYS 92 ? CD ? B LYS 93 CD 46 1 Y 1 B LYS 92 ? CE ? B LYS 93 CE 47 1 Y 1 B LYS 92 ? NZ ? B LYS 93 NZ 48 1 Y 1 B GLU 109 ? CD ? B GLU 110 CD 49 1 Y 1 B GLU 109 ? OE1 ? B GLU 110 OE1 50 1 Y 1 B GLU 109 ? OE2 ? B GLU 110 OE2 51 1 Y 1 B LYS 115 ? CG ? B LYS 116 CG 52 1 Y 1 B LYS 115 ? CD ? B LYS 116 CD 53 1 Y 1 B LYS 115 ? CE ? B LYS 116 CE 54 1 Y 1 B LYS 115 ? NZ ? B LYS 116 NZ 55 1 Y 1 B LYS 116 ? CD ? B LYS 117 CD 56 1 Y 1 B LYS 116 ? CE ? B LYS 117 CE 57 1 Y 1 B LYS 116 ? NZ ? B LYS 117 NZ 58 1 Y 1 B ASN 120 ? CG ? B ASN 121 CG 59 1 Y 1 B ASN 120 ? OD1 ? B ASN 121 OD1 60 1 Y 1 B ASN 120 ? ND2 ? B ASN 121 ND2 61 1 Y 1 B LYS 124 ? CD ? B LYS 125 CD 62 1 Y 1 B LYS 124 ? CE ? B LYS 125 CE 63 1 Y 1 B LYS 124 ? NZ ? B LYS 125 NZ 64 1 Y 1 B LYS 135 ? CD ? B LYS 136 CD 65 1 Y 1 B LYS 135 ? CE ? B LYS 136 CE 66 1 Y 1 B LYS 135 ? NZ ? B LYS 136 NZ 67 1 Y 1 B ARG 146 ? CG ? B ARG 147 CG 68 1 Y 1 B ARG 146 ? CD ? B ARG 147 CD 69 1 Y 1 B ARG 146 ? NE ? B ARG 147 NE 70 1 Y 1 B ARG 146 ? CZ ? B ARG 147 CZ 71 1 Y 1 B ARG 146 ? NH1 ? B ARG 147 NH1 72 1 Y 1 B ARG 146 ? NH2 ? B ARG 147 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 147 ? A LYS 148 2 1 Y 1 B LYS 147 ? B LYS 148 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #