data_3IN7 # _entry.id 3IN7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IN7 pdb_00003in7 10.2210/pdb3in7/pdb RCSB RCSB054621 ? ? WWPDB D_1000054621 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HUW . unspecified PDB 3C7I . unspecified PDB 3IMD . unspecified PDB 3IMJ . unspecified PDB 3IN8 . unspecified # _pdbx_database_status.entry_id 3IN7 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Clements, J.H.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Thermodynamic and Structural Effects of Conformational Constraints in Protein-Ligand Interactions. Entropic Paradoxy Associated with Ligand Preorganization. ; J.Am.Chem.Soc. 131 16758 16770 2009 JACSAT US 0002-7863 0004 ? 19886660 10.1021/ja904698q 1 'Ligand Preorganization May Be Accompanied by Entropic Penalties in Protein-Ligand Interactions' Angew.Chem.Int.Ed.Engl. 45 6830 6835 2006 ? GE 1433-7851 9999 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Delorbe, J.E.' 1 ? primary 'Clements, J.H.' 2 ? primary 'Teresk, M.G.' 3 ? primary 'Benfield, A.P.' 4 ? primary 'Plake, H.R.' 5 ? primary 'Millspaugh, L.E.' 6 ? primary 'Martin, S.F.' 7 ? 1 'Benfield, A.P.' 8 ? 1 'Teresk, M.G.' 9 ? 1 'Plake, H.R.' 10 ? 1 'DeLorbe, J.E.' 11 ? 1 'Millspaugh, L.E.' 12 ? 1 'Martin, S.F.' 13 ? # _cell.length_a 40.384 _cell.length_b 63.955 _cell.length_c 92.725 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3IN7 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3IN7 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Growth factor receptor-bound protein 2' 13758.543 2 ? ? 'SH2 domain' ? 2 non-polymer syn 'N~2~-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-D-glutaminyl-D-aspartamide' 556.463 2 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Adapter protein GRB2, SH2/SH3 adapter GRB2, Protein Ash' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH ; _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 GLU n 1 3 MET n 1 4 LYS n 1 5 PRO n 1 6 HIS n 1 7 PRO n 1 8 TRP n 1 9 PHE n 1 10 PHE n 1 11 GLY n 1 12 LYS n 1 13 ILE n 1 14 PRO n 1 15 ARG n 1 16 ALA n 1 17 LYS n 1 18 ALA n 1 19 GLU n 1 20 GLU n 1 21 MET n 1 22 LEU n 1 23 SER n 1 24 LYS n 1 25 GLN n 1 26 ARG n 1 27 HIS n 1 28 ASP n 1 29 GLY n 1 30 ALA n 1 31 PHE n 1 32 LEU n 1 33 ILE n 1 34 ARG n 1 35 GLU n 1 36 SER n 1 37 GLU n 1 38 SER n 1 39 ALA n 1 40 PRO n 1 41 GLY n 1 42 ASP n 1 43 PHE n 1 44 SER n 1 45 LEU n 1 46 SER n 1 47 VAL n 1 48 LYS n 1 49 PHE n 1 50 GLY n 1 51 ASN n 1 52 ASP n 1 53 VAL n 1 54 GLN n 1 55 HIS n 1 56 PHE n 1 57 LYS n 1 58 VAL n 1 59 LEU n 1 60 ARG n 1 61 ASP n 1 62 GLY n 1 63 ALA n 1 64 GLY n 1 65 LYS n 1 66 TYR n 1 67 PHE n 1 68 LEU n 1 69 TRP n 1 70 VAL n 1 71 VAL n 1 72 LYS n 1 73 PHE n 1 74 ASN n 1 75 SER n 1 76 LEU n 1 77 ASN n 1 78 GLU n 1 79 LEU n 1 80 VAL n 1 81 ASP n 1 82 TYR n 1 83 HIS n 1 84 ARG n 1 85 SER n 1 86 THR n 1 87 SER n 1 88 VAL n 1 89 SER n 1 90 ARG n 1 91 ASN n 1 92 GLN n 1 93 GLN n 1 94 ILE n 1 95 PHE n 1 96 LEU n 1 97 ARG n 1 98 ASP n 1 99 ILE n 1 100 GLU n 1 101 GLN n 1 102 VAL n 1 103 PRO n 1 104 GLN n 1 105 GLN n 1 106 PRO n 1 107 THR n 1 108 TYR n 1 109 VAL n 1 110 GLN n 1 111 ALA n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 1 117 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GRB2, ASH' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'residues 53-163 were expressed in addition to a C-terminal 6-his tag' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SG13009 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE-60 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRB2_HUMAN _struct_ref.pdbx_db_accession P62993 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA ; _struct_ref.pdbx_align_begin 53 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IN7 A 1 ? 111 ? P62993 53 ? 163 ? 53 163 2 1 3IN7 C 1 ? 111 ? P62993 53 ? 163 ? 53 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IN7 HIS A 112 ? UNP P62993 ? ? 'expression tag' 164 1 1 3IN7 HIS A 113 ? UNP P62993 ? ? 'expression tag' 165 2 1 3IN7 HIS A 114 ? UNP P62993 ? ? 'expression tag' 166 3 1 3IN7 HIS A 115 ? UNP P62993 ? ? 'expression tag' 167 4 1 3IN7 HIS A 116 ? UNP P62993 ? ? 'expression tag' 168 5 1 3IN7 HIS A 117 ? UNP P62993 ? ? 'expression tag' 169 6 2 3IN7 HIS C 112 ? UNP P62993 ? ? 'expression tag' 164 7 2 3IN7 HIS C 113 ? UNP P62993 ? ? 'expression tag' 165 8 2 3IN7 HIS C 114 ? UNP P62993 ? ? 'expression tag' 166 9 2 3IN7 HIS C 115 ? UNP P62993 ? ? 'expression tag' 167 10 2 3IN7 HIS C 116 ? UNP P62993 ? ? 'expression tag' 168 11 2 3IN7 HIS C 117 ? UNP P62993 ? ? 'expression tag' 169 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AYQ peptide-like . 'N~2~-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-D-glutaminyl-D-aspartamide' ? 'C21 H29 N6 O10 P' 556.463 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3IN7 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;Ligand in lyophilized powder form was dissolved in a 7.6 mg/mL solution of Grb2 SH2 in water such to give a protein/ligand molar ratio of 1.7:1. 3.5 uL of this solution was mixed with 3.5 uL of 0.1 M HEPES, 20% w/v PEG MW10,000, pH 7.5 to create the hanging drop, which yielded crystals of the protein-ligand complex in the presence of the above-mentioned solution after two weeks at room temperature., VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'blue max-flux confocal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3IN7 _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 19967 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_netI_over_sigmaI 20.400 _reflns.pdbx_chi_squared 1.750 _reflns.pdbx_redundancy 4.500 _reflns.percent_possible_obs 71.600 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 27887 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.305 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.989 _reflns_shell.pdbx_redundancy 1.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 179 _reflns_shell.percent_possible_all 6.60 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3IN7 _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 83.600 _refine.ls_number_reflns_obs 14090 _refine.ls_number_reflns_all 16854 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.229 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.250 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.200 _refine.ls_number_reflns_R_free 709 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.558 _refine.solvent_model_param_bsol 20.711 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -14.475 _refine.aniso_B[2][2] 7.857 _refine.aniso_B[3][3] 6.618 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'pdb entry 2HUW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.88 _refine.B_iso_min 14.71 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I 0.00 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1643 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1838 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.012 ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? 1.659 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.413 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.881 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.268 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.766 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 cpYQN.param cpYQN.top 'X-RAY DIFFRACTION' # _struct.entry_id 3IN7 _struct.title 'Crystal Structure of the Grb2 SH2 Domain in Complex with a Cyclopropyl-constrained Ac-pY-Q-N-NH2 Tripeptide Mimic' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IN7 _struct_keywords.text ;LIGAND PREORGANIZATION, PEPTIDE MIMICS, Golgi apparatus, Host-virus interaction, Phosphoprotein, SH2 domain, SH3 domain, Signaling protein-pseudopeptide ligand complex, SIGNALING PROTEIN-PEPTIDE COMPLEX ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/PEPTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 14 ? SER A 23 ? PRO A 66 SER A 75 1 ? 10 HELX_P HELX_P2 2 SER A 75 ? HIS A 83 ? SER A 127 HIS A 135 1 ? 9 HELX_P HELX_P3 3 PRO B 14 ? LYS B 24 ? PRO C 66 LYS C 76 1 ? 11 HELX_P HELX_P4 4 SER B 75 ? HIS B 83 ? SER C 127 HIS C 135 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 31 ? GLU A 35 ? PHE A 83 GLU A 87 A 2 PHE A 43 ? PHE A 49 ? PHE A 95 PHE A 101 A 3 ASP A 52 ? ARG A 60 ? ASP A 104 ARG A 112 A 4 TYR A 66 ? PHE A 67 ? TYR A 118 PHE A 119 B 1 PHE B 9 ? GLY B 11 ? PHE C 61 GLY C 63 B 2 PHE B 31 ? GLU B 35 ? PHE C 83 GLU C 87 B 3 PHE B 43 ? PHE B 49 ? PHE C 95 PHE C 101 B 4 ASP B 52 ? ARG B 60 ? ASP C 104 ARG C 112 B 5 TYR B 66 ? PHE B 67 ? TYR C 118 PHE C 119 B 6 LYS B 72 ? PHE B 73 ? LYS C 124 PHE C 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 34 ? N ARG A 86 O SER A 44 ? O SER A 96 A 2 3 N LEU A 45 ? N LEU A 97 O PHE A 56 ? O PHE A 108 A 3 4 N LEU A 59 ? N LEU A 111 O PHE A 67 ? O PHE A 119 B 1 2 N PHE B 10 ? N PHE C 62 O ILE B 33 ? O ILE C 85 B 2 3 N ARG B 34 ? N ARG C 86 O SER B 44 ? O SER C 96 B 3 4 N LEU B 45 ? N LEU C 97 O PHE B 56 ? O PHE C 108 B 4 5 N LEU B 59 ? N LEU C 111 O PHE B 67 ? O PHE C 119 B 5 6 N TYR B 66 ? N TYR C 118 O PHE B 73 ? O PHE C 125 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AYQ 1 ? 17 'BINDING SITE FOR RESIDUE AYQ A 1' AC2 Software C AYQ 1 ? 14 'BINDING SITE FOR RESIDUE AYQ C 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 HOH E . ? HOH A 17 . ? 1_555 ? 2 AC1 17 HOH E . ? HOH A 22 . ? 1_555 ? 3 AC1 17 ARG A 15 ? ARG A 67 . ? 1_555 ? 4 AC1 17 ARG A 34 ? ARG A 86 . ? 1_555 ? 5 AC1 17 SER A 36 ? SER A 88 . ? 1_555 ? 6 AC1 17 SER A 38 ? SER A 90 . ? 1_555 ? 7 AC1 17 SER A 44 ? SER A 96 . ? 1_555 ? 8 AC1 17 GLN A 54 ? GLN A 106 . ? 1_555 ? 9 AC1 17 HIS A 55 ? HIS A 107 . ? 1_555 ? 10 AC1 17 PHE A 56 ? PHE A 108 . ? 1_555 ? 11 AC1 17 LYS A 57 ? LYS A 109 . ? 1_555 ? 12 AC1 17 LEU A 68 ? LEU A 120 . ? 1_555 ? 13 AC1 17 TRP A 69 ? TRP A 121 . ? 1_555 ? 14 AC1 17 ARG A 90 ? ARG A 142 . ? 4_445 ? 15 AC1 17 ASN A 91 ? ASN A 143 . ? 4_445 ? 16 AC1 17 HOH E . ? HOH A 183 . ? 1_555 ? 17 AC1 17 HOH E . ? HOH A 193 . ? 1_555 ? 18 AC2 14 HOH F . ? HOH C 18 . ? 1_555 ? 19 AC2 14 HOH F . ? HOH C 39 . ? 1_555 ? 20 AC2 14 ARG B 15 ? ARG C 67 . ? 1_555 ? 21 AC2 14 ARG B 34 ? ARG C 86 . ? 1_555 ? 22 AC2 14 SER B 36 ? SER C 88 . ? 1_555 ? 23 AC2 14 SER B 38 ? SER C 90 . ? 1_555 ? 24 AC2 14 SER B 44 ? SER C 96 . ? 1_555 ? 25 AC2 14 HIS B 55 ? HIS C 107 . ? 1_555 ? 26 AC2 14 PHE B 56 ? PHE C 108 . ? 1_555 ? 27 AC2 14 LYS B 57 ? LYS C 109 . ? 1_555 ? 28 AC2 14 LEU B 68 ? LEU C 120 . ? 1_555 ? 29 AC2 14 TRP B 69 ? TRP C 121 . ? 1_555 ? 30 AC2 14 HOH F . ? HOH C 170 . ? 1_555 ? 31 AC2 14 HOH F . ? HOH C 178 . ? 1_555 ? # _atom_sites.entry_id 3IN7 _atom_sites.fract_transf_matrix[1][1] 0.024762 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015636 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010785 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 53 ? ? ? A . n A 1 2 GLU 2 54 ? ? ? A . n A 1 3 MET 3 55 55 MET MET A . n A 1 4 LYS 4 56 56 LYS LYS A . n A 1 5 PRO 5 57 57 PRO PRO A . n A 1 6 HIS 6 58 58 HIS HIS A . n A 1 7 PRO 7 59 59 PRO PRO A . n A 1 8 TRP 8 60 60 TRP TRP A . n A 1 9 PHE 9 61 61 PHE PHE A . n A 1 10 PHE 10 62 62 PHE PHE A . n A 1 11 GLY 11 63 63 GLY GLY A . n A 1 12 LYS 12 64 64 LYS LYS A . n A 1 13 ILE 13 65 65 ILE ILE A . n A 1 14 PRO 14 66 66 PRO PRO A . n A 1 15 ARG 15 67 67 ARG ARG A . n A 1 16 ALA 16 68 68 ALA ALA A . n A 1 17 LYS 17 69 69 LYS LYS A . n A 1 18 ALA 18 70 70 ALA ALA A . n A 1 19 GLU 19 71 71 GLU GLU A . n A 1 20 GLU 20 72 72 GLU GLU A . n A 1 21 MET 21 73 73 MET MET A . n A 1 22 LEU 22 74 74 LEU LEU A . n A 1 23 SER 23 75 75 SER SER A . n A 1 24 LYS 24 76 76 LYS LYS A . n A 1 25 GLN 25 77 77 GLN GLN A . n A 1 26 ARG 26 78 78 ARG ARG A . n A 1 27 HIS 27 79 79 HIS HIS A . n A 1 28 ASP 28 80 80 ASP ASP A . n A 1 29 GLY 29 81 81 GLY GLY A . n A 1 30 ALA 30 82 82 ALA ALA A . n A 1 31 PHE 31 83 83 PHE PHE A . n A 1 32 LEU 32 84 84 LEU LEU A . n A 1 33 ILE 33 85 85 ILE ILE A . n A 1 34 ARG 34 86 86 ARG ARG A . n A 1 35 GLU 35 87 87 GLU GLU A . n A 1 36 SER 36 88 88 SER SER A . n A 1 37 GLU 37 89 89 GLU GLU A . n A 1 38 SER 38 90 90 SER SER A . n A 1 39 ALA 39 91 91 ALA ALA A . n A 1 40 PRO 40 92 92 PRO PRO A . n A 1 41 GLY 41 93 93 GLY GLY A . n A 1 42 ASP 42 94 94 ASP ASP A . n A 1 43 PHE 43 95 95 PHE PHE A . n A 1 44 SER 44 96 96 SER SER A . n A 1 45 LEU 45 97 97 LEU LEU A . n A 1 46 SER 46 98 98 SER SER A . n A 1 47 VAL 47 99 99 VAL VAL A . n A 1 48 LYS 48 100 100 LYS LYS A . n A 1 49 PHE 49 101 101 PHE PHE A . n A 1 50 GLY 50 102 102 GLY GLY A . n A 1 51 ASN 51 103 103 ASN ASN A . n A 1 52 ASP 52 104 104 ASP ASP A . n A 1 53 VAL 53 105 105 VAL VAL A . n A 1 54 GLN 54 106 106 GLN GLN A . n A 1 55 HIS 55 107 107 HIS HIS A . n A 1 56 PHE 56 108 108 PHE PHE A . n A 1 57 LYS 57 109 109 LYS LYS A . n A 1 58 VAL 58 110 110 VAL VAL A . n A 1 59 LEU 59 111 111 LEU LEU A . n A 1 60 ARG 60 112 112 ARG ARG A . n A 1 61 ASP 61 113 113 ASP ASP A . n A 1 62 GLY 62 114 114 GLY GLY A . n A 1 63 ALA 63 115 115 ALA ALA A . n A 1 64 GLY 64 116 116 GLY GLY A . n A 1 65 LYS 65 117 117 LYS LYS A . n A 1 66 TYR 66 118 118 TYR TYR A . n A 1 67 PHE 67 119 119 PHE PHE A . n A 1 68 LEU 68 120 120 LEU LEU A . n A 1 69 TRP 69 121 121 TRP TRP A . n A 1 70 VAL 70 122 122 VAL VAL A . n A 1 71 VAL 71 123 123 VAL VAL A . n A 1 72 LYS 72 124 124 LYS LYS A . n A 1 73 PHE 73 125 125 PHE PHE A . n A 1 74 ASN 74 126 126 ASN ASN A . n A 1 75 SER 75 127 127 SER SER A . n A 1 76 LEU 76 128 128 LEU LEU A . n A 1 77 ASN 77 129 129 ASN ASN A . n A 1 78 GLU 78 130 130 GLU GLU A . n A 1 79 LEU 79 131 131 LEU LEU A . n A 1 80 VAL 80 132 132 VAL VAL A . n A 1 81 ASP 81 133 133 ASP ASP A . n A 1 82 TYR 82 134 134 TYR TYR A . n A 1 83 HIS 83 135 135 HIS HIS A . n A 1 84 ARG 84 136 136 ARG ARG A . n A 1 85 SER 85 137 137 SER SER A . n A 1 86 THR 86 138 138 THR THR A . n A 1 87 SER 87 139 139 SER SER A . n A 1 88 VAL 88 140 140 VAL VAL A . n A 1 89 SER 89 141 141 SER SER A . n A 1 90 ARG 90 142 142 ARG ARG A . n A 1 91 ASN 91 143 143 ASN ASN A . n A 1 92 GLN 92 144 144 GLN GLN A . n A 1 93 GLN 93 145 145 GLN GLN A . n A 1 94 ILE 94 146 146 ILE ILE A . n A 1 95 PHE 95 147 147 PHE PHE A . n A 1 96 LEU 96 148 148 LEU LEU A . n A 1 97 ARG 97 149 149 ARG ARG A . n A 1 98 ASP 98 150 150 ASP ASP A . n A 1 99 ILE 99 151 151 ILE ILE A . n A 1 100 GLU 100 152 152 GLU GLU A . n A 1 101 GLN 101 153 153 GLN GLN A . n A 1 102 VAL 102 154 ? ? ? A . n A 1 103 PRO 103 155 ? ? ? A . n A 1 104 GLN 104 156 ? ? ? A . n A 1 105 GLN 105 157 ? ? ? A . n A 1 106 PRO 106 158 ? ? ? A . n A 1 107 THR 107 159 ? ? ? A . n A 1 108 TYR 108 160 ? ? ? A . n A 1 109 VAL 109 161 ? ? ? A . n A 1 110 GLN 110 162 ? ? ? A . n A 1 111 ALA 111 163 ? ? ? A . n A 1 112 HIS 112 164 ? ? ? A . n A 1 113 HIS 113 165 ? ? ? A . n A 1 114 HIS 114 166 ? ? ? A . n A 1 115 HIS 115 167 ? ? ? A . n A 1 116 HIS 116 168 ? ? ? A . n A 1 117 HIS 117 169 ? ? ? A . n B 1 1 ILE 1 53 ? ? ? C . n B 1 2 GLU 2 54 ? ? ? C . n B 1 3 MET 3 55 55 MET MET C . n B 1 4 LYS 4 56 56 LYS LYS C . n B 1 5 PRO 5 57 57 PRO PRO C . n B 1 6 HIS 6 58 58 HIS HIS C . n B 1 7 PRO 7 59 59 PRO PRO C . n B 1 8 TRP 8 60 60 TRP TRP C . n B 1 9 PHE 9 61 61 PHE PHE C . n B 1 10 PHE 10 62 62 PHE PHE C . n B 1 11 GLY 11 63 63 GLY GLY C . n B 1 12 LYS 12 64 64 LYS LYS C . n B 1 13 ILE 13 65 65 ILE ILE C . n B 1 14 PRO 14 66 66 PRO PRO C . n B 1 15 ARG 15 67 67 ARG ARG C . n B 1 16 ALA 16 68 68 ALA ALA C . n B 1 17 LYS 17 69 69 LYS LYS C . n B 1 18 ALA 18 70 70 ALA ALA C . n B 1 19 GLU 19 71 71 GLU GLU C . n B 1 20 GLU 20 72 72 GLU GLU C . n B 1 21 MET 21 73 73 MET MET C . n B 1 22 LEU 22 74 74 LEU LEU C . n B 1 23 SER 23 75 75 SER SER C . n B 1 24 LYS 24 76 76 LYS LYS C . n B 1 25 GLN 25 77 77 GLN GLN C . n B 1 26 ARG 26 78 78 ARG ARG C . n B 1 27 HIS 27 79 79 HIS HIS C . n B 1 28 ASP 28 80 80 ASP ASP C . n B 1 29 GLY 29 81 81 GLY GLY C . n B 1 30 ALA 30 82 82 ALA ALA C . n B 1 31 PHE 31 83 83 PHE PHE C . n B 1 32 LEU 32 84 84 LEU LEU C . n B 1 33 ILE 33 85 85 ILE ILE C . n B 1 34 ARG 34 86 86 ARG ARG C . n B 1 35 GLU 35 87 87 GLU GLU C . n B 1 36 SER 36 88 88 SER SER C . n B 1 37 GLU 37 89 89 GLU GLU C . n B 1 38 SER 38 90 90 SER SER C . n B 1 39 ALA 39 91 91 ALA ALA C . n B 1 40 PRO 40 92 92 PRO PRO C . n B 1 41 GLY 41 93 93 GLY GLY C . n B 1 42 ASP 42 94 94 ASP ASP C . n B 1 43 PHE 43 95 95 PHE PHE C . n B 1 44 SER 44 96 96 SER SER C . n B 1 45 LEU 45 97 97 LEU LEU C . n B 1 46 SER 46 98 98 SER SER C . n B 1 47 VAL 47 99 99 VAL VAL C . n B 1 48 LYS 48 100 100 LYS LYS C . n B 1 49 PHE 49 101 101 PHE PHE C . n B 1 50 GLY 50 102 102 GLY GLY C . n B 1 51 ASN 51 103 103 ASN ASN C . n B 1 52 ASP 52 104 104 ASP ASP C . n B 1 53 VAL 53 105 105 VAL VAL C . n B 1 54 GLN 54 106 106 GLN GLN C . n B 1 55 HIS 55 107 107 HIS HIS C . n B 1 56 PHE 56 108 108 PHE PHE C . n B 1 57 LYS 57 109 109 LYS LYS C . n B 1 58 VAL 58 110 110 VAL VAL C . n B 1 59 LEU 59 111 111 LEU LEU C . n B 1 60 ARG 60 112 112 ARG ARG C . n B 1 61 ASP 61 113 113 ASP ASP C . n B 1 62 GLY 62 114 114 GLY GLY C . n B 1 63 ALA 63 115 115 ALA ALA C . n B 1 64 GLY 64 116 116 GLY GLY C . n B 1 65 LYS 65 117 117 LYS LYS C . n B 1 66 TYR 66 118 118 TYR TYR C . n B 1 67 PHE 67 119 119 PHE PHE C . n B 1 68 LEU 68 120 120 LEU LEU C . n B 1 69 TRP 69 121 121 TRP TRP C . n B 1 70 VAL 70 122 122 VAL VAL C . n B 1 71 VAL 71 123 123 VAL VAL C . n B 1 72 LYS 72 124 124 LYS LYS C . n B 1 73 PHE 73 125 125 PHE PHE C . n B 1 74 ASN 74 126 126 ASN ASN C . n B 1 75 SER 75 127 127 SER SER C . n B 1 76 LEU 76 128 128 LEU LEU C . n B 1 77 ASN 77 129 129 ASN ASN C . n B 1 78 GLU 78 130 130 GLU GLU C . n B 1 79 LEU 79 131 131 LEU LEU C . n B 1 80 VAL 80 132 132 VAL VAL C . n B 1 81 ASP 81 133 133 ASP ASP C . n B 1 82 TYR 82 134 134 TYR TYR C . n B 1 83 HIS 83 135 135 HIS HIS C . n B 1 84 ARG 84 136 136 ARG ARG C . n B 1 85 SER 85 137 137 SER SER C . n B 1 86 THR 86 138 138 THR THR C . n B 1 87 SER 87 139 139 SER SER C . n B 1 88 VAL 88 140 140 VAL VAL C . n B 1 89 SER 89 141 141 SER SER C . n B 1 90 ARG 90 142 142 ARG ARG C . n B 1 91 ASN 91 143 143 ASN ASN C . n B 1 92 GLN 92 144 144 GLN GLN C . n B 1 93 GLN 93 145 145 GLN GLN C . n B 1 94 ILE 94 146 146 ILE ILE C . n B 1 95 PHE 95 147 147 PHE PHE C . n B 1 96 LEU 96 148 148 LEU LEU C . n B 1 97 ARG 97 149 149 ARG ARG C . n B 1 98 ASP 98 150 150 ASP ASP C . n B 1 99 ILE 99 151 151 ILE ILE C . n B 1 100 GLU 100 152 152 GLU GLU C . n B 1 101 GLN 101 153 153 GLN GLN C . n B 1 102 VAL 102 154 154 VAL VAL C . n B 1 103 PRO 103 155 ? ? ? C . n B 1 104 GLN 104 156 ? ? ? C . n B 1 105 GLN 105 157 ? ? ? C . n B 1 106 PRO 106 158 ? ? ? C . n B 1 107 THR 107 159 ? ? ? C . n B 1 108 TYR 108 160 ? ? ? C . n B 1 109 VAL 109 161 ? ? ? C . n B 1 110 GLN 110 162 ? ? ? C . n B 1 111 ALA 111 163 ? ? ? C . n B 1 112 HIS 112 164 ? ? ? C . n B 1 113 HIS 113 165 ? ? ? C . n B 1 114 HIS 114 166 ? ? ? C . n B 1 115 HIS 115 167 ? ? ? C . n B 1 116 HIS 116 168 ? ? ? C . n B 1 117 HIS 117 169 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AYQ 1 1 1 AYQ AYQ A . D 2 AYQ 1 1 1 AYQ AYQ C . E 3 HOH 1 2 2 HOH HOH A . E 3 HOH 2 3 3 HOH HOH A . E 3 HOH 3 7 7 HOH HOH A . E 3 HOH 4 8 8 HOH HOH A . E 3 HOH 5 9 9 HOH HOH A . E 3 HOH 6 10 10 HOH HOH A . E 3 HOH 7 11 11 HOH HOH A . E 3 HOH 8 12 12 HOH HOH A . E 3 HOH 9 13 13 HOH HOH A . E 3 HOH 10 14 14 HOH HOH A . E 3 HOH 11 15 15 HOH HOH A . E 3 HOH 12 16 16 HOH HOH A . E 3 HOH 13 17 17 HOH HOH A . E 3 HOH 14 20 20 HOH HOH A . E 3 HOH 15 21 21 HOH HOH A . E 3 HOH 16 22 22 HOH HOH A . E 3 HOH 17 23 23 HOH HOH A . E 3 HOH 18 24 24 HOH HOH A . E 3 HOH 19 25 25 HOH HOH A . E 3 HOH 20 26 26 HOH HOH A . E 3 HOH 21 27 27 HOH HOH A . E 3 HOH 22 28 28 HOH HOH A . E 3 HOH 23 36 36 HOH HOH A . E 3 HOH 24 49 49 HOH HOH A . E 3 HOH 25 51 51 HOH HOH A . E 3 HOH 26 52 52 HOH HOH A . E 3 HOH 27 170 1 HOH HOH A . E 3 HOH 28 171 53 HOH HOH A . E 3 HOH 29 172 54 HOH HOH A . E 3 HOH 30 173 55 HOH HOH A . E 3 HOH 31 174 56 HOH HOH A . E 3 HOH 32 175 57 HOH HOH A . E 3 HOH 33 176 58 HOH HOH A . E 3 HOH 34 177 59 HOH HOH A . E 3 HOH 35 178 60 HOH HOH A . E 3 HOH 36 179 61 HOH HOH A . E 3 HOH 37 180 62 HOH HOH A . E 3 HOH 38 181 63 HOH HOH A . E 3 HOH 39 182 73 HOH HOH A . E 3 HOH 40 183 74 HOH HOH A . E 3 HOH 41 184 75 HOH HOH A . E 3 HOH 42 185 76 HOH HOH A . E 3 HOH 43 186 77 HOH HOH A . E 3 HOH 44 187 79 HOH HOH A . E 3 HOH 45 188 81 HOH HOH A . E 3 HOH 46 189 82 HOH HOH A . E 3 HOH 47 190 83 HOH HOH A . E 3 HOH 48 191 84 HOH HOH A . E 3 HOH 49 192 85 HOH HOH A . E 3 HOH 50 193 89 HOH HOH A . E 3 HOH 51 194 90 HOH HOH A . E 3 HOH 52 195 93 HOH HOH A . E 3 HOH 53 196 94 HOH HOH A . E 3 HOH 54 197 95 HOH HOH A . E 3 HOH 55 198 96 HOH HOH A . E 3 HOH 56 199 97 HOH HOH A . E 3 HOH 57 200 98 HOH HOH A . E 3 HOH 58 201 99 HOH HOH A . E 3 HOH 59 202 100 HOH HOH A . E 3 HOH 60 203 101 HOH HOH A . E 3 HOH 61 204 102 HOH HOH A . E 3 HOH 62 205 103 HOH HOH A . E 3 HOH 63 206 109 HOH HOH A . E 3 HOH 64 207 110 HOH HOH A . E 3 HOH 65 208 117 HOH HOH A . E 3 HOH 66 209 118 HOH HOH A . E 3 HOH 67 210 119 HOH HOH A . E 3 HOH 68 211 120 HOH HOH A . E 3 HOH 69 212 112 HOH HOH A . F 3 HOH 1 4 4 HOH HOH C . F 3 HOH 2 5 5 HOH HOH C . F 3 HOH 3 6 6 HOH HOH C . F 3 HOH 4 18 18 HOH HOH C . F 3 HOH 5 19 19 HOH HOH C . F 3 HOH 6 29 29 HOH HOH C . F 3 HOH 7 30 30 HOH HOH C . F 3 HOH 8 31 31 HOH HOH C . F 3 HOH 9 32 32 HOH HOH C . F 3 HOH 10 33 33 HOH HOH C . F 3 HOH 11 34 34 HOH HOH C . F 3 HOH 12 35 35 HOH HOH C . F 3 HOH 13 37 37 HOH HOH C . F 3 HOH 14 38 38 HOH HOH C . F 3 HOH 15 39 39 HOH HOH C . F 3 HOH 16 40 40 HOH HOH C . F 3 HOH 17 41 41 HOH HOH C . F 3 HOH 18 42 42 HOH HOH C . F 3 HOH 19 43 43 HOH HOH C . F 3 HOH 20 44 44 HOH HOH C . F 3 HOH 21 45 45 HOH HOH C . F 3 HOH 22 46 46 HOH HOH C . F 3 HOH 23 47 47 HOH HOH C . F 3 HOH 24 48 48 HOH HOH C . F 3 HOH 25 50 50 HOH HOH C . F 3 HOH 26 170 64 HOH HOH C . F 3 HOH 27 171 65 HOH HOH C . F 3 HOH 28 172 66 HOH HOH C . F 3 HOH 29 173 67 HOH HOH C . F 3 HOH 30 174 68 HOH HOH C . F 3 HOH 31 175 69 HOH HOH C . F 3 HOH 32 176 70 HOH HOH C . F 3 HOH 33 177 71 HOH HOH C . F 3 HOH 34 178 72 HOH HOH C . F 3 HOH 35 179 80 HOH HOH C . F 3 HOH 36 180 86 HOH HOH C . F 3 HOH 37 181 87 HOH HOH C . F 3 HOH 38 182 88 HOH HOH C . F 3 HOH 39 183 91 HOH HOH C . F 3 HOH 40 184 92 HOH HOH C . F 3 HOH 41 185 104 HOH HOH C . F 3 HOH 42 186 105 HOH HOH C . F 3 HOH 43 187 106 HOH HOH C . F 3 HOH 44 188 107 HOH HOH C . F 3 HOH 45 189 108 HOH HOH C . F 3 HOH 46 190 111 HOH HOH C . F 3 HOH 47 192 113 HOH HOH C . F 3 HOH 48 193 114 HOH HOH C . F 3 HOH 49 194 115 HOH HOH C . F 3 HOH 50 195 116 HOH HOH C . # _pdbx_molecule_features.prd_id PRD_000633 _pdbx_molecule_features.name 'CYCLOPROPYL-CONSTRAINED AC-PY-Q-N-NH2 TRIPEPTIDE MIMIC' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000633 C 2 PRD_000633 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F 3 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 2130 ? 3 MORE -12 ? 3 'SSA (A^2)' 10300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CrystalClear . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 121 ? ? -121.88 -92.43 2 1 LYS C 56 ? ? 61.04 111.21 3 1 TRP C 121 ? ? -118.87 -86.46 4 1 ASN C 143 ? ? -96.64 -60.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 53 ? A ILE 1 2 1 Y 1 A GLU 54 ? A GLU 2 3 1 Y 1 A VAL 154 ? A VAL 102 4 1 Y 1 A PRO 155 ? A PRO 103 5 1 Y 1 A GLN 156 ? A GLN 104 6 1 Y 1 A GLN 157 ? A GLN 105 7 1 Y 1 A PRO 158 ? A PRO 106 8 1 Y 1 A THR 159 ? A THR 107 9 1 Y 1 A TYR 160 ? A TYR 108 10 1 Y 1 A VAL 161 ? A VAL 109 11 1 Y 1 A GLN 162 ? A GLN 110 12 1 Y 1 A ALA 163 ? A ALA 111 13 1 Y 1 A HIS 164 ? A HIS 112 14 1 Y 1 A HIS 165 ? A HIS 113 15 1 Y 1 A HIS 166 ? A HIS 114 16 1 Y 1 A HIS 167 ? A HIS 115 17 1 Y 1 A HIS 168 ? A HIS 116 18 1 Y 1 A HIS 169 ? A HIS 117 19 1 Y 1 C ILE 53 ? B ILE 1 20 1 Y 1 C GLU 54 ? B GLU 2 21 1 Y 1 C PRO 155 ? B PRO 103 22 1 Y 1 C GLN 156 ? B GLN 104 23 1 Y 1 C GLN 157 ? B GLN 105 24 1 Y 1 C PRO 158 ? B PRO 106 25 1 Y 1 C THR 159 ? B THR 107 26 1 Y 1 C TYR 160 ? B TYR 108 27 1 Y 1 C VAL 161 ? B VAL 109 28 1 Y 1 C GLN 162 ? B GLN 110 29 1 Y 1 C ALA 163 ? B ALA 111 30 1 Y 1 C HIS 164 ? B HIS 112 31 1 Y 1 C HIS 165 ? B HIS 113 32 1 Y 1 C HIS 166 ? B HIS 114 33 1 Y 1 C HIS 167 ? B HIS 115 34 1 Y 1 C HIS 168 ? B HIS 116 35 1 Y 1 C HIS 169 ? B HIS 117 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 AYQ CAA C N N 74 AYQ OAI O N N 75 AYQ OAJ O N N 76 AYQ OAM O N N 77 AYQ OAK O N N 78 AYQ OAL O N N 79 AYQ CAN C Y N 80 AYQ CAO C Y N 81 AYQ CAP C Y N 82 AYQ CAQ C Y N 83 AYQ NAU N N N 84 AYQ OAX O N N 85 AYQ CBC C N N 86 AYQ CBD C N N 87 AYQ CBE C Y N 88 AYQ CBF C Y N 89 AYQ CBI C N R 90 AYQ CBJ C N R 91 AYQ CBK C N S 92 AYQ PBL P N N 93 AYQ N N N N 94 AYQ CA C N S 95 AYQ C C N N 96 AYQ O O N N 97 AYQ CB C N N 98 AYQ CG C N N 99 AYQ CD C N N 100 AYQ OE1 O N N 101 AYQ NE2 N N N 102 AYQ NAV N N N 103 AYQ CBH C N S 104 AYQ CBA C N N 105 AYQ OAG O N N 106 AYQ CAT C N N 107 AYQ CAZ C N N 108 AYQ OAF O N N 109 AYQ NAC N N N 110 AYQ NAD N N N 111 AYQ HAA H N N 112 AYQ HAAA H N N 113 AYQ HOAK H N N 114 AYQ HOAL H N N 115 AYQ HAN H N N 116 AYQ HAO H N N 117 AYQ HAP H N N 118 AYQ HAQ H N N 119 AYQ HBI H N N 120 AYQ HBJ H N N 121 AYQ HBK H N N 122 AYQ H28 H N N 123 AYQ H29 H N N 124 AYQ HN H N N 125 AYQ HA H N N 126 AYQ HB H N N 127 AYQ HBA H N N 128 AYQ HG H N N 129 AYQ HGA H N N 130 AYQ HNE2 H N N 131 AYQ HNEA H N N 132 AYQ HNAV H N N 133 AYQ HBH H N N 134 AYQ HAT H N N 135 AYQ HATA H N N 136 AYQ HNAC H N N 137 AYQ HNAA H N N 138 AYQ HNAD H N N 139 AYQ HNAB H N N 140 GLN N N N N 141 GLN CA C N S 142 GLN C C N N 143 GLN O O N N 144 GLN CB C N N 145 GLN CG C N N 146 GLN CD C N N 147 GLN OE1 O N N 148 GLN NE2 N N N 149 GLN OXT O N N 150 GLN H H N N 151 GLN H2 H N N 152 GLN HA H N N 153 GLN HB2 H N N 154 GLN HB3 H N N 155 GLN HG2 H N N 156 GLN HG3 H N N 157 GLN HE21 H N N 158 GLN HE22 H N N 159 GLN HXT H N N 160 GLU N N N N 161 GLU CA C N S 162 GLU C C N N 163 GLU O O N N 164 GLU CB C N N 165 GLU CG C N N 166 GLU CD C N N 167 GLU OE1 O N N 168 GLU OE2 O N N 169 GLU OXT O N N 170 GLU H H N N 171 GLU H2 H N N 172 GLU HA H N N 173 GLU HB2 H N N 174 GLU HB3 H N N 175 GLU HG2 H N N 176 GLU HG3 H N N 177 GLU HE2 H N N 178 GLU HXT H N N 179 GLY N N N N 180 GLY CA C N N 181 GLY C C N N 182 GLY O O N N 183 GLY OXT O N N 184 GLY H H N N 185 GLY H2 H N N 186 GLY HA2 H N N 187 GLY HA3 H N N 188 GLY HXT H N N 189 HIS N N N N 190 HIS CA C N S 191 HIS C C N N 192 HIS O O N N 193 HIS CB C N N 194 HIS CG C Y N 195 HIS ND1 N Y N 196 HIS CD2 C Y N 197 HIS CE1 C Y N 198 HIS NE2 N Y N 199 HIS OXT O N N 200 HIS H H N N 201 HIS H2 H N N 202 HIS HA H N N 203 HIS HB2 H N N 204 HIS HB3 H N N 205 HIS HD1 H N N 206 HIS HD2 H N N 207 HIS HE1 H N N 208 HIS HE2 H N N 209 HIS HXT H N N 210 HOH O O N N 211 HOH H1 H N N 212 HOH H2 H N N 213 ILE N N N N 214 ILE CA C N S 215 ILE C C N N 216 ILE O O N N 217 ILE CB C N S 218 ILE CG1 C N N 219 ILE CG2 C N N 220 ILE CD1 C N N 221 ILE OXT O N N 222 ILE H H N N 223 ILE H2 H N N 224 ILE HA H N N 225 ILE HB H N N 226 ILE HG12 H N N 227 ILE HG13 H N N 228 ILE HG21 H N N 229 ILE HG22 H N N 230 ILE HG23 H N N 231 ILE HD11 H N N 232 ILE HD12 H N N 233 ILE HD13 H N N 234 ILE HXT H N N 235 LEU N N N N 236 LEU CA C N S 237 LEU C C N N 238 LEU O O N N 239 LEU CB C N N 240 LEU CG C N N 241 LEU CD1 C N N 242 LEU CD2 C N N 243 LEU OXT O N N 244 LEU H H N N 245 LEU H2 H N N 246 LEU HA H N N 247 LEU HB2 H N N 248 LEU HB3 H N N 249 LEU HG H N N 250 LEU HD11 H N N 251 LEU HD12 H N N 252 LEU HD13 H N N 253 LEU HD21 H N N 254 LEU HD22 H N N 255 LEU HD23 H N N 256 LEU HXT H N N 257 LYS N N N N 258 LYS CA C N S 259 LYS C C N N 260 LYS O O N N 261 LYS CB C N N 262 LYS CG C N N 263 LYS CD C N N 264 LYS CE C N N 265 LYS NZ N N N 266 LYS OXT O N N 267 LYS H H N N 268 LYS H2 H N N 269 LYS HA H N N 270 LYS HB2 H N N 271 LYS HB3 H N N 272 LYS HG2 H N N 273 LYS HG3 H N N 274 LYS HD2 H N N 275 LYS HD3 H N N 276 LYS HE2 H N N 277 LYS HE3 H N N 278 LYS HZ1 H N N 279 LYS HZ2 H N N 280 LYS HZ3 H N N 281 LYS HXT H N N 282 MET N N N N 283 MET CA C N S 284 MET C C N N 285 MET O O N N 286 MET CB C N N 287 MET CG C N N 288 MET SD S N N 289 MET CE C N N 290 MET OXT O N N 291 MET H H N N 292 MET H2 H N N 293 MET HA H N N 294 MET HB2 H N N 295 MET HB3 H N N 296 MET HG2 H N N 297 MET HG3 H N N 298 MET HE1 H N N 299 MET HE2 H N N 300 MET HE3 H N N 301 MET HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 AYQ CAA HAA sing N N 70 AYQ CAA HAAA sing N N 71 AYQ OAJ CBD doub N N 72 AYQ OAM PBL doub N N 73 AYQ OAK PBL sing N N 74 AYQ OAK HOAK sing N N 75 AYQ OAL HOAL sing N N 76 AYQ CAN CAP sing Y N 77 AYQ CAN HAN sing N N 78 AYQ CAO CAQ doub Y N 79 AYQ CAO CBE sing Y N 80 AYQ CAO HAO sing N N 81 AYQ CAP HAP sing N N 82 AYQ CAQ CBF sing Y N 83 AYQ CAQ HAQ sing N N 84 AYQ NAU CAA sing N N 85 AYQ NAU CBC sing N N 86 AYQ OAX CBE sing N N 87 AYQ OAX PBL sing N N 88 AYQ CBC OAI doub N N 89 AYQ CBE CAN doub Y N 90 AYQ CBF CAP doub Y N 91 AYQ CBF CBK sing N N 92 AYQ CBI CBC sing N N 93 AYQ CBI CBJ sing N N 94 AYQ CBI HBI sing N N 95 AYQ CBJ CBD sing N N 96 AYQ CBJ HBJ sing N N 97 AYQ CBK CBI sing N N 98 AYQ CBK CBJ sing N N 99 AYQ CBK HBK sing N N 100 AYQ PBL OAL sing N N 101 AYQ CAA H28 sing N N 102 AYQ NAU H29 sing N N 103 AYQ N CA sing N N 104 AYQ N HN sing N N 105 AYQ CA C sing N N 106 AYQ CA CB sing N N 107 AYQ CA HA sing N N 108 AYQ C O doub N N 109 AYQ CB CG sing N N 110 AYQ CB HB sing N N 111 AYQ CB HBA sing N N 112 AYQ CG CD sing N N 113 AYQ CG HG sing N N 114 AYQ CG HGA sing N N 115 AYQ CD OE1 doub N N 116 AYQ CD NE2 sing N N 117 AYQ NE2 HNE2 sing N N 118 AYQ NE2 HNEA sing N N 119 AYQ NAV CBH sing N N 120 AYQ NAV HNAV sing N N 121 AYQ CBH CBA sing N N 122 AYQ CBH CAT sing N N 123 AYQ CBH HBH sing N N 124 AYQ CBA OAG doub N N 125 AYQ CAT CAZ sing N N 126 AYQ CAT HAT sing N N 127 AYQ CAT HATA sing N N 128 AYQ CAZ OAF doub N N 129 AYQ CAZ NAC sing N N 130 AYQ NAC HNAC sing N N 131 AYQ NAC HNAA sing N N 132 AYQ NAD HNAD sing N N 133 AYQ NAD HNAB sing N N 134 AYQ CBD N sing N N 135 AYQ C NAV sing N N 136 AYQ CBA NAD sing N N 137 GLN N CA sing N N 138 GLN N H sing N N 139 GLN N H2 sing N N 140 GLN CA C sing N N 141 GLN CA CB sing N N 142 GLN CA HA sing N N 143 GLN C O doub N N 144 GLN C OXT sing N N 145 GLN CB CG sing N N 146 GLN CB HB2 sing N N 147 GLN CB HB3 sing N N 148 GLN CG CD sing N N 149 GLN CG HG2 sing N N 150 GLN CG HG3 sing N N 151 GLN CD OE1 doub N N 152 GLN CD NE2 sing N N 153 GLN NE2 HE21 sing N N 154 GLN NE2 HE22 sing N N 155 GLN OXT HXT sing N N 156 GLU N CA sing N N 157 GLU N H sing N N 158 GLU N H2 sing N N 159 GLU CA C sing N N 160 GLU CA CB sing N N 161 GLU CA HA sing N N 162 GLU C O doub N N 163 GLU C OXT sing N N 164 GLU CB CG sing N N 165 GLU CB HB2 sing N N 166 GLU CB HB3 sing N N 167 GLU CG CD sing N N 168 GLU CG HG2 sing N N 169 GLU CG HG3 sing N N 170 GLU CD OE1 doub N N 171 GLU CD OE2 sing N N 172 GLU OE2 HE2 sing N N 173 GLU OXT HXT sing N N 174 GLY N CA sing N N 175 GLY N H sing N N 176 GLY N H2 sing N N 177 GLY CA C sing N N 178 GLY CA HA2 sing N N 179 GLY CA HA3 sing N N 180 GLY C O doub N N 181 GLY C OXT sing N N 182 GLY OXT HXT sing N N 183 HIS N CA sing N N 184 HIS N H sing N N 185 HIS N H2 sing N N 186 HIS CA C sing N N 187 HIS CA CB sing N N 188 HIS CA HA sing N N 189 HIS C O doub N N 190 HIS C OXT sing N N 191 HIS CB CG sing N N 192 HIS CB HB2 sing N N 193 HIS CB HB3 sing N N 194 HIS CG ND1 sing Y N 195 HIS CG CD2 doub Y N 196 HIS ND1 CE1 doub Y N 197 HIS ND1 HD1 sing N N 198 HIS CD2 NE2 sing Y N 199 HIS CD2 HD2 sing N N 200 HIS CE1 NE2 sing Y N 201 HIS CE1 HE1 sing N N 202 HIS NE2 HE2 sing N N 203 HIS OXT HXT sing N N 204 HOH O H1 sing N N 205 HOH O H2 sing N N 206 ILE N CA sing N N 207 ILE N H sing N N 208 ILE N H2 sing N N 209 ILE CA C sing N N 210 ILE CA CB sing N N 211 ILE CA HA sing N N 212 ILE C O doub N N 213 ILE C OXT sing N N 214 ILE CB CG1 sing N N 215 ILE CB CG2 sing N N 216 ILE CB HB sing N N 217 ILE CG1 CD1 sing N N 218 ILE CG1 HG12 sing N N 219 ILE CG1 HG13 sing N N 220 ILE CG2 HG21 sing N N 221 ILE CG2 HG22 sing N N 222 ILE CG2 HG23 sing N N 223 ILE CD1 HD11 sing N N 224 ILE CD1 HD12 sing N N 225 ILE CD1 HD13 sing N N 226 ILE OXT HXT sing N N 227 LEU N CA sing N N 228 LEU N H sing N N 229 LEU N H2 sing N N 230 LEU CA C sing N N 231 LEU CA CB sing N N 232 LEU CA HA sing N N 233 LEU C O doub N N 234 LEU C OXT sing N N 235 LEU CB CG sing N N 236 LEU CB HB2 sing N N 237 LEU CB HB3 sing N N 238 LEU CG CD1 sing N N 239 LEU CG CD2 sing N N 240 LEU CG HG sing N N 241 LEU CD1 HD11 sing N N 242 LEU CD1 HD12 sing N N 243 LEU CD1 HD13 sing N N 244 LEU CD2 HD21 sing N N 245 LEU CD2 HD22 sing N N 246 LEU CD2 HD23 sing N N 247 LEU OXT HXT sing N N 248 LYS N CA sing N N 249 LYS N H sing N N 250 LYS N H2 sing N N 251 LYS CA C sing N N 252 LYS CA CB sing N N 253 LYS CA HA sing N N 254 LYS C O doub N N 255 LYS C OXT sing N N 256 LYS CB CG sing N N 257 LYS CB HB2 sing N N 258 LYS CB HB3 sing N N 259 LYS CG CD sing N N 260 LYS CG HG2 sing N N 261 LYS CG HG3 sing N N 262 LYS CD CE sing N N 263 LYS CD HD2 sing N N 264 LYS CD HD3 sing N N 265 LYS CE NZ sing N N 266 LYS CE HE2 sing N N 267 LYS CE HE3 sing N N 268 LYS NZ HZ1 sing N N 269 LYS NZ HZ2 sing N N 270 LYS NZ HZ3 sing N N 271 LYS OXT HXT sing N N 272 MET N CA sing N N 273 MET N H sing N N 274 MET N H2 sing N N 275 MET CA C sing N N 276 MET CA CB sing N N 277 MET CA HA sing N N 278 MET C O doub N N 279 MET C OXT sing N N 280 MET CB CG sing N N 281 MET CB HB2 sing N N 282 MET CB HB3 sing N N 283 MET CG SD sing N N 284 MET CG HG2 sing N N 285 MET CG HG3 sing N N 286 MET SD CE sing N N 287 MET CE HE1 sing N N 288 MET CE HE2 sing N N 289 MET CE HE3 sing N N 290 MET OXT HXT sing N N 291 PHE N CA sing N N 292 PHE N H sing N N 293 PHE N H2 sing N N 294 PHE CA C sing N N 295 PHE CA CB sing N N 296 PHE CA HA sing N N 297 PHE C O doub N N 298 PHE C OXT sing N N 299 PHE CB CG sing N N 300 PHE CB HB2 sing N N 301 PHE CB HB3 sing N N 302 PHE CG CD1 doub Y N 303 PHE CG CD2 sing Y N 304 PHE CD1 CE1 sing Y N 305 PHE CD1 HD1 sing N N 306 PHE CD2 CE2 doub Y N 307 PHE CD2 HD2 sing N N 308 PHE CE1 CZ doub Y N 309 PHE CE1 HE1 sing N N 310 PHE CE2 CZ sing Y N 311 PHE CE2 HE2 sing N N 312 PHE CZ HZ sing N N 313 PHE OXT HXT sing N N 314 PRO N CA sing N N 315 PRO N CD sing N N 316 PRO N H sing N N 317 PRO CA C sing N N 318 PRO CA CB sing N N 319 PRO CA HA sing N N 320 PRO C O doub N N 321 PRO C OXT sing N N 322 PRO CB CG sing N N 323 PRO CB HB2 sing N N 324 PRO CB HB3 sing N N 325 PRO CG CD sing N N 326 PRO CG HG2 sing N N 327 PRO CG HG3 sing N N 328 PRO CD HD2 sing N N 329 PRO CD HD3 sing N N 330 PRO OXT HXT sing N N 331 SER N CA sing N N 332 SER N H sing N N 333 SER N H2 sing N N 334 SER CA C sing N N 335 SER CA CB sing N N 336 SER CA HA sing N N 337 SER C O doub N N 338 SER C OXT sing N N 339 SER CB OG sing N N 340 SER CB HB2 sing N N 341 SER CB HB3 sing N N 342 SER OG HG sing N N 343 SER OXT HXT sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N~2~-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-D-glutaminyl-D-aspartamide' AYQ 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HUW _pdbx_initial_refinement_model.details 'pdb entry 2HUW' #