data_3IR9 # _entry.id 3IR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IR9 RCSB RCSB054765 WWPDB D_1000054765 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC36528.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3IR9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-21 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Rakowski, E.' 2 'Freeman, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'X-ray crystal structure of C-terminal domain of Peptide Chain Release Factor from Methanosarcina mazei.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Rakowski, E.' 2 primary 'Freeman, L.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3IR9 _cell.length_a 116.124 _cell.length_b 116.124 _cell.length_c 71.454 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IR9 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptide chain release factor subunit 1' 18103.809 2 ? ? 'C-terminal domain' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Translation termination factor aRF1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAYTDESGLSELVNAAGEKLQDLEL(MSE)GQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAER VTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQL(MSE)NA FGGIAAILRYNTGV ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTK CSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAIL RYNTGV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC36528.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 TYR n 1 5 THR n 1 6 ASP n 1 7 GLU n 1 8 SER n 1 9 GLY n 1 10 LEU n 1 11 SER n 1 12 GLU n 1 13 LEU n 1 14 VAL n 1 15 ASN n 1 16 ALA n 1 17 ALA n 1 18 GLY n 1 19 GLU n 1 20 LYS n 1 21 LEU n 1 22 GLN n 1 23 ASP n 1 24 LEU n 1 25 GLU n 1 26 LEU n 1 27 MSE n 1 28 GLY n 1 29 GLN n 1 30 LYS n 1 31 ASN n 1 32 ALA n 1 33 VAL n 1 34 ARG n 1 35 ASP n 1 36 PHE n 1 37 PHE n 1 38 LYS n 1 39 GLU n 1 40 LEU n 1 41 ILE n 1 42 ALA n 1 43 ASP n 1 44 SER n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 ALA n 1 49 TYR n 1 50 GLY n 1 51 GLU n 1 52 SER n 1 53 GLN n 1 54 VAL n 1 55 ARG n 1 56 ALA n 1 57 ASN n 1 58 LEU n 1 59 GLU n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 VAL n 1 64 ASP n 1 65 VAL n 1 66 LEU n 1 67 LEU n 1 68 LEU n 1 69 SER n 1 70 GLU n 1 71 ASP n 1 72 LEU n 1 73 ARG n 1 74 ALA n 1 75 GLU n 1 76 ARG n 1 77 VAL n 1 78 THR n 1 79 THR n 1 80 LYS n 1 81 CYS n 1 82 SER n 1 83 VAL n 1 84 CYS n 1 85 GLY n 1 86 TYR n 1 87 GLU n 1 88 ASN n 1 89 LYS n 1 90 TRP n 1 91 THR n 1 92 ARG n 1 93 ARG n 1 94 TRP n 1 95 LYS n 1 96 PRO n 1 97 GLY n 1 98 GLU n 1 99 PRO n 1 100 ALA n 1 101 PRO n 1 102 ALA n 1 103 ALA n 1 104 GLY n 1 105 ASN n 1 106 CYS n 1 107 PRO n 1 108 LYS n 1 109 CYS n 1 110 GLY n 1 111 SER n 1 112 SER n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 THR n 1 117 ASP n 1 118 VAL n 1 119 THR n 1 120 ASP n 1 121 ILE n 1 122 VAL n 1 123 ASP n 1 124 GLU n 1 125 PHE n 1 126 SER n 1 127 GLU n 1 128 LEU n 1 129 ALA n 1 130 ASP n 1 131 LYS n 1 132 SER n 1 133 ASN n 1 134 ALA n 1 135 LYS n 1 136 VAL n 1 137 VAL n 1 138 PHE n 1 139 VAL n 1 140 SER n 1 141 THR n 1 142 ASP n 1 143 PHE n 1 144 ASP n 1 145 GLU n 1 146 GLY n 1 147 SER n 1 148 GLN n 1 149 LEU n 1 150 MSE n 1 151 ASN n 1 152 ALA n 1 153 PHE n 1 154 GLY n 1 155 GLY n 1 156 ILE n 1 157 ALA n 1 158 ALA n 1 159 ILE n 1 160 LEU n 1 161 ARG n 1 162 TYR n 1 163 ASN n 1 164 THR n 1 165 GLY n 1 166 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanosarcina frisia' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MM_1347, prf1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Go1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanosarcina mazei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2209 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RF1_METMA _struct_ref.pdbx_db_accession Q8PX75 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCS VCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAILRY NTGV ; _struct_ref.pdbx_align_begin 252 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IR9 A 3 ? 166 ? Q8PX75 252 ? 415 ? 252 415 2 1 3IR9 B 3 ? 166 ? Q8PX75 252 ? 415 ? 252 415 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IR9 SER A 1 ? UNP Q8PX75 ? ? 'expression tag' 250 1 1 3IR9 ASN A 2 ? UNP Q8PX75 ? ? 'expression tag' 251 2 2 3IR9 SER B 1 ? UNP Q8PX75 ? ? 'expression tag' 250 3 2 3IR9 ASN B 2 ? UNP Q8PX75 ? ? 'expression tag' 251 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3IR9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES buffer, 70% MPD, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 3IR9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 41.1 _reflns.d_resolution_high 2.207 _reflns.number_obs 35874 _reflns.number_all ? _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.B_iso_Wilson_estimate 62.7 _reflns.pdbx_redundancy 4.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.21 _reflns_shell.d_res_low 2.25 _reflns_shell.percent_possible_all 99.90 _reflns_shell.Rmerge_I_obs 0.793 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.02 _reflns_shell.pdbx_redundancy 4.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3IR9 _refine.ls_number_reflns_obs 35874 _refine.ls_number_reflns_all 35874 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.97 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.1 _refine.ls_d_res_high 2.207 _refine.ls_percent_reflns_obs 99.29 _refine.ls_R_factor_obs 0.1583 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1559 _refine.ls_R_factor_R_free 0.2034 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 1831 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.22 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 72.739 _refine.aniso_B[1][1] -4.472 _refine.aniso_B[2][2] -4.472 _refine.aniso_B[3][3] 8.945 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] -0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.335 _refine.solvent_model_param_bsol 64.762 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ;twinned crystal: twin fraction 0.50, twin operator "h,-h-k,-l" ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML . _refine.pdbx_overall_phase_error 36.34 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2427 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 2465 _refine_hist.d_res_high 2.207 _refine_hist.d_res_low 41.1 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 2469 'X-RAY DIFFRACTION' ? f_angle_d 0.896 ? ? 3332 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.689 ? ? 894 'X-RAY DIFFRACTION' ? f_chiral_restr 0.059 ? ? 379 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 435 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2074 2.2499 1724 0.3389 98.00 0.3366 . . 108 . . . . 'X-RAY DIFFRACTION' . 2.2499 2.2958 1982 0.3154 98.00 0.3585 . . 94 . . . . 'X-RAY DIFFRACTION' . 2.2958 2.3457 1876 0.3166 98.00 0.3483 . . 110 . . . . 'X-RAY DIFFRACTION' . 2.3457 2.4002 1877 0.2945 98.00 0.3135 . . 88 . . . . 'X-RAY DIFFRACTION' . 2.4002 2.4603 1916 0.3070 98.00 0.3186 . . 110 . . . . 'X-RAY DIFFRACTION' . 2.4603 2.5268 1934 0.2952 98.00 0.3374 . . 96 . . . . 'X-RAY DIFFRACTION' . 2.5268 2.6011 1858 0.2911 98.00 0.3629 . . 90 . . . . 'X-RAY DIFFRACTION' . 2.6011 2.6851 1894 0.2751 98.00 0.3267 . . 100 . . . . 'X-RAY DIFFRACTION' . 2.6851 2.7810 1912 0.2535 98.00 0.3310 . . 118 . . . . 'X-RAY DIFFRACTION' . 2.7810 2.8923 1905 0.2444 98.00 0.2680 . . 98 . . . . 'X-RAY DIFFRACTION' . 2.8923 3.0239 1886 0.2116 98.00 0.2891 . . 130 . . . . 'X-RAY DIFFRACTION' . 3.0239 3.1833 1878 0.1887 98.00 0.2825 . . 111 . . . . 'X-RAY DIFFRACTION' . 3.1833 3.3826 1933 0.1753 98.00 0.2162 . . 102 . . . . 'X-RAY DIFFRACTION' . 3.3826 3.6437 1842 0.1420 98.00 0.2066 . . 111 . . . . 'X-RAY DIFFRACTION' . 3.6437 4.0101 1935 0.1191 98.00 0.1385 . . 100 . . . . 'X-RAY DIFFRACTION' . 4.0101 4.5897 1902 0.0887 98.00 0.1048 . . 82 . . . . 'X-RAY DIFFRACTION' . 4.5897 5.7800 1915 0.0941 98.00 0.1531 . . 85 . . . . 'X-RAY DIFFRACTION' . 5.7800 41.1288 1880 0.0988 98.00 0.1297 . . 92 . . . . # _struct.entry_id 3IR9 _struct.title 'C-terminal domain of Peptide Chain Release Factor from Methanosarcina mazei.' _struct.pdbx_descriptor 'Peptide chain release factor subunit 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IR9 _struct_keywords.text ;structural genomics, APC36528.1, C-terminal domain, Peptide Chain Release Factor, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Cytoplasm, Protein biosynthesis, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'putative biological unit is a dimer, the same as asymmetric unit' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 9 ? ALA A 42 ? GLY A 258 ALA A 291 1 ? 34 HELX_P HELX_P2 2 GLY A 50 ? GLU A 59 ? GLY A 299 GLU A 308 1 ? 10 HELX_P HELX_P3 3 ILE A 121 ? SER A 132 ? ILE A 370 SER A 381 1 ? 12 HELX_P HELX_P4 4 PHE A 143 ? ALA A 152 ? PHE A 392 ALA A 401 1 ? 10 HELX_P HELX_P5 5 GLY B 9 ? ASP B 43 ? GLY B 258 ASP B 292 1 ? 35 HELX_P HELX_P6 6 GLY B 50 ? GLU B 59 ? GLY B 299 GLU B 308 1 ? 10 HELX_P HELX_P7 7 ILE B 121 ? ASN B 133 ? ILE B 370 ASN B 382 1 ? 13 HELX_P HELX_P8 8 GLY B 146 ? PHE B 153 ? GLY B 395 PHE B 402 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 26 C ? ? ? 1_555 A MSE 27 N ? ? A LEU 275 A MSE 276 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 27 C ? ? ? 1_555 A GLY 28 N ? ? A MSE 276 A GLY 277 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A LEU 149 C ? ? ? 1_555 A MSE 150 N ? ? A LEU 398 A MSE 399 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 150 C ? ? ? 1_555 A ASN 151 N ? ? A MSE 399 A ASN 400 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? B LEU 26 C ? ? ? 1_555 B MSE 27 N ? ? B LEU 275 B MSE 276 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? B MSE 27 C ? ? ? 1_555 B GLY 28 N ? ? B MSE 276 B GLY 277 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? B LEU 149 C ? ? ? 1_555 B MSE 150 N ? ? B LEU 398 B MSE 399 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? B MSE 150 C ? ? ? 1_555 B ASN 151 N ? ? B MSE 399 B ASN 400 1_555 ? ? ? ? ? ? ? 1.326 ? metalc1 metalc ? ? B CYS 81 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 330 B ZN 501 1_555 ? ? ? ? ? ? ? 2.233 ? metalc2 metalc ? ? A CYS 109 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 358 A ZN 501 1_555 ? ? ? ? ? ? ? 2.306 ? metalc3 metalc ? ? A CYS 106 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 355 A ZN 501 1_555 ? ? ? ? ? ? ? 2.337 ? metalc4 metalc ? ? B CYS 109 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 358 B ZN 501 1_555 ? ? ? ? ? ? ? 2.339 ? metalc5 metalc ? ? A CYS 81 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 330 A ZN 501 1_555 ? ? ? ? ? ? ? 2.399 ? metalc6 metalc ? ? B CYS 106 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 355 B ZN 501 1_555 ? ? ? ? ? ? ? 2.480 ? metalc7 metalc ? ? B CYS 84 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 333 B ZN 501 1_555 ? ? ? ? ? ? ? 2.485 ? metalc8 metalc ? ? A CYS 84 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 333 A ZN 501 1_555 ? ? ? ? ? ? ? 2.628 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 47 ? TYR A 49 ? VAL A 296 TYR A 298 A 2 ILE A 156 ? LEU A 160 ? ILE A 405 LEU A 409 A 3 VAL A 63 ? SER A 69 ? VAL A 312 SER A 318 A 4 LYS A 135 ? VAL A 139 ? LYS A 384 VAL A 388 B 1 GLU A 87 ? ARG A 92 ? GLU A 336 ARG A 341 B 2 GLU A 75 ? CYS A 81 ? GLU A 324 CYS A 330 B 3 LEU A 113 ? ASP A 120 ? LEU A 362 ASP A 369 C 1 VAL B 47 ? TYR B 49 ? VAL B 296 TYR B 298 C 2 ILE B 156 ? LEU B 160 ? ILE B 405 LEU B 409 C 3 VAL B 63 ? SER B 69 ? VAL B 312 SER B 318 C 4 LYS B 135 ? VAL B 139 ? LYS B 384 VAL B 388 D 1 GLU B 87 ? ARG B 93 ? GLU B 336 ARG B 342 D 2 ALA B 74 ? CYS B 81 ? ALA B 323 CYS B 330 D 3 SER B 112 ? ASP B 120 ? SER B 361 ASP B 369 D 4 GLY B 104 ? ASN B 105 ? GLY B 353 ASN B 354 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 48 ? N ALA A 297 O ALA A 158 ? O ALA A 407 A 2 3 O ALA A 157 ? O ALA A 406 N LEU A 67 ? N LEU A 316 A 3 4 N LEU A 66 ? N LEU A 315 O LYS A 135 ? O LYS A 384 B 1 2 O TRP A 90 ? O TRP A 339 N VAL A 77 ? N VAL A 326 B 2 3 N ARG A 76 ? N ARG A 325 O THR A 119 ? O THR A 368 C 1 2 N ALA B 48 ? N ALA B 297 O ALA B 158 ? O ALA B 407 C 2 3 O ALA B 157 ? O ALA B 406 N LEU B 67 ? N LEU B 316 C 3 4 N LEU B 66 ? N LEU B 315 O VAL B 137 ? O VAL B 386 D 1 2 O TRP B 90 ? O TRP B 339 N VAL B 77 ? N VAL B 326 D 2 3 N THR B 78 ? N THR B 327 O THR B 116 ? O THR B 365 D 3 4 O LEU B 113 ? O LEU B 362 N GLY B 104 ? N GLY B 353 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 81 ? CYS A 330 . ? 1_555 ? 2 AC1 4 CYS A 84 ? CYS A 333 . ? 1_555 ? 3 AC1 4 CYS A 106 ? CYS A 355 . ? 1_555 ? 4 AC1 4 CYS A 109 ? CYS A 358 . ? 1_555 ? 5 AC2 4 CYS B 81 ? CYS B 330 . ? 1_555 ? 6 AC2 4 CYS B 84 ? CYS B 333 . ? 1_555 ? 7 AC2 4 CYS B 106 ? CYS B 355 . ? 1_555 ? 8 AC2 4 CYS B 109 ? CYS B 358 . ? 1_555 ? # _atom_sites.entry_id 3IR9 _atom_sites.fract_transf_matrix[1][1] 0.008611 _atom_sites.fract_transf_matrix[1][2] 0.004972 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009944 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013995 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 250 ? ? ? A . n A 1 2 ASN 2 251 ? ? ? A . n A 1 3 ALA 3 252 252 ALA ALA A . n A 1 4 TYR 4 253 253 TYR TYR A . n A 1 5 THR 5 254 254 THR THR A . n A 1 6 ASP 6 255 255 ASP ASP A . n A 1 7 GLU 7 256 256 GLU GLU A . n A 1 8 SER 8 257 257 SER SER A . n A 1 9 GLY 9 258 258 GLY GLY A . n A 1 10 LEU 10 259 259 LEU LEU A . n A 1 11 SER 11 260 260 SER SER A . n A 1 12 GLU 12 261 261 GLU GLU A . n A 1 13 LEU 13 262 262 LEU LEU A . n A 1 14 VAL 14 263 263 VAL VAL A . n A 1 15 ASN 15 264 264 ASN ASN A . n A 1 16 ALA 16 265 265 ALA ALA A . n A 1 17 ALA 17 266 266 ALA ALA A . n A 1 18 GLY 18 267 267 GLY GLY A . n A 1 19 GLU 19 268 268 GLU GLU A . n A 1 20 LYS 20 269 269 LYS LYS A . n A 1 21 LEU 21 270 270 LEU LEU A . n A 1 22 GLN 22 271 271 GLN GLN A . n A 1 23 ASP 23 272 272 ASP ASP A . n A 1 24 LEU 24 273 273 LEU LEU A . n A 1 25 GLU 25 274 274 GLU GLU A . n A 1 26 LEU 26 275 275 LEU LEU A . n A 1 27 MSE 27 276 276 MSE MSE A . n A 1 28 GLY 28 277 277 GLY GLY A . n A 1 29 GLN 29 278 278 GLN GLN A . n A 1 30 LYS 30 279 279 LYS LYS A . n A 1 31 ASN 31 280 280 ASN ASN A . n A 1 32 ALA 32 281 281 ALA ALA A . n A 1 33 VAL 33 282 282 VAL VAL A . n A 1 34 ARG 34 283 283 ARG ARG A . n A 1 35 ASP 35 284 284 ASP ASP A . n A 1 36 PHE 36 285 285 PHE PHE A . n A 1 37 PHE 37 286 286 PHE PHE A . n A 1 38 LYS 38 287 287 LYS LYS A . n A 1 39 GLU 39 288 288 GLU GLU A . n A 1 40 LEU 40 289 289 LEU LEU A . n A 1 41 ILE 41 290 290 ILE ILE A . n A 1 42 ALA 42 291 291 ALA ALA A . n A 1 43 ASP 43 292 292 ASP ASP A . n A 1 44 SER 44 293 293 SER SER A . n A 1 45 GLY 45 294 294 GLY GLY A . n A 1 46 LYS 46 295 295 LYS LYS A . n A 1 47 VAL 47 296 296 VAL VAL A . n A 1 48 ALA 48 297 297 ALA ALA A . n A 1 49 TYR 49 298 298 TYR TYR A . n A 1 50 GLY 50 299 299 GLY GLY A . n A 1 51 GLU 51 300 300 GLU GLU A . n A 1 52 SER 52 301 301 SER SER A . n A 1 53 GLN 53 302 302 GLN GLN A . n A 1 54 VAL 54 303 303 VAL VAL A . n A 1 55 ARG 55 304 304 ARG ARG A . n A 1 56 ALA 56 305 305 ALA ALA A . n A 1 57 ASN 57 306 306 ASN ASN A . n A 1 58 LEU 58 307 307 LEU LEU A . n A 1 59 GLU 59 308 308 GLU GLU A . n A 1 60 ILE 60 309 309 ILE ILE A . n A 1 61 ASN 61 310 310 ASN ASN A . n A 1 62 SER 62 311 311 SER SER A . n A 1 63 VAL 63 312 312 VAL VAL A . n A 1 64 ASP 64 313 313 ASP ASP A . n A 1 65 VAL 65 314 314 VAL VAL A . n A 1 66 LEU 66 315 315 LEU LEU A . n A 1 67 LEU 67 316 316 LEU LEU A . n A 1 68 LEU 68 317 317 LEU LEU A . n A 1 69 SER 69 318 318 SER SER A . n A 1 70 GLU 70 319 319 GLU GLU A . n A 1 71 ASP 71 320 320 ASP ASP A . n A 1 72 LEU 72 321 321 LEU LEU A . n A 1 73 ARG 73 322 322 ARG ARG A . n A 1 74 ALA 74 323 323 ALA ALA A . n A 1 75 GLU 75 324 324 GLU GLU A . n A 1 76 ARG 76 325 325 ARG ARG A . n A 1 77 VAL 77 326 326 VAL VAL A . n A 1 78 THR 78 327 327 THR THR A . n A 1 79 THR 79 328 328 THR THR A . n A 1 80 LYS 80 329 329 LYS LYS A . n A 1 81 CYS 81 330 330 CYS CYS A . n A 1 82 SER 82 331 331 SER SER A . n A 1 83 VAL 83 332 332 VAL VAL A . n A 1 84 CYS 84 333 333 CYS CYS A . n A 1 85 GLY 85 334 334 GLY GLY A . n A 1 86 TYR 86 335 335 TYR TYR A . n A 1 87 GLU 87 336 336 GLU GLU A . n A 1 88 ASN 88 337 337 ASN ASN A . n A 1 89 LYS 89 338 338 LYS LYS A . n A 1 90 TRP 90 339 339 TRP TRP A . n A 1 91 THR 91 340 340 THR THR A . n A 1 92 ARG 92 341 341 ARG ARG A . n A 1 93 ARG 93 342 342 ARG ARG A . n A 1 94 TRP 94 343 343 TRP TRP A . n A 1 95 LYS 95 344 344 LYS LYS A . n A 1 96 PRO 96 345 345 PRO PRO A . n A 1 97 GLY 97 346 ? ? ? A . n A 1 98 GLU 98 347 ? ? ? A . n A 1 99 PRO 99 348 348 PRO PRO A . n A 1 100 ALA 100 349 349 ALA ALA A . n A 1 101 PRO 101 350 350 PRO PRO A . n A 1 102 ALA 102 351 351 ALA ALA A . n A 1 103 ALA 103 352 352 ALA ALA A . n A 1 104 GLY 104 353 353 GLY GLY A . n A 1 105 ASN 105 354 354 ASN ASN A . n A 1 106 CYS 106 355 355 CYS CYS A . n A 1 107 PRO 107 356 356 PRO PRO A . n A 1 108 LYS 108 357 357 LYS LYS A . n A 1 109 CYS 109 358 358 CYS CYS A . n A 1 110 GLY 110 359 359 GLY GLY A . n A 1 111 SER 111 360 360 SER SER A . n A 1 112 SER 112 361 361 SER SER A . n A 1 113 LEU 113 362 362 LEU LEU A . n A 1 114 GLU 114 363 363 GLU GLU A . n A 1 115 VAL 115 364 364 VAL VAL A . n A 1 116 THR 116 365 365 THR THR A . n A 1 117 ASP 117 366 366 ASP ASP A . n A 1 118 VAL 118 367 367 VAL VAL A . n A 1 119 THR 119 368 368 THR THR A . n A 1 120 ASP 120 369 369 ASP ASP A . n A 1 121 ILE 121 370 370 ILE ILE A . n A 1 122 VAL 122 371 371 VAL VAL A . n A 1 123 ASP 123 372 372 ASP ASP A . n A 1 124 GLU 124 373 373 GLU GLU A . n A 1 125 PHE 125 374 374 PHE PHE A . n A 1 126 SER 126 375 375 SER SER A . n A 1 127 GLU 127 376 376 GLU GLU A . n A 1 128 LEU 128 377 377 LEU LEU A . n A 1 129 ALA 129 378 378 ALA ALA A . n A 1 130 ASP 130 379 379 ASP ASP A . n A 1 131 LYS 131 380 380 LYS LYS A . n A 1 132 SER 132 381 381 SER SER A . n A 1 133 ASN 133 382 382 ASN ASN A . n A 1 134 ALA 134 383 383 ALA ALA A . n A 1 135 LYS 135 384 384 LYS LYS A . n A 1 136 VAL 136 385 385 VAL VAL A . n A 1 137 VAL 137 386 386 VAL VAL A . n A 1 138 PHE 138 387 387 PHE PHE A . n A 1 139 VAL 139 388 388 VAL VAL A . n A 1 140 SER 140 389 389 SER SER A . n A 1 141 THR 141 390 390 THR THR A . n A 1 142 ASP 142 391 391 ASP ASP A . n A 1 143 PHE 143 392 392 PHE PHE A . n A 1 144 ASP 144 393 393 ASP ASP A . n A 1 145 GLU 145 394 394 GLU GLU A . n A 1 146 GLY 146 395 395 GLY GLY A . n A 1 147 SER 147 396 396 SER SER A . n A 1 148 GLN 148 397 397 GLN GLN A . n A 1 149 LEU 149 398 398 LEU LEU A . n A 1 150 MSE 150 399 399 MSE MSE A . n A 1 151 ASN 151 400 400 ASN ASN A . n A 1 152 ALA 152 401 401 ALA ALA A . n A 1 153 PHE 153 402 402 PHE PHE A . n A 1 154 GLY 154 403 403 GLY GLY A . n A 1 155 GLY 155 404 404 GLY GLY A . n A 1 156 ILE 156 405 405 ILE ILE A . n A 1 157 ALA 157 406 406 ALA ALA A . n A 1 158 ALA 158 407 407 ALA ALA A . n A 1 159 ILE 159 408 408 ILE ILE A . n A 1 160 LEU 160 409 409 LEU LEU A . n A 1 161 ARG 161 410 410 ARG ARG A . n A 1 162 TYR 162 411 411 TYR TYR A . n A 1 163 ASN 163 412 412 ASN ASN A . n A 1 164 THR 164 413 413 THR THR A . n A 1 165 GLY 165 414 414 GLY GLY A . n A 1 166 VAL 166 415 415 VAL VAL A . n B 1 1 SER 1 250 ? ? ? B . n B 1 2 ASN 2 251 ? ? ? B . n B 1 3 ALA 3 252 252 ALA ALA B . n B 1 4 TYR 4 253 253 TYR TYR B . n B 1 5 THR 5 254 254 THR THR B . n B 1 6 ASP 6 255 255 ASP ASP B . n B 1 7 GLU 7 256 256 GLU GLU B . n B 1 8 SER 8 257 257 SER SER B . n B 1 9 GLY 9 258 258 GLY GLY B . n B 1 10 LEU 10 259 259 LEU LEU B . n B 1 11 SER 11 260 260 SER SER B . n B 1 12 GLU 12 261 261 GLU GLU B . n B 1 13 LEU 13 262 262 LEU LEU B . n B 1 14 VAL 14 263 263 VAL VAL B . n B 1 15 ASN 15 264 264 ASN ASN B . n B 1 16 ALA 16 265 265 ALA ALA B . n B 1 17 ALA 17 266 266 ALA ALA B . n B 1 18 GLY 18 267 267 GLY GLY B . n B 1 19 GLU 19 268 268 GLU GLU B . n B 1 20 LYS 20 269 269 LYS LYS B . n B 1 21 LEU 21 270 270 LEU LEU B . n B 1 22 GLN 22 271 271 GLN GLN B . n B 1 23 ASP 23 272 272 ASP ASP B . n B 1 24 LEU 24 273 273 LEU LEU B . n B 1 25 GLU 25 274 274 GLU GLU B . n B 1 26 LEU 26 275 275 LEU LEU B . n B 1 27 MSE 27 276 276 MSE MSE B . n B 1 28 GLY 28 277 277 GLY GLY B . n B 1 29 GLN 29 278 278 GLN GLN B . n B 1 30 LYS 30 279 279 LYS LYS B . n B 1 31 ASN 31 280 280 ASN ASN B . n B 1 32 ALA 32 281 281 ALA ALA B . n B 1 33 VAL 33 282 282 VAL VAL B . n B 1 34 ARG 34 283 283 ARG ARG B . n B 1 35 ASP 35 284 284 ASP ASP B . n B 1 36 PHE 36 285 285 PHE PHE B . n B 1 37 PHE 37 286 286 PHE PHE B . n B 1 38 LYS 38 287 287 LYS LYS B . n B 1 39 GLU 39 288 288 GLU GLU B . n B 1 40 LEU 40 289 289 LEU LEU B . n B 1 41 ILE 41 290 290 ILE ILE B . n B 1 42 ALA 42 291 291 ALA ALA B . n B 1 43 ASP 43 292 292 ASP ASP B . n B 1 44 SER 44 293 293 SER SER B . n B 1 45 GLY 45 294 294 GLY GLY B . n B 1 46 LYS 46 295 295 LYS LYS B . n B 1 47 VAL 47 296 296 VAL VAL B . n B 1 48 ALA 48 297 297 ALA ALA B . n B 1 49 TYR 49 298 298 TYR TYR B . n B 1 50 GLY 50 299 299 GLY GLY B . n B 1 51 GLU 51 300 300 GLU GLU B . n B 1 52 SER 52 301 301 SER SER B . n B 1 53 GLN 53 302 302 GLN GLN B . n B 1 54 VAL 54 303 303 VAL VAL B . n B 1 55 ARG 55 304 304 ARG ARG B . n B 1 56 ALA 56 305 305 ALA ALA B . n B 1 57 ASN 57 306 306 ASN ASN B . n B 1 58 LEU 58 307 307 LEU LEU B . n B 1 59 GLU 59 308 308 GLU GLU B . n B 1 60 ILE 60 309 309 ILE ILE B . n B 1 61 ASN 61 310 310 ASN ASN B . n B 1 62 SER 62 311 311 SER SER B . n B 1 63 VAL 63 312 312 VAL VAL B . n B 1 64 ASP 64 313 313 ASP ASP B . n B 1 65 VAL 65 314 314 VAL VAL B . n B 1 66 LEU 66 315 315 LEU LEU B . n B 1 67 LEU 67 316 316 LEU LEU B . n B 1 68 LEU 68 317 317 LEU LEU B . n B 1 69 SER 69 318 318 SER SER B . n B 1 70 GLU 70 319 319 GLU GLU B . n B 1 71 ASP 71 320 320 ASP ASP B . n B 1 72 LEU 72 321 321 LEU LEU B . n B 1 73 ARG 73 322 322 ARG ARG B . n B 1 74 ALA 74 323 323 ALA ALA B . n B 1 75 GLU 75 324 324 GLU GLU B . n B 1 76 ARG 76 325 325 ARG ARG B . n B 1 77 VAL 77 326 326 VAL VAL B . n B 1 78 THR 78 327 327 THR THR B . n B 1 79 THR 79 328 328 THR THR B . n B 1 80 LYS 80 329 329 LYS LYS B . n B 1 81 CYS 81 330 330 CYS CYS B . n B 1 82 SER 82 331 331 SER SER B . n B 1 83 VAL 83 332 332 VAL VAL B . n B 1 84 CYS 84 333 333 CYS CYS B . n B 1 85 GLY 85 334 334 GLY GLY B . n B 1 86 TYR 86 335 335 TYR TYR B . n B 1 87 GLU 87 336 336 GLU GLU B . n B 1 88 ASN 88 337 337 ASN ASN B . n B 1 89 LYS 89 338 338 LYS LYS B . n B 1 90 TRP 90 339 339 TRP TRP B . n B 1 91 THR 91 340 340 THR THR B . n B 1 92 ARG 92 341 341 ARG ARG B . n B 1 93 ARG 93 342 342 ARG ARG B . n B 1 94 TRP 94 343 343 TRP TRP B . n B 1 95 LYS 95 344 344 LYS LYS B . n B 1 96 PRO 96 345 345 PRO PRO B . n B 1 97 GLY 97 346 ? ? ? B . n B 1 98 GLU 98 347 ? ? ? B . n B 1 99 PRO 99 348 348 PRO PRO B . n B 1 100 ALA 100 349 349 ALA ALA B . n B 1 101 PRO 101 350 350 PRO PRO B . n B 1 102 ALA 102 351 351 ALA ALA B . n B 1 103 ALA 103 352 352 ALA ALA B . n B 1 104 GLY 104 353 353 GLY GLY B . n B 1 105 ASN 105 354 354 ASN ASN B . n B 1 106 CYS 106 355 355 CYS CYS B . n B 1 107 PRO 107 356 356 PRO PRO B . n B 1 108 LYS 108 357 357 LYS LYS B . n B 1 109 CYS 109 358 358 CYS CYS B . n B 1 110 GLY 110 359 359 GLY GLY B . n B 1 111 SER 111 360 360 SER SER B . n B 1 112 SER 112 361 361 SER SER B . n B 1 113 LEU 113 362 362 LEU LEU B . n B 1 114 GLU 114 363 363 GLU GLU B . n B 1 115 VAL 115 364 364 VAL VAL B . n B 1 116 THR 116 365 365 THR THR B . n B 1 117 ASP 117 366 366 ASP ASP B . n B 1 118 VAL 118 367 367 VAL VAL B . n B 1 119 THR 119 368 368 THR THR B . n B 1 120 ASP 120 369 369 ASP ASP B . n B 1 121 ILE 121 370 370 ILE ILE B . n B 1 122 VAL 122 371 371 VAL VAL B . n B 1 123 ASP 123 372 372 ASP ASP B . n B 1 124 GLU 124 373 373 GLU GLU B . n B 1 125 PHE 125 374 374 PHE PHE B . n B 1 126 SER 126 375 375 SER SER B . n B 1 127 GLU 127 376 376 GLU GLU B . n B 1 128 LEU 128 377 377 LEU LEU B . n B 1 129 ALA 129 378 378 ALA ALA B . n B 1 130 ASP 130 379 379 ASP ASP B . n B 1 131 LYS 131 380 380 LYS LYS B . n B 1 132 SER 132 381 381 SER SER B . n B 1 133 ASN 133 382 382 ASN ASN B . n B 1 134 ALA 134 383 383 ALA ALA B . n B 1 135 LYS 135 384 384 LYS LYS B . n B 1 136 VAL 136 385 385 VAL VAL B . n B 1 137 VAL 137 386 386 VAL VAL B . n B 1 138 PHE 138 387 387 PHE PHE B . n B 1 139 VAL 139 388 388 VAL VAL B . n B 1 140 SER 140 389 389 SER SER B . n B 1 141 THR 141 390 ? ? ? B . n B 1 142 ASP 142 391 ? ? ? B . n B 1 143 PHE 143 392 ? ? ? B . n B 1 144 ASP 144 393 ? ? ? B . n B 1 145 GLU 145 394 ? ? ? B . n B 1 146 GLY 146 395 395 GLY GLY B . n B 1 147 SER 147 396 396 SER SER B . n B 1 148 GLN 148 397 397 GLN GLN B . n B 1 149 LEU 149 398 398 LEU LEU B . n B 1 150 MSE 150 399 399 MSE MSE B . n B 1 151 ASN 151 400 400 ASN ASN B . n B 1 152 ALA 152 401 401 ALA ALA B . n B 1 153 PHE 153 402 402 PHE PHE B . n B 1 154 GLY 154 403 403 GLY GLY B . n B 1 155 GLY 155 404 404 GLY GLY B . n B 1 156 ILE 156 405 405 ILE ILE B . n B 1 157 ALA 157 406 406 ALA ALA B . n B 1 158 ALA 158 407 407 ALA ALA B . n B 1 159 ILE 159 408 408 ILE ILE B . n B 1 160 LEU 160 409 409 LEU LEU B . n B 1 161 ARG 161 410 410 ARG ARG B . n B 1 162 TYR 162 411 411 TYR TYR B . n B 1 163 ASN 163 412 412 ASN ASN B . n B 1 164 THR 164 413 413 THR THR B . n B 1 165 GLY 165 414 414 GLY GLY B . n B 1 166 VAL 166 415 415 VAL VAL B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 501 501 ZN ZN A . D 2 ZN 1 501 501 ZN ZN B . E 3 HOH 1 2 2 HOH HOH A . E 3 HOH 2 4 4 HOH HOH A . E 3 HOH 3 5 5 HOH HOH A . E 3 HOH 4 6 6 HOH HOH A . E 3 HOH 5 7 7 HOH HOH A . E 3 HOH 6 8 8 HOH HOH A . E 3 HOH 7 10 10 HOH HOH A . E 3 HOH 8 12 12 HOH HOH A . E 3 HOH 9 14 14 HOH HOH A . E 3 HOH 10 15 15 HOH HOH A . E 3 HOH 11 16 16 HOH HOH A . E 3 HOH 12 17 17 HOH HOH A . E 3 HOH 13 19 19 HOH HOH A . E 3 HOH 14 25 25 HOH HOH A . E 3 HOH 15 31 31 HOH HOH A . E 3 HOH 16 32 32 HOH HOH A . E 3 HOH 17 36 36 HOH HOH A . F 3 HOH 1 1 1 HOH HOH B . F 3 HOH 2 3 3 HOH HOH B . F 3 HOH 3 9 9 HOH HOH B . F 3 HOH 4 11 11 HOH HOH B . F 3 HOH 5 13 13 HOH HOH B . F 3 HOH 6 18 18 HOH HOH B . F 3 HOH 7 20 20 HOH HOH B . F 3 HOH 8 21 21 HOH HOH B . F 3 HOH 9 22 22 HOH HOH B . F 3 HOH 10 23 23 HOH HOH B . F 3 HOH 11 24 24 HOH HOH B . F 3 HOH 12 26 26 HOH HOH B . F 3 HOH 13 27 27 HOH HOH B . F 3 HOH 14 28 28 HOH HOH B . F 3 HOH 15 29 29 HOH HOH B . F 3 HOH 16 30 30 HOH HOH B . F 3 HOH 17 33 33 HOH HOH B . F 3 HOH 18 34 34 HOH HOH B . F 3 HOH 19 35 35 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 276 ? MET SELENOMETHIONINE 2 A MSE 150 A MSE 399 ? MET SELENOMETHIONINE 3 B MSE 27 B MSE 276 ? MET SELENOMETHIONINE 4 B MSE 150 B MSE 399 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1420 ? 1 MORE -12 ? 1 'SSA (A^2)' 17770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? B CYS 81 ? B CYS 330 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 109 ? B CYS 358 ? 1_555 104.2 ? 2 SG ? B CYS 81 ? B CYS 330 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 106 ? B CYS 355 ? 1_555 116.3 ? 3 SG ? B CYS 109 ? B CYS 358 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 106 ? B CYS 355 ? 1_555 114.6 ? 4 SG ? B CYS 81 ? B CYS 330 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 84 ? B CYS 333 ? 1_555 112.0 ? 5 SG ? B CYS 109 ? B CYS 358 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 84 ? B CYS 333 ? 1_555 109.7 ? 6 SG ? B CYS 106 ? B CYS 355 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 84 ? B CYS 333 ? 1_555 100.2 ? 7 SG ? A CYS 109 ? A CYS 358 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 106 ? A CYS 355 ? 1_555 120.7 ? 8 SG ? A CYS 109 ? A CYS 358 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 81 ? A CYS 330 ? 1_555 106.9 ? 9 SG ? A CYS 106 ? A CYS 355 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 81 ? A CYS 330 ? 1_555 89.4 ? 10 SG ? A CYS 109 ? A CYS 358 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 84 ? A CYS 333 ? 1_555 122.3 ? 11 SG ? A CYS 106 ? A CYS 355 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 84 ? A CYS 333 ? 1_555 100.0 ? 12 SG ? A CYS 81 ? A CYS 330 ? 1_555 ZN ? C ZN . ? A ZN 501 ? 1_555 SG ? A CYS 84 ? A CYS 333 ? 1_555 112.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 DM . ? ? ? ? phasing ? ? ? 10 SOLVE . ? ? ? ? phasing ? ? ? 11 RESOLVE . ? ? ? ? phasing ? ? ? 12 HKL-3000 . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N B ALA 291 ? ? CA B ALA 291 ? ? 2.666 1.459 1.207 0.020 N 2 1 CA B VAL 296 ? ? C B VAL 296 ? ? 2.846 1.525 1.321 0.026 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C B ILE 290 ? ? N B ALA 291 ? ? CA B ALA 291 ? ? 104.90 121.70 -16.80 2.50 Y 2 1 N B ALA 291 ? ? CA B ALA 291 ? ? CB B ALA 291 ? ? 94.47 110.10 -15.63 1.40 N 3 1 CB B VAL 296 ? ? CA B VAL 296 ? ? C B VAL 296 ? ? 98.06 111.40 -13.34 1.90 N 4 1 N B VAL 296 ? ? CA B VAL 296 ? ? C B VAL 296 ? ? 78.95 111.00 -32.05 2.70 N 5 1 CA B VAL 296 ? ? C B VAL 296 ? ? N B ALA 297 ? ? 81.88 117.20 -35.32 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 291 ? ? -66.86 22.48 2 1 ASP A 292 ? ? 48.63 -91.54 3 1 SER A 293 ? ? 62.09 -40.30 4 1 ALA A 297 ? ? -176.15 143.03 5 1 LEU A 321 ? ? -56.25 106.14 6 1 VAL A 332 ? ? -128.76 -57.32 7 1 ASP A 391 ? ? -116.91 -75.57 8 1 PHE A 402 ? ? -76.54 23.34 9 1 ALA A 407 ? ? -170.94 138.70 10 1 ASP B 292 ? ? -167.22 116.81 11 1 VAL B 296 ? ? -112.22 -164.15 12 1 ALA B 297 ? ? -173.20 147.23 13 1 ASP B 320 ? ? -92.28 32.51 14 1 SER B 331 ? ? -69.91 6.92 15 1 VAL B 332 ? ? -135.39 -84.85 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id VAL _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 296 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -24.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 250 ? A SER 1 2 1 Y 1 A ASN 251 ? A ASN 2 3 1 Y 1 A GLY 346 ? A GLY 97 4 1 Y 1 A GLU 347 ? A GLU 98 5 1 Y 1 B SER 250 ? B SER 1 6 1 Y 1 B ASN 251 ? B ASN 2 7 1 Y 1 B GLY 346 ? B GLY 97 8 1 Y 1 B GLU 347 ? B GLU 98 9 1 Y 1 B THR 390 ? B THR 141 10 1 Y 1 B ASP 391 ? B ASP 142 11 1 Y 1 B PHE 392 ? B PHE 143 12 1 Y 1 B ASP 393 ? B ASP 144 13 1 Y 1 B GLU 394 ? B GLU 145 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # _pdbx_reflns_twin.domain_id 1 _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 _pdbx_reflns_twin.type ? _pdbx_reflns_twin.operator h,-h-k,-l _pdbx_reflns_twin.fraction 0.500 #