HEADER OXIDOREDUCTASE 02-SEP-09 3IWA TITLE CRYSTAL STRUCTURE OF A FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE TITLE 2 OXIDOREDUCTASE FROM DESULFOVIBRIO VULGARIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE COMPND 3 OXIDOREDUCTASE; COMPND 4 CHAIN: A; COMPND 5 EC: 1.6.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 391774; SOURCE 4 STRAIN: DP4; SOURCE 5 GENE: DVUL_0176; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, OXIDOREDUCTASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.FREEMAN,K.T.BAIN,M.IIZUKA,R.ROMERO,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3IWA 1 REMARK REVDAT 5 10-FEB-21 3IWA 1 AUTHOR JRNL REMARK REVDAT 4 21-NOV-18 3IWA 1 AUTHOR REVDAT 3 01-NOV-17 3IWA 1 REMARK REVDAT 2 13-JUL-11 3IWA 1 VERSN REVDAT 1 06-OCT-09 3IWA 0 JRNL AUTH J.B.BONANNO,J.FREEMAN,K.T.BAIN,M.IIZUKA,R.ROMERO, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A FAD-DEPENDENT PYRIDINE JRNL TITL 2 NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FROM DESULFOVIBRIO JRNL TITL 3 VULGARIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : 1.82000 REMARK 3 B33 (A**2) : -2.72000 REMARK 3 B12 (A**2) : 0.91000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2965 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1924 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.485 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4726 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 6.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;35.723 ;24.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;15.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3351 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 0.918 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 820 ; 0.151 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3158 ; 1.723 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 995 ; 2.337 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 3.778 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 32.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE PH 5.5, 8% PEG REMARK 280 8K, 200MM CALCIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 63.78200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.82455 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.57100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 63.78200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.82455 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.57100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 63.78200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.82455 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.57100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 63.78200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.82455 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.57100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 63.78200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.82455 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.57100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 63.78200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.82455 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.57100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.64911 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 105.14200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 73.64911 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 105.14200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 73.64911 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 105.14200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 73.64911 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 105.14200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 73.64911 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 105.14200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 73.64911 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 105.14200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LEU A 2 REMARK 465 SER A 37 REMARK 465 ARG A 38 REMARK 465 ILE A 39 REMARK 465 SER A 40 REMARK 465 TYR A 41 REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 CYS A 44 REMARK 465 GLY A 45 REMARK 465 ILE A 46 REMARK 465 PRO A 47 REMARK 465 TYR A 48 REMARK 465 TYR A 49 REMARK 465 VAL A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 VAL A 54 REMARK 465 SER A 55 REMARK 465 ASN A 56 REMARK 465 ILE A 57 REMARK 465 GLU A 58 REMARK 465 SER A 59 REMARK 465 LEU A 60 REMARK 465 GLN A 61 REMARK 465 ALA A 62 REMARK 465 THR A 63 REMARK 465 PRO A 64 REMARK 465 TYR A 65 REMARK 465 ASN A 66 REMARK 465 VAL A 67 REMARK 465 VAL A 68 REMARK 465 ARG A 69 REMARK 465 ASP A 70 REMARK 465 PRO A 71 REMARK 465 GLU A 72 REMARK 465 PHE A 73 REMARK 465 PHE A 74 REMARK 465 ARG A 75 REMARK 465 ILE A 76 REMARK 465 ASN A 77 REMARK 465 LYS A 78 REMARK 465 ASP A 79 REMARK 465 PHE A 373 REMARK 465 ASP A 374 REMARK 465 ARG A 375 REMARK 465 ALA A 376 REMARK 465 HIS A 377 REMARK 465 PHE A 378 REMARK 465 TYR A 379 REMARK 465 PRO A 380 REMARK 465 GLU A 381 REMARK 465 LYS A 382 REMARK 465 THR A 383 REMARK 465 TYR A 438 REMARK 465 SER A 439 REMARK 465 PRO A 440 REMARK 465 PRO A 441 REMARK 465 PHE A 442 REMARK 465 ALA A 443 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 GLY A 462 REMARK 465 ARG A 463 REMARK 465 GLU A 464 REMARK 465 GLY A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 80 CG1 CG2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 PHE A 168 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 231 CG OD1 ND2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 384 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -128.24 -117.11 REMARK 500 GLU A 85 44.30 39.09 REMARK 500 ALA A 119 65.95 -117.25 REMARK 500 ALA A 252 49.58 -140.05 REMARK 500 ASP A 329 46.05 -141.25 REMARK 500 LEU A 343 -159.21 -107.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 472 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 230 OE1 REMARK 620 2 GLU A 230 OE2 49.8 REMARK 620 3 HOH A 518 O 117.8 68.8 REMARK 620 4 HOH A 519 O 104.8 97.6 71.1 REMARK 620 5 HOH A 520 O 70.8 82.8 114.6 173.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 472 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11146G RELATED DB: TARGETDB DBREF 3IWA A 3 463 UNP A1V9T4 A1V9T4_DESVV 3 463 SEQADV 3IWA MET A 0 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA SER A 1 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA LEU A 2 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA GLU A 464 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA GLY A 465 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 466 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 467 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 468 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 469 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 470 UNP A1V9T4 EXPRESSION TAG SEQADV 3IWA HIS A 471 UNP A1V9T4 EXPRESSION TAG SEQRES 1 A 472 MET SER LEU LYS HIS VAL VAL VAL ILE GLY ALA VAL ALA SEQRES 2 A 472 LEU GLY PRO LYS ALA ALA CYS ARG PHE LYS ARG LEU ASP SEQRES 3 A 472 PRO GLU ALA HIS VAL THR MET ILE ASP GLN ALA SER ARG SEQRES 4 A 472 ILE SER TYR GLY GLY CYS GLY ILE PRO TYR TYR VAL SER SEQRES 5 A 472 GLY GLU VAL SER ASN ILE GLU SER LEU GLN ALA THR PRO SEQRES 6 A 472 TYR ASN VAL VAL ARG ASP PRO GLU PHE PHE ARG ILE ASN SEQRES 7 A 472 LYS ASP VAL GLU ALA LEU VAL GLU THR ARG ALA HIS ALA SEQRES 8 A 472 ILE ASP ARG ALA ALA HIS THR VAL GLU ILE GLU ASN LEU SEQRES 9 A 472 ARG THR GLY GLU ARG ARG THR LEU LYS TYR ASP LYS LEU SEQRES 10 A 472 VAL LEU ALA LEU GLY SER LYS ALA ASN ARG PRO PRO VAL SEQRES 11 A 472 GLU GLY MET ASP LEU ALA GLY VAL THR PRO VAL THR ASN SEQRES 12 A 472 LEU ASP GLU ALA GLU PHE VAL GLN HIS ALA ILE SER ALA SEQRES 13 A 472 GLY GLU VAL SER LYS ALA VAL ILE VAL GLY GLY GLY PHE SEQRES 14 A 472 ILE GLY LEU GLU MET ALA VAL SER LEU ALA ASP MET TRP SEQRES 15 A 472 GLY ILE ASP THR THR VAL VAL GLU LEU ALA ASP GLN ILE SEQRES 16 A 472 MET PRO GLY PHE THR SER LYS SER LEU SER GLN MET LEU SEQRES 17 A 472 ARG HIS ASP LEU GLU LYS ASN ASP VAL VAL VAL HIS THR SEQRES 18 A 472 GLY GLU LYS VAL VAL ARG LEU GLU GLY GLU ASN GLY LYS SEQRES 19 A 472 VAL ALA ARG VAL ILE THR ASP LYS ARG THR LEU ASP ALA SEQRES 20 A 472 ASP LEU VAL ILE LEU ALA ALA GLY VAL SER PRO ASN THR SEQRES 21 A 472 GLN LEU ALA ARG ASP ALA GLY LEU GLU LEU ASP PRO ARG SEQRES 22 A 472 GLY ALA ILE ILE VAL ASP THR ARG MET ARG THR SER ASP SEQRES 23 A 472 PRO ASP ILE PHE ALA GLY GLY ASP CYS VAL THR ILE PRO SEQRES 24 A 472 ASN LEU VAL THR GLY LYS PRO GLY PHE PHE PRO LEU GLY SEQRES 25 A 472 SER MET ALA ASN ARG GLN GLY ARG VAL ILE GLY THR ASN SEQRES 26 A 472 LEU ALA ASP GLY ASP ALA THR PHE PRO GLY ALA VAL GLY SEQRES 27 A 472 SER TRP ALA VAL LYS LEU PHE GLU GLY SER ALA SER GLY SEQRES 28 A 472 ALA GLY LEU THR VAL GLU GLY ALA LEU ARG GLU GLY TYR SEQRES 29 A 472 ASP ALA VAL ASN VAL HIS VAL GLU GLN PHE ASP ARG ALA SEQRES 30 A 472 HIS PHE TYR PRO GLU LYS THR ILE MET THR LEU GLN LEU SEQRES 31 A 472 VAL VAL ASP ARG PRO THR ARG ARG VAL LEU GLY ILE GLN SEQRES 32 A 472 GLY PHE SER THR LEU GLY ASP ALA LEU THR ALA ARG ILE SEQRES 33 A 472 ASN ALA VAL ALA THR MET LEU ALA SER LYS PRO THR VAL SEQRES 34 A 472 GLU ASP ILE SER ASN ALA GLU VAL VAL TYR SER PRO PRO SEQRES 35 A 472 PHE ALA SER ALA MET ASP ILE VAL ASN VAL ALA GLY ASN SEQRES 36 A 472 VAL ALA ASP ASN VAL LEU ALA GLY ARG GLU GLY HIS HIS SEQRES 37 A 472 HIS HIS HIS HIS HET CA A 472 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *48(H2 O) HELIX 1 1 ALA A 12 ASP A 25 1 14 HELIX 2 2 ASN A 142 ILE A 153 1 12 HELIX 3 3 GLY A 167 GLY A 182 1 16 HELIX 4 4 SER A 200 ASN A 214 1 15 HELIX 5 5 THR A 259 GLY A 266 1 8 HELIX 6 6 SER A 312 ALA A 326 1 15 HELIX 7 7 THR A 354 GLU A 361 1 8 HELIX 8 8 LEU A 407 ALA A 423 1 17 HELIX 9 9 THR A 427 ASN A 433 1 7 HELIX 10 10 ASP A 447 ALA A 461 1 15 SHEET 1 A 5 GLU A 81 LEU A 83 0 SHEET 2 A 5 HIS A 29 ILE A 33 1 N MET A 32 O LEU A 83 SHEET 3 A 5 HIS A 4 ILE A 8 1 N VAL A 7 O THR A 31 SHEET 4 A 5 LYS A 115 LEU A 118 1 O VAL A 117 N ILE A 8 SHEET 5 A 5 ILE A 288 ALA A 290 1 O PHE A 289 N LEU A 116 SHEET 1 B 3 THR A 86 ASP A 92 0 SHEET 2 B 3 THR A 97 ASN A 102 -1 O GLU A 99 N HIS A 89 SHEET 3 B 3 ARG A 108 LYS A 112 -1 O ARG A 109 N ILE A 100 SHEET 1 C 2 SER A 122 ALA A 124 0 SHEET 2 C 2 VAL A 255 PRO A 257 -1 O SER A 256 N LYS A 123 SHEET 1 D 5 VAL A 137 PRO A 139 0 SHEET 2 D 5 LEU A 248 LEU A 251 1 O VAL A 249 N THR A 138 SHEET 3 D 5 LYS A 160 VAL A 164 1 N VAL A 164 O ILE A 250 SHEET 4 D 5 ASP A 184 VAL A 188 1 O THR A 186 N ILE A 163 SHEET 5 D 5 VAL A 217 HIS A 219 1 O VAL A 217 N VAL A 187 SHEET 1 E 3 VAL A 224 GLY A 229 0 SHEET 2 E 3 VAL A 234 THR A 239 -1 O ILE A 238 N ARG A 226 SHEET 3 E 3 THR A 243 ASP A 245 -1 O LEU A 244 N VAL A 237 SHEET 1 F 3 ILE A 275 ILE A 276 0 SHEET 2 F 3 VAL A 295 PRO A 298 1 O THR A 296 N ILE A 275 SHEET 3 F 3 PRO A 305 GLY A 306 -1 O GLY A 306 N ILE A 297 SHEET 1 G 5 TRP A 339 LYS A 342 0 SHEET 2 G 5 SER A 347 GLY A 352 -1 O ALA A 348 N VAL A 341 SHEET 3 G 5 VAL A 398 SER A 405 -1 O SER A 405 N SER A 347 SHEET 4 G 5 MET A 385 ASP A 392 -1 N VAL A 390 O LEU A 399 SHEET 5 G 5 ALA A 365 GLU A 371 -1 N VAL A 368 O LEU A 389 LINK OE1 GLU A 230 CA CA A 472 1555 1555 2.43 LINK OE2 GLU A 230 CA CA A 472 1555 1555 2.73 LINK CA CA A 472 O HOH A 518 1555 1555 2.39 LINK CA CA A 472 O HOH A 519 1555 1555 2.67 LINK CA CA A 472 O HOH A 520 1555 1555 2.46 SITE 1 AC1 6 LEU A 24 ASP A 25 GLU A 230 HOH A 518 SITE 2 AC1 6 HOH A 519 HOH A 520 CRYST1 127.564 127.564 157.713 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007839 0.004526 0.000000 0.00000 SCALE2 0.000000 0.009052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006341 0.00000