data_3IY4 # _entry.id 3IY4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IY4 RCSB RCSB160010 WWPDB D_1000160010 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5109 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details 'the cryoEM reconstruction of the virus-Fab 15 complex' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IY4 _pdbx_database_status.recvd_initial_deposition_date 2009-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hafenstein, S.' 1 'Bowman, V.D.' 2 'Sun, T.' 3 'Nelson, C.D.' 4 'Palermo, L.M.' 5 'Chipman, P.R.' 6 'Battisti, A.J.' 7 'Parrish, C.R.' 8 'Rossmann, M.G.' 9 # _citation.id primary _citation.title 'Structural comparison of different antibodies interacting with parvovirus capsids' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 5556 _citation.page_last 5566 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321620 _citation.pdbx_database_id_DOI 10.1128/JVI.02532-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hafenstein, S.' 1 primary 'Bowman, V.D.' 2 primary 'Sun, T.' 3 primary 'Nelson, C.D.' 4 primary 'Palermo, L.M.' 5 primary 'Chipman, P.R.' 6 primary 'Battisti, A.J.' 7 primary 'Parrish, C.R.' 8 primary 'Rossmann, M.G.' 9 # _cell.entry_id 3IY4 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IY4 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'fragment of neutralizing antibody 15 (light chain)' 11970.164 1 ? ? 'fragment of neutralizing antibody 15' ? 2 polymer nat 'fragment of neutralizing antibody 15 (heavy chain)' 12367.916 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LMTQIPASLAVSLGQRATISCKASQSVDYEGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPV EEEDAATYYCQQSNGDPYTFGGGTKLDTKRA ; ;LMTQIPASLAVSLGQRATISCKASQSVDYEGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPV EEEDAATYYCQQSNGDPYTFGGGTKLDTKRA ; A ? 2 'polypeptide(L)' no no ;SGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGEGLKWMGWINTSSGKATYADDFKGRFAFSLKPSASTAYLQINNL KNEDMATYFCARLGYRSYFDFWGQGTTLTVS ; ;SGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGEGLKWMGWINTSSGKATYADDFKGRFAFSLKPSASTAYLQINNL KNEDMATYFCARLGYRSYFDFWGQGTTLTVS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 THR n 1 4 GLN n 1 5 ILE n 1 6 PRO n 1 7 ALA n 1 8 SER n 1 9 LEU n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 LEU n 1 14 GLY n 1 15 GLN n 1 16 ARG n 1 17 ALA n 1 18 THR n 1 19 ILE n 1 20 SER n 1 21 CYS n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 GLN n 1 26 SER n 1 27 VAL n 1 28 ASP n 1 29 TYR n 1 30 GLU n 1 31 GLY n 1 32 ASP n 1 33 SER n 1 34 TYR n 1 35 MET n 1 36 ASN n 1 37 TRP n 1 38 TYR n 1 39 GLN n 1 40 GLN n 1 41 LYS n 1 42 PRO n 1 43 GLY n 1 44 GLN n 1 45 PRO n 1 46 PRO n 1 47 LYS n 1 48 LEU n 1 49 LEU n 1 50 ILE n 1 51 TYR n 1 52 ALA n 1 53 ALA n 1 54 SER n 1 55 ASN n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 GLY n 1 60 ILE n 1 61 PRO n 1 62 ALA n 1 63 ARG n 1 64 PHE n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 SER n 1 70 GLY n 1 71 THR n 1 72 ASP n 1 73 PHE n 1 74 THR n 1 75 LEU n 1 76 ASN n 1 77 ILE n 1 78 HIS n 1 79 PRO n 1 80 VAL n 1 81 GLU n 1 82 GLU n 1 83 GLU n 1 84 ASP n 1 85 ALA n 1 86 ALA n 1 87 THR n 1 88 TYR n 1 89 TYR n 1 90 CYS n 1 91 GLN n 1 92 GLN n 1 93 SER n 1 94 ASN n 1 95 GLY n 1 96 ASP n 1 97 PRO n 1 98 TYR n 1 99 THR n 1 100 PHE n 1 101 GLY n 1 102 GLY n 1 103 GLY n 1 104 THR n 1 105 LYS n 1 106 LEU n 1 107 ASP n 1 108 THR n 1 109 LYS n 1 110 ARG n 1 111 ALA n 2 1 SER n 2 2 GLY n 2 3 PRO n 2 4 GLU n 2 5 LEU n 2 6 LYS n 2 7 LYS n 2 8 PRO n 2 9 GLY n 2 10 GLU n 2 11 THR n 2 12 VAL n 2 13 LYS n 2 14 ILE n 2 15 SER n 2 16 CYS n 2 17 LYS n 2 18 ALA n 2 19 SER n 2 20 GLY n 2 21 TYR n 2 22 THR n 2 23 PHE n 2 24 THR n 2 25 ASN n 2 26 TYR n 2 27 GLY n 2 28 MET n 2 29 ASN n 2 30 TRP n 2 31 VAL n 2 32 LYS n 2 33 GLN n 2 34 ALA n 2 35 PRO n 2 36 GLY n 2 37 GLU n 2 38 GLY n 2 39 LEU n 2 40 LYS n 2 41 TRP n 2 42 MET n 2 43 GLY n 2 44 TRP n 2 45 ILE n 2 46 ASN n 2 47 THR n 2 48 SER n 2 49 SER n 2 50 GLY n 2 51 LYS n 2 52 ALA n 2 53 THR n 2 54 TYR n 2 55 ALA n 2 56 ASP n 2 57 ASP n 2 58 PHE n 2 59 LYS n 2 60 GLY n 2 61 ARG n 2 62 PHE n 2 63 ALA n 2 64 PHE n 2 65 SER n 2 66 LEU n 2 67 LYS n 2 68 PRO n 2 69 SER n 2 70 ALA n 2 71 SER n 2 72 THR n 2 73 ALA n 2 74 TYR n 2 75 LEU n 2 76 GLN n 2 77 ILE n 2 78 ASN n 2 79 ASN n 2 80 LEU n 2 81 LYS n 2 82 ASN n 2 83 GLU n 2 84 ASP n 2 85 MET n 2 86 ALA n 2 87 THR n 2 88 TYR n 2 89 PHE n 2 90 CYS n 2 91 ALA n 2 92 ARG n 2 93 LEU n 2 94 GLY n 2 95 TYR n 2 96 ARG n 2 97 SER n 2 98 TYR n 2 99 PHE n 2 100 ASP n 2 101 PHE n 2 102 TRP n 2 103 GLY n 2 104 GLN n 2 105 GLY n 2 106 THR n 2 107 THR n 2 108 LEU n 2 109 THR n 2 110 VAL n 2 111 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3IY4 3IY4 1 ? ? ? 2 PDB 3IY4 3IY4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IY4 A 1 ? 111 ? 3IY4 1 ? 111 ? 1 111 2 2 3IY4 B 1 ? 111 ? 3IY4 112 ? 222 ? 112 222 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IY4 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1713 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1713 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3IY4 _struct.title 'Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex' _struct.pdbx_descriptor 'FAB 15' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IY4 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'cryoEM, neutralizing antibody, parvovirus, canine, feline, fab footprint, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 81 ? ALA A 85 ? GLU A 81 ALA A 85 5 ? 5 HELX_P HELX_P2 2 ASP B 56 ? LYS B 59 ? ASP B 167 LYS B 170 5 ? 4 HELX_P HELX_P3 3 LYS B 81 ? MET B 85 ? LYS B 192 MET B 196 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 21 A CYS 90 1_555 ? ? ? ? ? ? ? 2.522 ? disulf2 disulf ? ? B CYS 16 SG ? ? ? 1_555 B CYS 90 SG ? ? B CYS 127 B CYS 201 1_555 ? ? ? ? ? ? ? 2.512 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 5 A . ? ILE 5 A PRO 6 A ? PRO 6 A 1 2.60 2 ASP 96 A . ? ASP 96 A PRO 97 A ? PRO 97 A 1 1.84 3 PHE 101 B . ? PHE 212 B TRP 102 B ? TRP 213 B 1 25.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 2 ? E ? 6 ? F ? 4 ? G ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? ILE A 5 ? MET A 2 ILE A 5 A 2 ALA A 17 ? ALA A 23 ? ALA A 17 ALA A 23 A 3 ASP A 72 ? ILE A 77 ? ASP A 72 ILE A 77 A 4 PHE A 64 ? SER A 69 ? PHE A 64 SER A 69 B 1 SER A 8 ? SER A 12 ? SER A 8 SER A 12 B 2 THR A 104 ? LYS A 109 ? THR A 104 LYS A 109 B 3 ALA A 86 ? GLN A 92 ? ALA A 86 GLN A 92 B 4 MET A 35 ? GLN A 40 ? MET A 35 GLN A 40 B 5 LYS A 47 ? TYR A 51 ? LYS A 47 TYR A 51 B 6 ASN A 55 ? LEU A 56 ? ASN A 55 LEU A 56 C 1 SER A 8 ? SER A 12 ? SER A 8 SER A 12 C 2 THR A 104 ? LYS A 109 ? THR A 104 LYS A 109 C 3 ALA A 86 ? GLN A 92 ? ALA A 86 GLN A 92 C 4 THR A 99 ? PHE A 100 ? THR A 99 PHE A 100 D 1 ASP A 28 ? TYR A 29 ? ASP A 28 TYR A 29 D 2 ASP A 32 ? SER A 33 ? ASP A 32 SER A 33 E 1 GLU B 4 ? LYS B 6 ? GLU B 115 LYS B 117 E 2 THR B 107 ? VAL B 110 ? THR B 218 VAL B 221 E 3 ALA B 86 ? GLY B 94 ? ALA B 197 GLY B 205 E 4 MET B 28 ? GLN B 33 ? MET B 139 GLN B 144 E 5 LEU B 39 ? ASN B 46 ? LEU B 150 ASN B 157 E 6 LYS B 51 ? TYR B 54 ? LYS B 162 TYR B 165 F 1 GLU B 4 ? LYS B 6 ? GLU B 115 LYS B 117 F 2 THR B 107 ? VAL B 110 ? THR B 218 VAL B 221 F 3 ALA B 86 ? GLY B 94 ? ALA B 197 GLY B 205 F 4 TYR B 98 ? ASP B 100 ? TYR B 209 ASP B 211 G 1 THR B 11 ? LYS B 17 ? THR B 122 LYS B 128 G 2 THR B 72 ? ASN B 78 ? THR B 183 ASN B 189 G 3 PHE B 62 ? LYS B 67 ? PHE B 173 LYS B 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 3 ? N THR A 3 O LYS A 22 ? O LYS A 22 A 2 3 N ILE A 19 ? N ILE A 19 O LEU A 75 ? O LEU A 75 A 3 4 O THR A 74 ? O THR A 74 N SER A 67 ? N SER A 67 B 1 2 N VAL A 11 ? N VAL A 11 O LYS A 109 ? O LYS A 109 B 2 3 O LEU A 106 ? O LEU A 106 N ALA A 86 ? N ALA A 86 B 3 4 O TYR A 89 ? O TYR A 89 N TYR A 38 ? N TYR A 38 B 4 5 N GLN A 39 ? N GLN A 39 O LYS A 47 ? O LYS A 47 B 5 6 N TYR A 51 ? N TYR A 51 O ASN A 55 ? O ASN A 55 C 1 2 N VAL A 11 ? N VAL A 11 O LYS A 109 ? O LYS A 109 C 2 3 O LEU A 106 ? O LEU A 106 N ALA A 86 ? N ALA A 86 C 3 4 N GLN A 92 ? N GLN A 92 O THR A 99 ? O THR A 99 D 1 2 N TYR A 29 ? N TYR A 29 O ASP A 32 ? O ASP A 32 E 1 2 N GLU B 4 ? N GLU B 115 O THR B 109 ? O THR B 220 E 2 3 O LEU B 108 ? O LEU B 219 N ALA B 86 ? N ALA B 197 E 3 4 O THR B 87 ? O THR B 198 N GLN B 33 ? N GLN B 144 E 4 5 N LYS B 32 ? N LYS B 143 O LYS B 40 ? O LYS B 151 E 5 6 N TRP B 44 ? N TRP B 155 O THR B 53 ? O THR B 164 F 1 2 N GLU B 4 ? N GLU B 115 O THR B 109 ? O THR B 220 F 2 3 O LEU B 108 ? O LEU B 219 N ALA B 86 ? N ALA B 197 F 3 4 N GLY B 94 ? N GLY B 205 O TYR B 98 ? O TYR B 209 G 1 2 N ILE B 14 ? N ILE B 125 O LEU B 75 ? O LEU B 186 G 2 3 O TYR B 74 ? O TYR B 185 N SER B 65 ? N SER B 176 # _database_PDB_matrix.entry_id 3IY4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IY4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'Chirality errors at CA centers of ARG 63 of chain A and PHE 212 of chain B' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ALA 111 111 111 ALA ALA A . n B 2 1 SER 1 112 112 SER SER B . n B 2 2 GLY 2 113 113 GLY GLY B . n B 2 3 PRO 3 114 114 PRO PRO B . n B 2 4 GLU 4 115 115 GLU GLU B . n B 2 5 LEU 5 116 116 LEU LEU B . n B 2 6 LYS 6 117 117 LYS LYS B . n B 2 7 LYS 7 118 118 LYS LYS B . n B 2 8 PRO 8 119 119 PRO PRO B . n B 2 9 GLY 9 120 120 GLY GLY B . n B 2 10 GLU 10 121 121 GLU GLU B . n B 2 11 THR 11 122 122 THR THR B . n B 2 12 VAL 12 123 123 VAL VAL B . n B 2 13 LYS 13 124 124 LYS LYS B . n B 2 14 ILE 14 125 125 ILE ILE B . n B 2 15 SER 15 126 126 SER SER B . n B 2 16 CYS 16 127 127 CYS CYS B . n B 2 17 LYS 17 128 128 LYS LYS B . n B 2 18 ALA 18 129 129 ALA ALA B . n B 2 19 SER 19 130 130 SER SER B . n B 2 20 GLY 20 131 131 GLY GLY B . n B 2 21 TYR 21 132 132 TYR TYR B . n B 2 22 THR 22 133 133 THR THR B . n B 2 23 PHE 23 134 134 PHE PHE B . n B 2 24 THR 24 135 135 THR THR B . n B 2 25 ASN 25 136 136 ASN ASN B . n B 2 26 TYR 26 137 137 TYR TYR B . n B 2 27 GLY 27 138 138 GLY GLY B . n B 2 28 MET 28 139 139 MET MET B . n B 2 29 ASN 29 140 140 ASN ASN B . n B 2 30 TRP 30 141 141 TRP TRP B . n B 2 31 VAL 31 142 142 VAL VAL B . n B 2 32 LYS 32 143 143 LYS LYS B . n B 2 33 GLN 33 144 144 GLN GLN B . n B 2 34 ALA 34 145 145 ALA ALA B . n B 2 35 PRO 35 146 146 PRO PRO B . n B 2 36 GLY 36 147 147 GLY GLY B . n B 2 37 GLU 37 148 148 GLU GLU B . n B 2 38 GLY 38 149 149 GLY GLY B . n B 2 39 LEU 39 150 150 LEU LEU B . n B 2 40 LYS 40 151 151 LYS LYS B . n B 2 41 TRP 41 152 152 TRP TRP B . n B 2 42 MET 42 153 153 MET MET B . n B 2 43 GLY 43 154 154 GLY GLY B . n B 2 44 TRP 44 155 155 TRP TRP B . n B 2 45 ILE 45 156 156 ILE ILE B . n B 2 46 ASN 46 157 157 ASN ASN B . n B 2 47 THR 47 158 158 THR THR B . n B 2 48 SER 48 159 159 SER SER B . n B 2 49 SER 49 160 160 SER SER B . n B 2 50 GLY 50 161 161 GLY GLY B . n B 2 51 LYS 51 162 162 LYS LYS B . n B 2 52 ALA 52 163 163 ALA ALA B . n B 2 53 THR 53 164 164 THR THR B . n B 2 54 TYR 54 165 165 TYR TYR B . n B 2 55 ALA 55 166 166 ALA ALA B . n B 2 56 ASP 56 167 167 ASP ASP B . n B 2 57 ASP 57 168 168 ASP ASP B . n B 2 58 PHE 58 169 169 PHE PHE B . n B 2 59 LYS 59 170 170 LYS LYS B . n B 2 60 GLY 60 171 171 GLY GLY B . n B 2 61 ARG 61 172 172 ARG ARG B . n B 2 62 PHE 62 173 173 PHE PHE B . n B 2 63 ALA 63 174 174 ALA ALA B . n B 2 64 PHE 64 175 175 PHE PHE B . n B 2 65 SER 65 176 176 SER SER B . n B 2 66 LEU 66 177 177 LEU LEU B . n B 2 67 LYS 67 178 178 LYS LYS B . n B 2 68 PRO 68 179 179 PRO PRO B . n B 2 69 SER 69 180 180 SER SER B . n B 2 70 ALA 70 181 181 ALA ALA B . n B 2 71 SER 71 182 182 SER SER B . n B 2 72 THR 72 183 183 THR THR B . n B 2 73 ALA 73 184 184 ALA ALA B . n B 2 74 TYR 74 185 185 TYR TYR B . n B 2 75 LEU 75 186 186 LEU LEU B . n B 2 76 GLN 76 187 187 GLN GLN B . n B 2 77 ILE 77 188 188 ILE ILE B . n B 2 78 ASN 78 189 189 ASN ASN B . n B 2 79 ASN 79 190 190 ASN ASN B . n B 2 80 LEU 80 191 191 LEU LEU B . n B 2 81 LYS 81 192 192 LYS LYS B . n B 2 82 ASN 82 193 193 ASN ASN B . n B 2 83 GLU 83 194 194 GLU GLU B . n B 2 84 ASP 84 195 195 ASP ASP B . n B 2 85 MET 85 196 196 MET MET B . n B 2 86 ALA 86 197 197 ALA ALA B . n B 2 87 THR 87 198 198 THR THR B . n B 2 88 TYR 88 199 199 TYR TYR B . n B 2 89 PHE 89 200 200 PHE PHE B . n B 2 90 CYS 90 201 201 CYS CYS B . n B 2 91 ALA 91 202 202 ALA ALA B . n B 2 92 ARG 92 203 203 ARG ARG B . n B 2 93 LEU 93 204 204 LEU LEU B . n B 2 94 GLY 94 205 205 GLY GLY B . n B 2 95 TYR 95 206 206 TYR TYR B . n B 2 96 ARG 96 207 207 ARG ARG B . n B 2 97 SER 97 208 208 SER SER B . n B 2 98 TYR 98 209 209 TYR TYR B . n B 2 99 PHE 99 210 210 PHE PHE B . n B 2 100 ASP 100 211 211 ASP ASP B . n B 2 101 PHE 101 212 212 PHE PHE B . n B 2 102 TRP 102 213 213 TRP TRP B . n B 2 103 GLY 103 214 214 GLY GLY B . n B 2 104 GLN 104 215 215 GLN GLN B . n B 2 105 GLY 105 216 216 GLY GLY B . n B 2 106 THR 106 217 217 THR THR B . n B 2 107 THR 107 218 218 THR THR B . n B 2 108 LEU 108 219 219 LEU LEU B . n B 2 109 THR 109 220 220 THR THR B . n B 2 110 VAL 110 221 221 VAL VAL B . n B 2 111 SER 111 222 222 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_reconstruction.entry_id 3IY4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.resolution 11.7 _em_3d_reconstruction.num_particles 4798 _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details '10mM Tris-HCL' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Fab fragment from MAb 15 interacting with feline panleukopenia virus (FPV)' COMPLEX 0 ? ? ? 2 'feline panleukopenia virus' VIRUS 1 FPV ? ? # _em_image_scans.entry_id 3IY4 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 50 _em_image_scans.scanner_model 'ZEISS SCAI' _em_image_scans.sampling_size 7 _em_image_scans.od_range 0.9 _em_image_scans.quant_bit_size ? _em_image_scans.details ? _em_image_scans.citation_id ? # _em_imaging.entry_id 3IY4 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM300FEG/T' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.specimen_holder_type 'side mounted nitrogen cooled' _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.accelerating_voltage 300 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_defocus_min 0.9 _em_imaging.nominal_defocus_max 3.4 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification 47190 _em_imaging.temperature 93 _em_imaging.recording_temperature_minimum 83 _em_imaging.recording_temperature_maximum 83 _em_imaging.detector_distance 0.0 _em_imaging.date 2004-03-29 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism 'astigmatism was corrected at 100,000 times magnification' _em_imaging.details ? _em_imaging.nominal_cs ? _em_imaging.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3IY4 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp 120 _em_vitrification.method 'blot before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.details ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 3IY4 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3IY4 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A HIS 78 ? ? CD2 A HIS 78 ? ? 1.472 1.354 0.118 0.009 N 2 1 CG A HIS 78 ? ? ND1 A HIS 78 ? ? 1.254 1.369 -0.115 0.015 N 3 1 CA B THR 122 ? ? CB B THR 122 ? ? 1.348 1.529 -0.181 0.026 N 4 1 CE1 B PHE 169 ? ? CZ B PHE 169 ? ? 1.182 1.369 -0.187 0.019 N 5 1 CE2 B PHE 169 ? ? CD2 B PHE 169 ? ? 1.224 1.388 -0.164 0.020 N 6 1 CA B SER 180 ? ? CB B SER 180 ? ? 1.791 1.525 0.266 0.015 N 7 1 CB B SER 180 ? ? OG B SER 180 ? ? 1.646 1.418 0.228 0.013 N 8 1 NE1 B TRP 213 ? ? CE2 B TRP 213 ? ? 1.100 1.371 -0.271 0.013 N 9 1 CE2 B TRP 213 ? ? CD2 B TRP 213 ? ? 1.329 1.409 -0.080 0.012 N 10 1 CD2 B TRP 213 ? ? CE3 B TRP 213 ? ? 1.267 1.399 -0.132 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A ARG 63 ? ? CB A ARG 63 ? ? CG A ARG 63 ? ? 96.92 113.40 -16.48 2.20 N 2 1 CA A ARG 63 ? ? C A ARG 63 ? ? O A ARG 63 ? ? 134.44 120.10 14.34 2.10 N 3 1 CA A ARG 63 ? ? C A ARG 63 ? ? N A PHE 64 ? ? 94.43 117.20 -22.77 2.20 Y 4 1 CG A HIS 78 ? ? ND1 A HIS 78 ? ? CE1 A HIS 78 ? ? 82.50 105.70 -23.20 1.30 N 5 1 ND1 A HIS 78 ? ? CE1 A HIS 78 ? ? NE2 A HIS 78 ? ? 127.30 111.50 15.80 1.30 N 6 1 CE1 A HIS 78 ? ? NE2 A HIS 78 ? ? CD2 A HIS 78 ? ? 71.36 106.60 -35.24 2.50 N 7 1 C A HIS 78 ? ? N A PRO 79 ? ? CD A PRO 79 ? ? 97.52 128.40 -30.88 2.10 Y 8 1 CA A PRO 79 ? ? N A PRO 79 ? ? CD A PRO 79 ? ? 90.59 111.70 -21.11 1.40 N 9 1 CB A PRO 79 ? ? CG A PRO 79 ? ? CD A PRO 79 ? ? 79.13 106.50 -27.37 3.90 N 10 1 N A PRO 79 ? ? CD A PRO 79 ? ? CG A PRO 79 ? ? 123.37 103.20 20.17 1.50 N 11 1 CD B LYS 118 ? ? CE B LYS 118 ? ? NZ B LYS 118 ? ? 134.11 111.70 22.41 2.30 N 12 1 CB B GLU 121 ? ? CA B GLU 121 ? ? C B GLU 121 ? ? 122.76 110.40 12.36 2.00 N 13 1 CA B THR 122 ? ? CB B THR 122 ? ? OG1 B THR 122 ? ? 87.37 109.00 -21.63 2.10 N 14 1 CB B ILE 125 ? ? CA B ILE 125 ? ? C B ILE 125 ? ? 132.47 111.60 20.87 2.00 N 15 1 CA B ILE 125 ? ? CB B ILE 125 ? ? CG2 B ILE 125 ? ? 137.28 110.90 26.38 2.00 N 16 1 CA B SER 130 ? ? C B SER 130 ? ? N B GLY 131 ? ? 102.89 116.20 -13.31 2.00 Y 17 1 O B SER 130 ? ? C B SER 130 ? ? N B GLY 131 ? ? 134.55 123.20 11.35 1.70 Y 18 1 CB B ILE 156 ? ? CA B ILE 156 ? ? C B ILE 156 ? ? 93.78 111.60 -17.82 2.00 N 19 1 N B ILE 156 ? ? CA B ILE 156 ? ? CB B ILE 156 ? ? 129.80 110.80 19.00 2.30 N 20 1 CA B ILE 156 ? ? CB B ILE 156 ? ? CG1 B ILE 156 ? ? 122.99 111.00 11.99 1.90 N 21 1 CA B ILE 156 ? ? CB B ILE 156 ? ? CG2 B ILE 156 ? ? 125.47 110.90 14.57 2.00 N 22 1 N B THR 158 ? ? CA B THR 158 ? ? CB B THR 158 ? ? 91.45 110.30 -18.85 1.90 N 23 1 CD1 B PHE 169 ? ? CG B PHE 169 ? ? CD2 B PHE 169 ? ? 126.66 118.30 8.36 1.30 N 24 1 CB B PHE 169 ? ? CG B PHE 169 ? ? CD1 B PHE 169 ? ? 115.07 120.80 -5.73 0.70 N 25 1 CD1 B PHE 169 ? ? CE1 B PHE 169 ? ? CZ B PHE 169 ? ? 98.77 120.10 -21.33 1.20 N 26 1 CE1 B PHE 169 ? ? CZ B PHE 169 ? ? CE2 B PHE 169 ? ? 143.12 120.00 23.12 1.80 N 27 1 CZ B PHE 169 ? ? CE2 B PHE 169 ? ? CD2 B PHE 169 ? ? 103.63 120.10 -16.47 1.20 N 28 1 CB B PHE 173 ? ? CG B PHE 173 ? ? CD1 B PHE 173 ? ? 125.31 120.80 4.51 0.70 N 29 1 CB B PHE 175 ? ? CA B PHE 175 ? ? C B PHE 175 ? ? 98.27 110.40 -12.13 2.00 N 30 1 N B PHE 175 ? ? CA B PHE 175 ? ? CB B PHE 175 ? ? 89.38 110.60 -21.22 1.80 N 31 1 CB B PHE 175 ? ? CG B PHE 175 ? ? CD2 B PHE 175 ? ? 114.73 120.80 -6.07 0.70 N 32 1 CB B PHE 175 ? ? CG B PHE 175 ? ? CD1 B PHE 175 ? ? 125.28 120.80 4.48 0.70 N 33 1 CD B LYS 178 ? ? CE B LYS 178 ? ? NZ B LYS 178 ? ? 128.41 111.70 16.71 2.30 N 34 1 CB B SER 180 ? ? CA B SER 180 ? ? C B SER 180 ? ? 57.07 110.10 -53.03 1.90 N 35 1 N B SER 180 ? ? CA B SER 180 ? ? CB B SER 180 ? ? 140.70 110.50 30.20 1.50 N 36 1 CA B SER 180 ? ? CB B SER 180 ? ? OG B SER 180 ? ? 129.20 111.20 18.00 2.70 N 37 1 CA B THR 183 ? ? CB B THR 183 ? ? CG2 B THR 183 ? ? 92.38 112.40 -20.02 1.40 N 38 1 CB B LEU 186 ? ? CG B LEU 186 ? ? CD2 B LEU 186 ? ? 96.14 111.00 -14.86 1.70 N 39 1 CB B ILE 188 ? ? CA B ILE 188 ? ? C B ILE 188 ? ? 132.03 111.60 20.43 2.00 N 40 1 N B ILE 188 ? ? CA B ILE 188 ? ? CB B ILE 188 ? ? 92.55 110.80 -18.25 2.30 N 41 1 CA B ILE 188 ? ? CB B ILE 188 ? ? CG2 B ILE 188 ? ? 142.68 110.90 31.78 2.00 N 42 1 O B CYS 201 ? ? C B CYS 201 ? ? N B ALA 202 ? ? 107.94 122.70 -14.76 1.60 Y 43 1 N B ALA 202 ? ? CA B ALA 202 ? ? CB B ALA 202 ? ? 123.93 110.10 13.83 1.40 N 44 1 N B ARG 203 ? ? CA B ARG 203 ? ? C B ARG 203 ? ? 86.81 111.00 -24.19 2.70 N 45 1 CG B TRP 213 ? ? CD1 B TRP 213 ? ? NE1 B TRP 213 ? ? 101.70 110.10 -8.40 1.00 N 46 1 CD1 B TRP 213 ? ? NE1 B TRP 213 ? ? CE2 B TRP 213 ? ? 118.91 109.00 9.91 0.90 N 47 1 NE1 B TRP 213 ? ? CE2 B TRP 213 ? ? CD2 B TRP 213 ? ? 100.43 107.30 -6.87 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 49 ? ? -121.60 -60.22 2 1 ALA A 53 ? ? 84.32 -45.28 3 1 ARG A 63 ? ? 8.68 -73.69 4 1 ALA A 86 ? ? 147.01 -162.57 5 1 SER A 93 ? ? -141.16 25.24 6 1 PRO B 114 ? ? -84.30 -157.05 7 1 GLU B 115 ? ? 120.73 -168.71 8 1 GLU B 121 ? ? -54.12 -175.24 9 1 ALA B 197 ? ? 169.53 172.51 10 1 ALA B 202 ? ? 173.11 132.89 11 1 TYR B 206 ? ? 60.91 -116.91 12 1 ARG B 207 ? ? -151.34 67.58 13 1 SER B 208 ? ? -174.27 -20.94 14 1 PHE B 212 ? ? 48.45 -166.78 15 1 TRP B 213 ? ? 165.72 6.83 16 1 THR B 217 ? ? 162.51 101.98 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA A 62 ? ? ARG A 63 ? ? 139.85 2 1 GLU B 121 ? ? THR B 122 ? ? 148.71 3 1 GLY B 131 ? ? TYR B 132 ? ? -149.11 4 1 THR B 164 ? ? TYR B 165 ? ? -149.22 5 1 ALA B 202 ? ? ARG B 203 ? ? -149.22 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ARG A 63 ? ? 10.13 2 1 HIS A 78 ? ? 11.37 3 1 GLU B 121 ? ? -14.49 4 1 CYS B 201 ? ? -17.25 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 HIS A 78 ? ? 0.200 'SIDE CHAIN' 2 1 PHE B 169 ? ? 0.102 'SIDE CHAIN' 3 1 PHE B 173 ? ? 0.102 'SIDE CHAIN' 4 1 TYR B 185 ? ? 0.106 'SIDE CHAIN' 5 1 PHE B 210 ? ? 0.132 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? A ARG 63 ? 'WRONG HAND' . 2 1 CA ? B PHE 212 ? 'WRONG HAND' . # _em_ctf_correction.id 1 _em_ctf_correction.details robem _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 34.52 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EM3DR ? RECONSTRUCTION ? 1 2 EMPFT ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details '10mM Tris-HCL' # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9685 _em_virus_natural_host.organism 'Felis catus' _em_virus_natural_host.strain ? # _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.diameter ? _em_virus_shell.triangulation 1 #