data_3IY7 # _entry.id 3IY7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IY7 RCSB RCSB160013 WWPDB D_1000160013 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5112 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details ;the cryoEM reconstruction of the virus-Fab F complex ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IY7 _pdbx_database_status.recvd_initial_deposition_date 2009-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hafenstein, S.' 1 'Bowman, V.D.' 2 'Sun, T.' 3 'Nelson, C.D.' 4 'Palermo, L.M.' 5 'Chipman, P.R.' 6 'Battisti, A.J.' 7 'Parrish, C.R.' 8 'Rossmann, M.G.' 9 # _citation.id primary _citation.title 'Structural comparison of different antibodies interacting with parvovirus capsids' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 5556 _citation.page_last 5566 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321620 _citation.pdbx_database_id_DOI 10.1128/JVI.02532-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hafenstein, S.' 1 primary 'Bowman, V.D.' 2 primary 'Sun, T.' 3 primary 'Nelson, C.D.' 4 primary 'Palermo, L.M.' 5 primary 'Chipman, P.R.' 6 primary 'Battisti, A.J.' 7 primary 'Parrish, C.R.' 8 primary 'Rossmann, M.G.' 9 # _cell.entry_id 3IY7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IY7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'fragment from neutralizing antibody F (light chain)' 11685.065 1 ? ? 'FAb F' ? 2 polymer nat 'fragment from neutralizing antibody F (heavy chain)' 12725.310 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LMTQIPSLLSASVGDRVTLNCKASHNINKNLEWYQQKLGEAPKLLIYYANNLQTGISSRFSGSGSGTDYTLTISSLQPED VATYYCYQYNSGHTFGAGTKLELKRA ; ;LMTQIPSLLSASVGDRVTLNCKASHNINKNLEWYQQKLGEAPKLLIYYANNLQTGISSRFSGSGSGTDYTLTISSLQPED VATYYCYQYNSGHTFGAGTKLELKRA ; A ? 2 'polypeptide(L)' no no ;SGPGLVQPSQTLSLTCTVSGFSLTSYGVSWVRQPPGKGLEWIGTMWNDGDTDYHSALRSRLSISRDSSKSQVLLKMNSLQ TEDTAMYFCARSQLPGYNLRGWFVYWGQGTLVIVS ; ;SGPGLVQPSQTLSLTCTVSGFSLTSYGVSWVRQPPGKGLEWIGTMWNDGDTDYHSALRSRLSISRDSSKSQVLLKMNSLQ TEDTAMYFCARSQLPGYNLRGWFVYWGQGTLVIVS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 THR n 1 4 GLN n 1 5 ILE n 1 6 PRO n 1 7 SER n 1 8 LEU n 1 9 LEU n 1 10 SER n 1 11 ALA n 1 12 SER n 1 13 VAL n 1 14 GLY n 1 15 ASP n 1 16 ARG n 1 17 VAL n 1 18 THR n 1 19 LEU n 1 20 ASN n 1 21 CYS n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 HIS n 1 26 ASN n 1 27 ILE n 1 28 ASN n 1 29 LYS n 1 30 ASN n 1 31 LEU n 1 32 GLU n 1 33 TRP n 1 34 TYR n 1 35 GLN n 1 36 GLN n 1 37 LYS n 1 38 LEU n 1 39 GLY n 1 40 GLU n 1 41 ALA n 1 42 PRO n 1 43 LYS n 1 44 LEU n 1 45 LEU n 1 46 ILE n 1 47 TYR n 1 48 TYR n 1 49 ALA n 1 50 ASN n 1 51 ASN n 1 52 LEU n 1 53 GLN n 1 54 THR n 1 55 GLY n 1 56 ILE n 1 57 SER n 1 58 SER n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 THR n 1 68 ASP n 1 69 TYR n 1 70 THR n 1 71 LEU n 1 72 THR n 1 73 ILE n 1 74 SER n 1 75 SER n 1 76 LEU n 1 77 GLN n 1 78 PRO n 1 79 GLU n 1 80 ASP n 1 81 VAL n 1 82 ALA n 1 83 THR n 1 84 TYR n 1 85 TYR n 1 86 CYS n 1 87 TYR n 1 88 GLN n 1 89 TYR n 1 90 ASN n 1 91 SER n 1 92 GLY n 1 93 HIS n 1 94 THR n 1 95 PHE n 1 96 GLY n 1 97 ALA n 1 98 GLY n 1 99 THR n 1 100 LYS n 1 101 LEU n 1 102 GLU n 1 103 LEU n 1 104 LYS n 1 105 ARG n 1 106 ALA n 2 1 SER n 2 2 GLY n 2 3 PRO n 2 4 GLY n 2 5 LEU n 2 6 VAL n 2 7 GLN n 2 8 PRO n 2 9 SER n 2 10 GLN n 2 11 THR n 2 12 LEU n 2 13 SER n 2 14 LEU n 2 15 THR n 2 16 CYS n 2 17 THR n 2 18 VAL n 2 19 SER n 2 20 GLY n 2 21 PHE n 2 22 SER n 2 23 LEU n 2 24 THR n 2 25 SER n 2 26 TYR n 2 27 GLY n 2 28 VAL n 2 29 SER n 2 30 TRP n 2 31 VAL n 2 32 ARG n 2 33 GLN n 2 34 PRO n 2 35 PRO n 2 36 GLY n 2 37 LYS n 2 38 GLY n 2 39 LEU n 2 40 GLU n 2 41 TRP n 2 42 ILE n 2 43 GLY n 2 44 THR n 2 45 MET n 2 46 TRP n 2 47 ASN n 2 48 ASP n 2 49 GLY n 2 50 ASP n 2 51 THR n 2 52 ASP n 2 53 TYR n 2 54 HIS n 2 55 SER n 2 56 ALA n 2 57 LEU n 2 58 ARG n 2 59 SER n 2 60 ARG n 2 61 LEU n 2 62 SER n 2 63 ILE n 2 64 SER n 2 65 ARG n 2 66 ASP n 2 67 SER n 2 68 SER n 2 69 LYS n 2 70 SER n 2 71 GLN n 2 72 VAL n 2 73 LEU n 2 74 LEU n 2 75 LYS n 2 76 MET n 2 77 ASN n 2 78 SER n 2 79 LEU n 2 80 GLN n 2 81 THR n 2 82 GLU n 2 83 ASP n 2 84 THR n 2 85 ALA n 2 86 MET n 2 87 TYR n 2 88 PHE n 2 89 CYS n 2 90 ALA n 2 91 ARG n 2 92 SER n 2 93 GLN n 2 94 LEU n 2 95 PRO n 2 96 GLY n 2 97 TYR n 2 98 ASN n 2 99 LEU n 2 100 ARG n 2 101 GLY n 2 102 TRP n 2 103 PHE n 2 104 VAL n 2 105 TYR n 2 106 TRP n 2 107 GLY n 2 108 GLN n 2 109 GLY n 2 110 THR n 2 111 LEU n 2 112 VAL n 2 113 ILE n 2 114 VAL n 2 115 SER n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3IY7 3IY7 1 1 ;LMTQIPSLLSASVGDRVTLNCKASHNINKNLEWYQQKLGEAPKLLIYYANNLQTGISSRFSGSGSGTDYTLTISSLQPED VATYYCYQYNSGHTFGAGTKLELKRA ; ? 2 PDB 3IY7 3IY7 2 1 ;SGPGLVQPSQTLSLTCTVSGFSLTSYGVSWVRQPPGKGLEWIGTMWNDGDTDYHSALRSRLSISRDSSKSQVLLKMNSLQ TEDTAMYFCARSQLPGYNLRGWFVYWGQGTLVIVS ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IY7 A 1 ? 106 ? 3IY7 1 ? 106 ? 1 106 2 2 3IY7 B 1 ? 115 ? 3IY7 107 ? 221 ? 107 221 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IY7 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1717 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1717 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3IY7 _struct.title 'Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex' _struct.pdbx_descriptor 'fragment from neutralizing antibody F (light chain), fragment from neutralizing antibody F (heavy chain)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IY7 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'cryoEM, neutralizing antibody, parvovirus, canine, feline, fab footprint, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 77 ? VAL A 81 ? GLN A 77 VAL A 81 5 ? 5 HELX_P HELX_P2 2 SER B 55 ? ARG B 58 ? SER B 161 ARG B 164 5 ? 4 HELX_P HELX_P3 3 GLN B 80 ? THR B 84 ? GLN B 186 THR B 190 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 21 A CYS 86 1_555 ? ? ? ? ? ? ? 2.499 ? disulf2 disulf ? ? B CYS 16 SG ? ? ? 1_555 B CYS 89 SG ? ? B CYS 122 B CYS 195 1_555 ? ? ? ? ? ? ? 2.532 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 5 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 5 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 6 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 6 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.78 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 6 ? E ? 4 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? ILE A 5 ? MET A 2 ILE A 5 A 2 VAL A 17 ? ALA A 23 ? VAL A 17 ALA A 23 A 3 ASP A 68 ? ILE A 73 ? ASP A 68 ILE A 73 A 4 PHE A 60 ? SER A 65 ? PHE A 60 SER A 65 B 1 LEU A 8 ? SER A 12 ? LEU A 8 SER A 12 B 2 THR A 99 ? LYS A 104 ? THR A 99 LYS A 104 B 3 ALA A 82 ? GLN A 88 ? ALA A 82 GLN A 88 B 4 LEU A 31 ? GLN A 36 ? LEU A 31 GLN A 36 B 5 LYS A 43 ? TYR A 47 ? LYS A 43 TYR A 47 B 6 ASN A 51 ? LEU A 52 ? ASN A 51 LEU A 52 C 1 LEU A 8 ? SER A 12 ? LEU A 8 SER A 12 C 2 THR A 99 ? LYS A 104 ? THR A 99 LYS A 104 C 3 ALA A 82 ? GLN A 88 ? ALA A 82 GLN A 88 C 4 THR A 94 ? PHE A 95 ? THR A 94 PHE A 95 D 1 GLY B 4 ? VAL B 6 ? GLY B 110 VAL B 112 D 2 LEU B 111 ? VAL B 114 ? LEU B 217 VAL B 220 D 3 ALA B 85 ? GLN B 93 ? ALA B 191 GLN B 199 D 4 VAL B 28 ? GLN B 33 ? VAL B 134 GLN B 139 D 5 GLU B 40 ? MET B 45 ? GLU B 146 MET B 151 D 6 THR B 51 ? TYR B 53 ? THR B 157 TYR B 159 E 1 GLY B 4 ? VAL B 6 ? GLY B 110 VAL B 112 E 2 LEU B 111 ? VAL B 114 ? LEU B 217 VAL B 220 E 3 ALA B 85 ? GLN B 93 ? ALA B 191 GLN B 199 E 4 TRP B 102 ? TYR B 105 ? TRP B 208 TYR B 211 F 1 LEU B 12 ? THR B 17 ? LEU B 118 THR B 123 F 2 GLN B 71 ? MET B 76 ? GLN B 177 MET B 182 F 3 LEU B 61 ? ASP B 66 ? LEU B 167 ASP B 172 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 5 O ASN A 20 ? O ASN A 20 A 2 3 N LEU A 19 ? N LEU A 19 O LEU A 71 ? O LEU A 71 A 3 4 O THR A 70 ? O THR A 70 N SER A 63 ? N SER A 63 B 1 2 N ALA A 11 ? N ALA A 11 O LYS A 104 ? O LYS A 104 B 2 3 O LEU A 101 ? O LEU A 101 N ALA A 82 ? N ALA A 82 B 3 4 O TYR A 87 ? O TYR A 87 N GLU A 32 ? N GLU A 32 B 4 5 N TRP A 33 ? N TRP A 33 O ILE A 46 ? O ILE A 46 B 5 6 N TYR A 47 ? N TYR A 47 O ASN A 51 ? O ASN A 51 C 1 2 N ALA A 11 ? N ALA A 11 O LYS A 104 ? O LYS A 104 C 2 3 O LEU A 101 ? O LEU A 101 N ALA A 82 ? N ALA A 82 C 3 4 N GLN A 88 ? N GLN A 88 O THR A 94 ? O THR A 94 D 1 2 N VAL B 6 ? N VAL B 112 O ILE B 113 ? O ILE B 219 D 2 3 O VAL B 112 ? O VAL B 218 N ALA B 85 ? N ALA B 191 D 3 4 O MET B 86 ? O MET B 192 N GLN B 33 ? N GLN B 139 D 4 5 N ARG B 32 ? N ARG B 138 O GLU B 40 ? O GLU B 146 D 5 6 N THR B 44 ? N THR B 150 O ASP B 52 ? O ASP B 158 E 1 2 N VAL B 6 ? N VAL B 112 O ILE B 113 ? O ILE B 219 E 2 3 O VAL B 112 ? O VAL B 218 N ALA B 85 ? N ALA B 191 E 3 4 N ARG B 91 ? N ARG B 197 O VAL B 104 ? O VAL B 210 F 1 2 N LEU B 14 ? N LEU B 120 O LEU B 74 ? O LEU B 180 F 2 3 O LEU B 73 ? O LEU B 179 N SER B 64 ? N SER B 170 # _database_PDB_matrix.entry_id 3IY7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IY7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n B 2 1 SER 1 107 107 SER SER B . n B 2 2 GLY 2 108 108 GLY GLY B . n B 2 3 PRO 3 109 109 PRO PRO B . n B 2 4 GLY 4 110 110 GLY GLY B . n B 2 5 LEU 5 111 111 LEU LEU B . n B 2 6 VAL 6 112 112 VAL VAL B . n B 2 7 GLN 7 113 113 GLN GLN B . n B 2 8 PRO 8 114 114 PRO PRO B . n B 2 9 SER 9 115 115 SER SER B . n B 2 10 GLN 10 116 116 GLN GLN B . n B 2 11 THR 11 117 117 THR THR B . n B 2 12 LEU 12 118 118 LEU LEU B . n B 2 13 SER 13 119 119 SER SER B . n B 2 14 LEU 14 120 120 LEU LEU B . n B 2 15 THR 15 121 121 THR THR B . n B 2 16 CYS 16 122 122 CYS CYS B . n B 2 17 THR 17 123 123 THR THR B . n B 2 18 VAL 18 124 124 VAL VAL B . n B 2 19 SER 19 125 125 SER SER B . n B 2 20 GLY 20 126 126 GLY GLY B . n B 2 21 PHE 21 127 127 PHE PHE B . n B 2 22 SER 22 128 128 SER SER B . n B 2 23 LEU 23 129 129 LEU LEU B . n B 2 24 THR 24 130 130 THR THR B . n B 2 25 SER 25 131 131 SER SER B . n B 2 26 TYR 26 132 132 TYR TYR B . n B 2 27 GLY 27 133 133 GLY GLY B . n B 2 28 VAL 28 134 134 VAL VAL B . n B 2 29 SER 29 135 135 SER SER B . n B 2 30 TRP 30 136 136 TRP TRP B . n B 2 31 VAL 31 137 137 VAL VAL B . n B 2 32 ARG 32 138 138 ARG ARG B . n B 2 33 GLN 33 139 139 GLN GLN B . n B 2 34 PRO 34 140 140 PRO PRO B . n B 2 35 PRO 35 141 141 PRO PRO B . n B 2 36 GLY 36 142 142 GLY GLY B . n B 2 37 LYS 37 143 143 LYS LYS B . n B 2 38 GLY 38 144 144 GLY GLY B . n B 2 39 LEU 39 145 145 LEU LEU B . n B 2 40 GLU 40 146 146 GLU GLU B . n B 2 41 TRP 41 147 147 TRP TRP B . n B 2 42 ILE 42 148 148 ILE ILE B . n B 2 43 GLY 43 149 149 GLY GLY B . n B 2 44 THR 44 150 150 THR THR B . n B 2 45 MET 45 151 151 MET MET B . n B 2 46 TRP 46 152 152 TRP TRP B . n B 2 47 ASN 47 153 153 ASN ASN B . n B 2 48 ASP 48 154 154 ASP ASP B . n B 2 49 GLY 49 155 155 GLY GLY B . n B 2 50 ASP 50 156 156 ASP ASP B . n B 2 51 THR 51 157 157 THR THR B . n B 2 52 ASP 52 158 158 ASP ASP B . n B 2 53 TYR 53 159 159 TYR TYR B . n B 2 54 HIS 54 160 160 HIS HIS B . n B 2 55 SER 55 161 161 SER SER B . n B 2 56 ALA 56 162 162 ALA ALA B . n B 2 57 LEU 57 163 163 LEU LEU B . n B 2 58 ARG 58 164 164 ARG ARG B . n B 2 59 SER 59 165 165 SER SER B . n B 2 60 ARG 60 166 166 ARG ARG B . n B 2 61 LEU 61 167 167 LEU LEU B . n B 2 62 SER 62 168 168 SER SER B . n B 2 63 ILE 63 169 169 ILE ILE B . n B 2 64 SER 64 170 170 SER SER B . n B 2 65 ARG 65 171 171 ARG ARG B . n B 2 66 ASP 66 172 172 ASP ASP B . n B 2 67 SER 67 173 173 SER SER B . n B 2 68 SER 68 174 174 SER SER B . n B 2 69 LYS 69 175 175 LYS LYS B . n B 2 70 SER 70 176 176 SER SER B . n B 2 71 GLN 71 177 177 GLN GLN B . n B 2 72 VAL 72 178 178 VAL VAL B . n B 2 73 LEU 73 179 179 LEU LEU B . n B 2 74 LEU 74 180 180 LEU LEU B . n B 2 75 LYS 75 181 181 LYS LYS B . n B 2 76 MET 76 182 182 MET MET B . n B 2 77 ASN 77 183 183 ASN ASN B . n B 2 78 SER 78 184 184 SER SER B . n B 2 79 LEU 79 185 185 LEU LEU B . n B 2 80 GLN 80 186 186 GLN GLN B . n B 2 81 THR 81 187 187 THR THR B . n B 2 82 GLU 82 188 188 GLU GLU B . n B 2 83 ASP 83 189 189 ASP ASP B . n B 2 84 THR 84 190 190 THR THR B . n B 2 85 ALA 85 191 191 ALA ALA B . n B 2 86 MET 86 192 192 MET MET B . n B 2 87 TYR 87 193 193 TYR TYR B . n B 2 88 PHE 88 194 194 PHE PHE B . n B 2 89 CYS 89 195 195 CYS CYS B . n B 2 90 ALA 90 196 196 ALA ALA B . n B 2 91 ARG 91 197 197 ARG ARG B . n B 2 92 SER 92 198 198 SER SER B . n B 2 93 GLN 93 199 199 GLN GLN B . n B 2 94 LEU 94 200 200 LEU LEU B . n B 2 95 PRO 95 201 201 PRO PRO B . n B 2 96 GLY 96 202 202 GLY GLY B . n B 2 97 TYR 97 203 203 TYR TYR B . n B 2 98 ASN 98 204 204 ASN ASN B . n B 2 99 LEU 99 205 205 LEU LEU B . n B 2 100 ARG 100 206 206 ARG ARG B . n B 2 101 GLY 101 207 207 GLY GLY B . n B 2 102 TRP 102 208 208 TRP TRP B . n B 2 103 PHE 103 209 209 PHE PHE B . n B 2 104 VAL 104 210 210 VAL VAL B . n B 2 105 TYR 105 211 211 TYR TYR B . n B 2 106 TRP 106 212 212 TRP TRP B . n B 2 107 GLY 107 213 213 GLY GLY B . n B 2 108 GLN 108 214 214 GLN GLN B . n B 2 109 GLY 109 215 215 GLY GLY B . n B 2 110 THR 110 216 216 THR THR B . n B 2 111 LEU 111 217 217 LEU LEU B . n B 2 112 VAL 112 218 218 VAL VAL B . n B 2 113 ILE 113 219 219 ILE ILE B . n B 2 114 VAL 114 220 220 VAL VAL B . n B 2 115 SER 115 221 221 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_software.image_processing_id' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3IY7 _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 3IY7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'common lines' _em_3d_reconstruction.resolution 14 _em_3d_reconstruction.num_particles 1769 _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.5 _em_buffer.details '10mM Tris-HCL' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Fab fragment from MAb F interacting with feline panleukopenia virus (FPV)' COMPLEX 0 ? ? ? 2 'feline panleukopenia virus' VIRUS 1 FPV ? ? # _em_image_scans.entry_id 3IY7 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 93 _em_image_scans.scanner_model 'ZEISS SCAI' _em_image_scans.sampling_size 7 _em_image_scans.od_range 0.9 _em_image_scans.quant_bit_size ? _em_image_scans.details 'scanned at 7 microns and bin averaged to 14' _em_image_scans.citation_id ? # _em_imaging.entry_id 3IY7 _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM300FEG/T' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'TUNGSTEN HAIRPIN' _em_imaging.specimen_id 1 _em_imaging.specimen_holder_type 'side mounted nitrogen cooled' _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.accelerating_voltage 300 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_defocus_min 1.0 _em_imaging.nominal_defocus_max 7.3 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification 47190 _em_imaging.temperature 93 _em_imaging.recording_temperature_minimum 83 _em_imaging.recording_temperature_maximum 83 _em_imaging.detector_distance 0.0 _em_imaging.date 2004-09-15 _em_imaging.electron_beam_tilt_params ? _em_imaging.astigmatism 'objective lens astigmatism was corrected at 100,000 times magnification' _em_imaging.details ? _em_imaging.nominal_cs ? _em_imaging.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty YES _em_virus_entity.enveloped NO _em_virus_entity.details ? # _em_vitrification.entry_id 3IY7 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp 120 _em_vitrification.method 'blotted before plunging' _em_vitrification.time_resolved_state ? _em_vitrification.details ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 3IY7 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3IY7 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N B VAL 112 ? ? CA B VAL 112 ? ? 1.306 1.459 -0.153 0.020 N 2 1 CD B GLN 116 ? ? NE2 B GLN 116 ? ? 1.119 1.324 -0.205 0.025 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 17 ? ? CB A VAL 17 ? ? CG2 A VAL 17 ? ? 97.24 110.90 -13.66 1.50 N 2 1 N A LEU 19 ? ? CA A LEU 19 ? ? CB A LEU 19 ? ? 128.36 110.40 17.96 2.00 N 3 1 ND1 A HIS 25 ? ? CE1 A HIS 25 ? ? NE2 A HIS 25 ? ? 120.22 111.50 8.72 1.30 N 4 1 CG1 A ILE 27 ? ? CB A ILE 27 ? ? CG2 A ILE 27 ? ? 125.49 111.40 14.09 2.20 N 5 1 CB A GLU 32 ? ? CA A GLU 32 ? ? C A GLU 32 ? ? 95.00 110.40 -15.40 2.00 N 6 1 CB A TYR 48 ? ? CA A TYR 48 ? ? C A TYR 48 ? ? 124.24 110.40 13.84 2.00 N 7 1 N A TYR 48 ? ? CA A TYR 48 ? ? CB A TYR 48 ? ? 121.47 110.60 10.87 1.80 N 8 1 ND1 A HIS 93 ? ? CE1 A HIS 93 ? ? NE2 A HIS 93 ? ? 120.09 111.50 8.59 1.30 N 9 1 N A LEU 103 ? ? CA A LEU 103 ? ? CB A LEU 103 ? ? 95.06 110.40 -15.34 2.00 N 10 1 CA A LEU 103 ? ? CB A LEU 103 ? ? CG A LEU 103 ? ? 98.79 115.30 -16.51 2.30 N 11 1 CG1 B VAL 112 ? ? CB B VAL 112 ? ? CG2 B VAL 112 ? ? 92.73 110.90 -18.17 1.60 N 12 1 CA B VAL 112 ? ? CB B VAL 112 ? ? CG1 B VAL 112 ? ? 126.97 110.90 16.07 1.50 N 13 1 N B VAL 112 ? ? CA B VAL 112 ? ? C B VAL 112 ? ? 129.04 111.00 18.04 2.70 N 14 1 CA B VAL 112 ? ? C B VAL 112 ? ? O B VAL 112 ? ? 103.99 120.10 -16.11 2.10 N 15 1 CA B VAL 112 ? ? C B VAL 112 ? ? N B GLN 113 ? ? 133.91 117.20 16.71 2.20 Y 16 1 N B GLN 116 ? ? CA B GLN 116 ? ? CB B GLN 116 ? ? 121.51 110.60 10.91 1.80 N 17 1 OE1 B GLN 116 ? ? CD B GLN 116 ? ? NE2 B GLN 116 ? ? 106.49 121.90 -15.41 2.30 N 18 1 CB B CYS 122 ? ? CA B CYS 122 ? ? C B CYS 122 ? ? 123.49 111.50 11.99 1.20 N 19 1 CA B VAL 124 ? ? CB B VAL 124 ? ? CG1 B VAL 124 ? ? 120.44 110.90 9.54 1.50 N 20 1 CA B PRO 140 ? ? N B PRO 140 ? ? CD B PRO 140 ? ? 99.82 111.70 -11.88 1.40 N 21 1 O B GLY 144 ? ? C B GLY 144 ? ? N B LEU 145 ? ? 106.59 122.70 -16.11 1.60 Y 22 1 CG1 B ILE 148 ? ? CB B ILE 148 ? ? CG2 B ILE 148 ? ? 97.85 111.40 -13.55 2.20 N 23 1 CB B MET 151 ? ? CA B MET 151 ? ? C B MET 151 ? ? 95.81 110.40 -14.59 2.00 N 24 1 CB B ALA 162 ? ? CA B ALA 162 ? ? C B ALA 162 ? ? 98.41 110.10 -11.69 1.50 N 25 1 N B ALA 162 ? ? CA B ALA 162 ? ? CB B ALA 162 ? ? 127.54 110.10 17.44 1.40 N 26 1 CG1 B VAL 178 ? ? CB B VAL 178 ? ? CG2 B VAL 178 ? ? 97.60 110.90 -13.30 1.60 N 27 1 CD1 B TRP 208 ? ? NE1 B TRP 208 ? ? CE2 B TRP 208 ? ? 103.48 109.00 -5.52 0.90 N 28 1 CA B VAL 210 ? ? CB B VAL 210 ? ? CG2 B VAL 210 ? ? 122.50 110.90 11.60 1.50 N 29 1 CB B TYR 211 ? ? CA B TYR 211 ? ? C B TYR 211 ? ? 95.35 110.40 -15.05 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 28 ? ? 51.92 -108.18 2 1 LEU A 45 ? ? -121.60 -60.26 3 1 TYR A 48 ? ? 36.15 61.66 4 1 ALA A 49 ? ? 86.40 -56.76 5 1 ASN A 50 ? ? -159.94 43.31 6 1 LEU A 52 ? ? -24.78 116.99 7 1 SER A 58 ? ? -69.17 5.12 8 1 ALA A 82 ? ? 147.42 -162.45 9 1 HIS A 93 ? ? 89.88 59.16 10 1 PRO B 109 ? ? -85.67 -157.82 11 1 SER B 115 ? ? 106.73 -13.60 12 1 GLN B 116 ? ? -69.51 -177.10 13 1 SER B 165 ? ? 85.65 -9.95 14 1 ALA B 191 ? ? 169.70 172.69 15 1 LEU B 200 ? ? -151.39 -44.22 16 1 PRO B 201 ? ? 20.93 62.16 17 1 TYR B 203 ? ? 98.59 4.94 18 1 LEU B 205 ? ? -33.52 135.89 19 1 TRP B 212 ? ? 173.59 4.31 20 1 THR B 216 ? ? 162.61 102.07 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 125 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 126 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -83.93 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 SER B 125 ? ? -12.30 2 1 GLY B 144 ? ? 17.28 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 GLN B 116 ? ? 0.113 'SIDE CHAIN' 2 1 HIS B 160 ? ? 0.134 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id LEU _pdbx_validate_chiral.auth_seq_id 19 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _em_ctf_correction.id 1 _em_ctf_correction.details robem _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 26.3 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 EM3DR ? RECONSTRUCTION ? 1 2 EMPFT ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details '10mM Tris-HCL' # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9685 _em_virus_natural_host.organism 'Felis catus' _em_virus_natural_host.strain ? # _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.diameter ? _em_virus_shell.triangulation 1 #