data_3J0D # _entry.id 3J0D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J0D pdb_00003j0d 10.2210/pdb3j0d/pdb RCSB RCSB160091 ? ? WWPDB D_1000160091 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2013-11-13 3 'Structure model' 1 2 2014-07-23 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_image_scans 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' em_3d_fitting_list 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_em_3d_fitting_list.accession_code' 5 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 5 'Structure model' '_em_3d_fitting_list.source_name' 7 5 'Structure model' '_em_3d_fitting_list.type' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'RESIDUE J ILE 103 CHIRAL CENTER CB IS PLANAR.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J0D _pdbx_database_status.recvd_initial_deposition_date 2011-06-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-1915 'associated EM volume' 'E.Coli 70S PoTC with bound T.Thermophilus Ribosome Recycling Factor' EMDB EMD-1916 'other EM volume' 'T.Thermophilus Ribosome Recycling Factor' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yokoyama, T.' 1 'Shaikh, T.R.' 2 'Iwakura, N.' 3 'Kaji, H.' 4 'Kaji, A.' 5 'Agrawal, R.K.' 6 # _citation.id primary _citation.title 'Structural insights into initial and intermediate steps of the ribosome-recycling process.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 31 _citation.page_first 1836 _citation.page_last 1846 _citation.year 2012 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22388519 _citation.pdbx_database_id_DOI 10.1038/emboj.2012.22 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yokoyama, T.' 1 ? primary 'Shaikh, T.R.' 2 ? primary 'Iwakura, N.' 3 ? primary 'Kaji, H.' 4 ? primary 'Kaji, A.' 5 ? primary 'Agrawal, R.K.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'ribosomal 23S RNA' 16114.632 1 ? ? 'helices 43 and 44' ? 2 polymer nat 'ribosomal 23S RNA' 6994.202 1 ? ? 'helix 69' ? 3 polymer nat 'ribosomal 23S RNA' 5459.285 1 ? ? 'helix 71' ? 4 polymer nat 'ribosomal 23S RNA' 4228.565 1 ? ? 'helix 80' ? 5 polymer nat 'ribosomal 23S RNA' 6117.697 1 ? ? 'helix 93' ? 6 polymer nat 'ribosomal 23S RNA' 6155.753 1 ? ? 'helix 95' ? 7 polymer nat '50S ribosomal protein L11' 14763.165 1 ? ? ? ? 8 polymer nat 'ribosomal 16S RNA' 5787.508 1 ? ? 'helix 44 strand 1' ? 9 polymer nat 'ribosomal 16S RNA' 6173.722 1 ? ? 'helix 44 strand 2' ? 10 polymer nat '30S ribosomal protein S12' 13636.961 1 ? ? ? ? 11 polymer nat 'Ribosome-recycling factor' 21029.068 1 ? ? ? ? # _entity_name_com.entity_id 11 _entity_name_com.name 'RRF, Ribosome-releasing factor' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC A ? 2 polyribonucleotide no no CGGCCGUAACUAUAACGGUCCU CGGCCGUAACUAUAACGGUCCU B ? 3 polyribonucleotide no no GUCGGGUAAGUUCCGAC GUCGGGUAAGUUCCGAC C ? 4 polyribonucleotide no no GACUGGGGCGGUC GACUGGGGCGGUC D ? 5 polyribonucleotide no no GAACGUCGUGAGACAGUUC GAACGUCGUGAGACAGUUC E ? 6 polyribonucleotide no no CCUAGUACGAGAGGACCGG CCUAGUACGAGAGGACCGG F ? 7 'polypeptide(L)' no no ;AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED ; ;AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED ; G ? 8 polyribonucleotide no no CGUCACACCAUGGGAGUG CGUCACACCAUGGGAGUG H ? 9 polyribonucleotide no no CAUGACUGGGGUGAAGUCG CAUGACUGGGGUGAAGUCG h ? 10 'polypeptide(L)' no no ;ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA ; ;ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA ; I ? 11 'polypeptide(L)' no no ;MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE IQKITDEFIAKADQLAEKKEQEILG ; ;MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE IQKITDEFIAKADQLAEKKEQEILG ; J ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 U n 1 8 G n 1 9 G n 1 10 C n 1 11 U n 1 12 U n 1 13 A n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 C n 1 19 A n 1 20 G n 1 21 C n 1 22 C n 1 23 A n 1 24 U n 1 25 C n 1 26 A n 1 27 U n 1 28 U n 1 29 U n 1 30 A n 1 31 A n 1 32 A n 1 33 G n 1 34 A n 1 35 A n 1 36 A n 1 37 G n 1 38 C n 1 39 G n 1 40 U n 1 41 A n 1 42 A n 1 43 U n 1 44 A n 1 45 G n 1 46 C n 1 47 U n 1 48 C n 1 49 A n 1 50 C n 2 1 C n 2 2 G n 2 3 G n 2 4 C n 2 5 C n 2 6 G n 2 7 U n 2 8 A n 2 9 A n 2 10 C n 2 11 U n 2 12 A n 2 13 U n 2 14 A n 2 15 A n 2 16 C n 2 17 G n 2 18 G n 2 19 U n 2 20 C n 2 21 C n 2 22 U n 3 1 G n 3 2 U n 3 3 C n 3 4 G n 3 5 G n 3 6 G n 3 7 U n 3 8 A n 3 9 A n 3 10 G n 3 11 U n 3 12 U n 3 13 C n 3 14 C n 3 15 G n 3 16 A n 3 17 C n 4 1 G n 4 2 A n 4 3 C n 4 4 U n 4 5 G n 4 6 G n 4 7 G n 4 8 G n 4 9 C n 4 10 G n 4 11 G n 4 12 U n 4 13 C n 5 1 G n 5 2 A n 5 3 A n 5 4 C n 5 5 G n 5 6 U n 5 7 C n 5 8 G n 5 9 U n 5 10 G n 5 11 A n 5 12 G n 5 13 A n 5 14 C n 5 15 A n 5 16 G n 5 17 U n 5 18 U n 5 19 C n 6 1 C n 6 2 C n 6 3 U n 6 4 A n 6 5 G n 6 6 U n 6 7 A n 6 8 C n 6 9 G n 6 10 A n 6 11 G n 6 12 A n 6 13 G n 6 14 G n 6 15 A n 6 16 C n 6 17 C n 6 18 G n 6 19 G n 7 1 ALA n 7 2 LYS n 7 3 LYS n 7 4 VAL n 7 5 GLN n 7 6 ALA n 7 7 TYR n 7 8 VAL n 7 9 LYS n 7 10 LEU n 7 11 GLN n 7 12 VAL n 7 13 ALA n 7 14 ALA n 7 15 GLY n 7 16 MET n 7 17 ALA n 7 18 ASN n 7 19 PRO n 7 20 SER n 7 21 PRO n 7 22 PRO n 7 23 VAL n 7 24 GLY n 7 25 PRO n 7 26 ALA n 7 27 LEU n 7 28 GLY n 7 29 GLN n 7 30 GLN n 7 31 GLY n 7 32 VAL n 7 33 ASN n 7 34 ILE n 7 35 MET n 7 36 GLU n 7 37 PHE n 7 38 CYS n 7 39 LYS n 7 40 ALA n 7 41 PHE n 7 42 ASN n 7 43 ALA n 7 44 LYS n 7 45 THR n 7 46 ASP n 7 47 SER n 7 48 ILE n 7 49 GLU n 7 50 LYS n 7 51 GLY n 7 52 LEU n 7 53 PRO n 7 54 ILE n 7 55 PRO n 7 56 VAL n 7 57 VAL n 7 58 ILE n 7 59 THR n 7 60 VAL n 7 61 TYR n 7 62 ALA n 7 63 ASP n 7 64 ARG n 7 65 SER n 7 66 PHE n 7 67 THR n 7 68 PHE n 7 69 VAL n 7 70 THR n 7 71 LYS n 7 72 THR n 7 73 PRO n 7 74 PRO n 7 75 ALA n 7 76 ALA n 7 77 VAL n 7 78 LEU n 7 79 LEU n 7 80 LYS n 7 81 LYS n 7 82 ALA n 7 83 ALA n 7 84 GLY n 7 85 ILE n 7 86 LYS n 7 87 SER n 7 88 GLY n 7 89 SER n 7 90 GLY n 7 91 LYS n 7 92 PRO n 7 93 ASN n 7 94 LYS n 7 95 ASP n 7 96 LYS n 7 97 VAL n 7 98 GLY n 7 99 LYS n 7 100 ILE n 7 101 SER n 7 102 ARG n 7 103 ALA n 7 104 GLN n 7 105 LEU n 7 106 GLN n 7 107 GLU n 7 108 ILE n 7 109 ALA n 7 110 GLN n 7 111 THR n 7 112 LYS n 7 113 ALA n 7 114 ALA n 7 115 ASP n 7 116 MET n 7 117 THR n 7 118 GLY n 7 119 ALA n 7 120 ASP n 7 121 ILE n 7 122 GLU n 7 123 ALA n 7 124 MET n 7 125 THR n 7 126 ARG n 7 127 SER n 7 128 ILE n 7 129 GLU n 7 130 GLY n 7 131 THR n 7 132 ALA n 7 133 ARG n 7 134 SER n 7 135 MET n 7 136 GLY n 7 137 LEU n 7 138 VAL n 7 139 VAL n 7 140 GLU n 7 141 ASP n 8 1 C n 8 2 G n 8 3 U n 8 4 C n 8 5 A n 8 6 C n 8 7 A n 8 8 C n 8 9 C n 8 10 A n 8 11 U n 8 12 G n 8 13 G n 8 14 G n 8 15 A n 8 16 G n 8 17 U n 8 18 G n 9 1 C n 9 2 A n 9 3 U n 9 4 G n 9 5 A n 9 6 C n 9 7 U n 9 8 G n 9 9 G n 9 10 G n 9 11 G n 9 12 U n 9 13 G n 9 14 A n 9 15 A n 9 16 G n 9 17 U n 9 18 C n 9 19 G n 10 1 ALA n 10 2 THR n 10 3 VAL n 10 4 ASN n 10 5 GLN n 10 6 LEU n 10 7 VAL n 10 8 ARG n 10 9 LYS n 10 10 PRO n 10 11 ARG n 10 12 ALA n 10 13 ARG n 10 14 LYS n 10 15 VAL n 10 16 ALA n 10 17 LYS n 10 18 SER n 10 19 ASN n 10 20 VAL n 10 21 PRO n 10 22 ALA n 10 23 LEU n 10 24 GLU n 10 25 ALA n 10 26 CYS n 10 27 PRO n 10 28 GLN n 10 29 LYS n 10 30 ARG n 10 31 GLY n 10 32 VAL n 10 33 CYS n 10 34 THR n 10 35 ARG n 10 36 VAL n 10 37 TYR n 10 38 THR n 10 39 THR n 10 40 THR n 10 41 PRO n 10 42 LYS n 10 43 LYS n 10 44 PRO n 10 45 ASN n 10 46 SER n 10 47 ALA n 10 48 LEU n 10 49 ARG n 10 50 LYS n 10 51 VAL n 10 52 CYS n 10 53 ARG n 10 54 VAL n 10 55 ARG n 10 56 LEU n 10 57 THR n 10 58 ASN n 10 59 GLY n 10 60 PHE n 10 61 GLU n 10 62 VAL n 10 63 THR n 10 64 SER n 10 65 TYR n 10 66 ILE n 10 67 GLY n 10 68 GLY n 10 69 GLU n 10 70 GLY n 10 71 HIS n 10 72 ASN n 10 73 LEU n 10 74 GLN n 10 75 GLU n 10 76 HIS n 10 77 SER n 10 78 VAL n 10 79 ILE n 10 80 LEU n 10 81 ILE n 10 82 ARG n 10 83 GLY n 10 84 GLY n 10 85 ARG n 10 86 VAL n 10 87 LYS n 10 88 ASP n 10 89 LEU n 10 90 PRO n 10 91 GLY n 10 92 VAL n 10 93 ARG n 10 94 TYR n 10 95 HIS n 10 96 THR n 10 97 VAL n 10 98 ARG n 10 99 GLY n 10 100 ALA n 10 101 LEU n 10 102 ASP n 10 103 CYS n 10 104 SER n 10 105 GLY n 10 106 VAL n 10 107 LYS n 10 108 ASP n 10 109 ARG n 10 110 LYS n 10 111 GLN n 10 112 ALA n 10 113 ARG n 10 114 SER n 10 115 LYS n 10 116 TYR n 10 117 GLY n 10 118 VAL n 10 119 LYS n 10 120 ARG n 10 121 PRO n 10 122 LYS n 10 123 ALA n 11 1 MET n 11 2 THR n 11 3 LEU n 11 4 LYS n 11 5 GLU n 11 6 LEU n 11 7 TYR n 11 8 ALA n 11 9 GLU n 11 10 THR n 11 11 ARG n 11 12 SER n 11 13 HIS n 11 14 MET n 11 15 GLN n 11 16 LYS n 11 17 SER n 11 18 LEU n 11 19 GLU n 11 20 VAL n 11 21 LEU n 11 22 GLU n 11 23 HIS n 11 24 ASN n 11 25 LEU n 11 26 ALA n 11 27 GLY n 11 28 LEU n 11 29 ARG n 11 30 THR n 11 31 GLY n 11 32 ARG n 11 33 ALA n 11 34 ASN n 11 35 PRO n 11 36 ALA n 11 37 LEU n 11 38 LEU n 11 39 LEU n 11 40 HIS n 11 41 LEU n 11 42 LYS n 11 43 VAL n 11 44 GLU n 11 45 TYR n 11 46 TYR n 11 47 GLY n 11 48 ALA n 11 49 HIS n 11 50 VAL n 11 51 PRO n 11 52 LEU n 11 53 ASN n 11 54 GLN n 11 55 ILE n 11 56 ALA n 11 57 THR n 11 58 VAL n 11 59 THR n 11 60 ALA n 11 61 PRO n 11 62 ASP n 11 63 PRO n 11 64 ARG n 11 65 THR n 11 66 LEU n 11 67 VAL n 11 68 VAL n 11 69 GLN n 11 70 SER n 11 71 TRP n 11 72 ASP n 11 73 GLN n 11 74 ASN n 11 75 ALA n 11 76 LEU n 11 77 LYS n 11 78 ALA n 11 79 ILE n 11 80 GLU n 11 81 LYS n 11 82 ALA n 11 83 ILE n 11 84 ARG n 11 85 ASP n 11 86 SER n 11 87 ASP n 11 88 LEU n 11 89 GLY n 11 90 LEU n 11 91 ASN n 11 92 PRO n 11 93 SER n 11 94 ASN n 11 95 LYS n 11 96 GLY n 11 97 ASP n 11 98 ALA n 11 99 LEU n 11 100 TYR n 11 101 ILE n 11 102 ASN n 11 103 ILE n 11 104 PRO n 11 105 PRO n 11 106 LEU n 11 107 THR n 11 108 GLU n 11 109 GLU n 11 110 ARG n 11 111 ARG n 11 112 LYS n 11 113 ASP n 11 114 LEU n 11 115 VAL n 11 116 ARG n 11 117 ALA n 11 118 VAL n 11 119 ARG n 11 120 GLN n 11 121 TYR n 11 122 ALA n 11 123 GLU n 11 124 GLU n 11 125 GLY n 11 126 ARG n 11 127 VAL n 11 128 ALA n 11 129 ILE n 11 130 ARG n 11 131 ASN n 11 132 ILE n 11 133 ARG n 11 134 ARG n 11 135 GLU n 11 136 ALA n 11 137 LEU n 11 138 ASP n 11 139 LYS n 11 140 LEU n 11 141 LYS n 11 142 LYS n 11 143 LEU n 11 144 ALA n 11 145 LYS n 11 146 GLU n 11 147 LEU n 11 148 HIS n 11 149 LEU n 11 150 SER n 11 151 GLU n 11 152 ASP n 11 153 GLU n 11 154 THR n 11 155 LYS n 11 156 ARG n 11 157 ALA n 11 158 GLU n 11 159 ALA n 11 160 GLU n 11 161 ILE n 11 162 GLN n 11 163 LYS n 11 164 ILE n 11 165 THR n 11 166 ASP n 11 167 GLU n 11 168 PHE n 11 169 ILE n 11 170 ALA n 11 171 LYS n 11 172 ALA n 11 173 ASP n 11 174 GLN n 11 175 LEU n 11 176 ALA n 11 177 GLU n 11 178 LYS n 11 179 LYS n 11 180 GLU n 11 181 GLN n 11 182 GLU n 11 183 ILE n 11 184 LEU n 11 185 GLY n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 5 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 6 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 7 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 8 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 9 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 10 1 sample ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 11 1 sample ? ? ? 'Thermus thermophilus' 274 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1055 1055 G G A . n A 1 2 G 2 1056 1056 G G A . n A 1 3 A 3 1057 1057 A A A . n A 1 4 U 4 1058 1058 U U A . n A 1 5 G 5 1059 1059 G G A . n A 1 6 U 6 1060 1060 U U A . n A 1 7 U 7 1061 1061 U U A . n A 1 8 G 8 1062 1062 G G A . n A 1 9 G 9 1063 1063 G G A . n A 1 10 C 10 1064 1064 C C A . n A 1 11 U 11 1065 1065 U U A . n A 1 12 U 12 1066 1066 U U A . n A 1 13 A 13 1067 1067 A A A . n A 1 14 G 14 1068 1068 G G A . n A 1 15 A 15 1069 1069 A A A . n A 1 16 A 16 1070 1070 A A A . n A 1 17 G 17 1071 1071 G G A . n A 1 18 C 18 1072 1072 C C A . n A 1 19 A 19 1073 1073 A A A . n A 1 20 G 20 1074 1074 G G A . n A 1 21 C 21 1075 1075 C C A . n A 1 22 C 22 1076 1076 C C A . n A 1 23 A 23 1077 1077 A A A . n A 1 24 U 24 1078 1078 U U A . n A 1 25 C 25 1079 1079 C C A . n A 1 26 A 26 1080 1080 A A A . n A 1 27 U 27 1081 1081 U U A . n A 1 28 U 28 1082 1082 U U A . n A 1 29 U 29 1083 1083 U U A . n A 1 30 A 30 1084 1084 A A A . n A 1 31 A 31 1085 1085 A A A . n A 1 32 A 32 1086 1086 A A A . n A 1 33 G 33 1087 1087 G G A . n A 1 34 A 34 1088 1088 A A A . n A 1 35 A 35 1089 1089 A A A . n A 1 36 A 36 1090 1090 A A A . n A 1 37 G 37 1091 1091 G G A . n A 1 38 C 38 1092 1092 C C A . n A 1 39 G 39 1093 1093 G G A . n A 1 40 U 40 1094 1094 U U A . n A 1 41 A 41 1095 1095 A A A . n A 1 42 A 42 1096 1096 A A A . n A 1 43 U 43 1097 1097 U U A . n A 1 44 A 44 1098 1098 A A A . n A 1 45 G 45 1099 1099 G G A . n A 1 46 C 46 1100 1100 C C A . n A 1 47 U 47 1101 1101 U U A . n A 1 48 C 48 1102 1102 C C A . n A 1 49 A 49 1103 1103 A A A . n A 1 50 C 50 1104 1104 C C A . n B 2 1 C 1 1905 1905 C C B . n B 2 2 G 2 1906 1906 G G B . n B 2 3 G 3 1907 1907 G G B . n B 2 4 C 4 1908 1908 C C B . n B 2 5 C 5 1909 1909 C C B . n B 2 6 G 6 1910 1910 G G B . n B 2 7 U 7 1911 1911 U U B . n B 2 8 A 8 1912 1912 A A B . n B 2 9 A 9 1913 1913 A A B . n B 2 10 C 10 1914 1914 C C B . n B 2 11 U 11 1915 1915 U U B . n B 2 12 A 12 1916 1916 A A B . n B 2 13 U 13 1917 1917 U U B . n B 2 14 A 14 1918 1918 A A B . n B 2 15 A 15 1919 1919 A A B . n B 2 16 C 16 1920 1920 C C B . n B 2 17 G 17 1921 1921 G G B . n B 2 18 G 18 1922 1922 G G B . n B 2 19 U 19 1923 1923 U U B . n B 2 20 C 20 1924 1924 C C B . n B 2 21 C 21 1925 1925 C C B . n B 2 22 U 22 1926 1926 U U B . n C 3 1 G 1 1945 1945 G G C . n C 3 2 U 2 1946 1946 U U C . n C 3 3 C 3 1947 1947 C C C . n C 3 4 G 4 1948 1948 G G C . n C 3 5 G 5 1949 1949 G G C . n C 3 6 G 6 1950 1950 G G C . n C 3 7 U 7 1951 1951 U U C . n C 3 8 A 8 1952 1952 A A C . n C 3 9 A 9 1953 1953 A A C . n C 3 10 G 10 1954 1954 G G C . n C 3 11 U 11 1955 1955 U U C . n C 3 12 U 12 1956 1956 U U C . n C 3 13 C 13 1957 1957 C C C . n C 3 14 C 14 1958 1958 C C C . n C 3 15 G 15 1959 1959 G G C . n C 3 16 A 16 1960 1960 A A C . n C 3 17 C 17 1961 1961 C C C . n D 4 1 G 1 2246 2246 G G D . n D 4 2 A 2 2247 2247 A A D . n D 4 3 C 3 2248 2248 C C D . n D 4 4 U 4 2249 2249 U U D . n D 4 5 G 5 2250 2250 G G D . n D 4 6 G 6 2251 2251 G G D . n D 4 7 G 7 2252 2252 G G D . n D 4 8 G 8 2253 2253 G G D . n D 4 9 C 9 2254 2254 C C D . n D 4 10 G 10 2255 2255 G G D . n D 4 11 G 11 2256 2256 G G D . n D 4 12 U 12 2257 2257 U U D . n D 4 13 C 13 2258 2258 C C D . n E 5 1 G 1 2588 2588 G G E . n E 5 2 A 2 2589 2589 A A E . n E 5 3 A 3 2590 2590 A A E . n E 5 4 C 4 2591 2591 C C E . n E 5 5 G 5 2592 2592 G G E . n E 5 6 U 6 2593 2593 U U E . n E 5 7 C 7 2594 2594 C C E . n E 5 8 G 8 2595 2595 G G E . n E 5 9 U 9 2596 2596 U U E . n E 5 10 G 10 2597 2597 G G E . n E 5 11 A 11 2598 2598 A A E . n E 5 12 G 12 2599 2599 G G E . n E 5 13 A 13 2600 2600 A A E . n E 5 14 C 14 2601 2601 C C E . n E 5 15 A 15 2602 2602 A A E . n E 5 16 G 16 2603 2603 G G E . n E 5 17 U 17 2604 2604 U U E . n E 5 18 U 18 2605 2605 U U E . n E 5 19 C 19 2606 2606 C C E . n F 6 1 C 1 2651 2651 C C F . n F 6 2 C 2 2652 2652 C C F . n F 6 3 U 3 2653 2653 U U F . n F 6 4 A 4 2654 2654 A A F . n F 6 5 G 5 2655 2655 G G F . n F 6 6 U 6 2656 2656 U U F . n F 6 7 A 7 2657 2657 A A F . n F 6 8 C 8 2658 2658 C C F . n F 6 9 G 9 2659 2659 G G F . n F 6 10 A 10 2660 2660 A A F . n F 6 11 G 11 2661 2661 G G F . n F 6 12 A 12 2662 2662 A A F . n F 6 13 G 13 2663 2663 G G F . n F 6 14 G 14 2664 2664 G G F . n F 6 15 A 15 2665 2665 A A F . n F 6 16 C 16 2666 2666 C C F . n F 6 17 C 17 2667 2667 C C F . n F 6 18 G 18 2668 2668 G G F . n F 6 19 G 19 2669 2669 G G F . n G 7 1 ALA 1 1 1 ALA ALA G . n G 7 2 LYS 2 2 2 LYS LYS G . n G 7 3 LYS 3 3 3 LYS LYS G . n G 7 4 VAL 4 4 4 VAL VAL G . n G 7 5 GLN 5 5 5 GLN GLN G . n G 7 6 ALA 6 6 6 ALA ALA G . n G 7 7 TYR 7 7 7 TYR TYR G . n G 7 8 VAL 8 8 8 VAL VAL G . n G 7 9 LYS 9 9 9 LYS LYS G . n G 7 10 LEU 10 10 10 LEU LEU G . n G 7 11 GLN 11 11 11 GLN GLN G . n G 7 12 VAL 12 12 12 VAL VAL G . n G 7 13 ALA 13 13 13 ALA ALA G . n G 7 14 ALA 14 14 14 ALA ALA G . n G 7 15 GLY 15 15 15 GLY GLY G . n G 7 16 MET 16 16 16 MET MET G . n G 7 17 ALA 17 17 17 ALA ALA G . n G 7 18 ASN 18 18 18 ASN ASN G . n G 7 19 PRO 19 19 19 PRO PRO G . n G 7 20 SER 20 20 20 SER SER G . n G 7 21 PRO 21 21 21 PRO PRO G . n G 7 22 PRO 22 22 22 PRO PRO G . n G 7 23 VAL 23 23 23 VAL VAL G . n G 7 24 GLY 24 24 24 GLY GLY G . n G 7 25 PRO 25 25 25 PRO PRO G . n G 7 26 ALA 26 26 26 ALA ALA G . n G 7 27 LEU 27 27 27 LEU LEU G . n G 7 28 GLY 28 28 28 GLY GLY G . n G 7 29 GLN 29 29 29 GLN GLN G . n G 7 30 GLN 30 30 30 GLN GLN G . n G 7 31 GLY 31 31 31 GLY GLY G . n G 7 32 VAL 32 32 32 VAL VAL G . n G 7 33 ASN 33 33 33 ASN ASN G . n G 7 34 ILE 34 34 34 ILE ILE G . n G 7 35 MET 35 35 35 MET MET G . n G 7 36 GLU 36 36 36 GLU GLU G . n G 7 37 PHE 37 37 37 PHE PHE G . n G 7 38 CYS 38 38 38 CYS CYS G . n G 7 39 LYS 39 39 39 LYS LYS G . n G 7 40 ALA 40 40 40 ALA ALA G . n G 7 41 PHE 41 41 41 PHE PHE G . n G 7 42 ASN 42 42 42 ASN ASN G . n G 7 43 ALA 43 43 43 ALA ALA G . n G 7 44 LYS 44 44 44 LYS LYS G . n G 7 45 THR 45 45 45 THR THR G . n G 7 46 ASP 46 46 46 ASP ASP G . n G 7 47 SER 47 47 47 SER SER G . n G 7 48 ILE 48 48 48 ILE ILE G . n G 7 49 GLU 49 49 49 GLU GLU G . n G 7 50 LYS 50 50 50 LYS LYS G . n G 7 51 GLY 51 51 51 GLY GLY G . n G 7 52 LEU 52 52 52 LEU LEU G . n G 7 53 PRO 53 53 53 PRO PRO G . n G 7 54 ILE 54 54 54 ILE ILE G . n G 7 55 PRO 55 55 55 PRO PRO G . n G 7 56 VAL 56 56 56 VAL VAL G . n G 7 57 VAL 57 57 57 VAL VAL G . n G 7 58 ILE 58 58 58 ILE ILE G . n G 7 59 THR 59 59 59 THR THR G . n G 7 60 VAL 60 60 60 VAL VAL G . n G 7 61 TYR 61 61 61 TYR TYR G . n G 7 62 ALA 62 62 62 ALA ALA G . n G 7 63 ASP 63 63 63 ASP ASP G . n G 7 64 ARG 64 64 64 ARG ARG G . n G 7 65 SER 65 65 65 SER SER G . n G 7 66 PHE 66 66 66 PHE PHE G . n G 7 67 THR 67 67 67 THR THR G . n G 7 68 PHE 68 68 68 PHE PHE G . n G 7 69 VAL 69 69 69 VAL VAL G . n G 7 70 THR 70 70 70 THR THR G . n G 7 71 LYS 71 71 71 LYS LYS G . n G 7 72 THR 72 72 72 THR THR G . n G 7 73 PRO 73 73 73 PRO PRO G . n G 7 74 PRO 74 74 74 PRO PRO G . n G 7 75 ALA 75 75 75 ALA ALA G . n G 7 76 ALA 76 76 76 ALA ALA G . n G 7 77 VAL 77 77 77 VAL VAL G . n G 7 78 LEU 78 78 78 LEU LEU G . n G 7 79 LEU 79 79 79 LEU LEU G . n G 7 80 LYS 80 80 80 LYS LYS G . n G 7 81 LYS 81 81 81 LYS LYS G . n G 7 82 ALA 82 82 82 ALA ALA G . n G 7 83 ALA 83 83 83 ALA ALA G . n G 7 84 GLY 84 84 84 GLY GLY G . n G 7 85 ILE 85 85 85 ILE ILE G . n G 7 86 LYS 86 86 86 LYS LYS G . n G 7 87 SER 87 87 87 SER SER G . n G 7 88 GLY 88 88 88 GLY GLY G . n G 7 89 SER 89 89 89 SER SER G . n G 7 90 GLY 90 90 90 GLY GLY G . n G 7 91 LYS 91 91 91 LYS LYS G . n G 7 92 PRO 92 92 92 PRO PRO G . n G 7 93 ASN 93 93 93 ASN ASN G . n G 7 94 LYS 94 94 94 LYS LYS G . n G 7 95 ASP 95 95 95 ASP ASP G . n G 7 96 LYS 96 96 96 LYS LYS G . n G 7 97 VAL 97 97 97 VAL VAL G . n G 7 98 GLY 98 98 98 GLY GLY G . n G 7 99 LYS 99 99 99 LYS LYS G . n G 7 100 ILE 100 100 100 ILE ILE G . n G 7 101 SER 101 101 101 SER SER G . n G 7 102 ARG 102 102 102 ARG ARG G . n G 7 103 ALA 103 103 103 ALA ALA G . n G 7 104 GLN 104 104 104 GLN GLN G . n G 7 105 LEU 105 105 105 LEU LEU G . n G 7 106 GLN 106 106 106 GLN GLN G . n G 7 107 GLU 107 107 107 GLU GLU G . n G 7 108 ILE 108 108 108 ILE ILE G . n G 7 109 ALA 109 109 109 ALA ALA G . n G 7 110 GLN 110 110 110 GLN GLN G . n G 7 111 THR 111 111 111 THR THR G . n G 7 112 LYS 112 112 112 LYS LYS G . n G 7 113 ALA 113 113 113 ALA ALA G . n G 7 114 ALA 114 114 114 ALA ALA G . n G 7 115 ASP 115 115 115 ASP ASP G . n G 7 116 MET 116 116 116 MET MET G . n G 7 117 THR 117 117 117 THR THR G . n G 7 118 GLY 118 118 118 GLY GLY G . n G 7 119 ALA 119 119 119 ALA ALA G . n G 7 120 ASP 120 120 120 ASP ASP G . n G 7 121 ILE 121 121 121 ILE ILE G . n G 7 122 GLU 122 122 122 GLU GLU G . n G 7 123 ALA 123 123 123 ALA ALA G . n G 7 124 MET 124 124 124 MET MET G . n G 7 125 THR 125 125 125 THR THR G . n G 7 126 ARG 126 126 126 ARG ARG G . n G 7 127 SER 127 127 127 SER SER G . n G 7 128 ILE 128 128 128 ILE ILE G . n G 7 129 GLU 129 129 129 GLU GLU G . n G 7 130 GLY 130 130 130 GLY GLY G . n G 7 131 THR 131 131 131 THR THR G . n G 7 132 ALA 132 132 132 ALA ALA G . n G 7 133 ARG 133 133 133 ARG ARG G . n G 7 134 SER 134 134 134 SER SER G . n G 7 135 MET 135 135 135 MET MET G . n G 7 136 GLY 136 136 136 GLY GLY G . n G 7 137 LEU 137 137 137 LEU LEU G . n G 7 138 VAL 138 138 138 VAL VAL G . n G 7 139 VAL 139 139 139 VAL VAL G . n G 7 140 GLU 140 140 140 GLU GLU G . n G 7 141 ASP 141 141 141 ASP ASP G . n H 8 1 C 1 1404 1404 C C H . n H 8 2 G 2 1405 1405 G G H . n H 8 3 U 3 1406 1406 U U H . n H 8 4 C 4 1407 1407 C C H . n H 8 5 A 5 1408 1408 A A H . n H 8 6 C 6 1409 1409 C C H . n H 8 7 A 7 1410 1410 A A H . n H 8 8 C 8 1411 1411 C C H . n H 8 9 C 9 1412 1412 C C H . n H 8 10 A 10 1413 1413 A A H . n H 8 11 U 11 1414 1414 U U H . n H 8 12 G 12 1415 1415 G G H . n H 8 13 G 13 1416 1416 G G H . n H 8 14 G 14 1417 1417 G G H . n H 8 15 A 15 1418 1418 A A H . n H 8 16 G 16 1419 1419 G G H . n H 8 17 U 17 1420 1420 U U H . n H 8 18 G 18 1421 1421 G G H . n I 9 1 C 1 1479 1479 C C h . n I 9 2 A 2 1480 1480 A A h . n I 9 3 U 3 1481 1481 U U h . n I 9 4 G 4 1482 1482 G G h . n I 9 5 A 5 1483 1483 A A h . n I 9 6 C 6 1484 1484 C C h . n I 9 7 U 7 1485 1485 U U h . n I 9 8 G 8 1486 1486 G G h . n I 9 9 G 9 1487 1487 G G h . n I 9 10 G 10 1488 1488 G G h . n I 9 11 G 11 1489 1489 G G h . n I 9 12 U 12 1490 1490 U U h . n I 9 13 G 13 1491 1491 G G h . n I 9 14 A 14 1492 1492 A A h . n I 9 15 A 15 1493 1493 A A h . n I 9 16 G 16 1494 1494 G G h . n I 9 17 U 17 1495 1495 U U h . n I 9 18 C 18 1496 1496 C C h . n I 9 19 G 19 1497 1497 G G h . n J 10 1 ALA 1 1 1 ALA ALA I . n J 10 2 THR 2 2 2 THR THR I . n J 10 3 VAL 3 3 3 VAL VAL I . n J 10 4 ASN 4 4 4 ASN ASN I . n J 10 5 GLN 5 5 5 GLN GLN I . n J 10 6 LEU 6 6 6 LEU LEU I . n J 10 7 VAL 7 7 7 VAL VAL I . n J 10 8 ARG 8 8 8 ARG ARG I . n J 10 9 LYS 9 9 9 LYS LYS I . n J 10 10 PRO 10 10 10 PRO PRO I . n J 10 11 ARG 11 11 11 ARG ARG I . n J 10 12 ALA 12 12 12 ALA ALA I . n J 10 13 ARG 13 13 13 ARG ARG I . n J 10 14 LYS 14 14 14 LYS LYS I . n J 10 15 VAL 15 15 15 VAL VAL I . n J 10 16 ALA 16 16 16 ALA ALA I . n J 10 17 LYS 17 17 17 LYS LYS I . n J 10 18 SER 18 18 18 SER SER I . n J 10 19 ASN 19 19 19 ASN ASN I . n J 10 20 VAL 20 20 20 VAL VAL I . n J 10 21 PRO 21 21 21 PRO PRO I . n J 10 22 ALA 22 22 22 ALA ALA I . n J 10 23 LEU 23 23 23 LEU LEU I . n J 10 24 GLU 24 24 24 GLU GLU I . n J 10 25 ALA 25 25 25 ALA ALA I . n J 10 26 CYS 26 26 26 CYS CYS I . n J 10 27 PRO 27 27 27 PRO PRO I . n J 10 28 GLN 28 28 28 GLN GLN I . n J 10 29 LYS 29 29 29 LYS LYS I . n J 10 30 ARG 30 30 30 ARG ARG I . n J 10 31 GLY 31 31 31 GLY GLY I . n J 10 32 VAL 32 32 32 VAL VAL I . n J 10 33 CYS 33 33 33 CYS CYS I . n J 10 34 THR 34 34 34 THR THR I . n J 10 35 ARG 35 35 35 ARG ARG I . n J 10 36 VAL 36 36 36 VAL VAL I . n J 10 37 TYR 37 37 37 TYR TYR I . n J 10 38 THR 38 38 38 THR THR I . n J 10 39 THR 39 39 39 THR THR I . n J 10 40 THR 40 40 40 THR THR I . n J 10 41 PRO 41 41 41 PRO PRO I . n J 10 42 LYS 42 42 42 LYS LYS I . n J 10 43 LYS 43 43 43 LYS LYS I . n J 10 44 PRO 44 44 44 PRO PRO I . n J 10 45 ASN 45 45 45 ASN ASN I . n J 10 46 SER 46 46 46 SER SER I . n J 10 47 ALA 47 47 47 ALA ALA I . n J 10 48 LEU 48 48 48 LEU LEU I . n J 10 49 ARG 49 49 49 ARG ARG I . n J 10 50 LYS 50 50 50 LYS LYS I . n J 10 51 VAL 51 51 51 VAL VAL I . n J 10 52 CYS 52 52 52 CYS CYS I . n J 10 53 ARG 53 53 53 ARG ARG I . n J 10 54 VAL 54 54 54 VAL VAL I . n J 10 55 ARG 55 55 55 ARG ARG I . n J 10 56 LEU 56 56 56 LEU LEU I . n J 10 57 THR 57 57 57 THR THR I . n J 10 58 ASN 58 58 58 ASN ASN I . n J 10 59 GLY 59 59 59 GLY GLY I . n J 10 60 PHE 60 60 60 PHE PHE I . n J 10 61 GLU 61 61 61 GLU GLU I . n J 10 62 VAL 62 62 62 VAL VAL I . n J 10 63 THR 63 63 63 THR THR I . n J 10 64 SER 64 64 64 SER SER I . n J 10 65 TYR 65 65 65 TYR TYR I . n J 10 66 ILE 66 66 66 ILE ILE I . n J 10 67 GLY 67 67 67 GLY GLY I . n J 10 68 GLY 68 68 68 GLY GLY I . n J 10 69 GLU 69 69 69 GLU GLU I . n J 10 70 GLY 70 70 70 GLY GLY I . n J 10 71 HIS 71 71 71 HIS HIS I . n J 10 72 ASN 72 72 72 ASN ASN I . n J 10 73 LEU 73 73 73 LEU LEU I . n J 10 74 GLN 74 74 74 GLN GLN I . n J 10 75 GLU 75 75 75 GLU GLU I . n J 10 76 HIS 76 76 76 HIS HIS I . n J 10 77 SER 77 77 77 SER SER I . n J 10 78 VAL 78 78 78 VAL VAL I . n J 10 79 ILE 79 79 79 ILE ILE I . n J 10 80 LEU 80 80 80 LEU LEU I . n J 10 81 ILE 81 81 81 ILE ILE I . n J 10 82 ARG 82 82 82 ARG ARG I . n J 10 83 GLY 83 83 83 GLY GLY I . n J 10 84 GLY 84 84 84 GLY GLY I . n J 10 85 ARG 85 85 85 ARG ARG I . n J 10 86 VAL 86 86 86 VAL VAL I . n J 10 87 LYS 87 87 87 LYS LYS I . n J 10 88 ASP 88 88 88 ASP ASP I . n J 10 89 LEU 89 89 89 LEU LEU I . n J 10 90 PRO 90 90 90 PRO PRO I . n J 10 91 GLY 91 91 91 GLY GLY I . n J 10 92 VAL 92 92 92 VAL VAL I . n J 10 93 ARG 93 93 93 ARG ARG I . n J 10 94 TYR 94 94 94 TYR TYR I . n J 10 95 HIS 95 95 95 HIS HIS I . n J 10 96 THR 96 96 96 THR THR I . n J 10 97 VAL 97 97 97 VAL VAL I . n J 10 98 ARG 98 98 98 ARG ARG I . n J 10 99 GLY 99 99 99 GLY GLY I . n J 10 100 ALA 100 100 100 ALA ALA I . n J 10 101 LEU 101 101 101 LEU LEU I . n J 10 102 ASP 102 102 102 ASP ASP I . n J 10 103 CYS 103 103 103 CYS CYS I . n J 10 104 SER 104 104 104 SER SER I . n J 10 105 GLY 105 105 105 GLY GLY I . n J 10 106 VAL 106 106 106 VAL VAL I . n J 10 107 LYS 107 107 107 LYS LYS I . n J 10 108 ASP 108 108 108 ASP ASP I . n J 10 109 ARG 109 109 109 ARG ARG I . n J 10 110 LYS 110 110 110 LYS LYS I . n J 10 111 GLN 111 111 111 GLN GLN I . n J 10 112 ALA 112 112 112 ALA ALA I . n J 10 113 ARG 113 113 113 ARG ARG I . n J 10 114 SER 114 114 114 SER SER I . n J 10 115 LYS 115 115 115 LYS LYS I . n J 10 116 TYR 116 116 116 TYR TYR I . n J 10 117 GLY 117 117 117 GLY GLY I . n J 10 118 VAL 118 118 118 VAL VAL I . n J 10 119 LYS 119 119 119 LYS LYS I . n J 10 120 ARG 120 120 120 ARG ARG I . n J 10 121 PRO 121 121 121 PRO PRO I . n J 10 122 LYS 122 122 122 LYS LYS I . n J 10 123 ALA 123 123 123 ALA ALA I . n K 11 1 MET 1 1 1 MET MET J . n K 11 2 THR 2 2 2 THR THR J . n K 11 3 LEU 3 3 3 LEU LEU J . n K 11 4 LYS 4 4 4 LYS LYS J . n K 11 5 GLU 5 5 5 GLU GLU J . n K 11 6 LEU 6 6 6 LEU LEU J . n K 11 7 TYR 7 7 7 TYR TYR J . n K 11 8 ALA 8 8 8 ALA ALA J . n K 11 9 GLU 9 9 9 GLU GLU J . n K 11 10 THR 10 10 10 THR THR J . n K 11 11 ARG 11 11 11 ARG ARG J . n K 11 12 SER 12 12 12 SER SER J . n K 11 13 HIS 13 13 13 HIS HIS J . n K 11 14 MET 14 14 14 MET MET J . n K 11 15 GLN 15 15 15 GLN GLN J . n K 11 16 LYS 16 16 16 LYS LYS J . n K 11 17 SER 17 17 17 SER SER J . n K 11 18 LEU 18 18 18 LEU LEU J . n K 11 19 GLU 19 19 19 GLU GLU J . n K 11 20 VAL 20 20 20 VAL VAL J . n K 11 21 LEU 21 21 21 LEU LEU J . n K 11 22 GLU 22 22 22 GLU GLU J . n K 11 23 HIS 23 23 23 HIS HIS J . n K 11 24 ASN 24 24 24 ASN ASN J . n K 11 25 LEU 25 25 25 LEU LEU J . n K 11 26 ALA 26 26 26 ALA ALA J . n K 11 27 GLY 27 27 27 GLY GLY J . n K 11 28 LEU 28 28 28 LEU LEU J . n K 11 29 ARG 29 29 29 ARG ARG J . n K 11 30 THR 30 30 30 THR THR J . n K 11 31 GLY 31 31 31 GLY GLY J . n K 11 32 ARG 32 32 32 ARG ARG J . n K 11 33 ALA 33 33 33 ALA ALA J . n K 11 34 ASN 34 34 34 ASN ASN J . n K 11 35 PRO 35 35 35 PRO PRO J . n K 11 36 ALA 36 36 36 ALA ALA J . n K 11 37 LEU 37 37 37 LEU LEU J . n K 11 38 LEU 38 38 38 LEU LEU J . n K 11 39 LEU 39 39 39 LEU LEU J . n K 11 40 HIS 40 40 40 HIS HIS J . n K 11 41 LEU 41 41 41 LEU LEU J . n K 11 42 LYS 42 42 42 LYS LYS J . n K 11 43 VAL 43 43 43 VAL VAL J . n K 11 44 GLU 44 44 44 GLU GLU J . n K 11 45 TYR 45 45 45 TYR TYR J . n K 11 46 TYR 46 46 46 TYR TYR J . n K 11 47 GLY 47 47 47 GLY GLY J . n K 11 48 ALA 48 48 48 ALA ALA J . n K 11 49 HIS 49 49 49 HIS HIS J . n K 11 50 VAL 50 50 50 VAL VAL J . n K 11 51 PRO 51 51 51 PRO PRO J . n K 11 52 LEU 52 52 52 LEU LEU J . n K 11 53 ASN 53 53 53 ASN ASN J . n K 11 54 GLN 54 54 54 GLN GLN J . n K 11 55 ILE 55 55 55 ILE ILE J . n K 11 56 ALA 56 56 56 ALA ALA J . n K 11 57 THR 57 57 57 THR THR J . n K 11 58 VAL 58 58 58 VAL VAL J . n K 11 59 THR 59 59 59 THR THR J . n K 11 60 ALA 60 60 60 ALA ALA J . n K 11 61 PRO 61 61 61 PRO PRO J . n K 11 62 ASP 62 62 62 ASP ASP J . n K 11 63 PRO 63 63 63 PRO PRO J . n K 11 64 ARG 64 64 64 ARG ARG J . n K 11 65 THR 65 65 65 THR THR J . n K 11 66 LEU 66 66 66 LEU LEU J . n K 11 67 VAL 67 67 67 VAL VAL J . n K 11 68 VAL 68 68 68 VAL VAL J . n K 11 69 GLN 69 69 69 GLN GLN J . n K 11 70 SER 70 70 70 SER SER J . n K 11 71 TRP 71 71 71 TRP TRP J . n K 11 72 ASP 72 72 72 ASP ASP J . n K 11 73 GLN 73 73 73 GLN GLN J . n K 11 74 ASN 74 74 74 ASN ASN J . n K 11 75 ALA 75 75 75 ALA ALA J . n K 11 76 LEU 76 76 76 LEU LEU J . n K 11 77 LYS 77 77 77 LYS LYS J . n K 11 78 ALA 78 78 78 ALA ALA J . n K 11 79 ILE 79 79 79 ILE ILE J . n K 11 80 GLU 80 80 80 GLU GLU J . n K 11 81 LYS 81 81 81 LYS LYS J . n K 11 82 ALA 82 82 82 ALA ALA J . n K 11 83 ILE 83 83 83 ILE ILE J . n K 11 84 ARG 84 84 84 ARG ARG J . n K 11 85 ASP 85 85 85 ASP ASP J . n K 11 86 SER 86 86 86 SER SER J . n K 11 87 ASP 87 87 87 ASP ASP J . n K 11 88 LEU 88 88 88 LEU LEU J . n K 11 89 GLY 89 89 89 GLY GLY J . n K 11 90 LEU 90 90 90 LEU LEU J . n K 11 91 ASN 91 91 91 ASN ASN J . n K 11 92 PRO 92 92 92 PRO PRO J . n K 11 93 SER 93 93 93 SER SER J . n K 11 94 ASN 94 94 94 ASN ASN J . n K 11 95 LYS 95 95 95 LYS LYS J . n K 11 96 GLY 96 96 96 GLY GLY J . n K 11 97 ASP 97 97 97 ASP ASP J . n K 11 98 ALA 98 98 98 ALA ALA J . n K 11 99 LEU 99 99 99 LEU LEU J . n K 11 100 TYR 100 100 100 TYR TYR J . n K 11 101 ILE 101 101 101 ILE ILE J . n K 11 102 ASN 102 102 102 ASN ASN J . n K 11 103 ILE 103 103 103 ILE ILE J . n K 11 104 PRO 104 104 104 PRO PRO J . n K 11 105 PRO 105 105 105 PRO PRO J . n K 11 106 LEU 106 106 106 LEU LEU J . n K 11 107 THR 107 107 107 THR THR J . n K 11 108 GLU 108 108 108 GLU GLU J . n K 11 109 GLU 109 109 109 GLU GLU J . n K 11 110 ARG 110 110 110 ARG ARG J . n K 11 111 ARG 111 111 111 ARG ARG J . n K 11 112 LYS 112 112 112 LYS LYS J . n K 11 113 ASP 113 113 113 ASP ASP J . n K 11 114 LEU 114 114 114 LEU LEU J . n K 11 115 VAL 115 115 115 VAL VAL J . n K 11 116 ARG 116 116 116 ARG ARG J . n K 11 117 ALA 117 117 117 ALA ALA J . n K 11 118 VAL 118 118 118 VAL VAL J . n K 11 119 ARG 119 119 119 ARG ARG J . n K 11 120 GLN 120 120 120 GLN GLN J . n K 11 121 TYR 121 121 121 TYR TYR J . n K 11 122 ALA 122 122 122 ALA ALA J . n K 11 123 GLU 123 123 123 GLU GLU J . n K 11 124 GLU 124 124 124 GLU GLU J . n K 11 125 GLY 125 125 125 GLY GLY J . n K 11 126 ARG 126 126 126 ARG ARG J . n K 11 127 VAL 127 127 127 VAL VAL J . n K 11 128 ALA 128 128 128 ALA ALA J . n K 11 129 ILE 129 129 129 ILE ILE J . n K 11 130 ARG 130 130 130 ARG ARG J . n K 11 131 ASN 131 131 131 ASN ASN J . n K 11 132 ILE 132 132 132 ILE ILE J . n K 11 133 ARG 133 133 133 ARG ARG J . n K 11 134 ARG 134 134 134 ARG ARG J . n K 11 135 GLU 135 135 135 GLU GLU J . n K 11 136 ALA 136 136 136 ALA ALA J . n K 11 137 LEU 137 137 137 LEU LEU J . n K 11 138 ASP 138 138 138 ASP ASP J . n K 11 139 LYS 139 139 139 LYS LYS J . n K 11 140 LEU 140 140 140 LEU LEU J . n K 11 141 LYS 141 141 141 LYS LYS J . n K 11 142 LYS 142 142 142 LYS LYS J . n K 11 143 LEU 143 143 143 LEU LEU J . n K 11 144 ALA 144 144 144 ALA ALA J . n K 11 145 LYS 145 145 145 LYS LYS J . n K 11 146 GLU 146 146 146 GLU GLU J . n K 11 147 LEU 147 147 147 LEU LEU J . n K 11 148 HIS 148 148 148 HIS HIS J . n K 11 149 LEU 149 149 149 LEU LEU J . n K 11 150 SER 150 150 150 SER SER J . n K 11 151 GLU 151 151 151 GLU GLU J . n K 11 152 ASP 152 152 152 ASP ASP J . n K 11 153 GLU 153 153 153 GLU GLU J . n K 11 154 THR 154 154 154 THR THR J . n K 11 155 LYS 155 155 155 LYS LYS J . n K 11 156 ARG 156 156 156 ARG ARG J . n K 11 157 ALA 157 157 157 ALA ALA J . n K 11 158 GLU 158 158 158 GLU GLU J . n K 11 159 ALA 159 159 159 ALA ALA J . n K 11 160 GLU 160 160 160 GLU GLU J . n K 11 161 ILE 161 161 161 ILE ILE J . n K 11 162 GLN 162 162 162 GLN GLN J . n K 11 163 LYS 163 163 163 LYS LYS J . n K 11 164 ILE 164 164 164 ILE ILE J . n K 11 165 THR 165 165 165 THR THR J . n K 11 166 ASP 166 166 166 ASP ASP J . n K 11 167 GLU 167 167 167 GLU GLU J . n K 11 168 PHE 168 168 168 PHE PHE J . n K 11 169 ILE 169 169 169 ILE ILE J . n K 11 170 ALA 170 170 170 ALA ALA J . n K 11 171 LYS 171 171 171 LYS LYS J . n K 11 172 ALA 172 172 172 ALA ALA J . n K 11 173 ASP 173 173 173 ASP ASP J . n K 11 174 GLN 174 174 174 GLN GLN J . n K 11 175 LEU 175 175 175 LEU LEU J . n K 11 176 ALA 176 176 176 ALA ALA J . n K 11 177 GLU 177 177 177 GLU GLU J . n K 11 178 LYS 178 178 178 LYS LYS J . n K 11 179 LYS 179 179 179 LYS LYS J . n K 11 180 GLU 180 180 180 GLU GLU J . n K 11 181 GLN 181 181 181 GLN GLN J . n K 11 182 GLU 182 182 182 GLU GLU J . n K 11 183 ILE 183 183 183 ILE ILE J . n K 11 184 LEU 184 184 184 LEU LEU J . n K 11 185 GLY 185 185 185 GLY GLY J . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B G 1907 ? OP1 ? B G 3 OP1 2 1 Y 1 B U 1926 ? "O3'" ? B U 22 "O3'" 3 1 Y 1 E C 2594 ? "O2'" ? E C 7 "O2'" 4 1 Y 1 I ALA 1 ? CA ? J ALA 1 CA # _cell.entry_id 3J0D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J0D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3J0D _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3464 _refine_hist.pdbx_number_atoms_nucleic_acid 3796 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 7260 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J0D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J0D _struct.title 'Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J0D _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text 'ribosome, ribosome recycling factor, TRANSLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 9 ? J N N 10 ? K N N 11 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 GB U00096 1 GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC 226813 U00096.2 ? 2 GB U00096 2 CGGCCGUAACUAUAACGGUCCU 227663 U00096.2 ? 3 GB U00096 3 GUCGGGUAAGUUCCGAC 227703 U00096.2 ? 4 GB U00096 4 GACUGGGGCGGUC 228004 U00096.2 ? 5 GB U00096 5 GAACGUCGUGAGACAGUUC 228346 U00096.2 ? 6 GB U00096 6 CCUAGUACGAGAGGACCGG 228409 U00096.2 ? 7 UNP RL11_ECOLI 7 ;AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED ; 2 P0A7J7 ? 8 GB U00096 8 CGUCACACCAUGGGAGUG 225174 U00096.2 ? 9 GB U00096 9 CAUGACUGGGGUGAAGUCG 225249 U00096.2 ? 10 UNP RS12_ECOLI 10 ;ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA ; 2 P0A7S3 ? 11 UNP RRF_THET8 11 ;MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE IQKITDEFIAKADQLAEKKEQEILG ; 1 Q9WX76 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3J0D A 1 ? 50 ? U00096.2 226813 ? 226862 ? 1055 1104 2 2 3J0D B 1 ? 22 ? U00096.2 227663 ? 227684 ? 1905 1926 3 3 3J0D C 1 ? 17 ? U00096.2 227703 ? 227719 ? 1945 1961 4 4 3J0D D 1 ? 13 ? U00096.2 228004 ? 228016 ? 2246 2258 5 5 3J0D E 1 ? 19 ? U00096.2 228346 ? 228364 ? 2588 2606 6 6 3J0D F 1 ? 19 ? U00096.2 228409 ? 228427 ? 2651 2669 7 7 3J0D G 1 ? 141 ? P0A7J7 2 ? 142 ? 1 141 8 8 3J0D H 1 ? 18 ? U00096.2 225174 ? 225191 ? 1404 1421 9 9 3J0D h 1 ? 19 ? U00096.2 225249 ? 225267 ? 1479 1497 10 10 3J0D I 1 ? 123 ? P0A7S3 2 ? 124 ? 1 123 11 11 3J0D J 1 ? 185 ? Q9WX76 1 ? 185 ? 1 185 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;THE FULL BIOLOGICAL ASSEMBLY IS A COMPLEX OF MRNA, TRNA, RRF, AND RIBOSOME. REMARK 350 REFERS ONLY TO INDIVIDUAL CHAINS THAT WERE MODELED AND DOES NOT REPRESENT THE FULL BIOLOGICAL ASSEMBLY. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY G 24 ? GLN G 29 ? GLY G 24 GLN G 29 1 ? 6 HELX_P HELX_P2 2 ASN G 33 ? GLU G 49 ? ASN G 33 GLU G 49 1 ? 17 HELX_P HELX_P3 3 PRO G 74 ? GLY G 84 ? PRO G 74 GLY G 84 1 ? 11 HELX_P HELX_P4 4 ARG G 102 ? ALA G 113 ? ARG G 102 ALA G 113 1 ? 12 HELX_P HELX_P5 5 ASP G 120 ? GLY G 136 ? ASP G 120 GLY G 136 1 ? 17 HELX_P HELX_P6 6 THR J 2 ? LYS J 9 ? THR I 2 LYS I 9 1 ? 8 HELX_P HELX_P7 7 THR K 2 ? GLY K 27 ? THR J 2 GLY J 27 1 ? 26 HELX_P HELX_P8 8 PRO K 35 ? LEU K 39 ? PRO J 35 LEU J 39 5 ? 5 HELX_P HELX_P9 9 LEU K 52 ? ILE K 55 ? LEU J 52 ILE J 55 1 ? 4 HELX_P HELX_P10 10 ASP K 72 ? ARG K 84 ? ASP J 72 ARG J 84 1 ? 13 HELX_P HELX_P11 11 THR K 107 ? LEU K 147 ? THR J 107 LEU J 147 1 ? 41 HELX_P HELX_P12 12 SER K 150 ? LEU K 184 ? SER J 150 LEU J 184 1 ? 35 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N2 ? ? ? 1_555 A A 31 N3 ? ? A G 1055 A A 1085 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 1055 A C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 1055 A C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 1055 A C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A A 49 N7 ? ? A G 1056 A A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog6 hydrog ? ? A G 2 N3 ? ? ? 1_555 A A 49 N6 ? ? A G 1056 A A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 1057 A U 1081 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 1057 A U 1081 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 1058 A A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 1058 A A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 1059 A C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 1059 A C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 1059 A C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 1062 A C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 1062 A C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 1062 A C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 1063 A C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 1063 A C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 1063 A C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 1064 A G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 1064 A G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 1064 A G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O2 ? ? ? 1_555 A A 19 N6 ? ? A U 1065 A A 1073 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog24 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 1071 A G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 1071 A G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 1071 A C 1100 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog27 hydrog ? ? A C 18 O2 ? ? ? 1_555 A C 38 N4 ? ? A C 1072 A C 1092 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog28 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 1072 A G 1099 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog29 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 1082 A A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog30 hydrog ? ? A U 28 O2 ? ? ? 1_555 A A 32 N6 ? ? A U 1082 A A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog31 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 1083 A A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog32 hydrog ? ? A U 29 O2 ? ? ? 1_555 A A 32 N6 ? ? A U 1083 A A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog33 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 1087 A C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 1087 A C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 1087 A C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 1090 A U 1101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 1090 A U 1101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 1091 A C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 1091 A C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 1091 A C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 1092 A G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 1092 A G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 1092 A G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 39 N2 ? ? ? 1_555 A A 44 N7 ? ? A G 1093 A A 1098 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A G 39 N3 ? ? ? 1_555 A A 44 N6 ? ? A G 1093 A A 1098 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 1906 B C 1924 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 1906 B C 1924 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 1906 B C 1924 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 3 N1 ? ? ? 1_555 B U 19 O2 ? ? B G 1907 B U 1923 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? B G 3 O6 ? ? ? 1_555 B U 19 N3 ? ? B G 1907 B U 1923 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 1908 B G 1922 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 1908 B G 1922 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 1908 B G 1922 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 17 N1 ? ? B C 1909 B G 1921 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 17 O6 ? ? B C 1909 B G 1921 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 17 N2 ? ? B C 1909 B G 1921 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 1910 B C 1920 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 1910 B C 1920 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 1910 B C 1920 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B U 7 O2 ? ? ? 1_555 B A 15 N6 ? ? B U 1911 B A 1919 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog61 hydrog ? ? B A 14 N3 ? ? ? 1_555 B A 15 N6 ? ? B A 1918 B A 1919 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog62 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 17 N3 ? ? C G 1945 C C 1961 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 17 O2 ? ? C G 1945 C C 1961 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 17 N4 ? ? C G 1945 C C 1961 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C U 2 N3 ? ? ? 1_555 C A 16 N1 ? ? C U 1946 C A 1960 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C U 2 O4 ? ? ? 1_555 C A 16 N6 ? ? C U 1946 C A 1960 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 3 N3 ? ? ? 1_555 C G 15 N1 ? ? C C 1947 C G 1959 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 3 N4 ? ? ? 1_555 C G 15 O6 ? ? C C 1947 C G 1959 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C C 3 O2 ? ? ? 1_555 C G 15 N2 ? ? C C 1947 C G 1959 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 14 N3 ? ? C G 1948 C C 1958 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 14 O2 ? ? C G 1948 C C 1958 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 14 N4 ? ? C G 1948 C C 1958 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 13 N3 ? ? C G 1949 C C 1957 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 13 O2 ? ? C G 1949 C C 1957 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 13 N4 ? ? C G 1949 C C 1957 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 6 N2 ? ? ? 1_555 C U 12 O4 ? ? C G 1950 C U 1956 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog77 hydrog ? ? C G 10 N2 ? ? ? 1_555 C U 12 O2 ? ? C G 1954 C U 1956 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog78 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 13 N3 ? ? D G 2246 D C 2258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 13 O2 ? ? D G 2246 D C 2258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 13 N4 ? ? D G 2246 D C 2258 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? D A 2 N1 ? ? ? 1_555 D U 12 N3 ? ? D A 2247 D U 2257 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? D A 2 N6 ? ? ? 1_555 D U 12 O4 ? ? D A 2247 D U 2257 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? D C 3 N3 ? ? ? 1_555 D G 11 N1 ? ? D C 2248 D G 2256 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? D C 3 N4 ? ? ? 1_555 D G 11 O6 ? ? D C 2248 D G 2256 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? D C 3 O2 ? ? ? 1_555 D G 11 N2 ? ? D C 2248 D G 2256 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E G 1 N1 ? ? ? 1_555 E C 19 N3 ? ? E G 2588 E C 2606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E G 1 N2 ? ? ? 1_555 E C 19 O2 ? ? E G 2588 E C 2606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E G 1 O6 ? ? ? 1_555 E C 19 N4 ? ? E G 2588 E C 2606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E A 2 N1 ? ? ? 1_555 E U 18 N3 ? ? E A 2589 E U 2605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E A 2 N6 ? ? ? 1_555 E U 18 O4 ? ? E A 2589 E U 2605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E A 3 N1 ? ? ? 1_555 E U 17 N3 ? ? E A 2590 E U 2604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E A 3 N6 ? ? ? 1_555 E U 17 O4 ? ? E A 2590 E U 2604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E C 4 N3 ? ? ? 1_555 E G 16 N1 ? ? E C 2591 E G 2603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E C 4 N4 ? ? ? 1_555 E G 16 O6 ? ? E C 2591 E G 2603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? E C 4 O2 ? ? ? 1_555 E G 16 N2 ? ? E C 2591 E G 2603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? E G 5 N1 ? ? ? 1_555 E C 14 N3 ? ? E G 2592 E C 2601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? E G 5 N2 ? ? ? 1_555 E C 14 O2 ? ? E G 2592 E C 2601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? E G 5 O6 ? ? ? 1_555 E C 14 N4 ? ? E G 2592 E C 2601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? E U 6 N3 ? ? ? 1_555 E A 13 N1 ? ? E U 2593 E A 2600 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? E U 6 O4 ? ? ? 1_555 E A 13 N6 ? ? E U 2593 E A 2600 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? E C 7 N3 ? ? ? 1_555 E G 12 N1 ? ? E C 2594 E G 2599 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? E C 7 N4 ? ? ? 1_555 E G 12 O6 ? ? E C 2594 E G 2599 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? E C 7 O2 ? ? ? 1_555 E G 12 N2 ? ? E C 2594 E G 2599 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? E G 8 N2 ? ? ? 1_555 E A 11 N7 ? ? E G 2595 E A 2598 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog105 hydrog ? ? F C 1 N3 ? ? ? 1_555 F G 19 N1 ? ? F C 2651 F G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? F C 1 N4 ? ? ? 1_555 F G 19 O6 ? ? F C 2651 F G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? F C 1 O2 ? ? ? 1_555 F G 19 N2 ? ? F C 2651 F G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? F C 2 N3 ? ? ? 1_555 F G 18 N1 ? ? F C 2652 F G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? F C 2 N4 ? ? ? 1_555 F G 18 O6 ? ? F C 2652 F G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? F C 2 O2 ? ? ? 1_555 F G 18 N2 ? ? F C 2652 F G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? F U 3 O2 ? ? ? 1_555 F C 17 N4 ? ? F U 2653 F C 2667 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog112 hydrog ? ? F U 3 O2 ? ? ? 1_555 F G 18 N1 ? ? F U 2653 F G 2668 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog113 hydrog ? ? F A 4 N6 ? ? ? 1_555 F C 16 N3 ? ? F A 2654 F C 2666 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog114 hydrog ? ? F A 4 N7 ? ? ? 1_555 F C 16 N4 ? ? F A 2654 F C 2666 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog115 hydrog ? ? F G 5 N2 ? ? ? 1_555 F U 6 O4 ? ? F G 2655 F U 2656 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog116 hydrog ? ? F U 6 N3 ? ? ? 1_555 F A 15 N7 ? ? F U 2656 F A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog117 hydrog ? ? F U 6 O2 ? ? ? 1_555 F A 15 N6 ? ? F U 2656 F A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog118 hydrog ? ? F A 7 N6 ? ? ? 1_555 F G 14 N3 ? ? F A 2657 F G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog119 hydrog ? ? F A 7 N7 ? ? ? 1_555 F G 14 N2 ? ? F A 2657 F G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog120 hydrog ? ? F C 8 N3 ? ? ? 1_555 F G 13 N1 ? ? F C 2658 F G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? F C 8 N4 ? ? ? 1_555 F G 13 O6 ? ? F C 2658 F G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? F C 8 O2 ? ? ? 1_555 F G 13 N2 ? ? F C 2658 F G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? F G 9 N2 ? ? ? 1_555 F A 12 N7 ? ? F G 2659 F A 2662 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog124 hydrog ? ? H C 1 N3 ? ? ? 1_555 I G 19 N1 ? ? H C 1404 h G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? H C 1 N4 ? ? ? 1_555 I G 19 O6 ? ? H C 1404 h G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? H C 1 O2 ? ? ? 1_555 I G 19 N2 ? ? H C 1404 h G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? H G 2 N1 ? ? ? 1_555 I C 18 N3 ? ? H G 1405 h C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? H G 2 N2 ? ? ? 1_555 I C 18 O2 ? ? H G 1405 h C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? H G 2 O6 ? ? ? 1_555 I C 18 N4 ? ? H G 1405 h C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? H U 3 O4 ? ? ? 1_555 I U 17 N3 ? ? H U 1406 h U 1495 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog131 hydrog ? ? H C 4 N3 ? ? ? 1_555 I G 16 N1 ? ? H C 1407 h G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? H C 4 N4 ? ? ? 1_555 I G 16 O6 ? ? H C 1407 h G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? H C 4 O2 ? ? ? 1_555 I G 16 N2 ? ? H C 1407 h G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? H C 6 N4 ? ? ? 1_555 I G 13 O6 ? ? H C 1409 h G 1491 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog135 hydrog ? ? H A 7 N1 ? ? ? 1_555 I U 12 N3 ? ? H A 1410 h U 1490 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? H A 7 N6 ? ? ? 1_555 I U 12 O4 ? ? H A 1410 h U 1490 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? H C 8 N3 ? ? ? 1_555 I G 11 N1 ? ? H C 1411 h G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? H C 8 N4 ? ? ? 1_555 I G 11 O6 ? ? H C 1411 h G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? H C 8 O2 ? ? ? 1_555 I G 11 N2 ? ? H C 1411 h G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? H C 9 N3 ? ? ? 1_555 I G 10 N1 ? ? H C 1412 h G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? H C 9 N4 ? ? ? 1_555 I G 10 O6 ? ? H C 1412 h G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? H C 9 O2 ? ? ? 1_555 I G 10 N2 ? ? H C 1412 h G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? H A 10 N1 ? ? ? 1_555 I G 9 N1 ? ? H A 1413 h G 1487 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog144 hydrog ? ? H A 10 N6 ? ? ? 1_555 I G 9 O6 ? ? H A 1413 h G 1487 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog145 hydrog ? ? H U 11 N3 ? ? ? 1_555 I G 8 O6 ? ? H U 1414 h G 1486 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog146 hydrog ? ? H U 11 O2 ? ? ? 1_555 I G 8 N1 ? ? H U 1414 h G 1486 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog147 hydrog ? ? H G 12 N1 ? ? ? 1_555 I U 7 O2 ? ? H G 1415 h U 1485 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog148 hydrog ? ? H G 12 O6 ? ? ? 1_555 I U 7 N3 ? ? H G 1415 h U 1485 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog149 hydrog ? ? H G 13 N1 ? ? ? 1_555 I C 6 N3 ? ? H G 1416 h C 1484 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? H G 13 N2 ? ? ? 1_555 I C 6 O2 ? ? H G 1416 h C 1484 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? H G 13 O6 ? ? ? 1_555 I C 6 N4 ? ? H G 1416 h C 1484 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? H G 14 N2 ? ? ? 1_555 I A 5 N7 ? ? H G 1417 h A 1483 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog153 hydrog ? ? H G 14 N3 ? ? ? 1_555 I A 5 N6 ? ? H G 1417 h A 1483 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog154 hydrog ? ? H A 15 N6 ? ? ? 1_555 I G 4 N3 ? ? H A 1418 h G 1482 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog155 hydrog ? ? H A 15 N7 ? ? ? 1_555 I G 4 N2 ? ? H A 1418 h G 1482 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog156 hydrog ? ? H G 16 N1 ? ? ? 1_555 I U 3 O2 ? ? H G 1419 h U 1481 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog157 hydrog ? ? H G 16 O6 ? ? ? 1_555 I U 3 N3 ? ? H G 1419 h U 1481 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog158 hydrog ? ? H U 17 N3 ? ? ? 1_555 I A 2 N1 ? ? H U 1420 h A 1480 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? H U 17 O4 ? ? ? 1_555 I A 2 N6 ? ? H U 1420 h A 1480 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? H G 18 N1 ? ? ? 1_555 I C 1 N3 ? ? H G 1421 h C 1479 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL G 8 ? VAL G 12 ? VAL G 8 VAL G 12 A 2 ILE G 54 ? VAL G 60 ? ILE G 54 VAL G 60 A 3 PHE G 66 ? THR G 70 ? PHE G 66 THR G 70 B 1 GLY G 98 ? SER G 101 ? GLY G 98 SER G 101 B 2 LEU G 137 ? GLU G 140 ? LEU G 137 GLU G 140 C 1 LYS J 29 ? ARG J 30 ? LYS I 29 ARG I 30 C 2 LEU J 80 ? ILE J 81 ? LEU I 80 ILE I 81 D 1 VAL J 51 ? ARG J 55 ? VAL I 51 ARG I 55 D 2 GLU J 61 ? TYR J 65 ? GLU I 61 TYR I 65 E 1 LYS K 42 ? TYR K 45 ? LYS J 42 TYR J 45 E 2 ALA K 48 ? PRO K 51 ? ALA J 48 PRO J 51 F 1 ALA K 56 ? THR K 59 ? ALA J 56 THR J 59 F 2 THR K 65 ? SER K 70 ? THR J 65 SER J 70 F 3 ALA K 98 ? ASN K 102 ? ALA J 98 ASN J 102 F 4 PRO K 92 ? ASN K 94 ? PRO J 92 ASN J 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU G 10 ? N LEU G 10 O VAL G 56 ? O VAL G 56 A 2 3 N THR G 59 ? N THR G 59 O THR G 67 ? O THR G 67 B 1 2 N ILE G 100 ? N ILE G 100 O VAL G 138 ? O VAL G 138 C 1 2 N LYS J 29 ? N LYS I 29 O ILE J 81 ? O ILE I 81 D 1 2 N CYS J 52 ? N CYS I 52 O SER J 64 ? O SER I 64 E 1 2 N VAL K 43 ? N VAL J 43 O VAL K 50 ? O VAL J 50 F 1 2 N THR K 57 ? N THR J 57 O GLN K 69 ? O GLN J 69 F 2 3 N LEU K 66 ? N LEU J 66 O ILE K 101 ? O ILE J 101 F 3 4 O TYR K 100 ? O TYR J 100 N SER K 93 ? N SER J 93 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 H C 1412 ? ? OE1 I GLU 61 ? ? 0.97 2 1 OP1 h A 1492 ? ? O I THR 40 ? ? 1.09 3 1 OP1 A A 1067 ? ? NE2 J GLN 54 ? ? 1.33 4 1 "O3'" h U 1490 ? ? CB I PRO 90 ? ? 1.36 5 1 "C5'" h A 1492 ? ? OG1 I THR 40 ? ? 1.40 6 1 "C5'" h G 1491 ? ? CG I PRO 90 ? ? 1.53 7 1 N3 F A 2660 ? ? NE2 J GLN 69 ? ? 1.57 8 1 "C4'" h A 1492 ? ? OG1 I THR 40 ? ? 1.63 9 1 CE1 I HIS 76 ? ? NH2 J ARG 110 ? ? 1.64 10 1 OP1 H C 1412 ? ? CD I GLU 61 ? ? 1.81 11 1 OP1 h G 1491 ? ? NZ I LYS 42 ? ? 1.84 12 1 "C4'" h G 1491 ? ? CG I PRO 90 ? ? 1.86 13 1 "C5'" h G 1491 ? ? CD I PRO 90 ? ? 1.90 14 1 N1 F A 2660 ? ? OE1 J GLN 69 ? ? 1.91 15 1 C4 F A 2660 ? ? NE2 J GLN 69 ? ? 1.93 16 1 N3 F A 2660 ? ? CD J GLN 69 ? ? 1.95 17 1 OP1 h G 1491 ? ? CE I LYS 42 ? ? 1.96 18 1 C2 F A 2660 ? ? CD J GLN 69 ? ? 1.98 19 1 C2 F A 2660 ? ? OE1 J GLN 69 ? ? 1.99 20 1 P h A 1492 ? ? O I THR 40 ? ? 2.00 21 1 NE2 I HIS 76 ? ? NH2 J ARG 110 ? ? 2.01 22 1 OP1 h A 1492 ? ? C I THR 40 ? ? 2.04 23 1 "O2'" h U 1490 ? ? C I PRO 90 ? ? 2.07 24 1 "O4'" h G 1491 ? ? CG I PRO 90 ? ? 2.07 25 1 "O5'" h G 1491 ? ? CG I PRO 90 ? ? 2.09 26 1 "O2'" C G 1959 ? ? "O4'" H A 1418 ? ? 2.12 27 1 "O2'" h U 1490 ? ? N I GLY 91 ? ? 2.13 28 1 C6 F A 2660 ? ? OE1 J GLN 69 ? ? 2.15 29 1 N3 A U 1060 ? ? N7 A A 1088 ? ? 2.17 30 1 "O3'" h U 1490 ? ? CG I PRO 90 ? ? 2.17 31 1 P h G 1491 ? ? CB I PRO 90 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A U 1060 ? ? N3 A U 1060 ? ? 1.431 1.373 0.058 0.007 N 2 1 C5 A A 1086 ? ? C6 A A 1086 ? ? 1.247 1.406 -0.159 0.009 N 3 1 C5 A A 1086 ? ? N7 A A 1086 ? ? 1.344 1.388 -0.044 0.006 N 4 1 C6 A A 1088 ? ? N1 A A 1088 ? ? 1.278 1.351 -0.073 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A U 1060 ? ? C4 A U 1060 ? ? O4 A U 1060 ? ? 121.44 125.90 -4.46 0.60 N 2 1 C4 A A 1086 ? ? C5 A A 1086 ? ? C6 A A 1086 ? ? 120.46 117.00 3.46 0.50 N 3 1 C6 A A 1086 ? ? C5 A A 1086 ? ? N7 A A 1086 ? ? 127.48 132.30 -4.82 0.70 N 4 1 N1 A A 1088 ? ? C6 A A 1088 ? ? N6 A A 1088 ? ? 113.78 118.60 -4.82 0.60 N 5 1 C5 A A 1088 ? ? C6 A A 1088 ? ? N6 A A 1088 ? ? 128.65 123.70 4.95 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR G 7 ? ? 179.85 146.63 2 1 ALA G 14 ? ? -56.78 -75.11 3 1 MET G 16 ? ? 179.11 140.02 4 1 ASN G 18 ? ? 94.61 -13.21 5 1 VAL G 23 ? ? -113.35 -116.86 6 1 GLU G 49 ? ? 172.81 131.57 7 1 LYS G 71 ? ? -101.35 -167.95 8 1 ASN G 93 ? ? 70.16 -33.23 9 1 ARG I 8 ? ? -74.03 -74.18 10 1 PRO I 10 ? ? -55.10 -152.30 11 1 ARG I 13 ? ? -78.38 -132.66 12 1 LYS I 14 ? ? -179.82 99.10 13 1 VAL I 15 ? ? -56.52 97.08 14 1 ASN I 19 ? ? -58.12 84.72 15 1 VAL I 20 ? ? -175.46 112.86 16 1 ALA I 22 ? ? -77.32 46.85 17 1 LEU I 23 ? ? -59.17 -108.05 18 1 GLU I 24 ? ? 58.51 12.65 19 1 VAL I 32 ? ? -142.32 -25.61 20 1 CYS I 33 ? ? 74.49 107.10 21 1 THR I 38 ? ? -153.13 42.46 22 1 PRO I 41 ? ? -69.81 -171.06 23 1 LYS I 42 ? ? -71.29 -158.63 24 1 ALA I 47 ? ? 68.32 130.92 25 1 CYS I 52 ? ? -176.39 133.72 26 1 LEU I 56 ? ? -37.09 148.37 27 1 PHE I 60 ? ? -44.13 99.47 28 1 VAL I 62 ? ? 178.89 143.13 29 1 ILE I 66 ? ? -117.91 58.46 30 1 ASN I 72 ? ? -175.26 36.90 31 1 HIS I 76 ? ? -149.68 -13.74 32 1 ARG I 82 ? ? -122.56 -59.64 33 1 ARG I 85 ? ? -62.06 -176.71 34 1 LYS I 87 ? ? -67.93 -74.33 35 1 ASP I 88 ? ? -38.03 -32.15 36 1 LEU I 101 ? ? 54.31 -144.20 37 1 SER I 104 ? ? -118.63 -132.98 38 1 TYR I 116 ? ? 67.17 -174.35 39 1 ARG I 120 ? ? 50.53 101.06 40 1 PRO I 121 ? ? -57.81 -171.34 41 1 LYS I 122 ? ? -59.70 8.74 42 1 ARG J 32 ? ? -162.14 -5.17 43 1 HIS J 49 ? ? -108.61 77.22 44 1 PRO J 63 ? ? -101.88 47.63 45 1 ALA J 82 ? ? -132.07 -31.29 46 1 ARG J 84 ? ? -71.58 -119.63 47 1 SER J 86 ? ? -160.15 -66.25 48 1 ASP J 87 ? ? -166.95 -8.66 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CB _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id J _pdbx_validate_chiral.auth_comp_id ILE _pdbx_validate_chiral.auth_seq_id 103 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 1060 ? ? 0.151 'SIDE CHAIN' 2 1 A A 1086 ? ? 0.115 'SIDE CHAIN' 3 1 A A 1088 ? ? 0.135 'SIDE CHAIN' # _pdbx_entry_details.entry_id 3J0D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RIBOSOMAL RNA IS ONLY PARTIALLY MODELED IN THIS ENTRY: CHAINS A-F ARE PARTS OF THE 23S RIBOSOMAL RNA AND CHAINS H AND h ARE PARTS OF THE 16S RIBOSOMAL RNA. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J0D _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'REFINEMENT PROTOCOL--FLEXIBLE FITTING (MDFF)' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 2AVY ? ? 1 ? ? ? PDB 'experimental model' 2AVY 1 2 2AW4 ? ? 2 ? ? ? PDB 'experimental model' 2AW4 1 3 1EH1 ? ? 3 ? ? ? PDB 'experimental model' 1EH1 # _em_3d_reconstruction.entry_id 3J0D _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 153927 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method '3D PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 2.78 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 11.1 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name 'BUFFER R' _em_buffer.pH 7.5 _em_buffer.details 'BUFFER R' # _em_entity_assembly.id 1 _em_entity_assembly.name 'E. COLI POST TERMINATION COMPLEX' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details POTC-TTRRF _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3J0D _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2010-12-23 _em_imaging.temperature 93.00 _em_imaging.nominal_defocus_min 400.00 _em_imaging.nominal_defocus_max 4300.00 _em_imaging.tilt_angle_min 0.00 _em_imaging.tilt_angle_max 0.00 _em_imaging.nominal_cs ? _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 50310 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'QUANTIFOIL HOLEY CARBON FILM G' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J0D _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.cryogen_name ETHANE _em_vitrification.details VITROBOT _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J0D _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J0D _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 U OP3 O N N 479 U P P N N 480 U OP1 O N N 481 U OP2 O N N 482 U "O5'" O N N 483 U "C5'" C N N 484 U "C4'" C N R 485 U "O4'" O N N 486 U "C3'" C N S 487 U "O3'" O N N 488 U "C2'" C N R 489 U "O2'" O N N 490 U "C1'" C N R 491 U N1 N N N 492 U C2 C N N 493 U O2 O N N 494 U N3 N N N 495 U C4 C N N 496 U O4 O N N 497 U C5 C N N 498 U C6 C N N 499 U HOP3 H N N 500 U HOP2 H N N 501 U "H5'" H N N 502 U "H5''" H N N 503 U "H4'" H N N 504 U "H3'" H N N 505 U "HO3'" H N N 506 U "H2'" H N N 507 U "HO2'" H N N 508 U "H1'" H N N 509 U H3 H N N 510 U H5 H N N 511 U H6 H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF CORRECTION OF 3D MAPS BY WIENER FILTRATION' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image . _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 MDFF ? 'MODEL FITTING' ? ? 2 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.08 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3J0D 'double helix' 3J0D 'a-form double helix' 3J0D 'hairpin loop' 3J0D tetraloop 3J0D 'bulge loop' 3J0D 'mismatched base pair' 3J0D 'internal loop' 3J0D 'triple helix' 3J0D 'quadruple helix' # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 2AVY 2 'experimental model' PDB 2AW4 3 'experimental model' PDB 1EH1 # _atom_sites.entry_id 3J0D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_