HEADER VIRUS 21-JUL-11 3J0G TITLE HOMOLOGY MODEL OF E3 PROTEIN OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TITLE 2 TC-83 STRAIN FITTED WITH A CRYO-EM MAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 PROTEIN; COMPND 3 CHAIN: M, N, O, P; COMPND 4 FRAGMENT: UNP RESIDUES 276-334; COMPND 5 SYNONYM: SPIKE GLYCOPROTEIN E3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VENEZUELAN EQUINE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_COMMON: VEEV; SOURCE 4 ORGANISM_TAXID: 11037; SOURCE 5 STRAIN: TC-83; SOURCE 6 OTHER_DETAILS: PURIFIED FROM INFECTED BABY HAMSTER KIDNEY (BHK) SOURCE 7 CELLS KEYWDS ALPHAVIRUS, BIOWEAPON, VEEV, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR R.ZHANG,C.F.HRYC,W.CHIU REVDAT 4 26-JUL-23 3J0G 1 JRNL REMARK REVDAT 3 18-JUL-18 3J0G 1 REMARK REVDAT 2 17-JUL-13 3J0G 1 SCALE1 SCALE2 SCALE3 REVDAT 1 24-AUG-11 3J0G 0 JRNL AUTH R.ZHANG,C.F.HRYC,Y.CONG,X.LIU,J.JAKANA,R.GORCHAKOV, JRNL AUTH 2 M.L.BAKER,S.C.WEAVER,W.CHIU JRNL TITL 4.4 ANGSTROM CRYO-EM STRUCTURE OF AN ENVELOPED ALPHAVIRUS JRNL TITL 2 VENEZUELAN EQUINE ENCEPHALITIS VIRUS. JRNL REF EMBO J. V. 30 3854 2011 JRNL REFN ESSN 1460-2075 JRNL PMID 21829169 JRNL DOI 10.1038/EMBOJ.2011.261 REMARK 2 REMARK 2 RESOLUTION. 4.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, EMAN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3N40 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID-BODY FITTING DETAILS--THE E3 REMARK 3 HOMOLOGY MODEL WAS NOT FURTHER REFINED AGAINST THE CRYO-EM REMARK 3 DENSITY MAP DUE TO ITS LESS-RESOLVED QUALITY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.070 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.800 REMARK 3 NUMBER OF PARTICLES : 37000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: AFTER EACH ITERATION, THE NON-ICOSAHEDRAL PARTS REMARK 3 (WHICH INCLUDED THE LIPIDS AND THE RNA) IN THE RECONSTRUCTION REMARK 3 WERE REMOVED BY A SOFT-EDGED MASK DERIVED FROM AN ICOSAHEDRALLY REMARK 3 ORGANIZED, PROTEIN-ONLY MAP THAT WAS LOW-PASS FILTERED TO 30 REMARK 3 ANGSTROMS. THIS MAP THEN SERVED AS THE REFERENCE MODEL FOR THE REMARK 3 NEXT ITERATION. REMARK 4 REMARK 4 3J0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000160094. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VENEZUELAN EQUINE ENCEPHALITIS REMARK 245 VIRUS TC83 STRAIN E3 PROTEIN REMARK 245 THAT IS CLEAVED FROM P62 PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : TWO OF THE EIGHT GRIDS USED FOR REMARK 245 IMAGING CONTAINED CONTINUOUS REMARK 245 CARBON FILM UNDERNEATH THE REMARK 245 SAMPLES REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION CARRIED OUT IN REMARK 245 CHIU LAB, HOUSTON, TX REMARK 245 SAMPLE BUFFER : TEN BUFFER REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : THE VIRUS CONTAINS 240 COPIES REMARK 245 OF E1, E2, E3 AND CAPSID PROTEINS REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 09-APR-08 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 96.00 REMARK 245 MICROSCOPE MODEL : JEOL 3200FSC REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 4.30 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 100000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : OMEGA ENERGY FILTER REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 4 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 5 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.947214 -0.162460 0.276393 0.00000 REMARK 350 BIOMT2 6 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 6 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 7 -0.138197 -0.951057 0.276393 0.00000 REMARK 350 BIOMT2 7 0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 7 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 8 0.861803 -0.425325 0.276393 0.00000 REMARK 350 BIOMT2 8 0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 8 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 9 0.670820 0.688191 0.276393 0.00000 REMARK 350 BIOMT2 9 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 9 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 10 -0.447214 0.850651 0.276393 0.00000 REMARK 350 BIOMT2 10 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 10 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 11 -0.861803 -0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 11 -0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 11 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 12 0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 12 -0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 12 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 13 0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 13 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 13 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 14 0.447214 0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 14 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 14 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 15 -0.670820 0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 15 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 15 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 16 0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 16 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 17 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 19 -0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 20 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 21 0.052786 0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 21 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 21 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 22 -0.638197 0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 22 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 22 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 23 -0.447214 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 23 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 23 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 24 0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 24 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 24 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 25 0.670820 0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 25 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 25 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 26 -0.361803 0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 26 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 26 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 27 -0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 27 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 27 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 28 0.138197 -0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 28 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 28 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 29 0.447214 0.000000 -0.894427 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 30 0.138197 0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 30 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 30 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 31 -0.138197 -0.425325 0.894427 0.00000 REMARK 350 BIOMT2 31 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 31 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 32 0.361803 -0.262866 0.894427 0.00000 REMARK 350 BIOMT2 32 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 32 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 33 0.361803 0.262866 0.894427 0.00000 REMARK 350 BIOMT2 33 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 33 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 34 -0.138197 0.425325 0.894427 0.00000 REMARK 350 BIOMT2 34 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 34 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 35 -0.447214 0.000000 0.894427 0.00000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 36 0.447214 -0.525731 0.723607 0.00000 REMARK 350 BIOMT2 36 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 36 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 37 0.638197 0.262866 0.723607 0.00000 REMARK 350 BIOMT2 37 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 37 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 38 -0.052786 0.688191 0.723607 0.00000 REMARK 350 BIOMT2 38 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 38 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 39 -0.670820 0.162460 0.723607 0.00000 REMARK 350 BIOMT2 39 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 39 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 40 -0.361803 -0.587785 0.723607 0.00000 REMARK 350 BIOMT2 40 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 40 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 41 0.052786 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 41 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 41 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 42 0.670820 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 42 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 42 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 43 0.361803 0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 43 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 43 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 44 -0.447214 0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 44 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 44 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 45 -0.638197 -0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 45 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 45 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 46 -0.138197 0.951057 0.276393 0.00000 REMARK 350 BIOMT2 46 -0.425325 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 46 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 47 -0.947214 0.162460 0.276393 0.00000 REMARK 350 BIOMT2 47 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 47 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 48 -0.447214 -0.850651 0.276393 0.00000 REMARK 350 BIOMT2 48 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 48 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 49 0.670820 -0.688191 0.276393 0.00000 REMARK 350 BIOMT2 49 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 49 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 50 0.861803 0.425325 0.276393 0.00000 REMARK 350 BIOMT2 50 -0.425325 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 50 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 51 0.447214 -0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 51 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 51 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 52 0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 52 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 52 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 53 0.138197 0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 53 0.425325 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 53 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 54 -0.861803 0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 54 0.425325 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 54 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 55 -0.670820 -0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 55 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 55 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 56 -0.361803 0.587785 0.723607 0.00000 REMARK 350 BIOMT2 56 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 56 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 57 -0.670820 -0.162460 0.723607 0.00000 REMARK 350 BIOMT2 57 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 57 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 58 -0.052786 -0.688191 0.723607 0.00000 REMARK 350 BIOMT2 58 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 58 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 59 0.638197 -0.262866 0.723607 0.00000 REMARK 350 BIOMT2 59 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 59 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 60 0.447214 0.525731 0.723607 0.00000 REMARK 350 BIOMT2 60 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 60 -0.276393 0.850651 -0.447214 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO M 54 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO N 54 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO O 54 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO P 54 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA M 10 -155.39 64.48 REMARK 500 ALA N 10 -155.40 64.52 REMARK 500 ALA O 10 -155.39 64.56 REMARK 500 ALA P 10 -155.42 64.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5275 RELATED DB: EMDB REMARK 900 A CUBIC PORTION OF THE ORIGINAL 3D DENSITY MAP OF VEEV (COVERING REMARK 900 ONE ASYMMETRIC UNIT) REMARK 900 RELATED ID: EMD-5276 RELATED DB: EMDB REMARK 900 THE NON-ICOSAHEDRALLY AVERAGED CRYO-EM DENSITY MAPS OF VEEV REMARK 900 RELATED ID: 3J0C RELATED DB: PDB REMARK 900 STRUCTURE OF VEEV E1, E2, AND CAPSID DBREF 3J0G M 1 59 UNP P05674 POLS_EEVV8 276 334 DBREF 3J0G N 1 59 UNP P05674 POLS_EEVV8 276 334 DBREF 3J0G O 1 59 UNP P05674 POLS_EEVV8 276 334 DBREF 3J0G P 1 59 UNP P05674 POLS_EEVV8 276 334 SEQRES 1 M 59 SER LEU VAL THR THR MET CYS LEU LEU ALA ASN VAL THR SEQRES 2 M 59 PHE PRO CYS ALA GLN PRO PRO ILE CYS TYR ASP ARG LYS SEQRES 3 M 59 PRO ALA GLU THR LEU ALA MET LEU SER VAL ASN VAL ASP SEQRES 4 M 59 ASN PRO GLY TYR ASP GLU LEU LEU GLU ALA ALA VAL LYS SEQRES 5 M 59 CYS PRO GLY ARG LYS ARG ARG SEQRES 1 N 59 SER LEU VAL THR THR MET CYS LEU LEU ALA ASN VAL THR SEQRES 2 N 59 PHE PRO CYS ALA GLN PRO PRO ILE CYS TYR ASP ARG LYS SEQRES 3 N 59 PRO ALA GLU THR LEU ALA MET LEU SER VAL ASN VAL ASP SEQRES 4 N 59 ASN PRO GLY TYR ASP GLU LEU LEU GLU ALA ALA VAL LYS SEQRES 5 N 59 CYS PRO GLY ARG LYS ARG ARG SEQRES 1 O 59 SER LEU VAL THR THR MET CYS LEU LEU ALA ASN VAL THR SEQRES 2 O 59 PHE PRO CYS ALA GLN PRO PRO ILE CYS TYR ASP ARG LYS SEQRES 3 O 59 PRO ALA GLU THR LEU ALA MET LEU SER VAL ASN VAL ASP SEQRES 4 O 59 ASN PRO GLY TYR ASP GLU LEU LEU GLU ALA ALA VAL LYS SEQRES 5 O 59 CYS PRO GLY ARG LYS ARG ARG SEQRES 1 P 59 SER LEU VAL THR THR MET CYS LEU LEU ALA ASN VAL THR SEQRES 2 P 59 PHE PRO CYS ALA GLN PRO PRO ILE CYS TYR ASP ARG LYS SEQRES 3 P 59 PRO ALA GLU THR LEU ALA MET LEU SER VAL ASN VAL ASP SEQRES 4 P 59 ASN PRO GLY TYR ASP GLU LEU LEU GLU ALA ALA VAL LYS SEQRES 5 P 59 CYS PRO GLY ARG LYS ARG ARG HELIX 1 1 LYS M 26 ASN M 37 1 12 HELIX 2 2 GLY M 42 LYS M 52 1 11 HELIX 3 3 LYS N 26 ASN N 37 1 12 HELIX 4 4 GLY N 42 LYS N 52 1 11 HELIX 5 5 LYS O 26 ASN O 37 1 12 HELIX 6 6 GLY O 42 LYS O 52 1 11 HELIX 7 7 LYS P 26 ASN P 37 1 12 HELIX 8 8 GLY P 42 LYS P 52 1 11 SHEET 1 A 2 MET M 6 LEU M 9 0 SHEET 2 A 2 VAL M 12 PRO M 15 -1 O PHE M 14 N CYS M 7 SHEET 1 B 2 MET N 6 LEU N 9 0 SHEET 2 B 2 VAL N 12 PRO N 15 -1 O PHE N 14 N CYS N 7 SHEET 1 C 2 MET O 6 LEU O 9 0 SHEET 2 C 2 VAL O 12 PRO O 15 -1 O PHE O 14 N CYS O 7 SHEET 1 D 2 MET P 6 LEU P 9 0 SHEET 2 D 2 VAL P 12 PRO P 15 -1 O PHE P 14 N CYS P 7 SSBOND 1 CYS M 7 CYS M 16 1555 1555 2.03 SSBOND 2 CYS N 7 CYS N 16 1555 1555 2.03 SSBOND 3 CYS O 7 CYS O 16 1555 1555 2.03 SSBOND 4 CYS P 7 CYS P 16 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000