HEADER VIRUS 04-OCT-12 3J2J TITLE EMPTY COXSACKIEVIRUS A9 CAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 631-852; COMPND 5 SYNONYM: P1D, VIRION PROTEIN 1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN VP3; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 331-568; COMPND 10 SYNONYM: P1C, VIRION PROTEIN 3; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN VP2; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: UNP RESIDUES 79-330; COMPND 15 SYNONYM: P1B, VIRION PROTEIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9; SOURCE 3 ORGANISM_TAXID: 12067; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9; SOURCE 6 ORGANISM_TAXID: 12067; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9; SOURCE 9 ORGANISM_TAXID: 12067 KEYWDS CVA9-INTEGRIN, PICORNAVIRUS, ENTEROVIRUS, EMPTY CAPSID, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.SHAKEEL,J.J.T.SEITSONEN,T.KAJANDER,P.LAURINMAKI,T.HYYPIA,P.SUSI, AUTHOR 2 S.J.BUTCHER REVDAT 3 21-FEB-24 3J2J 1 REMARK SEQADV REVDAT 2 18-JUL-18 3J2J 1 REMARK REVDAT 1 17-JUL-13 3J2J 0 JRNL AUTH S.SHAKEEL,J.J.SEITSONEN,T.KAJANDER,P.LAURINMAKI,T.HYYPIA, JRNL AUTH 2 P.SUSI,S.J.BUTCHER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF COXSACKIEVIRUS A9 JRNL TITL 2 INTEGRIN {ALPHA}V{BETA}6 BINDING AND UNCOATING. JRNL REF J.VIROL. V. 87 3943 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23365426 JRNL DOI 10.1128/JVI.02989-12 REMARK 2 REMARK 2 RESOLUTION. 9.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : IMODFIT, AUTO3DEM REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1D4M REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE FITTING REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.260 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.540 REMARK 3 NUMBER OF PARTICLES : 1200 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3J2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000160169. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : EMPTY COXSACKIEVIRUS A9 CAPSID REMARK 245 IN COMPLEX WITH INTEGRIN ALPHA REMARK 245 V BETA 6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : MANUAL PLUNGING INTO LIQUID REMARK 245 ETHANE (GATAN CRYOPLUNGE 3) REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-FEB-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : NULL REMARK 245 MINIMUM DEFOCUS (NM) : 830.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4120.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 62000 REMARK 245 CALIBRATED MAGNIFICATION : 62000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA MET A 119 O PRO B 22 1.36 REMARK 500 O SER A 125 OG1 THR B 31 1.43 REMARK 500 O SER A 120 SG CYS B 23 1.58 REMARK 500 O LYS A 214 CB GLN B 59 1.64 REMARK 500 O PHE A 204 CG1 VAL C 128 1.64 REMARK 500 CB LYS A 214 NE2 GLN B 59 1.64 REMARK 500 CB MET A 119 O PRO B 22 1.66 REMARK 500 CG ARG A 118 OG SER B 21 1.72 REMARK 500 CA ALA B 124 NH1 ARG C 184 1.74 REMARK 500 CD ARG A 118 CB SER B 21 1.79 REMARK 500 CG ARG A 118 CB SER B 21 1.81 REMARK 500 CE MET A 119 CB ALA B 24 1.81 REMARK 500 CD1 ILE A 216 ND2 ASN B 56 1.82 REMARK 500 CD ARG A 118 OG SER B 21 1.86 REMARK 500 CA LYS A 214 NE2 GLN B 59 1.90 REMARK 500 CD LYS A 198 NE2 GLN B 238 1.91 REMARK 500 CG2 ILE A 124 CE2 PHE B 28 1.92 REMARK 500 N ILE A 216 CG1 VAL B 58 1.93 REMARK 500 NH2 ARG A 52 N SER B 33 1.99 REMARK 500 CD1 TRP A 186 O ILE B 36 2.00 REMARK 500 CB ILE A 216 CG1 VAL B 58 2.03 REMARK 500 NH1 ARG A 52 O PRO B 32 2.04 REMARK 500 NE1 TRP A 186 O ILE B 36 2.07 REMARK 500 NH2 ARG A 213 ND2 ASN B 57 2.07 REMARK 500 CG2 ILE A 124 CZ PHE B 28 2.13 REMARK 500 CA ILE A 216 CG1 VAL B 58 2.15 REMARK 500 CE MET A 119 N ALA B 24 2.15 REMARK 500 NE ARG A 213 ND2 ASN B 57 2.16 REMARK 500 CA THR A 1 O LYS B 41 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 2.16 -68.15 REMARK 500 GLN A 142 47.55 75.71 REMARK 500 VAL A 162 -91.88 -73.14 REMARK 500 SER A 163 64.06 -117.70 REMARK 500 VAL A 187 85.69 40.62 REMARK 500 ASP A 203 135.51 -32.75 REMARK 500 THR B 11 -5.04 74.69 REMARK 500 LEU B 25 71.62 -117.89 REMARK 500 ASN B 56 50.19 -93.87 REMARK 500 THR B 196 -94.35 -119.05 REMARK 500 MET B 224 82.65 61.52 REMARK 500 ALA C 20 -129.82 -95.12 REMARK 500 ASN C 21 -150.74 -102.95 REMARK 500 TYR C 26 54.93 -107.87 REMARK 500 THR C 39 -50.88 -123.57 REMARK 500 ASP C 48 -123.36 59.22 REMARK 500 CYS C 103 103.01 -162.47 REMARK 500 ALA C 105 -109.55 -132.27 REMARK 500 ASN C 139 86.60 -169.93 REMARK 500 ALA C 164 25.06 45.87 REMARK 500 ASN C 187 -4.03 -155.40 REMARK 500 ALA C 223 -141.55 -99.19 REMARK 500 THR C 228 -75.43 -109.21 REMARK 500 ARG C 247 -166.24 -170.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN C 186 -11.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5514 RELATED DB: EMDB DBREF 3J2J A 1 222 UNP P21404 POLG_CXA9 631 852 DBREF 3J2J B 1 238 UNP P21404 POLG_CXA9 331 568 DBREF 3J2J C 1 252 UNP P21404 POLG_CXA9 79 330 SEQADV 3J2J ASN A 22 UNP P21404 LYS 652 CONFLICT SEQADV 3J2J ASP A 23 UNP P21404 HIS 653 CONFLICT SEQADV 3J2J HIS A 80 UNP P21404 ARG 710 CONFLICT SEQADV 3J2J VAL C 101 UNP P21404 LEU 179 CONFLICT SEQRES 1 A 222 THR VAL GLU ASN PHE LEU GLY ARG SER ALA CYS VAL TYR SEQRES 2 A 222 MET GLU GLU TYR LYS THR THR ASP ASN ASP VAL ASN LYS SEQRES 3 A 222 LYS PHE VAL ALA TRP PRO ILE ASN THR LYS GLN MET VAL SEQRES 4 A 222 GLN MET ARG ARG LYS LEU GLU MET PHE THR TYR LEU ARG SEQRES 5 A 222 PHE ASP MET GLU VAL THR PHE VAL ILE THR SER ARG GLN SEQRES 6 A 222 ASP PRO GLY THR THR LEU ALA GLN ASP MET PRO VAL LEU SEQRES 7 A 222 THR HIS GLN ILE MET TYR VAL PRO PRO GLY GLY PRO ILE SEQRES 8 A 222 PRO ALA LYS VAL ASP ASP TYR ALA TRP GLN THR SER THR SEQRES 9 A 222 ASN PRO SER ILE PHE TRP THR GLU GLY ASN ALA PRO ALA SEQRES 10 A 222 ARG MET SER ILE PRO PHE ILE SER ILE GLY ASN ALA TYR SEQRES 11 A 222 SER ASN PHE TYR ASP GLY TRP SER ASN PHE ASP GLN ARG SEQRES 12 A 222 GLY SER TYR GLY TYR ASN THR LEU ASN ASN LEU GLY HIS SEQRES 13 A 222 ILE TYR VAL ARG HIS VAL SER GLY SER SER PRO HIS PRO SEQRES 14 A 222 ILE THR SER THR ILE ARG VAL TYR PHE LYS PRO LYS HIS SEQRES 15 A 222 THR ARG ALA TRP VAL PRO ARG PRO PRO ARG LEU CYS GLN SEQRES 16 A 222 TYR LYS LYS ALA PHE SER VAL ASP PHE THR PRO THR PRO SEQRES 17 A 222 ILE THR ASP THR ARG LYS ASP ILE ASN THR VAL THR THR SEQRES 18 A 222 VAL SEQRES 1 B 238 GLY LEU PRO THR MET ASN THR PRO GLY SER THR GLN PHE SEQRES 2 B 238 LEU THR SER ASP ASP PHE GLN SER PRO CYS ALA LEU PRO SEQRES 3 B 238 GLN PHE ASP VAL THR PRO SER MET ASN ILE PRO GLY GLU SEQRES 4 B 238 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 B 238 VAL PRO VAL ASN ASN VAL GLN ASP THR THR ASP GLN MET SEQRES 6 B 238 GLU MET PHE ARG ILE PRO VAL THR ILE ASN ALA PRO LEU SEQRES 7 B 238 GLN GLN GLN VAL PHE GLY LEU ARG LEU GLN PRO GLY LEU SEQRES 8 B 238 ASP SER VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 B 238 ASN TYR TYR ALA HIS TRP SER GLY SER MET LYS LEU THR SEQRES 10 B 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 B 238 LEU ILE ALA TYR SER PRO PRO GLY ALA ASN PRO PRO LYS SEQRES 12 B 238 THR ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 B 238 ASP ILE GLY LEU GLN SER SER CYS VAL LEU CYS VAL PRO SEQRES 14 B 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 B 238 GLU TYR THR SER ALA GLY TYR VAL THR CYS TRP TYR GLN SEQRES 16 B 238 THR GLY MET ILE VAL PRO PRO GLY THR PRO ASN SER SER SEQRES 17 B 238 SER ILE MET CYS PHE ALA SER ALA CYS ASN ASP PHE SER SEQRES 18 B 238 VAL ARG MET LEU ARG ASP THR PRO PHE ILE SER GLN ASP SEQRES 19 B 238 ASN LYS LEU GLN SEQRES 1 C 252 SER ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR SEQRES 2 C 252 ILE THR THR GLN GLU CYS ALA ASN VAL VAL VAL GLY TYR SEQRES 3 C 252 GLY ARG TRP PRO THR TYR LEU ARG ASP ASP GLU ALA THR SEQRES 4 C 252 ALA GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS SEQRES 5 C 252 ARG PHE TYR THR LEU ASP SER ILE LYS TRP GLU LYS GLY SEQRES 6 C 252 SER VAL GLY TRP TRP TRP LYS PHE PRO GLU ALA LEU SER SEQRES 7 C 252 ASP MET GLY LEU PHE GLY GLN ASN MET GLN TYR HIS TYR SEQRES 8 C 252 LEU GLY ARG ALA GLY TYR THR ILE HIS VAL GLN CYS ASN SEQRES 9 C 252 ALA SER LYS PHE HIS GLN GLY CYS LEU LEU VAL VAL CYS SEQRES 10 C 252 VAL PRO GLU ALA GLU MET GLY GLY ALA VAL VAL GLY GLN SEQRES 11 C 252 ALA PHE SER ALA THR ALA MET ALA ASN GLY ASP LYS ALA SEQRES 12 C 252 TYR GLU PHE THR SER ALA THR GLN SER ASP GLN THR LYS SEQRES 13 C 252 VAL GLN THR ALA ILE HIS ASN ALA GLY MET GLY VAL GLY SEQRES 14 C 252 VAL GLY ASN LEU THR ILE TYR PRO HIS GLN TRP ILE ASN SEQRES 15 C 252 LEU ARG THR ASN ASN SER ALA THR ILE VAL MET PRO TYR SEQRES 16 C 252 ILE ASN SER VAL PRO MET ASP ASN MET PHE ARG HIS TYR SEQRES 17 C 252 ASN PHE THR LEU MET VAL ILE PRO PHE VAL LYS LEU ASP SEQRES 18 C 252 TYR ALA ASP THR ALA SER THR TYR VAL PRO ILE THR VAL SEQRES 19 C 252 THR VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG SEQRES 20 C 252 LEU ALA GLN ALA GLN HELIX 1 1 THR A 1 GLY A 7 1 7 HELIX 2 2 ASP A 23 PHE A 28 5 6 HELIX 3 3 MET A 38 GLU A 46 1 9 HELIX 4 4 ASP A 97 THR A 102 5 6 HELIX 5 5 TYR A 148 ASN A 152 5 5 HELIX 6 6 LEU B 43 GLU B 48 1 6 HELIX 7 7 ASP B 63 ARG B 69 5 7 HELIX 8 8 THR B 98 ASN B 105 1 8 HELIX 9 9 THR B 144 MET B 149 1 6 HELIX 10 10 PRO C 47 THR C 51 5 5 HELIX 11 11 PRO C 74 SER C 78 5 5 HELIX 12 12 MET C 80 TYR C 89 1 10 HELIX 13 13 SER C 133 MET C 137 5 5 HELIX 14 14 ALA C 160 ALA C 164 5 5 HELIX 15 15 GLY C 169 TYR C 176 5 8 SHEET 1 A 4 ALA A 10 LYS A 18 0 SHEET 2 A 4 ILE A 170 PRO A 188 -1 O VAL A 176 N VAL A 12 SHEET 3 A 4 PHE A 48 GLN A 65 -1 N ARG A 64 O THR A 171 SHEET 4 A 4 ARG A 118 ILE A 121 -1 O ILE A 121 N MET A 55 SHEET 1 B 4 ALA A 10 LYS A 18 0 SHEET 2 B 4 ILE A 170 PRO A 188 -1 O VAL A 176 N VAL A 12 SHEET 3 B 4 PHE A 48 GLN A 65 -1 N ARG A 64 O THR A 171 SHEET 4 B 4 TYR A 130 SER A 131 -1 O TYR A 130 N LEU A 51 SHEET 1 C 4 VAL A 29 PRO A 32 0 SHEET 2 C 4 HIS A 156 HIS A 161 -1 O ILE A 157 N TRP A 31 SHEET 3 C 4 THR A 79 VAL A 85 -1 N MET A 83 O TYR A 158 SHEET 4 C 4 SER A 107 THR A 111 -1 O TRP A 110 N HIS A 80 SHEET 1 D 2 TRP A 137 ASN A 139 0 SHEET 2 D 2 ARG A 143 TYR A 146 -1 O ARG A 143 N ASN A 139 SHEET 1 E 3 SER B 51 VAL B 52 0 SHEET 2 E 3 SER B 207 ALA B 216 -1 O ALA B 214 N SER B 51 SHEET 3 E 3 ILE B 70 THR B 73 -1 N ILE B 70 O ILE B 210 SHEET 1 F 4 SER B 51 VAL B 52 0 SHEET 2 F 4 SER B 207 ALA B 216 -1 O ALA B 214 N SER B 51 SHEET 3 F 4 MET B 114 PHE B 120 -1 N THR B 117 O PHE B 213 SHEET 4 F 4 SER B 163 VAL B 168 -1 O CYS B 164 N PHE B 118 SHEET 1 G 4 GLN B 81 ARG B 86 0 SHEET 2 G 4 TYR B 189 TYR B 194 -1 O CYS B 192 N VAL B 82 SHEET 3 G 4 LYS B 129 SER B 135 -1 N SER B 135 O TYR B 189 SHEET 4 G 4 THR B 152 ASP B 157 -1 O THR B 152 N TYR B 134 SHEET 1 H 3 ARG B 177 LEU B 178 0 SHEET 2 H 3 TYR B 107 SER B 111 -1 N TRP B 110 O ARG B 177 SHEET 3 H 3 SER B 221 LEU B 225 -1 O SER B 221 N SER B 111 SHEET 1 I 2 ARG C 5 LEU C 9 0 SHEET 2 I 2 SER C 12 THR C 16 -1 O ILE C 14 N ILE C 7 SHEET 1 J 5 VAL C 23 VAL C 24 0 SHEET 2 J 5 SER C 188 MET C 193 1 O VAL C 192 N VAL C 23 SHEET 3 J 5 HIS C 90 GLN C 102 -1 N ILE C 99 O ILE C 191 SHEET 4 J 5 VAL C 230 LEU C 246 -1 O THR C 233 N GLN C 102 SHEET 5 J 5 TYR C 55 THR C 56 -1 N TYR C 55 O VAL C 236 SHEET 1 K 5 VAL C 23 VAL C 24 0 SHEET 2 K 5 SER C 188 MET C 193 1 O VAL C 192 N VAL C 23 SHEET 3 K 5 HIS C 90 GLN C 102 -1 N ILE C 99 O ILE C 191 SHEET 4 K 5 VAL C 230 LEU C 246 -1 O THR C 233 N GLN C 102 SHEET 5 K 5 ILE C 60 TRP C 62 -1 N TRP C 62 O VAL C 230 SHEET 1 L 5 TYR C 144 GLU C 145 0 SHEET 2 L 5 TRP C 69 PHE C 73 -1 N TRP C 70 O TYR C 144 SHEET 3 L 5 PHE C 210 ASP C 221 -1 O PHE C 210 N PHE C 73 SHEET 4 L 5 GLN C 110 PRO C 119 -1 N VAL C 118 O THR C 211 SHEET 5 L 5 HIS C 178 ASN C 182 -1 O GLN C 179 N VAL C 115 CISPEP 1 PHE C 73 PRO C 74 0 -0.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000