data_3J4P # _entry.id 3J4P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J4P pdb_00003j4p 10.2210/pdb3j4p/pdb RCSB RCSB160247 ? ? WWPDB D_1000160247 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-16 2 'Structure model' 1 1 2013-11-20 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2024-02-21 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Refinement description' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_software 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_conn_type 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' em_3d_fitting_list 24 5 'Structure model' pdbx_initial_refinement_model 25 5 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 3 'Structure model' '_em_software.name' 3 4 'Structure model' '_atom_site.Cartn_x' 4 4 'Structure model' '_atom_site.Cartn_y' 5 4 'Structure model' '_atom_site.Cartn_z' 6 4 'Structure model' '_atom_site.auth_asym_id' 7 4 'Structure model' '_atom_site.auth_atom_id' 8 4 'Structure model' '_atom_site.auth_comp_id' 9 4 'Structure model' '_atom_site.auth_seq_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.type_symbol' 13 4 'Structure model' '_chem_comp.formula' 14 4 'Structure model' '_chem_comp.formula_weight' 15 4 'Structure model' '_chem_comp.id' 16 4 'Structure model' '_chem_comp.mon_nstd_flag' 17 4 'Structure model' '_chem_comp.name' 18 4 'Structure model' '_chem_comp.type' 19 4 'Structure model' '_entity.formula_weight' 20 4 'Structure model' '_entity.pdbx_description' 21 4 'Structure model' '_entity.type' 22 5 'Structure model' '_chem_comp.pdbx_synonyms' 23 5 'Structure model' '_database_2.pdbx_DOI' 24 5 'Structure model' '_database_2.pdbx_database_accession' 25 5 'Structure model' '_em_3d_fitting_list.accession_code' 26 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 27 5 'Structure model' '_em_3d_fitting_list.source_name' 28 5 'Structure model' '_em_3d_fitting_list.type' 29 5 'Structure model' '_pdbx_struct_oper_list.name' 30 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 31 5 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J4P _pdbx_database_status.recvd_initial_deposition_date 2013-09-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-5681 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xie, Q.' 1 'Chapman, M.S.' 2 # _citation.id primary _citation.title 'Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 184 _citation.page_first 129 _citation.page_last 135 _citation.year 2013 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24036405 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2013.09.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xie, Q.' 1 ? primary 'Spilman, M.' 2 ? primary 'Meyer, N.L.' 3 ? primary 'Lerch, T.F.' 4 ? primary 'Stagg, S.M.' 5 ? primary 'Chapman, M.S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein VP1' 58577.531 1 ? ? 'SEE REMARK 999' ? 2 branched man '1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose' 982.803 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'sucrose octasulfate' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VGNSSGNWHCDSTWMGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQR LINNNWGFRPKRLSFKLFNIQVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYL TLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQTTGGTTNTQ TLGFSQGGPNTMANQAKNWLPGPCYRQQRVSKTSADNNNSEYSWTGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQSG VLIFGKQGSEKTNVDIEKVMITDEEEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIW AKIPHTDGHFHPSPLMGGFGLKHPPPQILIKNTPVPADPPTTFNQSKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEI QYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTRNL ; _entity_poly.pdbx_seq_one_letter_code_can ;VGNSSGNWHCDSTWMGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQR LINNNWGFRPKRLSFKLFNIQVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYL TLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQTTGGTTNTQ TLGFSQGGPNTMANQAKNWLPGPCYRQQRVSKTSADNNNSEYSWTGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQSG VLIFGKQGSEKTNVDIEKVMITDEEEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIW AKIPHTDGHFHPSPLMGGFGLKHPPPQILIKNTPVPADPPTTFNQSKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEI QYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTRNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLY n 1 3 ASN n 1 4 SER n 1 5 SER n 1 6 GLY n 1 7 ASN n 1 8 TRP n 1 9 HIS n 1 10 CYS n 1 11 ASP n 1 12 SER n 1 13 THR n 1 14 TRP n 1 15 MET n 1 16 GLY n 1 17 ASP n 1 18 ARG n 1 19 VAL n 1 20 ILE n 1 21 THR n 1 22 THR n 1 23 SER n 1 24 THR n 1 25 ARG n 1 26 THR n 1 27 TRP n 1 28 ALA n 1 29 LEU n 1 30 PRO n 1 31 THR n 1 32 TYR n 1 33 ASN n 1 34 ASN n 1 35 HIS n 1 36 LEU n 1 37 TYR n 1 38 LYS n 1 39 GLN n 1 40 ILE n 1 41 SER n 1 42 ASN n 1 43 SER n 1 44 THR n 1 45 SER n 1 46 GLY n 1 47 GLY n 1 48 SER n 1 49 SER n 1 50 ASN n 1 51 ASP n 1 52 ASN n 1 53 ALA n 1 54 TYR n 1 55 PHE n 1 56 GLY n 1 57 TYR n 1 58 SER n 1 59 THR n 1 60 PRO n 1 61 TRP n 1 62 GLY n 1 63 TYR n 1 64 PHE n 1 65 ASP n 1 66 PHE n 1 67 ASN n 1 68 ARG n 1 69 PHE n 1 70 HIS n 1 71 CYS n 1 72 HIS n 1 73 PHE n 1 74 SER n 1 75 PRO n 1 76 ARG n 1 77 ASP n 1 78 TRP n 1 79 GLN n 1 80 ARG n 1 81 LEU n 1 82 ILE n 1 83 ASN n 1 84 ASN n 1 85 ASN n 1 86 TRP n 1 87 GLY n 1 88 PHE n 1 89 ARG n 1 90 PRO n 1 91 LYS n 1 92 ARG n 1 93 LEU n 1 94 SER n 1 95 PHE n 1 96 LYS n 1 97 LEU n 1 98 PHE n 1 99 ASN n 1 100 ILE n 1 101 GLN n 1 102 VAL n 1 103 LYS n 1 104 GLU n 1 105 VAL n 1 106 THR n 1 107 GLN n 1 108 ASN n 1 109 GLU n 1 110 GLY n 1 111 THR n 1 112 LYS n 1 113 THR n 1 114 ILE n 1 115 ALA n 1 116 ASN n 1 117 ASN n 1 118 LEU n 1 119 THR n 1 120 SER n 1 121 THR n 1 122 ILE n 1 123 GLN n 1 124 VAL n 1 125 PHE n 1 126 THR n 1 127 ASP n 1 128 SER n 1 129 GLU n 1 130 TYR n 1 131 GLN n 1 132 LEU n 1 133 PRO n 1 134 TYR n 1 135 VAL n 1 136 LEU n 1 137 GLY n 1 138 SER n 1 139 ALA n 1 140 HIS n 1 141 GLN n 1 142 GLY n 1 143 CYS n 1 144 LEU n 1 145 PRO n 1 146 PRO n 1 147 PHE n 1 148 PRO n 1 149 ALA n 1 150 ASP n 1 151 VAL n 1 152 PHE n 1 153 MET n 1 154 ILE n 1 155 PRO n 1 156 GLN n 1 157 TYR n 1 158 GLY n 1 159 TYR n 1 160 LEU n 1 161 THR n 1 162 LEU n 1 163 ASN n 1 164 ASN n 1 165 GLY n 1 166 SER n 1 167 GLN n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 ARG n 1 172 SER n 1 173 SER n 1 174 PHE n 1 175 TYR n 1 176 CYS n 1 177 LEU n 1 178 GLU n 1 179 TYR n 1 180 PHE n 1 181 PRO n 1 182 SER n 1 183 GLN n 1 184 MET n 1 185 LEU n 1 186 ARG n 1 187 THR n 1 188 GLY n 1 189 ASN n 1 190 ASN n 1 191 PHE n 1 192 GLN n 1 193 PHE n 1 194 THR n 1 195 TYR n 1 196 THR n 1 197 PHE n 1 198 GLU n 1 199 ASP n 1 200 VAL n 1 201 PRO n 1 202 PHE n 1 203 HIS n 1 204 SER n 1 205 SER n 1 206 TYR n 1 207 ALA n 1 208 HIS n 1 209 SER n 1 210 GLN n 1 211 SER n 1 212 LEU n 1 213 ASP n 1 214 ARG n 1 215 LEU n 1 216 MET n 1 217 ASN n 1 218 PRO n 1 219 LEU n 1 220 ILE n 1 221 ASP n 1 222 GLN n 1 223 TYR n 1 224 LEU n 1 225 TYR n 1 226 TYR n 1 227 LEU n 1 228 SER n 1 229 ARG n 1 230 THR n 1 231 GLN n 1 232 THR n 1 233 THR n 1 234 GLY n 1 235 GLY n 1 236 THR n 1 237 THR n 1 238 ASN n 1 239 THR n 1 240 GLN n 1 241 THR n 1 242 LEU n 1 243 GLY n 1 244 PHE n 1 245 SER n 1 246 GLN n 1 247 GLY n 1 248 GLY n 1 249 PRO n 1 250 ASN n 1 251 THR n 1 252 MET n 1 253 ALA n 1 254 ASN n 1 255 GLN n 1 256 ALA n 1 257 LYS n 1 258 ASN n 1 259 TRP n 1 260 LEU n 1 261 PRO n 1 262 GLY n 1 263 PRO n 1 264 CYS n 1 265 TYR n 1 266 ARG n 1 267 GLN n 1 268 GLN n 1 269 ARG n 1 270 VAL n 1 271 SER n 1 272 LYS n 1 273 THR n 1 274 SER n 1 275 ALA n 1 276 ASP n 1 277 ASN n 1 278 ASN n 1 279 ASN n 1 280 SER n 1 281 GLU n 1 282 TYR n 1 283 SER n 1 284 TRP n 1 285 THR n 1 286 GLY n 1 287 ALA n 1 288 THR n 1 289 LYS n 1 290 TYR n 1 291 HIS n 1 292 LEU n 1 293 ASN n 1 294 GLY n 1 295 ARG n 1 296 ASP n 1 297 SER n 1 298 LEU n 1 299 VAL n 1 300 ASN n 1 301 PRO n 1 302 GLY n 1 303 PRO n 1 304 ALA n 1 305 MET n 1 306 ALA n 1 307 SER n 1 308 HIS n 1 309 LYS n 1 310 ASP n 1 311 ASP n 1 312 GLU n 1 313 GLU n 1 314 LYS n 1 315 PHE n 1 316 PHE n 1 317 PRO n 1 318 GLN n 1 319 SER n 1 320 GLY n 1 321 VAL n 1 322 LEU n 1 323 ILE n 1 324 PHE n 1 325 GLY n 1 326 LYS n 1 327 GLN n 1 328 GLY n 1 329 SER n 1 330 GLU n 1 331 LYS n 1 332 THR n 1 333 ASN n 1 334 VAL n 1 335 ASP n 1 336 ILE n 1 337 GLU n 1 338 LYS n 1 339 VAL n 1 340 MET n 1 341 ILE n 1 342 THR n 1 343 ASP n 1 344 GLU n 1 345 GLU n 1 346 GLU n 1 347 ILE n 1 348 ARG n 1 349 THR n 1 350 THR n 1 351 ASN n 1 352 PRO n 1 353 VAL n 1 354 ALA n 1 355 THR n 1 356 GLU n 1 357 GLN n 1 358 TYR n 1 359 GLY n 1 360 SER n 1 361 VAL n 1 362 SER n 1 363 THR n 1 364 ASN n 1 365 LEU n 1 366 GLN n 1 367 ARG n 1 368 GLY n 1 369 ASN n 1 370 ARG n 1 371 GLN n 1 372 ALA n 1 373 ALA n 1 374 THR n 1 375 ALA n 1 376 ASP n 1 377 VAL n 1 378 ASN n 1 379 THR n 1 380 GLN n 1 381 GLY n 1 382 VAL n 1 383 LEU n 1 384 PRO n 1 385 GLY n 1 386 MET n 1 387 VAL n 1 388 TRP n 1 389 GLN n 1 390 ASP n 1 391 ARG n 1 392 ASP n 1 393 VAL n 1 394 TYR n 1 395 LEU n 1 396 GLN n 1 397 GLY n 1 398 PRO n 1 399 ILE n 1 400 TRP n 1 401 ALA n 1 402 LYS n 1 403 ILE n 1 404 PRO n 1 405 HIS n 1 406 THR n 1 407 ASP n 1 408 GLY n 1 409 HIS n 1 410 PHE n 1 411 HIS n 1 412 PRO n 1 413 SER n 1 414 PRO n 1 415 LEU n 1 416 MET n 1 417 GLY n 1 418 GLY n 1 419 PHE n 1 420 GLY n 1 421 LEU n 1 422 LYS n 1 423 HIS n 1 424 PRO n 1 425 PRO n 1 426 PRO n 1 427 GLN n 1 428 ILE n 1 429 LEU n 1 430 ILE n 1 431 LYS n 1 432 ASN n 1 433 THR n 1 434 PRO n 1 435 VAL n 1 436 PRO n 1 437 ALA n 1 438 ASP n 1 439 PRO n 1 440 PRO n 1 441 THR n 1 442 THR n 1 443 PHE n 1 444 ASN n 1 445 GLN n 1 446 SER n 1 447 LYS n 1 448 LEU n 1 449 ASN n 1 450 SER n 1 451 PHE n 1 452 ILE n 1 453 THR n 1 454 GLN n 1 455 TYR n 1 456 SER n 1 457 THR n 1 458 GLY n 1 459 GLN n 1 460 VAL n 1 461 SER n 1 462 VAL n 1 463 GLU n 1 464 ILE n 1 465 GLU n 1 466 TRP n 1 467 GLU n 1 468 LEU n 1 469 GLN n 1 470 LYS n 1 471 GLU n 1 472 ASN n 1 473 SER n 1 474 LYS n 1 475 ARG n 1 476 TRP n 1 477 ASN n 1 478 PRO n 1 479 GLU n 1 480 ILE n 1 481 GLN n 1 482 TYR n 1 483 THR n 1 484 SER n 1 485 ASN n 1 486 TYR n 1 487 TYR n 1 488 LYS n 1 489 SER n 1 490 THR n 1 491 SER n 1 492 VAL n 1 493 ASP n 1 494 PHE n 1 495 ALA n 1 496 VAL n 1 497 ASN n 1 498 THR n 1 499 GLU n 1 500 GLY n 1 501 VAL n 1 502 TYR n 1 503 SER n 1 504 GLU n 1 505 PRO n 1 506 ARG n 1 507 PRO n 1 508 ILE n 1 509 GLY n 1 510 THR n 1 511 ARG n 1 512 TYR n 1 513 LEU n 1 514 THR n 1 515 ARG n 1 516 ASN n 1 517 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene cap _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Adeno-associated virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272636 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain sf9 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type baculovirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pAVDJ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;WURCS=2.0/2,2,1/[ha122h-2b_2-5_1*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O]/1-2/a2-b1 ; WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-Fruf1SO33SO34SO36SO3]{[(2+1)][a-D-Glcp2SO33SO34SO36SO3]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GU4 'D-saccharide, alpha linking' n 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose '2,3,4,6-tetra-O-sulfonato-alpha-D-glucose; 2,3,4,6-tetra-O-sulfonato-D-glucose; 2,3,4,6-tetra-O-sulfonato-glucose' 'C6 H12 O18 S4' 500.409 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YYJ 'D-saccharide, beta linking' n 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose ? 'C6 H12 O18 S4' 500.409 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GU4 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcp[2S,3S,4S,6S]a' GU4 'COMMON NAME' GMML 1.0 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose GU4 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp2SO33SO34SO36SO3 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 221 221 VAL VAL A . n A 1 2 GLY 2 222 222 GLY GLY A . n A 1 3 ASN 3 223 223 ASN ASN A . n A 1 4 SER 4 224 224 SER SER A . n A 1 5 SER 5 225 225 SER SER A . n A 1 6 GLY 6 226 226 GLY GLY A . n A 1 7 ASN 7 227 227 ASN ASN A . n A 1 8 TRP 8 228 228 TRP TRP A . n A 1 9 HIS 9 229 229 HIS HIS A . n A 1 10 CYS 10 230 230 CYS CYS A . n A 1 11 ASP 11 231 231 ASP ASP A . n A 1 12 SER 12 232 232 SER SER A . n A 1 13 THR 13 233 233 THR THR A . n A 1 14 TRP 14 234 234 TRP TRP A . n A 1 15 MET 15 235 235 MET MET A . n A 1 16 GLY 16 236 236 GLY GLY A . n A 1 17 ASP 17 237 237 ASP ASP A . n A 1 18 ARG 18 238 238 ARG ARG A . n A 1 19 VAL 19 239 239 VAL VAL A . n A 1 20 ILE 20 240 240 ILE ILE A . n A 1 21 THR 21 241 241 THR THR A . n A 1 22 THR 22 242 242 THR THR A . n A 1 23 SER 23 243 243 SER SER A . n A 1 24 THR 24 244 244 THR THR A . n A 1 25 ARG 25 245 245 ARG ARG A . n A 1 26 THR 26 246 246 THR THR A . n A 1 27 TRP 27 247 247 TRP TRP A . n A 1 28 ALA 28 248 248 ALA ALA A . n A 1 29 LEU 29 249 249 LEU LEU A . n A 1 30 PRO 30 250 250 PRO PRO A . n A 1 31 THR 31 251 251 THR THR A . n A 1 32 TYR 32 252 252 TYR TYR A . n A 1 33 ASN 33 253 253 ASN ASN A . n A 1 34 ASN 34 254 254 ASN ASN A . n A 1 35 HIS 35 255 255 HIS HIS A . n A 1 36 LEU 36 256 256 LEU LEU A . n A 1 37 TYR 37 257 257 TYR TYR A . n A 1 38 LYS 38 258 258 LYS LYS A . n A 1 39 GLN 39 259 259 GLN GLN A . n A 1 40 ILE 40 260 260 ILE ILE A . n A 1 41 SER 41 261 261 SER SER A . n A 1 42 ASN 42 262 262 ASN ASN A . n A 1 43 SER 43 263 263 SER SER A . n A 1 44 THR 44 264 264 THR THR A . n A 1 45 SER 45 265 265 SER SER A . n A 1 46 GLY 46 266 266 GLY GLY A . n A 1 47 GLY 47 267 267 GLY GLY A . n A 1 48 SER 48 268 268 SER SER A . n A 1 49 SER 49 269 269 SER SER A . n A 1 50 ASN 50 270 270 ASN ASN A . n A 1 51 ASP 51 271 271 ASP ASP A . n A 1 52 ASN 52 272 272 ASN ASN A . n A 1 53 ALA 53 273 273 ALA ALA A . n A 1 54 TYR 54 274 274 TYR TYR A . n A 1 55 PHE 55 275 275 PHE PHE A . n A 1 56 GLY 56 276 276 GLY GLY A . n A 1 57 TYR 57 277 277 TYR TYR A . n A 1 58 SER 58 278 278 SER SER A . n A 1 59 THR 59 279 279 THR THR A . n A 1 60 PRO 60 280 280 PRO PRO A . n A 1 61 TRP 61 281 281 TRP TRP A . n A 1 62 GLY 62 282 282 GLY GLY A . n A 1 63 TYR 63 283 283 TYR TYR A . n A 1 64 PHE 64 284 284 PHE PHE A . n A 1 65 ASP 65 285 285 ASP ASP A . n A 1 66 PHE 66 286 286 PHE PHE A . n A 1 67 ASN 67 287 287 ASN ASN A . n A 1 68 ARG 68 288 288 ARG ARG A . n A 1 69 PHE 69 289 289 PHE PHE A . n A 1 70 HIS 70 290 290 HIS HIS A . n A 1 71 CYS 71 291 291 CYS CYS A . n A 1 72 HIS 72 292 292 HIS HIS A . n A 1 73 PHE 73 293 293 PHE PHE A . n A 1 74 SER 74 294 294 SER SER A . n A 1 75 PRO 75 295 295 PRO PRO A . n A 1 76 ARG 76 296 296 ARG ARG A . n A 1 77 ASP 77 297 297 ASP ASP A . n A 1 78 TRP 78 298 298 TRP TRP A . n A 1 79 GLN 79 299 299 GLN GLN A . n A 1 80 ARG 80 300 300 ARG ARG A . n A 1 81 LEU 81 301 301 LEU LEU A . n A 1 82 ILE 82 302 302 ILE ILE A . n A 1 83 ASN 83 303 303 ASN ASN A . n A 1 84 ASN 84 304 304 ASN ASN A . n A 1 85 ASN 85 305 305 ASN ASN A . n A 1 86 TRP 86 306 306 TRP TRP A . n A 1 87 GLY 87 307 307 GLY GLY A . n A 1 88 PHE 88 308 308 PHE PHE A . n A 1 89 ARG 89 309 309 ARG ARG A . n A 1 90 PRO 90 310 310 PRO PRO A . n A 1 91 LYS 91 311 311 LYS LYS A . n A 1 92 ARG 92 312 312 ARG ARG A . n A 1 93 LEU 93 313 313 LEU LEU A . n A 1 94 SER 94 314 314 SER SER A . n A 1 95 PHE 95 315 315 PHE PHE A . n A 1 96 LYS 96 316 316 LYS LYS A . n A 1 97 LEU 97 317 317 LEU LEU A . n A 1 98 PHE 98 318 318 PHE PHE A . n A 1 99 ASN 99 319 319 ASN ASN A . n A 1 100 ILE 100 320 320 ILE ILE A . n A 1 101 GLN 101 321 321 GLN GLN A . n A 1 102 VAL 102 322 322 VAL VAL A . n A 1 103 LYS 103 323 323 LYS LYS A . n A 1 104 GLU 104 324 324 GLU GLU A . n A 1 105 VAL 105 325 325 VAL VAL A . n A 1 106 THR 106 326 326 THR THR A . n A 1 107 GLN 107 327 327 GLN GLN A . n A 1 108 ASN 108 328 328 ASN ASN A . n A 1 109 GLU 109 329 329 GLU GLU A . n A 1 110 GLY 110 330 330 GLY GLY A . n A 1 111 THR 111 331 331 THR THR A . n A 1 112 LYS 112 332 332 LYS LYS A . n A 1 113 THR 113 333 333 THR THR A . n A 1 114 ILE 114 334 334 ILE ILE A . n A 1 115 ALA 115 335 335 ALA ALA A . n A 1 116 ASN 116 336 336 ASN ASN A . n A 1 117 ASN 117 337 337 ASN ASN A . n A 1 118 LEU 118 338 338 LEU LEU A . n A 1 119 THR 119 339 339 THR THR A . n A 1 120 SER 120 340 340 SER SER A . n A 1 121 THR 121 341 341 THR THR A . n A 1 122 ILE 122 342 342 ILE ILE A . n A 1 123 GLN 123 343 343 GLN GLN A . n A 1 124 VAL 124 344 344 VAL VAL A . n A 1 125 PHE 125 345 345 PHE PHE A . n A 1 126 THR 126 346 346 THR THR A . n A 1 127 ASP 127 347 347 ASP ASP A . n A 1 128 SER 128 348 348 SER SER A . n A 1 129 GLU 129 349 349 GLU GLU A . n A 1 130 TYR 130 350 350 TYR TYR A . n A 1 131 GLN 131 351 351 GLN GLN A . n A 1 132 LEU 132 352 352 LEU LEU A . n A 1 133 PRO 133 353 353 PRO PRO A . n A 1 134 TYR 134 354 354 TYR TYR A . n A 1 135 VAL 135 355 355 VAL VAL A . n A 1 136 LEU 136 356 356 LEU LEU A . n A 1 137 GLY 137 357 357 GLY GLY A . n A 1 138 SER 138 358 358 SER SER A . n A 1 139 ALA 139 359 359 ALA ALA A . n A 1 140 HIS 140 360 360 HIS HIS A . n A 1 141 GLN 141 361 361 GLN GLN A . n A 1 142 GLY 142 362 362 GLY GLY A . n A 1 143 CYS 143 363 363 CYS CYS A . n A 1 144 LEU 144 364 364 LEU LEU A . n A 1 145 PRO 145 365 365 PRO PRO A . n A 1 146 PRO 146 366 366 PRO PRO A . n A 1 147 PHE 147 367 367 PHE PHE A . n A 1 148 PRO 148 368 368 PRO PRO A . n A 1 149 ALA 149 369 369 ALA ALA A . n A 1 150 ASP 150 370 370 ASP ASP A . n A 1 151 VAL 151 371 371 VAL VAL A . n A 1 152 PHE 152 372 372 PHE PHE A . n A 1 153 MET 153 373 373 MET MET A . n A 1 154 ILE 154 374 374 ILE ILE A . n A 1 155 PRO 155 375 375 PRO PRO A . n A 1 156 GLN 156 376 376 GLN GLN A . n A 1 157 TYR 157 377 377 TYR TYR A . n A 1 158 GLY 158 378 378 GLY GLY A . n A 1 159 TYR 159 379 379 TYR TYR A . n A 1 160 LEU 160 380 380 LEU LEU A . n A 1 161 THR 161 381 381 THR THR A . n A 1 162 LEU 162 382 382 LEU LEU A . n A 1 163 ASN 163 383 383 ASN ASN A . n A 1 164 ASN 164 384 384 ASN ASN A . n A 1 165 GLY 165 385 385 GLY GLY A . n A 1 166 SER 166 386 386 SER SER A . n A 1 167 GLN 167 387 387 GLN GLN A . n A 1 168 ALA 168 388 388 ALA ALA A . n A 1 169 VAL 169 389 389 VAL VAL A . n A 1 170 GLY 170 390 390 GLY GLY A . n A 1 171 ARG 171 391 391 ARG ARG A . n A 1 172 SER 172 392 392 SER SER A . n A 1 173 SER 173 393 393 SER SER A . n A 1 174 PHE 174 394 394 PHE PHE A . n A 1 175 TYR 175 395 395 TYR TYR A . n A 1 176 CYS 176 396 396 CYS CYS A . n A 1 177 LEU 177 397 397 LEU LEU A . n A 1 178 GLU 178 398 398 GLU GLU A . n A 1 179 TYR 179 399 399 TYR TYR A . n A 1 180 PHE 180 400 400 PHE PHE A . n A 1 181 PRO 181 401 401 PRO PRO A . n A 1 182 SER 182 402 402 SER SER A . n A 1 183 GLN 183 403 403 GLN GLN A . n A 1 184 MET 184 404 404 MET MET A . n A 1 185 LEU 185 405 405 LEU LEU A . n A 1 186 ARG 186 406 406 ARG ARG A . n A 1 187 THR 187 407 407 THR THR A . n A 1 188 GLY 188 408 408 GLY GLY A . n A 1 189 ASN 189 409 409 ASN ASN A . n A 1 190 ASN 190 410 410 ASN ASN A . n A 1 191 PHE 191 411 411 PHE PHE A . n A 1 192 GLN 192 412 412 GLN GLN A . n A 1 193 PHE 193 413 413 PHE PHE A . n A 1 194 THR 194 414 414 THR THR A . n A 1 195 TYR 195 415 415 TYR TYR A . n A 1 196 THR 196 416 416 THR THR A . n A 1 197 PHE 197 417 417 PHE PHE A . n A 1 198 GLU 198 418 418 GLU GLU A . n A 1 199 ASP 199 419 419 ASP ASP A . n A 1 200 VAL 200 420 420 VAL VAL A . n A 1 201 PRO 201 421 421 PRO PRO A . n A 1 202 PHE 202 422 422 PHE PHE A . n A 1 203 HIS 203 423 423 HIS HIS A . n A 1 204 SER 204 424 424 SER SER A . n A 1 205 SER 205 425 425 SER SER A . n A 1 206 TYR 206 426 426 TYR TYR A . n A 1 207 ALA 207 427 427 ALA ALA A . n A 1 208 HIS 208 428 428 HIS HIS A . n A 1 209 SER 209 429 429 SER SER A . n A 1 210 GLN 210 430 430 GLN GLN A . n A 1 211 SER 211 431 431 SER SER A . n A 1 212 LEU 212 432 432 LEU LEU A . n A 1 213 ASP 213 433 433 ASP ASP A . n A 1 214 ARG 214 434 434 ARG ARG A . n A 1 215 LEU 215 435 435 LEU LEU A . n A 1 216 MET 216 436 436 MET MET A . n A 1 217 ASN 217 437 437 ASN ASN A . n A 1 218 PRO 218 438 438 PRO PRO A . n A 1 219 LEU 219 439 439 LEU LEU A . n A 1 220 ILE 220 440 440 ILE ILE A . n A 1 221 ASP 221 441 441 ASP ASP A . n A 1 222 GLN 222 442 442 GLN GLN A . n A 1 223 TYR 223 443 443 TYR TYR A . n A 1 224 LEU 224 444 444 LEU LEU A . n A 1 225 TYR 225 445 445 TYR TYR A . n A 1 226 TYR 226 446 446 TYR TYR A . n A 1 227 LEU 227 447 447 LEU LEU A . n A 1 228 SER 228 448 448 SER SER A . n A 1 229 ARG 229 449 449 ARG ARG A . n A 1 230 THR 230 450 450 THR THR A . n A 1 231 GLN 231 451 451 GLN GLN A . n A 1 232 THR 232 452 452 THR THR A . n A 1 233 THR 233 453 453 THR THR A . n A 1 234 GLY 234 454 454 GLY GLY A . n A 1 235 GLY 235 455 455 GLY GLY A . n A 1 236 THR 236 456 456 THR THR A . n A 1 237 THR 237 457 457 THR THR A . n A 1 238 ASN 238 458 458 ASN ASN A . n A 1 239 THR 239 459 459 THR THR A . n A 1 240 GLN 240 460 460 GLN GLN A . n A 1 241 THR 241 461 461 THR THR A . n A 1 242 LEU 242 462 462 LEU LEU A . n A 1 243 GLY 243 463 463 GLY GLY A . n A 1 244 PHE 244 464 464 PHE PHE A . n A 1 245 SER 245 465 465 SER SER A . n A 1 246 GLN 246 466 466 GLN GLN A . n A 1 247 GLY 247 467 467 GLY GLY A . n A 1 248 GLY 248 468 468 GLY GLY A . n A 1 249 PRO 249 469 469 PRO PRO A . n A 1 250 ASN 250 470 470 ASN ASN A . n A 1 251 THR 251 471 471 THR THR A . n A 1 252 MET 252 472 472 MET MET A . n A 1 253 ALA 253 473 473 ALA ALA A . n A 1 254 ASN 254 474 474 ASN ASN A . n A 1 255 GLN 255 475 475 GLN GLN A . n A 1 256 ALA 256 476 476 ALA ALA A . n A 1 257 LYS 257 477 477 LYS LYS A . n A 1 258 ASN 258 478 478 ASN ASN A . n A 1 259 TRP 259 479 479 TRP TRP A . n A 1 260 LEU 260 480 480 LEU LEU A . n A 1 261 PRO 261 481 481 PRO PRO A . n A 1 262 GLY 262 482 482 GLY GLY A . n A 1 263 PRO 263 483 483 PRO PRO A . n A 1 264 CYS 264 484 484 CYS CYS A . n A 1 265 TYR 265 485 485 TYR TYR A . n A 1 266 ARG 266 486 486 ARG ARG A . n A 1 267 GLN 267 487 487 GLN GLN A . n A 1 268 GLN 268 488 488 GLN GLN A . n A 1 269 ARG 269 489 489 ARG ARG A . n A 1 270 VAL 270 490 490 VAL VAL A . n A 1 271 SER 271 491 491 SER SER A . n A 1 272 LYS 272 492 492 LYS LYS A . n A 1 273 THR 273 493 493 THR THR A . n A 1 274 SER 274 494 494 SER SER A . n A 1 275 ALA 275 495 495 ALA ALA A . n A 1 276 ASP 276 496 496 ASP ASP A . n A 1 277 ASN 277 497 497 ASN ASN A . n A 1 278 ASN 278 498 498 ASN ASN A . n A 1 279 ASN 279 499 499 ASN ASN A . n A 1 280 SER 280 500 500 SER SER A . n A 1 281 GLU 281 501 501 GLU GLU A . n A 1 282 TYR 282 502 502 TYR TYR A . n A 1 283 SER 283 503 503 SER SER A . n A 1 284 TRP 284 504 504 TRP TRP A . n A 1 285 THR 285 505 505 THR THR A . n A 1 286 GLY 286 506 506 GLY GLY A . n A 1 287 ALA 287 507 507 ALA ALA A . n A 1 288 THR 288 508 508 THR THR A . n A 1 289 LYS 289 509 509 LYS LYS A . n A 1 290 TYR 290 510 510 TYR TYR A . n A 1 291 HIS 291 511 511 HIS HIS A . n A 1 292 LEU 292 512 512 LEU LEU A . n A 1 293 ASN 293 513 513 ASN ASN A . n A 1 294 GLY 294 514 514 GLY GLY A . n A 1 295 ARG 295 515 515 ARG ARG A . n A 1 296 ASP 296 516 516 ASP ASP A . n A 1 297 SER 297 517 517 SER SER A . n A 1 298 LEU 298 518 518 LEU LEU A . n A 1 299 VAL 299 519 519 VAL VAL A . n A 1 300 ASN 300 520 520 ASN ASN A . n A 1 301 PRO 301 521 521 PRO PRO A . n A 1 302 GLY 302 522 522 GLY GLY A . n A 1 303 PRO 303 523 523 PRO PRO A . n A 1 304 ALA 304 524 524 ALA ALA A . n A 1 305 MET 305 525 525 MET MET A . n A 1 306 ALA 306 526 526 ALA ALA A . n A 1 307 SER 307 527 527 SER SER A . n A 1 308 HIS 308 528 528 HIS HIS A . n A 1 309 LYS 309 529 529 LYS LYS A . n A 1 310 ASP 310 530 530 ASP ASP A . n A 1 311 ASP 311 531 531 ASP ASP A . n A 1 312 GLU 312 532 532 GLU GLU A . n A 1 313 GLU 313 533 533 GLU GLU A . n A 1 314 LYS 314 534 534 LYS LYS A . n A 1 315 PHE 315 535 535 PHE PHE A . n A 1 316 PHE 316 536 536 PHE PHE A . n A 1 317 PRO 317 537 537 PRO PRO A . n A 1 318 GLN 318 538 538 GLN GLN A . n A 1 319 SER 319 539 539 SER SER A . n A 1 320 GLY 320 540 540 GLY GLY A . n A 1 321 VAL 321 541 541 VAL VAL A . n A 1 322 LEU 322 542 542 LEU LEU A . n A 1 323 ILE 323 543 543 ILE ILE A . n A 1 324 PHE 324 544 544 PHE PHE A . n A 1 325 GLY 325 545 545 GLY GLY A . n A 1 326 LYS 326 546 546 LYS LYS A . n A 1 327 GLN 327 547 547 GLN GLN A . n A 1 328 GLY 328 548 548 GLY GLY A . n A 1 329 SER 329 549 549 SER SER A . n A 1 330 GLU 330 550 550 GLU GLU A . n A 1 331 LYS 331 551 551 LYS LYS A . n A 1 332 THR 332 552 552 THR THR A . n A 1 333 ASN 333 553 553 ASN ASN A . n A 1 334 VAL 334 554 554 VAL VAL A . n A 1 335 ASP 335 555 555 ASP ASP A . n A 1 336 ILE 336 556 556 ILE ILE A . n A 1 337 GLU 337 557 557 GLU GLU A . n A 1 338 LYS 338 558 558 LYS LYS A . n A 1 339 VAL 339 559 559 VAL VAL A . n A 1 340 MET 340 560 560 MET MET A . n A 1 341 ILE 341 561 561 ILE ILE A . n A 1 342 THR 342 562 562 THR THR A . n A 1 343 ASP 343 563 563 ASP ASP A . n A 1 344 GLU 344 564 564 GLU GLU A . n A 1 345 GLU 345 565 565 GLU GLU A . n A 1 346 GLU 346 566 566 GLU GLU A . n A 1 347 ILE 347 567 567 ILE ILE A . n A 1 348 ARG 348 568 568 ARG ARG A . n A 1 349 THR 349 569 569 THR THR A . n A 1 350 THR 350 570 570 THR THR A . n A 1 351 ASN 351 571 571 ASN ASN A . n A 1 352 PRO 352 572 572 PRO PRO A . n A 1 353 VAL 353 573 573 VAL VAL A . n A 1 354 ALA 354 574 574 ALA ALA A . n A 1 355 THR 355 575 575 THR THR A . n A 1 356 GLU 356 576 576 GLU GLU A . n A 1 357 GLN 357 577 577 GLN GLN A . n A 1 358 TYR 358 578 578 TYR TYR A . n A 1 359 GLY 359 579 579 GLY GLY A . n A 1 360 SER 360 580 580 SER SER A . n A 1 361 VAL 361 581 581 VAL VAL A . n A 1 362 SER 362 582 582 SER SER A . n A 1 363 THR 363 583 583 THR THR A . n A 1 364 ASN 364 584 584 ASN ASN A . n A 1 365 LEU 365 585 585 LEU LEU A . n A 1 366 GLN 366 586 586 GLN GLN A . n A 1 367 ARG 367 587 587 ARG ARG A . n A 1 368 GLY 368 588 588 GLY GLY A . n A 1 369 ASN 369 589 589 ASN ASN A . n A 1 370 ARG 370 590 590 ARG ARG A . n A 1 371 GLN 371 591 591 GLN GLN A . n A 1 372 ALA 372 592 592 ALA ALA A . n A 1 373 ALA 373 593 593 ALA ALA A . n A 1 374 THR 374 594 594 THR THR A . n A 1 375 ALA 375 595 595 ALA ALA A . n A 1 376 ASP 376 596 596 ASP ASP A . n A 1 377 VAL 377 597 597 VAL VAL A . n A 1 378 ASN 378 598 598 ASN ASN A . n A 1 379 THR 379 599 599 THR THR A . n A 1 380 GLN 380 600 600 GLN GLN A . n A 1 381 GLY 381 601 601 GLY GLY A . n A 1 382 VAL 382 602 602 VAL VAL A . n A 1 383 LEU 383 603 603 LEU LEU A . n A 1 384 PRO 384 604 604 PRO PRO A . n A 1 385 GLY 385 605 605 GLY GLY A . n A 1 386 MET 386 606 606 MET MET A . n A 1 387 VAL 387 607 607 VAL VAL A . n A 1 388 TRP 388 608 608 TRP TRP A . n A 1 389 GLN 389 609 609 GLN GLN A . n A 1 390 ASP 390 610 610 ASP ASP A . n A 1 391 ARG 391 611 611 ARG ARG A . n A 1 392 ASP 392 612 612 ASP ASP A . n A 1 393 VAL 393 613 613 VAL VAL A . n A 1 394 TYR 394 614 614 TYR TYR A . n A 1 395 LEU 395 615 615 LEU LEU A . n A 1 396 GLN 396 616 616 GLN GLN A . n A 1 397 GLY 397 617 617 GLY GLY A . n A 1 398 PRO 398 618 618 PRO PRO A . n A 1 399 ILE 399 619 619 ILE ILE A . n A 1 400 TRP 400 620 620 TRP TRP A . n A 1 401 ALA 401 621 621 ALA ALA A . n A 1 402 LYS 402 622 622 LYS LYS A . n A 1 403 ILE 403 623 623 ILE ILE A . n A 1 404 PRO 404 624 624 PRO PRO A . n A 1 405 HIS 405 625 625 HIS HIS A . n A 1 406 THR 406 626 626 THR THR A . n A 1 407 ASP 407 627 627 ASP ASP A . n A 1 408 GLY 408 628 628 GLY GLY A . n A 1 409 HIS 409 629 629 HIS HIS A . n A 1 410 PHE 410 630 630 PHE PHE A . n A 1 411 HIS 411 631 631 HIS HIS A . n A 1 412 PRO 412 632 632 PRO PRO A . n A 1 413 SER 413 633 633 SER SER A . n A 1 414 PRO 414 634 634 PRO PRO A . n A 1 415 LEU 415 635 635 LEU LEU A . n A 1 416 MET 416 636 636 MET MET A . n A 1 417 GLY 417 637 637 GLY GLY A . n A 1 418 GLY 418 638 638 GLY GLY A . n A 1 419 PHE 419 639 639 PHE PHE A . n A 1 420 GLY 420 640 640 GLY GLY A . n A 1 421 LEU 421 641 641 LEU LEU A . n A 1 422 LYS 422 642 642 LYS LYS A . n A 1 423 HIS 423 643 643 HIS HIS A . n A 1 424 PRO 424 644 644 PRO PRO A . n A 1 425 PRO 425 645 645 PRO PRO A . n A 1 426 PRO 426 646 646 PRO PRO A . n A 1 427 GLN 427 647 647 GLN GLN A . n A 1 428 ILE 428 648 648 ILE ILE A . n A 1 429 LEU 429 649 649 LEU LEU A . n A 1 430 ILE 430 650 650 ILE ILE A . n A 1 431 LYS 431 651 651 LYS LYS A . n A 1 432 ASN 432 652 652 ASN ASN A . n A 1 433 THR 433 653 653 THR THR A . n A 1 434 PRO 434 654 654 PRO PRO A . n A 1 435 VAL 435 655 655 VAL VAL A . n A 1 436 PRO 436 656 656 PRO PRO A . n A 1 437 ALA 437 657 657 ALA ALA A . n A 1 438 ASP 438 658 658 ASP ASP A . n A 1 439 PRO 439 659 659 PRO PRO A . n A 1 440 PRO 440 660 660 PRO PRO A . n A 1 441 THR 441 661 661 THR THR A . n A 1 442 THR 442 662 662 THR THR A . n A 1 443 PHE 443 663 663 PHE PHE A . n A 1 444 ASN 444 664 664 ASN ASN A . n A 1 445 GLN 445 665 665 GLN GLN A . n A 1 446 SER 446 666 666 SER SER A . n A 1 447 LYS 447 667 667 LYS LYS A . n A 1 448 LEU 448 668 668 LEU LEU A . n A 1 449 ASN 449 669 669 ASN ASN A . n A 1 450 SER 450 670 670 SER SER A . n A 1 451 PHE 451 671 671 PHE PHE A . n A 1 452 ILE 452 672 672 ILE ILE A . n A 1 453 THR 453 673 673 THR THR A . n A 1 454 GLN 454 674 674 GLN GLN A . n A 1 455 TYR 455 675 675 TYR TYR A . n A 1 456 SER 456 676 676 SER SER A . n A 1 457 THR 457 677 677 THR THR A . n A 1 458 GLY 458 678 678 GLY GLY A . n A 1 459 GLN 459 679 679 GLN GLN A . n A 1 460 VAL 460 680 680 VAL VAL A . n A 1 461 SER 461 681 681 SER SER A . n A 1 462 VAL 462 682 682 VAL VAL A . n A 1 463 GLU 463 683 683 GLU GLU A . n A 1 464 ILE 464 684 684 ILE ILE A . n A 1 465 GLU 465 685 685 GLU GLU A . n A 1 466 TRP 466 686 686 TRP TRP A . n A 1 467 GLU 467 687 687 GLU GLU A . n A 1 468 LEU 468 688 688 LEU LEU A . n A 1 469 GLN 469 689 689 GLN GLN A . n A 1 470 LYS 470 690 690 LYS LYS A . n A 1 471 GLU 471 691 691 GLU GLU A . n A 1 472 ASN 472 692 692 ASN ASN A . n A 1 473 SER 473 693 693 SER SER A . n A 1 474 LYS 474 694 694 LYS LYS A . n A 1 475 ARG 475 695 695 ARG ARG A . n A 1 476 TRP 476 696 696 TRP TRP A . n A 1 477 ASN 477 697 697 ASN ASN A . n A 1 478 PRO 478 698 698 PRO PRO A . n A 1 479 GLU 479 699 699 GLU GLU A . n A 1 480 ILE 480 700 700 ILE ILE A . n A 1 481 GLN 481 701 701 GLN GLN A . n A 1 482 TYR 482 702 702 TYR TYR A . n A 1 483 THR 483 703 703 THR THR A . n A 1 484 SER 484 704 704 SER SER A . n A 1 485 ASN 485 705 705 ASN ASN A . n A 1 486 TYR 486 706 706 TYR TYR A . n A 1 487 TYR 487 707 707 TYR TYR A . n A 1 488 LYS 488 708 708 LYS LYS A . n A 1 489 SER 489 709 709 SER SER A . n A 1 490 THR 490 710 710 THR THR A . n A 1 491 SER 491 711 711 SER SER A . n A 1 492 VAL 492 712 712 VAL VAL A . n A 1 493 ASP 493 713 713 ASP ASP A . n A 1 494 PHE 494 714 714 PHE PHE A . n A 1 495 ALA 495 715 715 ALA ALA A . n A 1 496 VAL 496 716 716 VAL VAL A . n A 1 497 ASN 497 717 717 ASN ASN A . n A 1 498 THR 498 718 718 THR THR A . n A 1 499 GLU 499 719 719 GLU GLU A . n A 1 500 GLY 500 720 720 GLY GLY A . n A 1 501 VAL 501 721 721 VAL VAL A . n A 1 502 TYR 502 722 722 TYR TYR A . n A 1 503 SER 503 723 723 SER SER A . n A 1 504 GLU 504 724 724 GLU GLU A . n A 1 505 PRO 505 725 725 PRO PRO A . n A 1 506 ARG 506 726 726 ARG ARG A . n A 1 507 PRO 507 727 727 PRO PRO A . n A 1 508 ILE 508 728 728 ILE ILE A . n A 1 509 GLY 509 729 729 GLY GLY A . n A 1 510 THR 510 730 730 THR THR A . n A 1 511 ARG 511 731 731 ARG ARG A . n A 1 512 TYR 512 732 732 TYR TYR A . n A 1 513 LEU 513 733 733 LEU LEU A . n A 1 514 THR 514 734 734 THR THR A . n A 1 515 ARG 515 735 735 ARG ARG A . n A 1 516 ASN 516 736 736 ASN ASN A . n A 1 517 LEU 517 737 737 LEU LEU A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GU4 1 B GU4 1 A SCR 1 n B 2 YYJ 2 B YYJ 2 A SCR 1 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 802 2 NA NA A . D 4 MG 1 803 3 MG MG A . E 5 HOH 1 901 4 HOH HOH A . # _cell.entry_id 3J4P _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J4P _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3J4P _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 3J4P _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 4.80 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4137 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 4195 _refine_hist.d_res_high 4.80 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J4P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J4P _struct.title 'Electron Microscopy Analysis of a Disaccharide Analog complex Reveals Receptor Interactions of Adeno-Associated Virus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J4P _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'Virus cell-receptor interaction, VIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3J4P _struct_ref.pdbx_db_accession 3J4P _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VGNSSGNWHCDSTWMGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQR LINNNWGFRPKRLSFKLFNIQVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYL TLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQTTGGTTNTQ TLGFSQGGPNTMANQAKNWLPGPCYRQQRVSKTSADNNNSEYSWTGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQSG VLIFGKQGSEKTNVDIEKVMITDEEEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIW AKIPHTDGHFHPSPLMGGFGLKHPPPQILIKNTPVPADPPTTFNQSKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEI QYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTRNL ; _struct_ref.pdbx_align_begin 221 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3J4P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 517 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3J4P _struct_ref_seq.db_align_beg 221 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 737 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 221 _struct_ref_seq.pdbx_auth_seq_align_end 737 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D,E 2 1 A,B,C,D,E 3 '(1-5)' A,B,C,D,E 4 '(1,2,6,10,23,24)' A,B,C,D,E 5 P A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 1.00000000 0.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 3 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 10 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 13 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 14 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 15 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 18 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 19 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 23 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 28 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 29 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 30 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 38 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 39 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 40 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 44 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 45 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 55 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 60 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 74 ? ASN A 84 ? SER A 294 ASN A 304 1 ? 11 HELX_P HELX_P2 2 CYS A 176 ? PHE A 180 ? CYS A 396 PHE A 400 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GU4 . C1 ? ? ? 1_555 B YYJ . O2 ? ? B GU4 1 B YYJ 2 1_555 ? ? ? ? ? ? ? 1.404 sing ? metalc1 metalc ? ? C NA . NA ? ? ? 1_555 B GU4 . O27 ? ? A NA 802 B GU4 1 1_555 ? ? ? ? ? ? ? 2.976 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 300 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 520 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 301 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 521 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.38 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 3 ? D ? 5 ? E ? 5 ? F ? 3 ? G ? 5 ? H ? 2 ? I ? 2 ? J ? 2 ? K ? 2 ? L ? 2 ? M ? 2 ? N ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel G 4 5 ? anti-parallel H 1 2 ? parallel I 1 2 ? anti-parallel J 1 2 ? parallel K 1 2 ? anti-parallel L 1 2 ? anti-parallel M 1 2 ? anti-parallel N 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 152 ? MET A 153 ? PHE A 372 MET A 373 A 2 ARG A 25 ? LEU A 29 ? ARG A 245 LEU A 249 A 3 GLN A 454 ? SER A 461 ? GLN A 674 SER A 681 A 4 ASN A 85 ? PHE A 98 ? ASN A 305 PHE A 318 A 5 GLU A 463 ? LYS A 470 ? GLU A 683 LYS A 690 A 6 THR A 21 ? THR A 22 ? THR A 241 THR A 242 B 1 THR A 21 ? THR A 22 ? THR A 241 THR A 242 B 2 GLU A 463 ? LYS A 470 ? GLU A 683 LYS A 690 B 3 ASN A 85 ? PHE A 98 ? ASN A 305 PHE A 318 B 4 PHE A 191 ? THR A 196 ? PHE A 411 THR A 416 C 1 PHE A 191 ? THR A 196 ? PHE A 411 THR A 416 C 2 ASN A 85 ? PHE A 98 ? ASN A 305 PHE A 318 C 3 HIS A 203 ? SER A 204 ? HIS A 423 SER A 424 D 1 HIS A 203 ? SER A 204 ? HIS A 423 SER A 424 D 2 ASN A 85 ? PHE A 98 ? ASN A 305 PHE A 318 D 3 GLN A 454 ? SER A 461 ? GLN A 674 SER A 681 D 4 LYS A 103 ? ASN A 108 ? LYS A 323 ASN A 328 D 5 THR A 111 ? ILE A 114 ? THR A 331 ILE A 334 E 1 THR A 111 ? ILE A 114 ? THR A 331 ILE A 334 E 2 LYS A 103 ? ASN A 108 ? LYS A 323 ASN A 328 E 3 GLN A 454 ? SER A 461 ? GLN A 674 SER A 681 E 4 ARG A 25 ? LEU A 29 ? ARG A 245 LEU A 249 E 5 PHE A 152 ? MET A 153 ? PHE A 372 MET A 373 F 1 GLN A 39 ? ILE A 40 ? GLN A 259 ILE A 260 F 2 PHE A 55 ? TYR A 63 ? PHE A 275 TYR A 283 F 3 GLN A 156 ? THR A 161 ? GLN A 376 THR A 381 G 1 GLN A 39 ? ILE A 40 ? GLN A 259 ILE A 260 G 2 PHE A 55 ? TYR A 63 ? PHE A 275 TYR A 283 G 3 ILE A 428 ? ASN A 432 ? ILE A 648 ASN A 652 G 4 THR A 121 ? THR A 126 ? THR A 341 THR A 346 G 5 GLN A 183 ? ARG A 186 ? GLN A 403 ARG A 406 H 1 ALA A 207 ? HIS A 208 ? ALA A 427 HIS A 428 H 2 THR A 514 ? ARG A 515 ? THR A 734 ARG A 735 I 1 TYR A 225 ? GLN A 231 ? TYR A 445 GLN A 451 I 2 GLN A 240 ? GLN A 246 ? GLN A 460 GLN A 466 J 1 LEU A 260 ? PRO A 261 ? LEU A 480 PRO A 481 J 2 MET A 386 ? VAL A 387 ? MET A 606 VAL A 607 K 1 ARG A 269 ? SER A 271 ? ARG A 489 SER A 491 K 2 PHE A 315 ? PRO A 317 ? PHE A 535 PRO A 537 L 1 LYS A 289 ? TYR A 290 ? LYS A 509 TYR A 510 L 2 SER A 297 ? LEU A 298 ? SER A 517 LEU A 518 M 1 ILE A 323 ? GLY A 325 ? ILE A 543 GLY A 545 M 2 VAL A 339 ? ILE A 341 ? VAL A 559 ILE A 561 N 1 GLY A 359 ? SER A 362 ? GLY A 579 SER A 582 N 2 THR A 374 ? VAL A 377 ? THR A 594 VAL A 597 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 152 ? O PHE A 372 N THR A 26 ? N THR A 246 A 2 3 N LEU A 29 ? N LEU A 249 O SER A 456 ? O SER A 676 A 3 4 O SER A 461 ? O SER A 681 N LYS A 96 ? N LYS A 316 A 4 5 N ARG A 89 ? N ARG A 309 O GLU A 467 ? O GLU A 687 A 5 6 O ILE A 464 ? O ILE A 684 N THR A 21 ? N THR A 241 B 1 2 N THR A 21 ? N THR A 241 O ILE A 464 ? O ILE A 684 B 2 3 O GLU A 467 ? O GLU A 687 N ARG A 89 ? N ARG A 309 B 3 4 N LEU A 93 ? N LEU A 313 O TYR A 195 ? O TYR A 415 C 1 2 O TYR A 195 ? O TYR A 415 N LEU A 93 ? N LEU A 313 C 2 3 N PHE A 88 ? N PHE A 308 O HIS A 203 ? O HIS A 423 D 1 2 O HIS A 203 ? O HIS A 423 N PHE A 88 ? N PHE A 308 D 2 3 N LYS A 96 ? N LYS A 316 O SER A 461 ? O SER A 681 D 3 4 O TYR A 455 ? O TYR A 675 N LYS A 103 ? N LYS A 323 D 4 5 N THR A 106 ? N THR A 326 O THR A 113 ? O THR A 333 E 1 2 O THR A 113 ? O THR A 333 N THR A 106 ? N THR A 326 E 2 3 N LYS A 103 ? N LYS A 323 O TYR A 455 ? O TYR A 675 E 3 4 O SER A 456 ? O SER A 676 N LEU A 29 ? N LEU A 249 E 4 5 N THR A 26 ? N THR A 246 O PHE A 152 ? O PHE A 372 F 1 2 N ILE A 40 ? N ILE A 260 O GLY A 56 ? O GLY A 276 F 2 3 N PHE A 55 ? N PHE A 275 O THR A 161 ? O THR A 381 G 1 2 N ILE A 40 ? N ILE A 260 O GLY A 56 ? O GLY A 276 G 2 3 N GLY A 62 ? N GLY A 282 O ILE A 430 ? O ILE A 650 G 3 4 O LEU A 429 ? O LEU A 649 N PHE A 125 ? N PHE A 345 G 4 5 N ILE A 122 ? N ILE A 342 O LEU A 185 ? O LEU A 405 H 1 2 N ALA A 207 ? N ALA A 427 O ARG A 515 ? O ARG A 735 I 1 2 N TYR A 226 ? N TYR A 446 O SER A 245 ? O SER A 465 J 1 2 N LEU A 260 ? N LEU A 480 O VAL A 387 ? O VAL A 607 K 1 2 N VAL A 270 ? N VAL A 490 O PHE A 316 ? O PHE A 536 L 1 2 N TYR A 290 ? N TYR A 510 O SER A 297 ? O SER A 517 M 1 2 N PHE A 324 ? N PHE A 544 O MET A 340 ? O MET A 560 N 1 2 N GLY A 359 ? N GLY A 579 O VAL A 377 ? O VAL A 597 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ASN 520 ? ? N A PRO 521 ? ? CD A PRO 521 ? ? 105.75 120.60 -14.85 2.20 Y 2 1 C A GLY 522 ? ? N A PRO 523 ? ? CA A PRO 523 ? ? 135.07 119.30 15.77 1.50 Y 3 1 C A GLY 522 ? ? N A PRO 523 ? ? CD A PRO 523 ? ? 107.43 128.40 -20.97 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 227 ? ? -58.90 178.64 2 1 ASN A 253 ? ? 46.95 20.02 3 1 SER A 261 ? ? -126.23 -169.71 4 1 ASN A 262 ? ? -67.50 14.03 5 1 SER A 269 ? ? -100.76 -164.07 6 1 ASN A 270 ? ? -58.17 18.45 7 1 HIS A 290 ? ? -57.25 -4.21 8 1 GLU A 349 ? ? -66.16 0.18 9 1 LEU A 356 ? ? -58.55 172.26 10 1 PRO A 366 ? ? -57.72 -0.49 11 1 GLN A 376 ? ? -59.76 176.56 12 1 ASN A 384 ? ? -109.62 68.75 13 1 ARG A 391 ? ? -67.67 15.99 14 1 SER A 393 ? ? -58.86 -178.31 15 1 GLU A 398 ? ? -61.03 12.64 16 1 GLN A 403 ? ? -58.64 89.84 17 1 SER A 424 ? ? -57.93 87.10 18 1 GLN A 430 ? ? -119.94 -169.89 19 1 TYR A 443 ? ? -58.90 -1.92 20 1 THR A 453 ? ? -72.64 32.15 21 1 ASN A 458 ? ? -52.61 79.12 22 1 PRO A 469 ? ? -59.49 -6.74 23 1 THR A 471 ? ? -92.51 30.61 24 1 GLN A 475 ? ? -59.29 -176.87 25 1 ASN A 499 ? ? -115.94 69.15 26 1 ASN A 520 ? ? -171.66 -169.60 27 1 PRO A 521 ? ? -13.58 -15.95 28 1 ASP A 531 ? ? 58.16 19.13 29 1 GLU A 532 ? ? -108.47 67.01 30 1 VAL A 541 ? ? -107.27 -169.31 31 1 GLU A 550 ? ? -69.88 -167.03 32 1 ASN A 553 ? ? 38.62 18.13 33 1 GLU A 565 ? ? -68.61 27.42 34 1 ARG A 568 ? ? -63.23 23.57 35 1 PRO A 572 ? ? -64.51 -168.80 36 1 ASN A 584 ? A -135.25 -123.04 37 1 LEU A 585 ? B -68.13 56.57 38 1 GLN A 586 ? A -46.58 156.37 39 1 GLN A 586 ? B -33.57 168.32 40 1 ARG A 587 ? B -148.40 -128.76 41 1 ASP A 610 ? ? -57.95 179.52 42 1 ASP A 612 ? ? -78.30 -167.68 43 1 LEU A 615 ? ? -44.38 -17.15 44 1 HIS A 625 ? ? -68.52 93.16 45 1 HIS A 631 ? ? 39.49 57.19 46 1 PRO A 632 ? ? -54.06 31.50 47 1 PRO A 646 ? ? -59.14 177.76 48 1 ALA A 657 ? ? -60.11 -167.96 49 1 SER A 666 ? ? -57.56 -179.62 50 1 ARG A 695 ? ? -57.92 105.10 51 1 TYR A 706 ? ? -68.09 8.71 52 1 PHE A 714 ? ? 48.24 17.52 53 1 THR A 718 ? ? -58.68 2.71 54 1 ARG A 731 ? ? -58.14 72.23 55 1 THR A 734 ? ? -68.47 89.37 # _pdbx_molecule_features.prd_id PRD_900013 _pdbx_molecule_features.name 'sucrose octasulfate' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900013 _pdbx_molecule.asym_id B # _pdbx_point_symmetry.entry_id 3J4P _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.circular_symmetry ? _pdbx_point_symmetry.H-M_notation ? # _pdbx_entry_details.entry_id 3J4P _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SAMPLE CONTAINED FULL-LENGTH CAPSID PROTEIN, BUT RESIDUES 1-220 WERE NOT MODELED.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J4P _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value 25 _em_3d_fitting.target_criteria CC _em_3d_fitting.details 'REFINEMENT PROTOCOL--RIGID BODY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3J1Q _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3J1Q # _em_3d_reconstruction.entry_id 3J4P _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Fourier methods' _em_3d_reconstruction.nominal_pixel_size 1.3067 _em_3d_reconstruction.actual_pixel_size 1.3067 _em_3d_reconstruction.resolution 4.8 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'Final map was amplitude corrected using embfactor.' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 45000 _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '10 mM Tris, 125 mM NaCl, 1 mM MgCl2' _em_buffer.pH 6.8 _em_buffer.details '10 mM Tris, 125 mM NaCl, 1 mM MgCl2' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Recombinant Adeno-Associated Virus DJ' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 3J4P _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 5207 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 3J4P _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2013-04-15 _em_imaging.temperature 94 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 120000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 120 _em_imaging.details ? _em_imaging.specimen_holder_type 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '400 mesh carbon-coated grids (C-flat) glow-discharged for 5 seconds (Gatan Model 950)' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J4P _em_vitrification.id 1 _em_vitrification.details 'Both sides of the grid were blotted for 2.5 seconds before plunging in liquid ethane (FEI VITROBOT MARK IV).' _em_vitrification.citation_id ? _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method 'Both sides of the grid were blotted for 2.5 seconds.' _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J4P _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J4P _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GU4 O1 O N N 137 GU4 C1 C N S 138 GU4 O5 O N N 139 GU4 C5 C N R 140 GU4 C6 C N N 141 GU4 O6 O N N 142 GU4 S6 S N N 143 GU4 O22 O N N 144 GU4 O23 O N N 145 GU4 O21 O N N 146 GU4 C4 C N R 147 GU4 O4 O N N 148 GU4 S4 S N N 149 GU4 O25 O N N 150 GU4 O26 O N N 151 GU4 O24 O N N 152 GU4 C3 C N S 153 GU4 O3 O N N 154 GU4 S3 S N N 155 GU4 O28 O N N 156 GU4 O29 O N N 157 GU4 O27 O N N 158 GU4 C2 C N R 159 GU4 O2 O N N 160 GU4 S2 S N N 161 GU4 O11 O N N 162 GU4 O12 O N N 163 GU4 O10 O N N 164 GU4 HO1 H N N 165 GU4 H1 H N N 166 GU4 H5 H N N 167 GU4 H61 H N N 168 GU4 H62 H N N 169 GU4 H4 H N N 170 GU4 H3 H N N 171 GU4 H2 H N N 172 GU4 HO21 H N N 173 GU4 HO24 H N N 174 GU4 HO29 H N N 175 GU4 HO10 H N N 176 HIS N N N N 177 HIS CA C N S 178 HIS C C N N 179 HIS O O N N 180 HIS CB C N N 181 HIS CG C Y N 182 HIS ND1 N Y N 183 HIS CD2 C Y N 184 HIS CE1 C Y N 185 HIS NE2 N Y N 186 HIS OXT O N N 187 HIS H H N N 188 HIS H2 H N N 189 HIS HA H N N 190 HIS HB2 H N N 191 HIS HB3 H N N 192 HIS HD1 H N N 193 HIS HD2 H N N 194 HIS HE1 H N N 195 HIS HE2 H N N 196 HIS HXT H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 ILE N N N N 201 ILE CA C N S 202 ILE C C N N 203 ILE O O N N 204 ILE CB C N S 205 ILE CG1 C N N 206 ILE CG2 C N N 207 ILE CD1 C N N 208 ILE OXT O N N 209 ILE H H N N 210 ILE H2 H N N 211 ILE HA H N N 212 ILE HB H N N 213 ILE HG12 H N N 214 ILE HG13 H N N 215 ILE HG21 H N N 216 ILE HG22 H N N 217 ILE HG23 H N N 218 ILE HD11 H N N 219 ILE HD12 H N N 220 ILE HD13 H N N 221 ILE HXT H N N 222 LEU N N N N 223 LEU CA C N S 224 LEU C C N N 225 LEU O O N N 226 LEU CB C N N 227 LEU CG C N N 228 LEU CD1 C N N 229 LEU CD2 C N N 230 LEU OXT O N N 231 LEU H H N N 232 LEU H2 H N N 233 LEU HA H N N 234 LEU HB2 H N N 235 LEU HB3 H N N 236 LEU HG H N N 237 LEU HD11 H N N 238 LEU HD12 H N N 239 LEU HD13 H N N 240 LEU HD21 H N N 241 LEU HD22 H N N 242 LEU HD23 H N N 243 LEU HXT H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 MG MG MG N N 290 NA NA NA N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 YYJ C1 C N N 433 YYJ C2 C N R 434 YYJ C3 C N S 435 YYJ C4 C N R 436 YYJ C5 C N R 437 YYJ C6 C N N 438 YYJ O1 O N N 439 YYJ O1S1 O N N 440 YYJ O1S3 O N N 441 YYJ O1S4 O N N 442 YYJ O1S6 O N N 443 YYJ O2 O N N 444 YYJ O2S1 O N N 445 YYJ O2S3 O N N 446 YYJ O2S4 O N N 447 YYJ O2S6 O N N 448 YYJ O3 O N N 449 YYJ O3S1 O N N 450 YYJ O3S3 O N N 451 YYJ O3S4 O N N 452 YYJ O3S6 O N N 453 YYJ O4 O N N 454 YYJ O5 O N N 455 YYJ O6 O N N 456 YYJ S1 S N N 457 YYJ S3 S N N 458 YYJ S4 S N N 459 YYJ S6 S N N 460 YYJ H11 H N N 461 YYJ H12 H N N 462 YYJ H1S1 H N N 463 YYJ H1S3 H N N 464 YYJ H1S4 H N N 465 YYJ H1S6 H N N 466 YYJ HO2 H N N 467 YYJ H3 H N N 468 YYJ H4 H N N 469 YYJ H5 H N N 470 YYJ H61 H N N 471 YYJ H62 H N N 472 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GU4 O1 C1 sing N N 129 GU4 O1 HO1 sing N N 130 GU4 C1 O5 sing N N 131 GU4 C1 C2 sing N N 132 GU4 C1 H1 sing N N 133 GU4 O5 C5 sing N N 134 GU4 C5 C6 sing N N 135 GU4 C5 C4 sing N N 136 GU4 C5 H5 sing N N 137 GU4 C6 O6 sing N N 138 GU4 C6 H61 sing N N 139 GU4 C6 H62 sing N N 140 GU4 O6 S6 sing N N 141 GU4 S6 O22 doub N N 142 GU4 S6 O23 doub N N 143 GU4 S6 O21 sing N N 144 GU4 C4 O4 sing N N 145 GU4 C4 C3 sing N N 146 GU4 C4 H4 sing N N 147 GU4 O4 S4 sing N N 148 GU4 S4 O25 doub N N 149 GU4 S4 O26 doub N N 150 GU4 S4 O24 sing N N 151 GU4 C3 O3 sing N N 152 GU4 C3 C2 sing N N 153 GU4 C3 H3 sing N N 154 GU4 O3 S3 sing N N 155 GU4 S3 O28 doub N N 156 GU4 S3 O29 sing N N 157 GU4 S3 O27 doub N N 158 GU4 C2 O2 sing N N 159 GU4 C2 H2 sing N N 160 GU4 O2 S2 sing N N 161 GU4 S2 O11 doub N N 162 GU4 S2 O12 doub N N 163 GU4 S2 O10 sing N N 164 GU4 O21 HO21 sing N N 165 GU4 O24 HO24 sing N N 166 GU4 O29 HO29 sing N N 167 GU4 O10 HO10 sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 YYJ C1 C2 sing N N 416 YYJ C1 O1 sing N N 417 YYJ C1 H11 sing N N 418 YYJ C1 H12 sing N N 419 YYJ C2 C3 sing N N 420 YYJ C2 O2 sing N N 421 YYJ C2 O5 sing N N 422 YYJ C3 C4 sing N N 423 YYJ C3 O3 sing N N 424 YYJ C3 H3 sing N N 425 YYJ C4 C5 sing N N 426 YYJ C4 O4 sing N N 427 YYJ C4 H4 sing N N 428 YYJ C5 C6 sing N N 429 YYJ C5 O5 sing N N 430 YYJ C5 H5 sing N N 431 YYJ C6 O6 sing N N 432 YYJ C6 H61 sing N N 433 YYJ C6 H62 sing N N 434 YYJ O1 S1 sing N N 435 YYJ O1S1 S1 sing N N 436 YYJ O1S1 H1S1 sing N N 437 YYJ O1S3 H1S3 sing N N 438 YYJ O1S3 S3 sing N N 439 YYJ O1S4 S4 sing N N 440 YYJ O1S4 H1S4 sing N N 441 YYJ O1S6 H1S6 sing N N 442 YYJ O1S6 S6 sing N N 443 YYJ O2 HO2 sing N N 444 YYJ O2S1 S1 doub N N 445 YYJ O2S3 S3 doub N N 446 YYJ O2S4 S4 doub N N 447 YYJ O2S6 S6 doub N N 448 YYJ O3 S3 sing N N 449 YYJ O3S1 S1 doub N N 450 YYJ O3S3 S3 doub N N 451 YYJ O3S4 S4 doub N N 452 YYJ O3S6 S6 doub N N 453 YYJ O4 S4 sing N N 454 YYJ O6 S6 sing N N 455 # _em_ctf_correction.id 1 _em_ctf_correction.details 'each particle' _em_ctf_correction.type . # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.value 3.7 _em_entity_assembly_molwt.units MEGADALTONS # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? 2 Appion ? RECONSTRUCTION ? 1 3 FREALIGN ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GU4 1 n 2 YYJ 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3J1Q # _atom_sites.entry_id 3J4P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O S # loop_