HEADER VIRUS 10-SEP-13 3J4P TITLE ELECTRON MICROSCOPY ANALYSIS OF A DISACCHARIDE ANALOG COMPLEX REVEALS TITLE 2 RECEPTOR INTERACTIONS OF ADENO-ASSOCIATED VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS; SOURCE 3 ORGANISM_TAXID: 272636; SOURCE 4 GENE: CAP; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAVDJ KEYWDS VIRUS CELL-RECEPTOR INTERACTION, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Q.XIE,M.S.CHAPMAN REVDAT 5 21-FEB-24 3J4P 1 REMARK HETSYN REVDAT 4 29-JUL-20 3J4P 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 18-JUL-18 3J4P 1 REMARK REVDAT 2 20-NOV-13 3J4P 1 JRNL REVDAT 1 16-OCT-13 3J4P 0 JRNL AUTH Q.XIE,M.SPILMAN,N.L.MEYER,T.F.LERCH,S.M.STAGG,M.S.CHAPMAN JRNL TITL ELECTRON MICROSCOPY ANALYSIS OF A DISACCHARIDE ANALOG JRNL TITL 2 COMPLEX REVEALS RECEPTOR INTERACTIONS OF ADENO-ASSOCIATED JRNL TITL 3 VIRUS. JRNL REF J.STRUCT.BIOL. V. 184 129 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 24036405 JRNL DOI 10.1016/J.JSB.2013.09.004 REMARK 2 REMARK 2 RESOLUTION. 4.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, APPION, FREALIGN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3J1Q REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CC REMARK 3 OVERALL ANISOTROPIC B VALUE : 25.000 REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.307 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.800 REMARK 3 NUMBER OF PARTICLES : 45000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FINAL MAP WAS AMPLITUDE CORRECTED USING EMBFACTOR. REMARK 4 REMARK 4 3J4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000160247. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RECOMBINANT ADENO-ASSOCIATED REMARK 245 VIRUS DJ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : 400 MESH CARBON-COATED GRIDS (C REMARK 245 -FLAT) GLOW-DISCHARGED FOR 5 REMARK 245 SECONDS (GATAN MODEL 950) REMARK 245 SAMPLE VITRIFICATION DETAILS : BOTH SIDES OF THE GRID WERE REMARK 245 BLOTTED FOR 2.5 SECONDS BEFORE REMARK 245 PLUNGING IN LIQUID ETHANE (FEI REMARK 245 VITROBOT MARK IV). REMARK 245 SAMPLE BUFFER : 10 MM TRIS, 125 MM NACL, 1 MM REMARK 245 MGCL2 REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 15-APR-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 94.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 120000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 120 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 2 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 3 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 4 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 8 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 10 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 13 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 14 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 15 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 19 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 20 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 22 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 24 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 27 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 28 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 29 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 33 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 34 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 35 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 38 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 42 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 43 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 44 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 45 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 48 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 49 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 50 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 52 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 54 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 55 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 58 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 59 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 60 -0.809017 0.309017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 521 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 PRO A 523 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 523 C - N - CD ANGL. DEV. = -21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 227 178.64 -58.90 REMARK 500 ASN A 253 20.02 46.95 REMARK 500 SER A 261 -169.71 -126.23 REMARK 500 ASN A 262 14.03 -67.50 REMARK 500 SER A 269 -164.07 -100.76 REMARK 500 ASN A 270 18.45 -58.17 REMARK 500 HIS A 290 -4.21 -57.25 REMARK 500 GLU A 349 0.18 -66.16 REMARK 500 LEU A 356 172.26 -58.55 REMARK 500 PRO A 366 -0.49 -57.72 REMARK 500 GLN A 376 176.56 -59.76 REMARK 500 ASN A 384 68.75 -109.62 REMARK 500 ARG A 391 15.99 -67.67 REMARK 500 SER A 393 -178.31 -58.86 REMARK 500 GLU A 398 12.64 -61.03 REMARK 500 GLN A 403 89.84 -58.64 REMARK 500 SER A 424 87.10 -57.93 REMARK 500 GLN A 430 -169.89 -119.94 REMARK 500 TYR A 443 -1.92 -58.90 REMARK 500 THR A 453 32.15 -72.64 REMARK 500 ASN A 458 79.12 -52.61 REMARK 500 PRO A 469 -6.74 -59.49 REMARK 500 THR A 471 30.61 -92.51 REMARK 500 GLN A 475 -176.87 -59.29 REMARK 500 ASN A 499 69.15 -115.94 REMARK 500 ASN A 520 -169.60 -171.66 REMARK 500 PRO A 521 -15.95 -13.58 REMARK 500 ASP A 531 19.13 58.16 REMARK 500 GLU A 532 67.01 -108.47 REMARK 500 VAL A 541 -169.31 -107.27 REMARK 500 GLU A 550 -167.03 -69.88 REMARK 500 ASN A 553 18.13 38.62 REMARK 500 GLU A 565 27.42 -68.61 REMARK 500 ARG A 568 23.57 -63.23 REMARK 500 PRO A 572 -168.80 -64.51 REMARK 500 ASN A 584 -123.04 -135.25 REMARK 500 LEU A 585 56.57 -68.13 REMARK 500 GLN A 586 156.37 -46.58 REMARK 500 GLN A 586 168.32 -33.57 REMARK 500 ARG A 587 -128.76 -148.40 REMARK 500 ASP A 610 179.52 -57.95 REMARK 500 ASP A 612 -167.68 -78.30 REMARK 500 LEU A 615 -17.15 -44.38 REMARK 500 HIS A 625 93.16 -68.52 REMARK 500 HIS A 631 57.19 39.49 REMARK 500 PRO A 632 31.50 -54.06 REMARK 500 PRO A 646 177.76 -59.14 REMARK 500 ALA A 657 -167.96 -60.11 REMARK 500 SER A 666 -179.62 -57.56 REMARK 500 ARG A 695 105.10 -57.92 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5681 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SAMPLE CONTAINED FULL-LENGTH CAPSID PROTEIN, BUT RESIDUES 1-220 REMARK 999 WERE NOT MODELED. DBREF 3J4P A 221 737 PDB 3J4P 3J4P 221 737 SEQRES 1 A 517 VAL GLY ASN SER SER GLY ASN TRP HIS CYS ASP SER THR SEQRES 2 A 517 TRP MET GLY ASP ARG VAL ILE THR THR SER THR ARG THR SEQRES 3 A 517 TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR LYS GLN SEQRES 4 A 517 ILE SER ASN SER THR SER GLY GLY SER SER ASN ASP ASN SEQRES 5 A 517 ALA TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE ASP SEQRES 6 A 517 PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG ASP TRP SEQRES 7 A 517 GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG PRO LYS SEQRES 8 A 517 ARG LEU SER PHE LYS LEU PHE ASN ILE GLN VAL LYS GLU SEQRES 9 A 517 VAL THR GLN ASN GLU GLY THR LYS THR ILE ALA ASN ASN SEQRES 10 A 517 LEU THR SER THR ILE GLN VAL PHE THR ASP SER GLU TYR SEQRES 11 A 517 GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLN GLY CYS SEQRES 12 A 517 LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE PRO GLN SEQRES 13 A 517 TYR GLY TYR LEU THR LEU ASN ASN GLY SER GLN ALA VAL SEQRES 14 A 517 GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE PRO SER SEQRES 15 A 517 GLN MET LEU ARG THR GLY ASN ASN PHE GLN PHE THR TYR SEQRES 16 A 517 THR PHE GLU ASP VAL PRO PHE HIS SER SER TYR ALA HIS SEQRES 17 A 517 SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU ILE ASP SEQRES 18 A 517 GLN TYR LEU TYR TYR LEU SER ARG THR GLN THR THR GLY SEQRES 19 A 517 GLY THR THR ASN THR GLN THR LEU GLY PHE SER GLN GLY SEQRES 20 A 517 GLY PRO ASN THR MET ALA ASN GLN ALA LYS ASN TRP LEU SEQRES 21 A 517 PRO GLY PRO CYS TYR ARG GLN GLN ARG VAL SER LYS THR SEQRES 22 A 517 SER ALA ASP ASN ASN ASN SER GLU TYR SER TRP THR GLY SEQRES 23 A 517 ALA THR LYS TYR HIS LEU ASN GLY ARG ASP SER LEU VAL SEQRES 24 A 517 ASN PRO GLY PRO ALA MET ALA SER HIS LYS ASP ASP GLU SEQRES 25 A 517 GLU LYS PHE PHE PRO GLN SER GLY VAL LEU ILE PHE GLY SEQRES 26 A 517 LYS GLN GLY SER GLU LYS THR ASN VAL ASP ILE GLU LYS SEQRES 27 A 517 VAL MET ILE THR ASP GLU GLU GLU ILE ARG THR THR ASN SEQRES 28 A 517 PRO VAL ALA THR GLU GLN TYR GLY SER VAL SER THR ASN SEQRES 29 A 517 LEU GLN ARG GLY ASN ARG GLN ALA ALA THR ALA ASP VAL SEQRES 30 A 517 ASN THR GLN GLY VAL LEU PRO GLY MET VAL TRP GLN ASP SEQRES 31 A 517 ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE SEQRES 32 A 517 PRO HIS THR ASP GLY HIS PHE HIS PRO SER PRO LEU MET SEQRES 33 A 517 GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN ILE LEU SEQRES 34 A 517 ILE LYS ASN THR PRO VAL PRO ALA ASP PRO PRO THR THR SEQRES 35 A 517 PHE ASN GLN SER LYS LEU ASN SER PHE ILE THR GLN TYR SEQRES 36 A 517 SER THR GLY GLN VAL SER VAL GLU ILE GLU TRP GLU LEU SEQRES 37 A 517 GLN LYS GLU ASN SER LYS ARG TRP ASN PRO GLU ILE GLN SEQRES 38 A 517 TYR THR SER ASN TYR TYR LYS SER THR SER VAL ASP PHE SEQRES 39 A 517 ALA VAL ASN THR GLU GLY VAL TYR SER GLU PRO ARG PRO SEQRES 40 A 517 ILE GLY THR ARG TYR LEU THR ARG ASN LEU HET GU4 B 1 27 HET YYJ B 2 28 HET NA A 802 1 HET MG A 803 1 HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOSE; 2,3,4,6- HETSYN 2 GU4 TETRA-O-SULFONATO-D-GLUCOSE; 2,3,4,6-TETRA-O- HETSYN 3 GU4 SULFONATO-GLUCOSE FORMUL 2 GU4 C6 H12 O18 S4 FORMUL 2 YYJ C6 H12 O18 S4 FORMUL 3 NA NA 1+ FORMUL 4 MG MG 2+ FORMUL 5 HOH *(H2 O) HELIX 1 1 SER A 294 ASN A 304 1 11 HELIX 2 2 CYS A 396 PHE A 400 5 5 SHEET 1 A 6 PHE A 372 MET A 373 0 SHEET 2 A 6 ARG A 245 LEU A 249 1 N THR A 246 O PHE A 372 SHEET 3 A 6 GLN A 674 SER A 681 -1 O SER A 676 N LEU A 249 SHEET 4 A 6 ASN A 305 PHE A 318 -1 N LYS A 316 O SER A 681 SHEET 5 A 6 GLU A 683 LYS A 690 -1 O GLU A 687 N ARG A 309 SHEET 6 A 6 THR A 241 THR A 242 -1 N THR A 241 O ILE A 684 SHEET 1 B 4 THR A 241 THR A 242 0 SHEET 2 B 4 GLU A 683 LYS A 690 -1 O ILE A 684 N THR A 241 SHEET 3 B 4 ASN A 305 PHE A 318 -1 N ARG A 309 O GLU A 687 SHEET 4 B 4 PHE A 411 THR A 416 -1 O TYR A 415 N LEU A 313 SHEET 1 C 3 PHE A 411 THR A 416 0 SHEET 2 C 3 ASN A 305 PHE A 318 -1 N LEU A 313 O TYR A 415 SHEET 3 C 3 HIS A 423 SER A 424 -1 O HIS A 423 N PHE A 308 SHEET 1 D 5 HIS A 423 SER A 424 0 SHEET 2 D 5 ASN A 305 PHE A 318 -1 N PHE A 308 O HIS A 423 SHEET 3 D 5 GLN A 674 SER A 681 -1 O SER A 681 N LYS A 316 SHEET 4 D 5 LYS A 323 ASN A 328 -1 N LYS A 323 O TYR A 675 SHEET 5 D 5 THR A 331 ILE A 334 -1 O THR A 333 N THR A 326 SHEET 1 E 5 THR A 331 ILE A 334 0 SHEET 2 E 5 LYS A 323 ASN A 328 -1 N THR A 326 O THR A 333 SHEET 3 E 5 GLN A 674 SER A 681 -1 O TYR A 675 N LYS A 323 SHEET 4 E 5 ARG A 245 LEU A 249 -1 N LEU A 249 O SER A 676 SHEET 5 E 5 PHE A 372 MET A 373 1 O PHE A 372 N THR A 246 SHEET 1 F 3 GLN A 259 ILE A 260 0 SHEET 2 F 3 PHE A 275 TYR A 283 -1 O GLY A 276 N ILE A 260 SHEET 3 F 3 GLN A 376 THR A 381 -1 O THR A 381 N PHE A 275 SHEET 1 G 5 GLN A 259 ILE A 260 0 SHEET 2 G 5 PHE A 275 TYR A 283 -1 O GLY A 276 N ILE A 260 SHEET 3 G 5 ILE A 648 ASN A 652 -1 O ILE A 650 N GLY A 282 SHEET 4 G 5 THR A 341 THR A 346 -1 N PHE A 345 O LEU A 649 SHEET 5 G 5 GLN A 403 ARG A 406 -1 O LEU A 405 N ILE A 342 SHEET 1 H 2 ALA A 427 HIS A 428 0 SHEET 2 H 2 THR A 734 ARG A 735 1 O ARG A 735 N ALA A 427 SHEET 1 I 2 TYR A 445 GLN A 451 0 SHEET 2 I 2 GLN A 460 GLN A 466 -1 O SER A 465 N TYR A 446 SHEET 1 J 2 LEU A 480 PRO A 481 0 SHEET 2 J 2 MET A 606 VAL A 607 1 O VAL A 607 N LEU A 480 SHEET 1 K 2 ARG A 489 SER A 491 0 SHEET 2 K 2 PHE A 535 PRO A 537 -1 O PHE A 536 N VAL A 490 SHEET 1 L 2 LYS A 509 TYR A 510 0 SHEET 2 L 2 SER A 517 LEU A 518 -1 O SER A 517 N TYR A 510 SHEET 1 M 2 ILE A 543 GLY A 545 0 SHEET 2 M 2 VAL A 559 ILE A 561 -1 O MET A 560 N PHE A 544 SHEET 1 N 2 GLY A 579 SER A 582 0 SHEET 2 N 2 THR A 594 VAL A 597 -1 O VAL A 597 N GLY A 579 LINK C1 GU4 B 1 O2 YYJ B 2 1555 1555 1.40 LINK NA NA A 802 O27 GU4 B 1 1555 1555 2.98 CISPEP 1 ASN A 520 PRO A 521 0 -1.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000