data_3J5V # _entry.id 3J5V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J5V pdb_00003j5v 10.2210/pdb3j5v/pdb RCSB RCSB160289 ? ? WWPDB D_1000160289 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-26 2 'Structure model' 1 1 2014-04-09 3 'Structure model' 1 2 2014-04-23 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_single_particle_entity 2 4 'Structure model' em_software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' em_3d_fitting_list 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_struct_oper_list 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_software.image_processing_id' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_em_3d_fitting_list.accession_code' 5 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 5 'Structure model' '_em_3d_fitting_list.source_name' 7 5 'Structure model' '_em_3d_fitting_list.type' 8 5 'Structure model' '_pdbx_struct_oper_list.name' 9 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 5 'Structure model' '_pdbx_struct_oper_list.type' 11 5 'Structure model' '_struct_ref_seq_dif.details' 12 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J5V _pdbx_database_status.recvd_initial_deposition_date 2013-11-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-5783 'associated EM volume' 'Cryo-EM map of PhuZ201 filament' PDB 3R4V unspecified 'Structure of the phage tubulin PhuZ-GDP' # _audit_author.name 'Zehr, E.A.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'The Structure and Assembly Mechanism of a Novel Three-Stranded Tubulin Filament that Centers Phage DNA' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 1 _citation.page_last 10 _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24631461 _citation.pdbx_database_id_DOI 10.1016/j.str.2014.02.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zehr, E.A.' 1 ? primary 'Kraemer, J.K.' 2 ? primary 'Erb, M.L.' 3 ? primary 'Coker, J.K.C.' 4 ? primary 'Montabana, E.A.' 5 ? primary 'Pogliano, J.' 6 ? primary 'Agard, D.A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PhuZ201 subunit' 35100.004 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASPVKVCLIFAGGTGMNVATKLVDLGEAVHCFDTCDKNVVDVHRSVNVTLTKGTRGAGGNRKVILPLVRPQIPALM DTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPN TQGRSYESINDEIAEKIRKVVLLVNQNHGRLDVHDVANWVRFTDKHNYLIPQVCELHIETTRKDAENVPEAISQLSLYLD PSKEVAFGTPIYRKVGIMKVDDLDVTDDQIHFVINSVGVVEIMKTITDSKLEMTRQQSKFTQRNPIIDADDNVDEDGMVV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASPVKVCLIFAGGTGMNVATKLVDLGEAVHCFDTCDKNVVDVHRSVNVTLTKGTRGAGGNRKVILPLVRPQIPALM DTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPN TQGRSYESINDEIAEKIRKVVLLVNQNHGRLDVHDVANWVRFTDKHNYLIPQVCELHIETTRKDAENVPEAISQLSLYLD PSKEVAFGTPIYRKVGIMKVDDLDVTDDQIHFVINSVGVVEIMKTITDSKLEMTRQQSKFTQRNPIIDADDNVDEDGMVV ; _entity_poly.pdbx_strand_id a _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 PRO n 1 8 VAL n 1 9 LYS n 1 10 VAL n 1 11 CYS n 1 12 LEU n 1 13 ILE n 1 14 PHE n 1 15 ALA n 1 16 GLY n 1 17 GLY n 1 18 THR n 1 19 GLY n 1 20 MET n 1 21 ASN n 1 22 VAL n 1 23 ALA n 1 24 THR n 1 25 LYS n 1 26 LEU n 1 27 VAL n 1 28 ASP n 1 29 LEU n 1 30 GLY n 1 31 GLU n 1 32 ALA n 1 33 VAL n 1 34 HIS n 1 35 CYS n 1 36 PHE n 1 37 ASP n 1 38 THR n 1 39 CYS n 1 40 ASP n 1 41 LYS n 1 42 ASN n 1 43 VAL n 1 44 VAL n 1 45 ASP n 1 46 VAL n 1 47 HIS n 1 48 ARG n 1 49 SER n 1 50 VAL n 1 51 ASN n 1 52 VAL n 1 53 THR n 1 54 LEU n 1 55 THR n 1 56 LYS n 1 57 GLY n 1 58 THR n 1 59 ARG n 1 60 GLY n 1 61 ALA n 1 62 GLY n 1 63 GLY n 1 64 ASN n 1 65 ARG n 1 66 LYS n 1 67 VAL n 1 68 ILE n 1 69 LEU n 1 70 PRO n 1 71 LEU n 1 72 VAL n 1 73 ARG n 1 74 PRO n 1 75 GLN n 1 76 ILE n 1 77 PRO n 1 78 ALA n 1 79 LEU n 1 80 MET n 1 81 ASP n 1 82 THR n 1 83 ILE n 1 84 PRO n 1 85 GLU n 1 86 ALA n 1 87 ASP n 1 88 PHE n 1 89 TYR n 1 90 ILE n 1 91 VAL n 1 92 CYS n 1 93 TYR n 1 94 SER n 1 95 LEU n 1 96 GLY n 1 97 GLY n 1 98 GLY n 1 99 SER n 1 100 GLY n 1 101 SER n 1 102 VAL n 1 103 LEU n 1 104 GLY n 1 105 PRO n 1 106 LEU n 1 107 ILE n 1 108 THR n 1 109 GLY n 1 110 GLN n 1 111 LEU n 1 112 ALA n 1 113 ASP n 1 114 ARG n 1 115 LYS n 1 116 ALA n 1 117 SER n 1 118 PHE n 1 119 VAL n 1 120 SER n 1 121 PHE n 1 122 VAL n 1 123 VAL n 1 124 GLY n 1 125 ALA n 1 126 MET n 1 127 GLU n 1 128 SER n 1 129 THR n 1 130 ASP n 1 131 ASN n 1 132 LEU n 1 133 GLY n 1 134 ASN n 1 135 ASP n 1 136 ILE n 1 137 ASP n 1 138 THR n 1 139 MET n 1 140 LYS n 1 141 THR n 1 142 LEU n 1 143 GLU n 1 144 ALA n 1 145 ILE n 1 146 ALA n 1 147 VAL n 1 148 ASN n 1 149 LYS n 1 150 HIS n 1 151 LEU n 1 152 PRO n 1 153 ILE n 1 154 VAL n 1 155 VAL n 1 156 ASN n 1 157 TYR n 1 158 VAL n 1 159 PRO n 1 160 ASN n 1 161 THR n 1 162 GLN n 1 163 GLY n 1 164 ARG n 1 165 SER n 1 166 TYR n 1 167 GLU n 1 168 SER n 1 169 ILE n 1 170 ASN n 1 171 ASP n 1 172 GLU n 1 173 ILE n 1 174 ALA n 1 175 GLU n 1 176 LYS n 1 177 ILE n 1 178 ARG n 1 179 LYS n 1 180 VAL n 1 181 VAL n 1 182 LEU n 1 183 LEU n 1 184 VAL n 1 185 ASN n 1 186 GLN n 1 187 ASN n 1 188 HIS n 1 189 GLY n 1 190 ARG n 1 191 LEU n 1 192 ASP n 1 193 VAL n 1 194 HIS n 1 195 ASP n 1 196 VAL n 1 197 ALA n 1 198 ASN n 1 199 TRP n 1 200 VAL n 1 201 ARG n 1 202 PHE n 1 203 THR n 1 204 ASP n 1 205 LYS n 1 206 HIS n 1 207 ASN n 1 208 TYR n 1 209 LEU n 1 210 ILE n 1 211 PRO n 1 212 GLN n 1 213 VAL n 1 214 CYS n 1 215 GLU n 1 216 LEU n 1 217 HIS n 1 218 ILE n 1 219 GLU n 1 220 THR n 1 221 THR n 1 222 ARG n 1 223 LYS n 1 224 ASP n 1 225 ALA n 1 226 GLU n 1 227 ASN n 1 228 VAL n 1 229 PRO n 1 230 GLU n 1 231 ALA n 1 232 ILE n 1 233 SER n 1 234 GLN n 1 235 LEU n 1 236 SER n 1 237 LEU n 1 238 TYR n 1 239 LEU n 1 240 ASP n 1 241 PRO n 1 242 SER n 1 243 LYS n 1 244 GLU n 1 245 VAL n 1 246 ALA n 1 247 PHE n 1 248 GLY n 1 249 THR n 1 250 PRO n 1 251 ILE n 1 252 TYR n 1 253 ARG n 1 254 LYS n 1 255 VAL n 1 256 GLY n 1 257 ILE n 1 258 MET n 1 259 LYS n 1 260 VAL n 1 261 ASP n 1 262 ASP n 1 263 LEU n 1 264 ASP n 1 265 VAL n 1 266 THR n 1 267 ASP n 1 268 ASP n 1 269 GLN n 1 270 ILE n 1 271 HIS n 1 272 PHE n 1 273 VAL n 1 274 ILE n 1 275 ASN n 1 276 SER n 1 277 VAL n 1 278 GLY n 1 279 VAL n 1 280 VAL n 1 281 GLU n 1 282 ILE n 1 283 MET n 1 284 LYS n 1 285 THR n 1 286 ILE n 1 287 THR n 1 288 ASP n 1 289 SER n 1 290 LYS n 1 291 LEU n 1 292 GLU n 1 293 MET n 1 294 THR n 1 295 ARG n 1 296 GLN n 1 297 GLN n 1 298 SER n 1 299 LYS n 1 300 PHE n 1 301 THR n 1 302 GLN n 1 303 ARG n 1 304 ASN n 1 305 PRO n 1 306 ILE n 1 307 ILE n 1 308 ASP n 1 309 ALA n 1 310 ASP n 1 311 ASP n 1 312 ASN n 1 313 VAL n 1 314 ASP n 1 315 GLU n 1 316 ASP n 1 317 GLY n 1 318 MET n 1 319 VAL n 1 320 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 201phi2-1p059 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas phage 201phi2-1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198110 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET28a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? a . n A 1 2 SER 2 -3 ? ? ? a . n A 1 3 HIS 3 -2 ? ? ? a . n A 1 4 MET 4 -1 ? ? ? a . n A 1 5 ALA 5 0 ? ? ? a . n A 1 6 SER 6 1 ? ? ? a . n A 1 7 PRO 7 2 2 PRO PRO a . n A 1 8 VAL 8 3 3 VAL VAL a . n A 1 9 LYS 9 4 4 LYS LYS a . n A 1 10 VAL 10 5 5 VAL VAL a . n A 1 11 CYS 11 6 6 CYS CYS a . n A 1 12 LEU 12 7 7 LEU LEU a . n A 1 13 ILE 13 8 8 ILE ILE a . n A 1 14 PHE 14 9 9 PHE PHE a . n A 1 15 ALA 15 10 10 ALA ALA a . n A 1 16 GLY 16 11 11 GLY GLY a . n A 1 17 GLY 17 12 12 GLY GLY a . n A 1 18 THR 18 13 13 THR THR a . n A 1 19 GLY 19 14 14 GLY GLY a . n A 1 20 MET 20 15 15 MET MET a . n A 1 21 ASN 21 16 16 ASN ASN a . n A 1 22 VAL 22 17 17 VAL VAL a . n A 1 23 ALA 23 18 18 ALA ALA a . n A 1 24 THR 24 19 19 THR THR a . n A 1 25 LYS 25 20 20 LYS LYS a . n A 1 26 LEU 26 21 21 LEU LEU a . n A 1 27 VAL 27 22 22 VAL VAL a . n A 1 28 ASP 28 23 23 ASP ASP a . n A 1 29 LEU 29 24 24 LEU LEU a . n A 1 30 GLY 30 25 25 GLY GLY a . n A 1 31 GLU 31 26 26 GLU GLU a . n A 1 32 ALA 32 27 27 ALA ALA a . n A 1 33 VAL 33 28 28 VAL VAL a . n A 1 34 HIS 34 29 29 HIS HIS a . n A 1 35 CYS 35 30 30 CYS CYS a . n A 1 36 PHE 36 31 31 PHE PHE a . n A 1 37 ASP 37 32 32 ASP ASP a . n A 1 38 THR 38 33 33 THR THR a . n A 1 39 CYS 39 34 34 CYS CYS a . n A 1 40 ASP 40 35 35 ASP ASP a . n A 1 41 LYS 41 36 36 LYS LYS a . n A 1 42 ASN 42 37 37 ASN ASN a . n A 1 43 VAL 43 38 38 VAL VAL a . n A 1 44 VAL 44 39 39 VAL VAL a . n A 1 45 ASP 45 40 40 ASP ASP a . n A 1 46 VAL 46 41 41 VAL VAL a . n A 1 47 HIS 47 42 42 HIS HIS a . n A 1 48 ARG 48 43 43 ARG ARG a . n A 1 49 SER 49 44 44 SER SER a . n A 1 50 VAL 50 45 45 VAL VAL a . n A 1 51 ASN 51 46 46 ASN ASN a . n A 1 52 VAL 52 47 47 VAL VAL a . n A 1 53 THR 53 48 48 THR THR a . n A 1 54 LEU 54 49 49 LEU LEU a . n A 1 55 THR 55 50 50 THR THR a . n A 1 56 LYS 56 51 51 LYS LYS a . n A 1 57 GLY 57 52 52 GLY GLY a . n A 1 58 THR 58 53 53 THR THR a . n A 1 59 ARG 59 54 54 ARG ARG a . n A 1 60 GLY 60 55 ? ? ? a . n A 1 61 ALA 61 56 ? ? ? a . n A 1 62 GLY 62 57 ? ? ? a . n A 1 63 GLY 63 58 58 GLY GLY a . n A 1 64 ASN 64 59 59 ASN ASN a . n A 1 65 ARG 65 60 60 ARG ARG a . n A 1 66 LYS 66 61 61 LYS LYS a . n A 1 67 VAL 67 62 62 VAL VAL a . n A 1 68 ILE 68 63 63 ILE ILE a . n A 1 69 LEU 69 64 64 LEU LEU a . n A 1 70 PRO 70 65 65 PRO PRO a . n A 1 71 LEU 71 66 66 LEU LEU a . n A 1 72 VAL 72 67 67 VAL VAL a . n A 1 73 ARG 73 68 68 ARG ARG a . n A 1 74 PRO 74 69 69 PRO PRO a . n A 1 75 GLN 75 70 70 GLN GLN a . n A 1 76 ILE 76 71 71 ILE ILE a . n A 1 77 PRO 77 72 72 PRO PRO a . n A 1 78 ALA 78 73 73 ALA ALA a . n A 1 79 LEU 79 74 74 LEU LEU a . n A 1 80 MET 80 75 75 MET MET a . n A 1 81 ASP 81 76 76 ASP ASP a . n A 1 82 THR 82 77 77 THR THR a . n A 1 83 ILE 83 78 78 ILE ILE a . n A 1 84 PRO 84 79 79 PRO PRO a . n A 1 85 GLU 85 80 80 GLU GLU a . n A 1 86 ALA 86 81 81 ALA ALA a . n A 1 87 ASP 87 82 82 ASP ASP a . n A 1 88 PHE 88 83 83 PHE PHE a . n A 1 89 TYR 89 84 84 TYR TYR a . n A 1 90 ILE 90 85 85 ILE ILE a . n A 1 91 VAL 91 86 86 VAL VAL a . n A 1 92 CYS 92 87 87 CYS CYS a . n A 1 93 TYR 93 88 88 TYR TYR a . n A 1 94 SER 94 89 89 SER SER a . n A 1 95 LEU 95 90 90 LEU LEU a . n A 1 96 GLY 96 91 91 GLY GLY a . n A 1 97 GLY 97 92 92 GLY GLY a . n A 1 98 GLY 98 93 93 GLY GLY a . n A 1 99 SER 99 94 94 SER SER a . n A 1 100 GLY 100 95 95 GLY GLY a . n A 1 101 SER 101 96 96 SER SER a . n A 1 102 VAL 102 97 97 VAL VAL a . n A 1 103 LEU 103 98 98 LEU LEU a . n A 1 104 GLY 104 99 99 GLY GLY a . n A 1 105 PRO 105 100 100 PRO PRO a . n A 1 106 LEU 106 101 101 LEU LEU a . n A 1 107 ILE 107 102 102 ILE ILE a . n A 1 108 THR 108 103 103 THR THR a . n A 1 109 GLY 109 104 104 GLY GLY a . n A 1 110 GLN 110 105 105 GLN GLN a . n A 1 111 LEU 111 106 106 LEU LEU a . n A 1 112 ALA 112 107 107 ALA ALA a . n A 1 113 ASP 113 108 108 ASP ASP a . n A 1 114 ARG 114 109 109 ARG ARG a . n A 1 115 LYS 115 110 110 LYS LYS a . n A 1 116 ALA 116 111 111 ALA ALA a . n A 1 117 SER 117 112 112 SER SER a . n A 1 118 PHE 118 113 113 PHE PHE a . n A 1 119 VAL 119 114 114 VAL VAL a . n A 1 120 SER 120 115 115 SER SER a . n A 1 121 PHE 121 116 116 PHE PHE a . n A 1 122 VAL 122 117 117 VAL VAL a . n A 1 123 VAL 123 118 118 VAL VAL a . n A 1 124 GLY 124 119 119 GLY GLY a . n A 1 125 ALA 125 120 120 ALA ALA a . n A 1 126 MET 126 121 121 MET MET a . n A 1 127 GLU 127 122 122 GLU GLU a . n A 1 128 SER 128 123 123 SER SER a . n A 1 129 THR 129 124 124 THR THR a . n A 1 130 ASP 130 125 125 ASP ASP a . n A 1 131 ASN 131 126 126 ASN ASN a . n A 1 132 LEU 132 127 127 LEU LEU a . n A 1 133 GLY 133 128 128 GLY GLY a . n A 1 134 ASN 134 129 129 ASN ASN a . n A 1 135 ASP 135 130 130 ASP ASP a . n A 1 136 ILE 136 131 131 ILE ILE a . n A 1 137 ASP 137 132 132 ASP ASP a . n A 1 138 THR 138 133 133 THR THR a . n A 1 139 MET 139 134 134 MET MET a . n A 1 140 LYS 140 135 135 LYS LYS a . n A 1 141 THR 141 136 136 THR THR a . n A 1 142 LEU 142 137 137 LEU LEU a . n A 1 143 GLU 143 138 138 GLU GLU a . n A 1 144 ALA 144 139 139 ALA ALA a . n A 1 145 ILE 145 140 140 ILE ILE a . n A 1 146 ALA 146 141 141 ALA ALA a . n A 1 147 VAL 147 142 142 VAL VAL a . n A 1 148 ASN 148 143 143 ASN ASN a . n A 1 149 LYS 149 144 144 LYS LYS a . n A 1 150 HIS 150 145 145 HIS HIS a . n A 1 151 LEU 151 146 146 LEU LEU a . n A 1 152 PRO 152 147 147 PRO PRO a . n A 1 153 ILE 153 148 148 ILE ILE a . n A 1 154 VAL 154 149 149 VAL VAL a . n A 1 155 VAL 155 150 150 VAL VAL a . n A 1 156 ASN 156 151 151 ASN ASN a . n A 1 157 TYR 157 152 152 TYR TYR a . n A 1 158 VAL 158 153 153 VAL VAL a . n A 1 159 PRO 159 154 154 PRO PRO a . n A 1 160 ASN 160 155 155 ASN ASN a . n A 1 161 THR 161 156 156 THR THR a . n A 1 162 GLN 162 157 157 GLN GLN a . n A 1 163 GLY 163 158 158 GLY GLY a . n A 1 164 ARG 164 159 159 ARG ARG a . n A 1 165 SER 165 160 160 SER SER a . n A 1 166 TYR 166 161 161 TYR TYR a . n A 1 167 GLU 167 162 162 GLU GLU a . n A 1 168 SER 168 163 163 SER SER a . n A 1 169 ILE 169 164 164 ILE ILE a . n A 1 170 ASN 170 165 165 ASN ASN a . n A 1 171 ASP 171 166 166 ASP ASP a . n A 1 172 GLU 172 167 167 GLU GLU a . n A 1 173 ILE 173 168 168 ILE ILE a . n A 1 174 ALA 174 169 169 ALA ALA a . n A 1 175 GLU 175 170 170 GLU GLU a . n A 1 176 LYS 176 171 171 LYS LYS a . n A 1 177 ILE 177 172 172 ILE ILE a . n A 1 178 ARG 178 173 173 ARG ARG a . n A 1 179 LYS 179 174 174 LYS LYS a . n A 1 180 VAL 180 175 175 VAL VAL a . n A 1 181 VAL 181 176 176 VAL VAL a . n A 1 182 LEU 182 177 177 LEU LEU a . n A 1 183 LEU 183 178 178 LEU LEU a . n A 1 184 VAL 184 179 179 VAL VAL a . n A 1 185 ASN 185 180 180 ASN ASN a . n A 1 186 GLN 186 181 181 GLN GLN a . n A 1 187 ASN 187 182 182 ASN ASN a . n A 1 188 HIS 188 183 183 HIS HIS a . n A 1 189 GLY 189 184 184 GLY GLY a . n A 1 190 ARG 190 185 185 ARG ARG a . n A 1 191 LEU 191 186 186 LEU LEU a . n A 1 192 ASP 192 187 187 ASP ASP a . n A 1 193 VAL 193 188 188 VAL VAL a . n A 1 194 HIS 194 189 189 HIS HIS a . n A 1 195 ASP 195 190 190 ASP ASP a . n A 1 196 VAL 196 191 191 VAL VAL a . n A 1 197 ALA 197 192 192 ALA ALA a . n A 1 198 ASN 198 193 193 ASN ASN a . n A 1 199 TRP 199 194 194 TRP TRP a . n A 1 200 VAL 200 195 195 VAL VAL a . n A 1 201 ARG 201 196 196 ARG ARG a . n A 1 202 PHE 202 197 197 PHE PHE a . n A 1 203 THR 203 198 198 THR THR a . n A 1 204 ASP 204 199 199 ASP ASP a . n A 1 205 LYS 205 200 200 LYS LYS a . n A 1 206 HIS 206 201 201 HIS HIS a . n A 1 207 ASN 207 202 202 ASN ASN a . n A 1 208 TYR 208 203 203 TYR TYR a . n A 1 209 LEU 209 204 204 LEU LEU a . n A 1 210 ILE 210 205 205 ILE ILE a . n A 1 211 PRO 211 206 206 PRO PRO a . n A 1 212 GLN 212 207 207 GLN GLN a . n A 1 213 VAL 213 208 208 VAL VAL a . n A 1 214 CYS 214 209 209 CYS CYS a . n A 1 215 GLU 215 210 210 GLU GLU a . n A 1 216 LEU 216 211 211 LEU LEU a . n A 1 217 HIS 217 212 212 HIS HIS a . n A 1 218 ILE 218 213 213 ILE ILE a . n A 1 219 GLU 219 214 214 GLU GLU a . n A 1 220 THR 220 215 215 THR THR a . n A 1 221 THR 221 216 216 THR THR a . n A 1 222 ARG 222 217 217 ARG ARG a . n A 1 223 LYS 223 218 218 LYS LYS a . n A 1 224 ASP 224 219 219 ASP ASP a . n A 1 225 ALA 225 220 220 ALA ALA a . n A 1 226 GLU 226 221 221 GLU GLU a . n A 1 227 ASN 227 222 222 ASN ASN a . n A 1 228 VAL 228 223 223 VAL VAL a . n A 1 229 PRO 229 224 224 PRO PRO a . n A 1 230 GLU 230 225 225 GLU GLU a . n A 1 231 ALA 231 226 226 ALA ALA a . n A 1 232 ILE 232 227 227 ILE ILE a . n A 1 233 SER 233 228 228 SER SER a . n A 1 234 GLN 234 229 229 GLN GLN a . n A 1 235 LEU 235 230 230 LEU LEU a . n A 1 236 SER 236 231 231 SER SER a . n A 1 237 LEU 237 232 232 LEU LEU a . n A 1 238 TYR 238 233 233 TYR TYR a . n A 1 239 LEU 239 234 234 LEU LEU a . n A 1 240 ASP 240 235 235 ASP ASP a . n A 1 241 PRO 241 236 236 PRO PRO a . n A 1 242 SER 242 237 237 SER SER a . n A 1 243 LYS 243 238 238 LYS LYS a . n A 1 244 GLU 244 239 239 GLU GLU a . n A 1 245 VAL 245 240 240 VAL VAL a . n A 1 246 ALA 246 241 241 ALA ALA a . n A 1 247 PHE 247 242 242 PHE PHE a . n A 1 248 GLY 248 243 243 GLY GLY a . n A 1 249 THR 249 244 244 THR THR a . n A 1 250 PRO 250 245 245 PRO PRO a . n A 1 251 ILE 251 246 246 ILE ILE a . n A 1 252 TYR 252 247 247 TYR TYR a . n A 1 253 ARG 253 248 248 ARG ARG a . n A 1 254 LYS 254 249 249 LYS LYS a . n A 1 255 VAL 255 250 250 VAL VAL a . n A 1 256 GLY 256 251 251 GLY GLY a . n A 1 257 ILE 257 252 252 ILE ILE a . n A 1 258 MET 258 253 253 MET MET a . n A 1 259 LYS 259 254 254 LYS LYS a . n A 1 260 VAL 260 255 255 VAL VAL a . n A 1 261 ASP 261 256 256 ASP ASP a . n A 1 262 ASP 262 257 257 ASP ASP a . n A 1 263 LEU 263 258 258 LEU LEU a . n A 1 264 ASP 264 259 259 ASP ASP a . n A 1 265 VAL 265 260 260 VAL VAL a . n A 1 266 THR 266 261 261 THR THR a . n A 1 267 ASP 267 262 262 ASP ASP a . n A 1 268 ASP 268 263 263 ASP ASP a . n A 1 269 GLN 269 264 264 GLN GLN a . n A 1 270 ILE 270 265 265 ILE ILE a . n A 1 271 HIS 271 266 266 HIS HIS a . n A 1 272 PHE 272 267 267 PHE PHE a . n A 1 273 VAL 273 268 268 VAL VAL a . n A 1 274 ILE 274 269 269 ILE ILE a . n A 1 275 ASN 275 270 270 ASN ASN a . n A 1 276 SER 276 271 271 SER SER a . n A 1 277 VAL 277 272 272 VAL VAL a . n A 1 278 GLY 278 273 273 GLY GLY a . n A 1 279 VAL 279 274 274 VAL VAL a . n A 1 280 VAL 280 275 275 VAL VAL a . n A 1 281 GLU 281 276 276 GLU GLU a . n A 1 282 ILE 282 277 277 ILE ILE a . n A 1 283 MET 283 278 278 MET MET a . n A 1 284 LYS 284 279 279 LYS LYS a . n A 1 285 THR 285 280 280 THR THR a . n A 1 286 ILE 286 281 281 ILE ILE a . n A 1 287 THR 287 282 282 THR THR a . n A 1 288 ASP 288 283 283 ASP ASP a . n A 1 289 SER 289 284 284 SER SER a . n A 1 290 LYS 290 285 285 LYS LYS a . n A 1 291 LEU 291 286 286 LEU LEU a . n A 1 292 GLU 292 287 287 GLU GLU a . n A 1 293 MET 293 288 288 MET MET a . n A 1 294 THR 294 289 289 THR THR a . n A 1 295 ARG 295 290 290 ARG ARG a . n A 1 296 GLN 296 291 291 GLN GLN a . n A 1 297 GLN 297 292 292 GLN GLN a . n A 1 298 SER 298 293 293 SER SER a . n A 1 299 LYS 299 294 294 LYS LYS a . n A 1 300 PHE 300 295 295 PHE PHE a . n A 1 301 THR 301 296 296 THR THR a . n A 1 302 GLN 302 297 297 GLN GLN a . n A 1 303 ARG 303 298 298 ARG ARG a . n A 1 304 ASN 304 299 299 ASN ASN a . n A 1 305 PRO 305 300 300 PRO PRO a . n A 1 306 ILE 306 301 301 ILE ILE a . n A 1 307 ILE 307 302 302 ILE ILE a . n A 1 308 ASP 308 303 303 ASP ASP a . n A 1 309 ALA 309 304 304 ALA ALA a . n A 1 310 ASP 310 305 305 ASP ASP a . n A 1 311 ASP 311 306 306 ASP ASP a . n A 1 312 ASN 312 307 307 ASN ASN a . n A 1 313 VAL 313 308 308 VAL VAL a . n A 1 314 ASP 314 309 309 ASP ASP a . n A 1 315 GLU 315 310 310 GLU GLU a . n A 1 316 ASP 316 311 311 ASP ASP a . n A 1 317 GLY 317 312 312 GLY GLY a . n A 1 318 MET 318 313 313 MET MET a . n A 1 319 VAL 319 314 314 VAL VAL a . n A 1 320 VAL 320 315 315 VAL VAL a . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 401 316 GDP GDP a . C 3 MG 1 402 317 MG MG a . # _cell.entry_id 3J5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J5V _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3J5V _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine.entry_id 3J5V _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work ? _refine.ls_d_res_high 7.1 _refine.ls_d_res_low ? _refine.ls_number_reflns_obs ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2406 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2435 _refine_hist.d_res_high 7.1 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3J5V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3J5V _struct.title 'PhuZ201 filament' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J5V _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'PhuZ, tubulin, FtsZ, filament, bacteriophage, cytoskeleton, bacteriophage centering function, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B3FK34_9CAUD _struct_ref.pdbx_db_accession B3FK34 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVKVCLIFAGGTGMNVATKLVDLGEAVHCFDTCDKNVVDVHRSVNVTLTKGTRGAGGNRKVILPLVRPQIPALMDTIPEA DFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNTQGRSY ESINDEIAEKIRKVVLLVNQNHGRLDVHDVANWVRFTDKHNYLIPQVCELHIETTRKDAENVPEAISQLSLYLDPSKEVA FGTPIYRKVGIMKVDDLDVTDDQIHFVINSVGVVEIMKTITDSKLEMTRQQSKFTQRNPIIDADDNVDEDGMVV ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3J5V _struct_ref_seq.pdbx_strand_id a _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 320 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B3FK34 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 315 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3J5V GLY a 1 ? UNP B3FK34 ? ? 'expression tag' -4 1 1 3J5V SER a 2 ? UNP B3FK34 ? ? 'expression tag' -3 2 1 3J5V HIS a 3 ? UNP B3FK34 ? ? 'expression tag' -2 3 1 3J5V MET a 4 ? UNP B3FK34 ? ? 'expression tag' -1 4 1 3J5V ALA a 5 ? UNP B3FK34 ? ? 'expression tag' 0 5 1 3J5V SER a 6 ? UNP B3FK34 ? ? 'expression tag' 1 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 9 2 'helical asymmetric unit' ? monomeric 1 3 'helical asymmetric unit, std helical frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-9)' A,B,C 2 5 A,B,C 3 H A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.27160843 -0.96240785 0.00000000 0.00000 0.96240785 -0.27160843 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -57.68000 2 'helical symmetry operation' ? ? 0.98267755 0.18532361 0.00000000 0.00000 -0.18532361 0.98267755 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -43.26000 3 'helical symmetry operation' ? ? -0.60348636 0.79737332 0.00000000 0.00000 -0.79737332 -0.60348636 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.84000 4 'helical symmetry operation' ? ? -0.44526040 -0.89540113 0.00000000 0.00000 0.89540113 -0.44526040 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.42000 5 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 6 'helical symmetry operation' ? ? -0.44526040 0.89540113 0.00000000 0.00000 -0.89540113 -0.44526040 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.42000 7 'helical symmetry operation' ? ? -0.60348636 -0.79737332 0.00000000 0.00000 0.79737332 -0.60348636 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.84000 8 'helical symmetry operation' ? ? 0.98267755 -0.18532361 0.00000000 0.00000 0.18532361 0.98267755 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 43.26000 9 'helical symmetry operation' ? ? -0.27160843 0.96240785 0.00000000 0.00000 -0.96240785 -0.27160843 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 57.68000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? THR A 24 ? GLY a 11 THR a 19 1 ? 9 HELX_P HELX_P2 2 LYS A 25 ? GLU A 31 ? LYS a 20 GLU a 26 5 ? 7 HELX_P HELX_P3 3 VAL A 44 ? VAL A 50 ? VAL a 39 VAL a 45 5 ? 7 HELX_P HELX_P4 4 ASN A 64 ? ARG A 73 ? ASN a 59 ARG a 68 1 ? 10 HELX_P HELX_P5 5 GLN A 75 ? THR A 82 ? GLN a 70 THR a 77 1 ? 8 HELX_P HELX_P6 6 SER A 99 ? ARG A 114 ? SER a 94 ARG a 109 1 ? 16 HELX_P HELX_P7 7 SER A 128 ? HIS A 150 ? SER a 123 HIS a 145 1 ? 23 HELX_P HELX_P8 8 SER A 165 ? VAL A 184 ? SER a 160 VAL a 179 1 ? 20 HELX_P HELX_P9 9 ASP A 192 ? ARG A 201 ? ASP a 187 ARG a 196 1 ? 10 HELX_P HELX_P10 10 PHE A 202 ? LYS A 205 ? PHE a 197 LYS a 200 5 ? 4 HELX_P HELX_P11 11 THR A 221 ? ASN A 227 ? THR a 216 ASN a 222 1 ? 7 HELX_P HELX_P12 12 ASP A 240 ? GLU A 244 ? ASP a 235 GLU a 239 5 ? 5 HELX_P HELX_P13 13 GLY A 278 ? LYS A 299 ? GLY a 273 LYS a 294 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GDP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id O2B _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id MG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id a _struct_conn.ptnr1_auth_comp_id GDP _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr2_auth_asym_id a _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.214 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 51 ? LEU A 54 ? ASN a 46 LEU a 49 A 2 VAL A 33 ? ASP A 37 ? VAL a 28 ASP a 32 A 3 CYS A 11 ? ALA A 15 ? CYS a 6 ALA a 10 A 4 TYR A 89 ? SER A 94 ? TYR a 84 SER a 89 A 5 PHE A 118 ? GLY A 124 ? PHE a 113 GLY a 119 A 6 ILE A 153 ? PRO A 159 ? ILE a 148 PRO a 154 A 7 VAL A 213 ? GLU A 219 ? VAL a 208 GLU a 214 A 8 GLN A 269 ? ASN A 275 ? GLN a 264 ASN a 270 A 9 SER A 233 ? TYR A 238 ? SER a 228 TYR a 233 A 10 TYR A 252 ? ILE A 257 ? TYR a 247 ILE a 252 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 53 ? O THR a 48 N CYS A 35 ? N CYS a 30 A 2 3 O HIS A 34 ? O HIS a 29 N LEU A 12 ? N LEU a 7 A 3 4 N ILE A 13 ? N ILE a 8 O ILE A 90 ? O ILE a 85 A 4 5 N VAL A 91 ? N VAL a 86 O PHE A 121 ? O PHE a 116 A 5 6 N SER A 120 ? N SER a 115 O ASN A 156 ? O ASN a 151 A 6 7 N VAL A 155 ? N VAL a 150 O CYS A 214 ? O CYS a 209 A 7 8 N GLU A 219 ? N GLU a 214 O HIS A 271 ? O HIS a 266 A 8 9 O PHE A 272 ? O PHE a 267 N LEU A 235 ? N LEU a 230 A 9 10 N SER A 236 ? N SER a 231 O GLY A 256 ? O GLY a 251 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software a GDP 401 ? 18 'BINDING SITE FOR RESIDUE GDP a 401' AC2 Software a MG 402 ? 1 'BINDING SITE FOR RESIDUE MG a 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLY A 16 ? GLY a 11 . ? 1_555 ? 2 AC1 18 GLY A 17 ? GLY a 12 . ? 1_555 ? 3 AC1 18 THR A 18 ? THR a 13 . ? 1_555 ? 4 AC1 18 ASN A 21 ? ASN a 16 . ? 1_555 ? 5 AC1 18 SER A 94 ? SER a 89 . ? 1_555 ? 6 AC1 18 GLY A 97 ? GLY a 92 . ? 1_555 ? 7 AC1 18 GLY A 98 ? GLY a 93 . ? 1_555 ? 8 AC1 18 SER A 99 ? SER a 94 . ? 1_555 ? 9 AC1 18 GLY A 100 ? GLY a 95 . ? 1_555 ? 10 AC1 18 VAL A 123 ? VAL a 118 . ? 1_555 ? 11 AC1 18 ALA A 125 ? ALA a 120 . ? 1_555 ? 12 AC1 18 GLU A 127 ? GLU a 122 . ? 1_555 ? 13 AC1 18 ASN A 131 ? ASN a 126 . ? 1_555 ? 14 AC1 18 ASN A 160 ? ASN a 155 . ? 1_555 ? 15 AC1 18 TYR A 166 ? TYR a 161 . ? 1_555 ? 16 AC1 18 ILE A 169 ? ILE a 164 . ? 1_555 ? 17 AC1 18 ASN A 170 ? ASN a 165 . ? 1_555 ? 18 AC1 18 MG C . ? MG a 402 . ? 1_555 ? 19 AC2 1 GDP B . ? GDP a 401 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O a THR 289 ? ? OG a SER 293 ? ? 2.03 2 1 O a SER 293 ? ? N a PHE 295 ? ? 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O a ASP 306 ? ? C a ASP 306 ? ? N a ASN 307 ? A 134.34 122.70 11.64 1.60 Y 2 1 O a ASP 306 ? ? C a ASP 306 ? ? N a ASN 307 ? B 133.55 122.70 10.85 1.60 Y 3 1 O a ASN 307 ? A C a ASN 307 ? A N a VAL 308 ? ? 112.66 122.70 -10.04 1.60 Y 4 1 O a ASN 307 ? B C a ASN 307 ? B N a VAL 308 ? ? 113.01 122.70 -9.69 1.60 Y 5 1 C a ASN 307 ? A N a VAL 308 ? ? CA a VAL 308 ? ? 138.26 121.70 16.56 2.50 Y 6 1 C a ASN 307 ? B N a VAL 308 ? ? CA a VAL 308 ? ? 139.06 121.70 17.36 2.50 Y 7 1 N a GLU 310 ? ? CA a GLU 310 ? A C a GLU 310 ? ? 128.85 111.00 17.85 2.70 N 8 1 N a GLU 310 ? ? CA a GLU 310 ? B C a GLU 310 ? ? 128.87 111.00 17.87 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG a 185 ? ? 76.16 -9.53 2 1 ARG a 196 ? ? -97.48 52.74 3 1 HIS a 201 ? ? -108.38 76.36 4 1 HIS a 201 ? ? -108.38 76.29 5 1 SER a 271 ? ? -145.60 -9.31 6 1 VAL a 272 ? ? -85.13 34.54 7 1 LYS a 294 ? ? -45.20 66.64 8 1 THR a 296 ? ? -157.76 88.19 9 1 ALA a 304 ? ? -62.32 0.96 # _pdbx_helical_symmetry.entry_id 3J5V _pdbx_helical_symmetry.number_of_operations 9 _pdbx_helical_symmetry.rotation_per_n_subunits -116.440000 _pdbx_helical_symmetry.rise_per_n_subunits 14.420000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J5V _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria cross-correlation _em_3d_fitting.details ;METHOD--Flexible fitting DETAILS--Flexible fitting applied to C-terminus (residues 273-315) ; _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3R4V _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3R4V # _em_3d_reconstruction.entry_id 3J5V _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Helical reconstruction' _em_3d_reconstruction.nominal_pixel_size 1.20398 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 7.1 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'A modified version of SPIDER program was used for the reconstruction. Helical symmetry search was performed with hsearch_lorentz.' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 23243 _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '250 mM KCl, 50 mM HEPES pH 7.4, 1 mM MgCl2, 10% glycerol, 1mM DTT' _em_buffer.pH 8 _em_buffer.details '250 mM KCl, 50 mM HEPES pH 7.4, 1 mM MgCl2, 10% glycerol, 1mM DTT' # _em_entity_assembly.id 1 _em_entity_assembly.name 'PhuZ filament' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 3J5V _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 461 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 3J5V _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2011-11-21 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 2500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 62000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'C-FLAT holey carbon grid, 200 mesh copper grid' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3J5V _em_vitrification.id 1 _em_vitrification.details 'Blotted 2 seconds before plunging in liquid ethane (FEI VITROBOT MARK III)' _em_vitrification.citation_id ? _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3J5V _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 a GLY -4 ? A GLY 1 2 1 Y 1 a SER -3 ? A SER 2 3 1 Y 1 a HIS -2 ? A HIS 3 4 1 Y 1 a MET -1 ? A MET 4 5 1 Y 1 a ALA 0 ? A ALA 5 6 1 Y 1 a SER 1 ? A SER 6 7 1 Y 1 a GLY 55 ? A GLY 60 8 1 Y 1 a ALA 56 ? A ALA 61 9 1 Y 1 a GLY 57 ? A GLY 62 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 ILE N N N N 201 ILE CA C N S 202 ILE C C N N 203 ILE O O N N 204 ILE CB C N S 205 ILE CG1 C N N 206 ILE CG2 C N N 207 ILE CD1 C N N 208 ILE OXT O N N 209 ILE H H N N 210 ILE H2 H N N 211 ILE HA H N N 212 ILE HB H N N 213 ILE HG12 H N N 214 ILE HG13 H N N 215 ILE HG21 H N N 216 ILE HG22 H N N 217 ILE HG23 H N N 218 ILE HD11 H N N 219 ILE HD12 H N N 220 ILE HD13 H N N 221 ILE HXT H N N 222 LEU N N N N 223 LEU CA C N S 224 LEU C C N N 225 LEU O O N N 226 LEU CB C N N 227 LEU CG C N N 228 LEU CD1 C N N 229 LEU CD2 C N N 230 LEU OXT O N N 231 LEU H H N N 232 LEU H2 H N N 233 LEU HA H N N 234 LEU HB2 H N N 235 LEU HB3 H N N 236 LEU HG H N N 237 LEU HD11 H N N 238 LEU HD12 H N N 239 LEU HD13 H N N 240 LEU HD21 H N N 241 LEU HD22 H N N 242 LEU HD23 H N N 243 LEU HXT H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 MG MG MG N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 THR N CA sing N N 333 THR N H sing N N 334 THR N H2 sing N N 335 THR CA C sing N N 336 THR CA CB sing N N 337 THR CA HA sing N N 338 THR C O doub N N 339 THR C OXT sing N N 340 THR CB OG1 sing N N 341 THR CB CG2 sing N N 342 THR CB HB sing N N 343 THR OG1 HG1 sing N N 344 THR CG2 HG21 sing N N 345 THR CG2 HG22 sing N N 346 THR CG2 HG23 sing N N 347 THR OXT HXT sing N N 348 TRP N CA sing N N 349 TRP N H sing N N 350 TRP N H2 sing N N 351 TRP CA C sing N N 352 TRP CA CB sing N N 353 TRP CA HA sing N N 354 TRP C O doub N N 355 TRP C OXT sing N N 356 TRP CB CG sing N N 357 TRP CB HB2 sing N N 358 TRP CB HB3 sing N N 359 TRP CG CD1 doub Y N 360 TRP CG CD2 sing Y N 361 TRP CD1 NE1 sing Y N 362 TRP CD1 HD1 sing N N 363 TRP CD2 CE2 doub Y N 364 TRP CD2 CE3 sing Y N 365 TRP NE1 CE2 sing Y N 366 TRP NE1 HE1 sing N N 367 TRP CE2 CZ2 sing Y N 368 TRP CE3 CZ3 doub Y N 369 TRP CE3 HE3 sing N N 370 TRP CZ2 CH2 doub Y N 371 TRP CZ2 HZ2 sing N N 372 TRP CZ3 CH2 sing Y N 373 TRP CZ3 HZ3 sing N N 374 TRP CH2 HH2 sing N N 375 TRP OXT HXT sing N N 376 TYR N CA sing N N 377 TYR N H sing N N 378 TYR N H2 sing N N 379 TYR CA C sing N N 380 TYR CA CB sing N N 381 TYR CA HA sing N N 382 TYR C O doub N N 383 TYR C OXT sing N N 384 TYR CB CG sing N N 385 TYR CB HB2 sing N N 386 TYR CB HB3 sing N N 387 TYR CG CD1 doub Y N 388 TYR CG CD2 sing Y N 389 TYR CD1 CE1 sing Y N 390 TYR CD1 HD1 sing N N 391 TYR CD2 CE2 doub Y N 392 TYR CD2 HD2 sing N N 393 TYR CE1 CZ doub Y N 394 TYR CE1 HE1 sing N N 395 TYR CE2 CZ sing Y N 396 TYR CE2 HE2 sing N N 397 TYR CZ OH sing N N 398 TYR OH HH sing N N 399 TYR OXT HXT sing N N 400 VAL N CA sing N N 401 VAL N H sing N N 402 VAL N H2 sing N N 403 VAL CA C sing N N 404 VAL CA CB sing N N 405 VAL CA HA sing N N 406 VAL C O doub N N 407 VAL C OXT sing N N 408 VAL CB CG1 sing N N 409 VAL CB CG2 sing N N 410 VAL CB HB sing N N 411 VAL CG1 HG11 sing N N 412 VAL CG1 HG12 sing N N 413 VAL CG1 HG13 sing N N 414 VAL CG2 HG21 sing N N 415 VAL CG2 HG22 sing N N 416 VAL CG2 HG23 sing N N 417 VAL OXT HXT sing N N 418 # _em_ctf_correction.id 1 _em_ctf_correction.details 'Whole micrograph' _em_ctf_correction.type . # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.value 0.034621 _em_entity_assembly_molwt.units MEGADALTONS # _em_helical_entity.id 1 _em_helical_entity.angular_rotation_per_subunit -116.44 _em_helical_entity.axial_rise_per_subunit 14.42 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? _em_helical_entity.image_processing_id 1 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F816 (8k x 8k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 Coot ? 'MODEL FITTING' ? ? 2 'UCSF Chimera' ? 'MODEL FITTING' ? ? 3 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.7 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R4V # _atom_sites.entry_id 3J5V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_