HEADER TRANSFERASE/DNA COMPLEX 10-SEP-09 3JSM TITLE K65R MUTANT HIV-1 REVERSE TRANSCRIPTASE CROSS-LINKED TO DS-DNA AND TITLE 2 COMPLEXED WITH TENOFOVIR-DIPHOSPHATE AS THE INCOMING NUCLEOTIDE TITLE 3 SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C COMPND 4 P*TP*GP*TP*G)-3'); COMPND 5 CHAIN: T; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG) COMPND 10 P*CP*GP*CP*CP*(DDG))-3'); COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT; COMPND 15 CHAIN: A; COMPND 16 EC: 2.7.7.49; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 21 CHAIN: B; COMPND 22 EC: 2.7.7.49; COMPND 23 ENGINEERED: YES; COMPND 24 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY MODIFIED WITH THIOL-DGMP AND ENZYMATICALLY SOURCE 4 TERMINATED WITH DDGTP; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 9 ORGANISM_COMMON: HIV-1; SOURCE 10 ORGANISM_TAXID: 11678; SOURCE 11 STRAIN: BH10; SOURCE 12 GENE: GAG-POL, POL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 18 ORGANISM_COMMON: HIV-1; SOURCE 19 ORGANISM_TAXID: 11678; SOURCE 20 STRAIN: BH10; SOURCE 21 GENE: GAG-POL, POL; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA KEYWDS HIV-1 REVERSE TRANSCRIPTASE, TENOFOVIR, RT-DNA COMPLEX, TRANSFERASE- KEYWDS 2 DNA COMPLEX, DRUG RESISTANCE MUTATION, AIDS, DNA RECOMBINATION, DNA- KEYWDS 3 DIRECTED DNA POLYMERASE, RNASE H, HYDROLASE, LIPOPROTEIN, MAGNESIUM, KEYWDS 4 MEMBRANE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 5 NUCLEOTIDYLTRANSFERASE, RNA-DIRECTED DNA POLYMERASE TRANSFERASE, KEYWDS 6 TRANSFERASE-DNA COMPLEX COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.DAS,E.ARNOLD REVDAT 6 06-SEP-23 3JSM 1 REMARK REVDAT 5 13-OCT-21 3JSM 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3JSM 1 VERSN REVDAT 3 15-DEC-09 3JSM 1 JRNL REVDAT 2 20-OCT-09 3JSM 1 LINK REVDAT 1 29-SEP-09 3JSM 0 JRNL AUTH K.DAS,R.P.BANDWAR,K.L.WHITE,J.Y.FENG,S.G.SARAFIANOS,S.TUSKE, JRNL AUTH 2 X.TU,A.D.CLARK,P.L.BOYER,X.HOU,B.L.GAFFNEY,R.A.JONES, JRNL AUTH 3 M.D.MILLER,S.H.HUGHES,E.ARNOLD JRNL TITL STRUCTURAL BASIS FOR THE ROLE OF THE K65R MUTATION IN HIV-1 JRNL TITL 2 REVERSE TRANSCRIPTASE POLYMERIZATION, EXCISION ANTAGONISM, JRNL TITL 3 AND TENOFOVIR RESISTANCE. JRNL REF J.BIOL.CHEM. V. 284 35092 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19812032 JRNL DOI 10.1074/JBC.M109.022525 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.TUSKE,S.G.SARAFIANOS,A.D.CLARK JR.,J.DING,L.K.NAEGER, REMARK 1 AUTH 2 K.L.WHITE,M.D.MILLER,C.S.GIBBS,P.L.BOYER,P.CLARK,G.WANG, REMARK 1 AUTH 3 B.L.GAFFNEY,R.A.JONES,D.M.JERINA,S.H.HUGHES,E.ARNOLD REMARK 1 TITL STRUCTURES OF HIV-1 RT-DNA COMPLEXES BEFORE AND AFTER REMARK 1 TITL 2 INCORPORATION OF THE ANTI-AIDS DRUG TENOFOVIR REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 11 469 2004 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 15107837 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4226829.050 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 49494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7115 REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7913 REMARK 3 NUCLEIC ACID ATOMS : 901 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.21000 REMARK 3 B22 (A**2) : 7.21000 REMARK 3 B33 (A**2) : -14.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM SIGMAA (A) : 0.75 REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 41.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : TFV_MRG_SUC.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : TFV_MRG_SUC.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3JSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49501 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1T05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100 MM AMMONIUM SULFATE, REMARK 280 20 MM MGCL2, 5% GLYCEROL, 5% SUCROSE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.81333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.62667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 103.62667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.81333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA T 701 REMARK 465 DT T 726 REMARK 465 DG T 727 REMARK 465 DA P 802 REMARK 465 GLY A 555 REMARK 465 ILE A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 LEU B 429 REMARK 465 GLY B 430 REMARK 465 GLY B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 702 P OP1 OP2 REMARK 470 DC P 803 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC P 803 O3' DA P 804 P -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 717 C3' - O3' - P ANGL. DEV. = -10.6 DEGREES REMARK 500 DA T 718 O3' - P - OP2 ANGL. DEV. = 11.8 DEGREES REMARK 500 DA T 718 O3' - P - OP1 ANGL. DEV. = -19.8 DEGREES REMARK 500 DG T 719 O3' - P - OP2 ANGL. DEV. = -19.8 DEGREES REMARK 500 DG T 719 O3' - P - OP1 ANGL. DEV. = 10.0 DEGREES REMARK 500 DA P 804 O3' - P - O5' ANGL. DEV. = 11.6 DEGREES REMARK 500 DG P 805 O3' - P - OP1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DG P 805 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT P 806 O3' - P - OP1 ANGL. DEV. = 14.2 DEGREES REMARK 500 DT P 806 O5' - P - OP1 ANGL. DEV. = -25.2 DEGREES REMARK 500 DT P 806 O5' - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DC P 808 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 MRG P 817 C3' - O3' - P ANGL. DEV. = -15.3 DEGREES REMARK 500 DC P 818 O3' - P - O5' ANGL. DEV. = 17.0 DEGREES REMARK 500 LYS A 219 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 LYS A 223 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 PRO A 392 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO A 412 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 VAL B 60 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 VAL B 241 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 TYR B 339 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO B 392 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ALA B 408 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 129.00 -30.07 REMARK 500 LYS A 20 36.42 -144.68 REMARK 500 PRO A 25 145.58 -38.12 REMARK 500 THR A 27 170.59 -57.35 REMARK 500 ASN A 57 144.81 -172.87 REMARK 500 PHE A 77 26.01 -73.91 REMARK 500 PHE A 116 15.08 -67.32 REMARK 500 ASN A 136 7.72 -64.72 REMARK 500 GLU A 138 -76.31 -123.30 REMARK 500 LEU A 149 107.27 -51.29 REMARK 500 MET A 184 -111.85 68.00 REMARK 500 LYS A 219 13.53 -158.88 REMARK 500 GLN A 222 -72.00 -113.97 REMARK 500 MET A 230 15.11 57.11 REMARK 500 ILE A 244 69.66 -116.47 REMARK 500 SER A 268 1.08 -63.61 REMARK 500 ILE A 270 -40.76 -133.56 REMARK 500 LYS A 281 -33.83 -36.97 REMARK 500 LEU A 282 6.86 -64.38 REMARK 500 LEU A 289 33.99 -78.77 REMARK 500 THR A 290 -14.17 -143.04 REMARK 500 ARG A 307 -26.22 -38.90 REMARK 500 GLN A 343 -35.44 -133.47 REMARK 500 PRO A 345 127.63 -39.67 REMARK 500 PHE A 346 -17.63 79.76 REMARK 500 LYS A 347 76.29 -104.60 REMARK 500 ILE A 393 119.27 -162.11 REMARK 500 LYS A 395 -5.05 -57.99 REMARK 500 THR A 397 -36.79 -35.63 REMARK 500 PRO A 412 -168.87 -70.43 REMARK 500 PRO A 420 161.30 -44.18 REMARK 500 TYR A 427 162.23 173.95 REMARK 500 LYS A 431 48.78 -106.70 REMARK 500 GLU A 432 121.41 -178.97 REMARK 500 PRO A 433 145.94 -37.13 REMARK 500 VAL A 435 155.79 -46.44 REMARK 500 THR A 450 -177.30 -68.96 REMARK 500 LYS A 451 -76.37 -76.51 REMARK 500 LEU A 452 -165.41 -75.55 REMARK 500 ASN A 471 15.21 59.09 REMARK 500 LYS A 476 -5.04 -50.18 REMARK 500 ALA A 485 -0.26 -48.03 REMARK 500 ASP A 488 21.52 -77.60 REMARK 500 LEU A 491 -34.49 -37.65 REMARK 500 LYS A 530 127.39 -171.86 REMARK 500 PRO B 4 86.73 -59.24 REMARK 500 ILE B 5 -168.13 -108.46 REMARK 500 GLU B 6 75.21 -151.88 REMARK 500 LYS B 13 167.35 -43.83 REMARK 500 PRO B 25 138.47 -36.62 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG T 703 0.05 SIDE CHAIN REMARK 500 DG T 704 0.06 SIDE CHAIN REMARK 500 DG T 714 0.06 SIDE CHAIN REMARK 500 DG P 815 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 VAL A 111 O 79.2 REMARK 620 3 ASP A 185 OD2 103.9 85.2 REMARK 620 4 TNV A 823 O1A 106.4 161.6 76.4 REMARK 620 5 TNV A 823 O2B 169.1 94.4 84.2 82.4 REMARK 620 6 TNV A 823 O1G 88.0 86.4 164.0 111.0 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 443 OD1 49.6 REMARK 620 3 ASP A 498 OD2 139.4 126.9 REMARK 620 4 ASP A 498 OD1 136.8 89.0 52.3 REMARK 620 5 HOH A 561 O 106.0 132.6 98.3 112.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TNV A 823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 560 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T05 RELATED DB: PDB REMARK 900 RELATED ID: 1RTD RELATED DB: PDB REMARK 900 RELATED ID: 3JYT RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE ROLE OF THE K65R MUTATION IN HIV-1 REVERSE REMARK 900 TRANSCRIPTASE POLYMERIZATION, EXCISION ANTAGONISM, AND TENOFOVIR REMARK 900 RESISTANCE DBREF 3JSM A 1 558 UNP P03366 POL_HV1B1 600 1157 DBREF 3JSM B 1 429 UNP P03366 POL_HV1B1 600 1028 DBREF 3JSM T 701 727 PDB 3JSM 3JSM 701 727 DBREF 3JSM P 802 822 PDB 3JSM 3JSM 802 822 SEQADV 3JSM ARG A 65 UNP P03366 LYS 664 ENGINEERED MUTATION SEQADV 3JSM CYS A 258 UNP P03366 GLN 857 ENGINEERED MUTATION SEQADV 3JSM SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 3JSM SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 3JSM GLY B 430 UNP P03366 EXPRESSION TAG SEQADV 3JSM GLY B 431 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 432 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 433 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 434 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 435 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 436 UNP P03366 EXPRESSION TAG SEQADV 3JSM HIS B 437 UNP P03366 EXPRESSION TAG SEQRES 1 T 27 DA DT DG DG DT DC DG DG DC DG DC DC DC SEQRES 2 T 27 DG DA DA DC DA DG DG DG DA DC DT DG DT SEQRES 3 T 27 DG SEQRES 1 P 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 P 21 DG DG MRG DC DG DC DC DDG SEQRES 1 A 558 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 558 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 558 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 558 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 558 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS ARG SEQRES 6 A 558 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 558 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 558 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 558 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 558 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 558 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 558 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 558 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 558 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 558 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 558 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 558 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 558 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 558 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 558 GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS LYS LEU SEQRES 21 A 558 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 558 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 558 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 558 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 558 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 558 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 558 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 558 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 558 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 558 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 558 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 558 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 558 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 558 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 558 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 558 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 558 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 558 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 558 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 558 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 558 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 558 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 558 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 1 B 437 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 437 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 437 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 437 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 437 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 437 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 437 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 437 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 437 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 437 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 437 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 437 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 437 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 437 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 437 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 437 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 437 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 437 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 437 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 437 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 437 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 437 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 437 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 437 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 437 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 437 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 437 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 437 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 437 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 437 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 437 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 437 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 437 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 B 437 GLY GLY HIS HIS HIS HIS HIS HIS MODRES 3JSM MRG P 817 DG MODRES 3JSM DDG P 822 DG HET MRG P 817 26 HET DDG P 822 21 HET TNV A 823 27 HET MG A 600 1 HET MG A 601 1 HET SO4 A 559 5 HET SO4 A 560 5 HETNAM MRG N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'- HETNAM 2 MRG MONOPHOSPHATE HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM TNV [2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYL- HETNAM 2 TNV TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN TNV TENOFOVIR-DIPHOSPHATE FORMUL 2 MRG C13 H20 N5 O7 P S FORMUL 2 DDG C10 H14 N5 O6 P FORMUL 5 TNV C9 H16 N5 O10 P3 FORMUL 6 MG 2(MG 2+) FORMUL 8 SO4 2(O4 S 2-) FORMUL 10 HOH *(H2 O) HELIX 1 1 THR A 27 GLY A 45 1 19 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 PHE A 124 ALA A 129 5 6 HELIX 6 6 GLY A 155 ASN A 175 1 21 HELIX 7 7 GLU A 194 TRP A 212 1 19 HELIX 8 8 VAL A 254 SER A 268 1 15 HELIX 9 9 VAL A 276 LEU A 282 1 7 HELIX 10 10 THR A 296 LEU A 310 1 15 HELIX 11 11 ASN A 363 GLY A 384 1 22 HELIX 12 12 GLN A 394 TYR A 405 1 12 HELIX 13 13 THR A 473 TYR A 483 1 11 HELIX 14 14 TYR A 483 ASP A 488 1 6 HELIX 15 15 GLN A 500 ALA A 508 1 9 HELIX 16 16 SER A 515 LYS A 528 1 14 HELIX 17 17 GLY A 544 ALA A 554 1 11 HELIX 18 18 THR B 27 LYS B 43 1 17 HELIX 19 19 PHE B 77 LYS B 82 1 6 HELIX 20 20 GLN B 85 GLU B 89 5 5 HELIX 21 21 ALA B 98 LYS B 103 1 6 HELIX 22 22 GLY B 112 VAL B 118 5 7 HELIX 23 23 ASP B 121 LYS B 126 1 6 HELIX 24 24 SER B 134 GLU B 138 5 5 HELIX 25 25 LYS B 154 GLN B 174 1 21 HELIX 26 26 GLU B 194 ARG B 211 1 18 HELIX 27 27 THR B 253 ALA B 267 1 15 HELIX 28 28 VAL B 276 LYS B 281 1 6 HELIX 29 29 GLU B 298 ASN B 306 1 9 HELIX 30 30 ASN B 363 GLY B 384 1 22 HELIX 31 31 GLN B 394 TRP B 402 1 9 HELIX 32 32 THR B 403 TYR B 405 5 3 SHEET 1 A 3 ILE A 47 LYS A 49 0 SHEET 2 A 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 A 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 B 2 VAL A 60 LYS A 64 0 SHEET 2 B 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 C 3 SER A 105 ASP A 110 0 SHEET 2 C 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 C 3 VAL A 179 TYR A 183 -1 N TYR A 183 O ASP A 186 SHEET 1 D 3 PHE A 227 TRP A 229 0 SHEET 2 D 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 D 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 E 2 TRP A 252 THR A 253 0 SHEET 2 E 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 F 5 LYS A 347 TYR A 354 0 SHEET 2 F 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 F 5 ILE A 326 GLY A 333 -1 N GLN A 330 O THR A 338 SHEET 4 F 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 F 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 G 2 HIS A 361 THR A 362 0 SHEET 2 G 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 H 5 GLN A 464 VAL A 467 0 SHEET 2 H 5 GLY A 453 VAL A 458 -1 N ALA A 455 O VAL A 467 SHEET 3 H 5 THR A 439 ALA A 446 -1 N ALA A 445 O LYS A 454 SHEET 4 H 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 H 5 LYS A 530 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 I 2 VAL B 60 ILE B 63 0 SHEET 2 I 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 J 4 VAL B 179 TYR B 183 0 SHEET 2 J 4 ASP B 186 GLY B 190 -1 O ASP B 186 N TYR B 183 SHEET 3 J 4 VAL B 106 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 J 4 GLU B 233 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 K 2 PHE B 130 ILE B 132 0 SHEET 2 K 2 ILE B 142 TYR B 144 -1 O ILE B 142 N ILE B 132 SHEET 1 L 3 ILE B 326 LYS B 331 0 SHEET 2 L 3 TRP B 337 TYR B 342 -1 O TYR B 342 N ILE B 326 SHEET 3 L 3 ASN B 348 TYR B 354 -1 O GLY B 352 N TYR B 339 SHEET 1 M 2 LYS B 388 LEU B 391 0 SHEET 2 M 2 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK O3' DG P 816 P MRG P 817 1555 1555 1.61 LINK O3' MRG P 817 P DC P 818 1555 1555 1.60 LINK S24 MRG P 817 SG CYS A 258 1555 1555 2.01 LINK O3' DC P 821 P DDG P 822 1555 1555 1.60 LINK OD1 ASP A 110 MG MG A 600 1555 1555 2.34 LINK O VAL A 111 MG MG A 600 1555 1555 2.19 LINK OD2 ASP A 185 MG MG A 600 1555 1555 2.28 LINK OD2 ASP A 443 MG MG A 601 1555 1555 2.55 LINK OD1 ASP A 443 MG MG A 601 1555 1555 2.62 LINK OD2 ASP A 498 MG MG A 601 1555 1555 2.39 LINK OD1 ASP A 498 MG MG A 601 1555 1555 2.58 LINK O HOH A 561 MG MG A 601 1555 1555 2.34 LINK MG MG A 600 O1A TNV A 823 1555 1555 2.42 LINK MG MG A 600 O2B TNV A 823 1555 1555 2.29 LINK MG MG A 600 O1G TNV A 823 1555 1555 2.30 CISPEP 1 PRO A 225 PRO A 226 0 -0.25 CISPEP 2 PRO A 420 PRO A 421 0 -1.02 SITE 1 AC1 16 ARG A 65 LYS A 70 ARG A 72 ASP A 110 SITE 2 AC1 16 VAL A 111 GLY A 112 ASP A 113 ALA A 114 SITE 3 AC1 16 TYR A 115 GLN A 151 ASP A 185 LYS A 219 SITE 4 AC1 16 MG A 600 DDG P 822 DT T 705 DC T 706 SITE 1 AC2 4 ASP A 110 VAL A 111 ASP A 185 TNV A 823 SITE 1 AC3 4 ASP A 443 GLU A 478 ASP A 498 HOH A 561 SITE 1 AC4 3 ARG A 65 LYS A 66 ARG A 72 SITE 1 AC5 6 LYS A 102 LYS A 103 VAL A 106 TYR A 188 SITE 2 AC5 6 HIS A 235 TYR A 318 CRYST1 170.310 170.310 155.440 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005872 0.003390 0.000000 0.00000 SCALE2 0.000000 0.006780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006433 0.00000