data_3JTJ # _entry.id 3JTJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JTJ RCSB RCSB055140 WWPDB D_1000055140 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id IDP02355 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3JTJ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Zhou, M.' 2 'Grimshaw, S.' 3 'Anderson, W.F.' 4 'Joachimiak, A.' 5 'Center for Structural Genomics of Infectious Diseases (CSGID)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Yersinia pestis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Zhou, M.' 2 primary 'Grimshaw, S.' 3 primary 'Anderson, W.F.' 4 primary 'Joachimiak, A.' 5 # _cell.length_a 97.058 _cell.length_b 97.058 _cell.length_c 93.626 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3JTJ _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3JTJ _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3-deoxy-manno-octulosonate cytidylyltransferase' 27919.969 1 2.7.7.38 ? ? ? 2 non-polymer syn IMIDAZOLE 69.085 2 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CMP-KDO synthetase, CMP-2-keto-3-deoxyoctulosonic acid synthetase, CKS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SFIAIIPARYASTRLPGKPLADIAGKP(MSE)VVHV(MSE)ERALASGADRVIVATDHPDVVKAVEAAGGEV CLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAG(MSE)ATLAVPIASSEEAFNPNA VKVV(MSE)DAQGYALYFSRATIPWERERFAQSKETIGDCFLRHIGIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWY GEKIHVAVAKAVPAVGVDTQSDLDRVRAI(MSE)LNQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSFIAIIPARYASTRLPGKPLADIAGKPMVVHVMERALASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTE RLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALYFSR ATIPWERERFAQSKETIGDCFLRHIGIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWYGEKIHVAVAKAVPAVGVDTQ SDLDRVRAIMLNQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier IDP02355 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 PHE n 1 7 ILE n 1 8 ALA n 1 9 ILE n 1 10 ILE n 1 11 PRO n 1 12 ALA n 1 13 ARG n 1 14 TYR n 1 15 ALA n 1 16 SER n 1 17 THR n 1 18 ARG n 1 19 LEU n 1 20 PRO n 1 21 GLY n 1 22 LYS n 1 23 PRO n 1 24 LEU n 1 25 ALA n 1 26 ASP n 1 27 ILE n 1 28 ALA n 1 29 GLY n 1 30 LYS n 1 31 PRO n 1 32 MSE n 1 33 VAL n 1 34 VAL n 1 35 HIS n 1 36 VAL n 1 37 MSE n 1 38 GLU n 1 39 ARG n 1 40 ALA n 1 41 LEU n 1 42 ALA n 1 43 SER n 1 44 GLY n 1 45 ALA n 1 46 ASP n 1 47 ARG n 1 48 VAL n 1 49 ILE n 1 50 VAL n 1 51 ALA n 1 52 THR n 1 53 ASP n 1 54 HIS n 1 55 PRO n 1 56 ASP n 1 57 VAL n 1 58 VAL n 1 59 LYS n 1 60 ALA n 1 61 VAL n 1 62 GLU n 1 63 ALA n 1 64 ALA n 1 65 GLY n 1 66 GLY n 1 67 GLU n 1 68 VAL n 1 69 CYS n 1 70 LEU n 1 71 THR n 1 72 ARG n 1 73 ALA n 1 74 ASP n 1 75 HIS n 1 76 GLN n 1 77 SER n 1 78 GLY n 1 79 THR n 1 80 GLU n 1 81 ARG n 1 82 LEU n 1 83 ALA n 1 84 GLU n 1 85 VAL n 1 86 ILE n 1 87 GLU n 1 88 HIS n 1 89 TYR n 1 90 GLY n 1 91 PHE n 1 92 ALA n 1 93 ASP n 1 94 ASP n 1 95 ASP n 1 96 ILE n 1 97 ILE n 1 98 VAL n 1 99 ASN n 1 100 VAL n 1 101 GLN n 1 102 GLY n 1 103 ASP n 1 104 GLU n 1 105 PRO n 1 106 LEU n 1 107 VAL n 1 108 PRO n 1 109 PRO n 1 110 VAL n 1 111 ILE n 1 112 ILE n 1 113 ARG n 1 114 GLN n 1 115 VAL n 1 116 ALA n 1 117 ASP n 1 118 ASN n 1 119 LEU n 1 120 ALA n 1 121 ALA n 1 122 CYS n 1 123 SER n 1 124 ALA n 1 125 GLY n 1 126 MSE n 1 127 ALA n 1 128 THR n 1 129 LEU n 1 130 ALA n 1 131 VAL n 1 132 PRO n 1 133 ILE n 1 134 ALA n 1 135 SER n 1 136 SER n 1 137 GLU n 1 138 GLU n 1 139 ALA n 1 140 PHE n 1 141 ASN n 1 142 PRO n 1 143 ASN n 1 144 ALA n 1 145 VAL n 1 146 LYS n 1 147 VAL n 1 148 VAL n 1 149 MSE n 1 150 ASP n 1 151 ALA n 1 152 GLN n 1 153 GLY n 1 154 TYR n 1 155 ALA n 1 156 LEU n 1 157 TYR n 1 158 PHE n 1 159 SER n 1 160 ARG n 1 161 ALA n 1 162 THR n 1 163 ILE n 1 164 PRO n 1 165 TRP n 1 166 GLU n 1 167 ARG n 1 168 GLU n 1 169 ARG n 1 170 PHE n 1 171 ALA n 1 172 GLN n 1 173 SER n 1 174 LYS n 1 175 GLU n 1 176 THR n 1 177 ILE n 1 178 GLY n 1 179 ASP n 1 180 CYS n 1 181 PHE n 1 182 LEU n 1 183 ARG n 1 184 HIS n 1 185 ILE n 1 186 GLY n 1 187 ILE n 1 188 TYR n 1 189 ALA n 1 190 TYR n 1 191 ARG n 1 192 ALA n 1 193 GLY n 1 194 PHE n 1 195 ILE n 1 196 ARG n 1 197 ARG n 1 198 TYR n 1 199 VAL n 1 200 ASN n 1 201 TRP n 1 202 ALA n 1 203 PRO n 1 204 SER n 1 205 GLN n 1 206 LEU n 1 207 GLU n 1 208 GLN n 1 209 ILE n 1 210 GLU n 1 211 LEU n 1 212 LEU n 1 213 GLU n 1 214 GLN n 1 215 LEU n 1 216 ARG n 1 217 VAL n 1 218 LEU n 1 219 TRP n 1 220 TYR n 1 221 GLY n 1 222 GLU n 1 223 LYS n 1 224 ILE n 1 225 HIS n 1 226 VAL n 1 227 ALA n 1 228 VAL n 1 229 ALA n 1 230 LYS n 1 231 ALA n 1 232 VAL n 1 233 PRO n 1 234 ALA n 1 235 VAL n 1 236 GLY n 1 237 VAL n 1 238 ASP n 1 239 THR n 1 240 GLN n 1 241 SER n 1 242 ASP n 1 243 LEU n 1 244 ASP n 1 245 ARG n 1 246 VAL n 1 247 ARG n 1 248 ALA n 1 249 ILE n 1 250 MSE n 1 251 LEU n 1 252 ASN n 1 253 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'kdsB, y2772, YPO1400, YP_1193' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CO92 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pestis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 214092 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDSB_YERPE _struct_ref.pdbx_db_accession Q8ZGA4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSFIAIIPARYASTRLPGKPLADIAGKPMVVHVMERALASGADRVIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLA EVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAGMATLAVPIASSEEAFNPNAVKVVMDAQGYALYFSRATI PWERERFAQSKETIGDCFLRHIGIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWYGEKIHVAVAKAVPAVGVDTQSDL DRVRAIMLNQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JTJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8ZGA4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JTJ SER A 1 ? UNP Q8ZGA4 ? ? 'EXPRESSION TAG' -2 1 1 3JTJ ASN A 2 ? UNP Q8ZGA4 ? ? 'EXPRESSION TAG' -1 2 1 3JTJ ALA A 3 ? UNP Q8ZGA4 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3JTJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.56 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 73.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '0.2 M calcium chloride, 20% PEG-3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3JTJ _reflns.d_resolution_high 2.180 _reflns.d_resolution_low 43.1 _reflns.number_obs 26852 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_netI_over_sigmaI 10.300 _reflns.pdbx_chi_squared 3.044 _reflns.pdbx_redundancy 16.800 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 26852 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 59.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.18 _reflns_shell.d_res_low 2.22 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.889 _reflns_shell.meanI_over_sigI_obs 2.97 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.101 _reflns_shell.pdbx_redundancy 10.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1310 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3JTJ _refine.ls_d_res_high 2.180 _refine.ls_d_res_low 43.200 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.380 _refine.ls_number_reflns_obs 26816 _refine.ls_number_reflns_all 26816 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.182 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.209 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1346 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 39.689 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.610 _refine.aniso_B[2][2] 1.610 _refine.aniso_B[3][3] -2.410 _refine.aniso_B[1][2] 0.800 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.139 _refine.pdbx_overall_ESU_R_Free 0.132 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 8.180 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 72.75 _refine.B_iso_min 21.67 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1916 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 2038 _refine_hist.d_res_high 2.180 _refine_hist.d_res_low 43.200 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1978 0.019 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1322 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2693 1.565 1.958 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3213 0.952 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 252 5.332 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 89 32.528 23.483 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 317 16.502 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17 17.901 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 307 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2233 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 409 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1249 0.965 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 501 0.237 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2015 1.873 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 729 3.118 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 676 5.133 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.181 _refine_ls_shell.d_res_low 2.238 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 91.850 _refine_ls_shell.number_reflns_R_work 1723 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.243 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1803 _refine_ls_shell.number_reflns_obs 1803 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JTJ _struct.title '3-deoxy-manno-octulosonate cytidylyltransferase from Yersinia pestis' _struct.pdbx_descriptor '3-deoxy-manno-octulosonate cytidylyltransferase (E.C.2.7.7.38)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JTJ _struct_keywords.text ;structural genomics, IDP02355, 3-deoxy-manno-octulosonate cytidylyltransferase, Lipopolysaccharide biosynthesis, Nucleotidyltransferase, Transferase, Center for Structural Genomics of Infectious Diseases, CSGID ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? LEU A 24 ? GLY A 18 LEU A 21 5 ? 4 HELX_P HELX_P2 2 MSE A 32 ? SER A 43 ? MSE A 29 SER A 40 1 ? 12 HELX_P HELX_P3 3 HIS A 54 ? ALA A 64 ? HIS A 51 ALA A 61 1 ? 11 HELX_P HELX_P4 4 SER A 77 ? GLY A 90 ? SER A 74 GLY A 87 1 ? 14 HELX_P HELX_P5 5 PRO A 108 ? CYS A 122 ? PRO A 105 CYS A 119 1 ? 15 HELX_P HELX_P6 6 SER A 135 ? PHE A 140 ? SER A 132 PHE A 137 1 ? 6 HELX_P HELX_P7 7 GLU A 166 ? SER A 173 ? GLU A 163 SER A 170 1 ? 8 HELX_P HELX_P8 8 ALA A 192 ? VAL A 199 ? ALA A 189 VAL A 196 1 ? 8 HELX_P HELX_P9 9 SER A 204 ? LEU A 211 ? SER A 201 LEU A 208 1 ? 8 HELX_P HELX_P10 10 GLN A 214 ? TYR A 220 ? GLN A 211 TYR A 217 1 ? 7 HELX_P HELX_P11 11 THR A 239 ? LEU A 251 ? THR A 236 LEU A 248 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PRO 31 C ? ? ? 1_555 A MSE 32 N ? ? A PRO 28 A MSE 29 1_555 ? ? ? ? ? ? ? 1.314 ? covale2 covale ? ? A MSE 32 C ? ? ? 1_555 A VAL 33 N ? ? A MSE 29 A VAL 30 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A VAL 36 C ? ? ? 1_555 A MSE 37 N ? ? A VAL 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.318 ? covale4 covale ? ? A MSE 37 C ? ? ? 1_555 A GLU 38 N ? ? A MSE 34 A GLU 35 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A GLY 125 C ? ? ? 1_555 A MSE 126 N ? ? A GLY 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? A MSE 126 C ? ? ? 1_555 A ALA 127 N ? ? A MSE 123 A ALA 124 1_555 ? ? ? ? ? ? ? 1.337 ? covale7 covale ? ? A VAL 148 C ? ? ? 1_555 A MSE 149 N ? ? A VAL 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.339 ? covale8 covale ? ? A MSE 149 C ? ? ? 1_555 A ASP 150 N ? ? A MSE 146 A ASP 147 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A ILE 249 C ? ? ? 1_555 A MSE 250 N ? ? A ILE 246 A MSE 247 1_555 ? ? ? ? ? ? ? 1.317 ? covale10 covale ? ? A MSE 250 C ? ? ? 1_555 A LEU 251 N ? ? A MSE 247 A LEU 248 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 163 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 160 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 164 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 161 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 67 ? LEU A 70 ? GLU A 64 LEU A 67 A 2 ARG A 47 ? THR A 52 ? ARG A 44 THR A 49 A 3 ILE A 7 ? ALA A 12 ? ILE A 4 ALA A 9 A 4 ILE A 96 ? ASN A 99 ? ILE A 93 ASN A 96 A 5 LEU A 182 ? ARG A 191 ? LEU A 179 ARG A 188 A 6 MSE A 126 ? PRO A 132 ? MSE A 123 PRO A 129 A 7 HIS A 225 ? VAL A 228 ? HIS A 222 VAL A 225 B 1 ASP A 26 ? ILE A 27 ? ASP A 23 ILE A 24 B 2 LYS A 30 ? PRO A 31 ? LYS A 27 PRO A 28 C 1 LYS A 146 ? MSE A 149 ? LYS A 143 MSE A 146 C 2 ALA A 155 ? SER A 159 ? ALA A 152 SER A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 69 ? O CYS A 66 N VAL A 50 ? N VAL A 47 A 2 3 O ILE A 49 ? O ILE A 46 N ILE A 10 ? N ILE A 7 A 3 4 N ILE A 9 ? N ILE A 6 O VAL A 98 ? O VAL A 95 A 4 5 N ILE A 97 ? N ILE A 94 O TYR A 190 ? O TYR A 187 A 5 6 O ARG A 183 ? O ARG A 180 N VAL A 131 ? N VAL A 128 A 6 7 N THR A 128 ? N THR A 125 O HIS A 225 ? O HIS A 222 B 1 2 N ILE A 27 ? N ILE A 24 O LYS A 30 ? O LYS A 27 C 1 2 N VAL A 148 ? N VAL A 145 O LEU A 156 ? O LEU A 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE IMD A 301' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IMD A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 79 ? THR A 76 . ? 1_555 ? 2 AC1 6 MSE A 126 ? MSE A 123 . ? 1_555 ? 3 AC1 6 TYR A 188 ? TYR A 185 . ? 1_555 ? 4 AC1 6 TYR A 190 ? TYR A 187 . ? 1_555 ? 5 AC1 6 TYR A 198 ? TYR A 195 . ? 1_555 ? 6 AC1 6 GLN A 214 ? GLN A 211 . ? 1_555 ? 7 AC2 3 PRO A 109 ? PRO A 106 . ? 2_654 ? 8 AC2 3 VAL A 199 ? VAL A 196 . ? 1_555 ? 9 AC2 3 HOH D . ? HOH A 322 . ? 1_555 ? # _atom_sites.entry_id 3JTJ _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0.005949 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011897 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010681 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 PHE 6 3 3 PHE PHE A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 ALA 8 5 5 ALA ALA A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 PRO 11 8 8 PRO PRO A . n A 1 12 ALA 12 9 9 ALA ALA A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 TYR 14 11 11 TYR TYR A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 THR 17 14 14 THR THR A . n A 1 18 ARG 18 15 15 ARG ARG A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 PRO 20 17 17 PRO PRO A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 PRO 23 20 20 PRO PRO A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 ASP 26 23 23 ASP ASP A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 LYS 30 27 27 LYS LYS A . n A 1 31 PRO 31 28 28 PRO PRO A . n A 1 32 MSE 32 29 29 MSE MSE A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 HIS 35 32 32 HIS HIS A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 MSE 37 34 34 MSE MSE A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 ARG 39 36 36 ARG ARG A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 GLY 44 41 41 GLY GLY A . n A 1 45 ALA 45 42 42 ALA ALA A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 ARG 47 44 44 ARG ARG A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 VAL 50 47 47 VAL VAL A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 THR 52 49 49 THR THR A . n A 1 53 ASP 53 50 50 ASP ASP A . n A 1 54 HIS 54 51 51 HIS HIS A . n A 1 55 PRO 55 52 52 PRO PRO A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 VAL 58 55 55 VAL VAL A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 ALA 60 57 57 ALA ALA A . n A 1 61 VAL 61 58 58 VAL VAL A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 GLY 65 62 62 GLY GLY A . n A 1 66 GLY 66 63 63 GLY GLY A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 VAL 68 65 65 VAL VAL A . n A 1 69 CYS 69 66 66 CYS CYS A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 ARG 72 69 69 ARG ARG A . n A 1 73 ALA 73 70 70 ALA ALA A . n A 1 74 ASP 74 71 71 ASP ASP A . n A 1 75 HIS 75 72 72 HIS HIS A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 LEU 82 79 79 LEU LEU A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 ILE 86 83 83 ILE ILE A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 HIS 88 85 85 HIS HIS A . n A 1 89 TYR 89 86 86 TYR TYR A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 ASP 93 90 90 ASP ASP A . n A 1 94 ASP 94 91 91 ASP ASP A . n A 1 95 ASP 95 92 92 ASP ASP A . n A 1 96 ILE 96 93 93 ILE ILE A . n A 1 97 ILE 97 94 94 ILE ILE A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 ASN 99 96 96 ASN ASN A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 GLN 101 98 98 GLN GLN A . n A 1 102 GLY 102 99 99 GLY GLY A . n A 1 103 ASP 103 100 100 ASP ASP A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 PRO 105 102 102 PRO PRO A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 PRO 108 105 105 PRO PRO A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 ILE 111 108 108 ILE ILE A . n A 1 112 ILE 112 109 109 ILE ILE A . n A 1 113 ARG 113 110 110 ARG ARG A . n A 1 114 GLN 114 111 111 GLN GLN A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 ASP 117 114 114 ASP ASP A . n A 1 118 ASN 118 115 115 ASN ASN A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 CYS 122 119 119 CYS CYS A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 MSE 126 123 123 MSE MSE A . n A 1 127 ALA 127 124 124 ALA ALA A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 ALA 130 127 127 ALA ALA A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 PRO 132 129 129 PRO PRO A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 SER 135 132 132 SER SER A . n A 1 136 SER 136 133 133 SER SER A . n A 1 137 GLU 137 134 134 GLU GLU A . n A 1 138 GLU 138 135 135 GLU GLU A . n A 1 139 ALA 139 136 136 ALA ALA A . n A 1 140 PHE 140 137 137 PHE PHE A . n A 1 141 ASN 141 138 138 ASN ASN A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 ASN 143 140 140 ASN ASN A . n A 1 144 ALA 144 141 141 ALA ALA A . n A 1 145 VAL 145 142 142 VAL VAL A . n A 1 146 LYS 146 143 143 LYS LYS A . n A 1 147 VAL 147 144 144 VAL VAL A . n A 1 148 VAL 148 145 145 VAL VAL A . n A 1 149 MSE 149 146 146 MSE MSE A . n A 1 150 ASP 150 147 147 ASP ASP A . n A 1 151 ALA 151 148 148 ALA ALA A . n A 1 152 GLN 152 149 149 GLN GLN A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 TYR 154 151 151 TYR TYR A . n A 1 155 ALA 155 152 152 ALA ALA A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 TYR 157 154 154 TYR TYR A . n A 1 158 PHE 158 155 155 PHE PHE A . n A 1 159 SER 159 156 156 SER SER A . n A 1 160 ARG 160 157 157 ARG ARG A . n A 1 161 ALA 161 158 158 ALA ALA A . n A 1 162 THR 162 159 159 THR THR A . n A 1 163 ILE 163 160 160 ILE ILE A . n A 1 164 PRO 164 161 161 PRO PRO A . n A 1 165 TRP 165 162 162 TRP TRP A . n A 1 166 GLU 166 163 163 GLU GLU A . n A 1 167 ARG 167 164 164 ARG ARG A . n A 1 168 GLU 168 165 165 GLU GLU A . n A 1 169 ARG 169 166 166 ARG ARG A . n A 1 170 PHE 170 167 167 PHE PHE A . n A 1 171 ALA 171 168 168 ALA ALA A . n A 1 172 GLN 172 169 169 GLN GLN A . n A 1 173 SER 173 170 170 SER SER A . n A 1 174 LYS 174 171 171 LYS LYS A . n A 1 175 GLU 175 172 172 GLU GLU A . n A 1 176 THR 176 173 173 THR THR A . n A 1 177 ILE 177 174 174 ILE ILE A . n A 1 178 GLY 178 175 175 GLY GLY A . n A 1 179 ASP 179 176 176 ASP ASP A . n A 1 180 CYS 180 177 177 CYS CYS A . n A 1 181 PHE 181 178 178 PHE PHE A . n A 1 182 LEU 182 179 179 LEU LEU A . n A 1 183 ARG 183 180 180 ARG ARG A . n A 1 184 HIS 184 181 181 HIS HIS A . n A 1 185 ILE 185 182 182 ILE ILE A . n A 1 186 GLY 186 183 183 GLY GLY A . n A 1 187 ILE 187 184 184 ILE ILE A . n A 1 188 TYR 188 185 185 TYR TYR A . n A 1 189 ALA 189 186 186 ALA ALA A . n A 1 190 TYR 190 187 187 TYR TYR A . n A 1 191 ARG 191 188 188 ARG ARG A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 GLY 193 190 190 GLY GLY A . n A 1 194 PHE 194 191 191 PHE PHE A . n A 1 195 ILE 195 192 192 ILE ILE A . n A 1 196 ARG 196 193 193 ARG ARG A . n A 1 197 ARG 197 194 194 ARG ARG A . n A 1 198 TYR 198 195 195 TYR TYR A . n A 1 199 VAL 199 196 196 VAL VAL A . n A 1 200 ASN 200 197 197 ASN ASN A . n A 1 201 TRP 201 198 198 TRP TRP A . n A 1 202 ALA 202 199 199 ALA ALA A . n A 1 203 PRO 203 200 200 PRO PRO A . n A 1 204 SER 204 201 201 SER SER A . n A 1 205 GLN 205 202 202 GLN GLN A . n A 1 206 LEU 206 203 203 LEU LEU A . n A 1 207 GLU 207 204 204 GLU GLU A . n A 1 208 GLN 208 205 205 GLN GLN A . n A 1 209 ILE 209 206 206 ILE ILE A . n A 1 210 GLU 210 207 207 GLU GLU A . n A 1 211 LEU 211 208 208 LEU LEU A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 GLU 213 210 210 GLU GLU A . n A 1 214 GLN 214 211 211 GLN GLN A . n A 1 215 LEU 215 212 212 LEU LEU A . n A 1 216 ARG 216 213 213 ARG ARG A . n A 1 217 VAL 217 214 214 VAL VAL A . n A 1 218 LEU 218 215 215 LEU LEU A . n A 1 219 TRP 219 216 216 TRP TRP A . n A 1 220 TYR 220 217 217 TYR TYR A . n A 1 221 GLY 221 218 218 GLY GLY A . n A 1 222 GLU 222 219 219 GLU GLU A . n A 1 223 LYS 223 220 220 LYS LYS A . n A 1 224 ILE 224 221 221 ILE ILE A . n A 1 225 HIS 225 222 222 HIS HIS A . n A 1 226 VAL 226 223 223 VAL VAL A . n A 1 227 ALA 227 224 224 ALA ALA A . n A 1 228 VAL 228 225 225 VAL VAL A . n A 1 229 ALA 229 226 226 ALA ALA A . n A 1 230 LYS 230 227 227 LYS LYS A . n A 1 231 ALA 231 228 228 ALA ALA A . n A 1 232 VAL 232 229 229 VAL VAL A . n A 1 233 PRO 233 230 230 PRO PRO A . n A 1 234 ALA 234 231 231 ALA ALA A . n A 1 235 VAL 235 232 232 VAL VAL A . n A 1 236 GLY 236 233 233 GLY GLY A . n A 1 237 VAL 237 234 234 VAL VAL A . n A 1 238 ASP 238 235 235 ASP ASP A . n A 1 239 THR 239 236 236 THR THR A . n A 1 240 GLN 240 237 237 GLN GLN A . n A 1 241 SER 241 238 238 SER SER A . n A 1 242 ASP 242 239 239 ASP ASP A . n A 1 243 LEU 243 240 240 LEU LEU A . n A 1 244 ASP 244 241 241 ASP ASP A . n A 1 245 ARG 245 242 242 ARG ARG A . n A 1 246 VAL 246 243 243 VAL VAL A . n A 1 247 ARG 247 244 244 ARG ARG A . n A 1 248 ALA 248 245 245 ALA ALA A . n A 1 249 ILE 249 246 246 ILE ILE A . n A 1 250 MSE 250 247 247 MSE MSE A . n A 1 251 LEU 251 248 248 LEU LEU A . n A 1 252 ASN 252 249 249 ASN ASN A . n A 1 253 GLN 253 250 250 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD 1 301 301 IMD IMD A . C 2 IMD 1 302 302 IMD IMD A . D 3 HOH 1 251 1 HOH HOH A . D 3 HOH 2 252 2 HOH HOH A . D 3 HOH 3 253 3 HOH HOH A . D 3 HOH 4 254 4 HOH HOH A . D 3 HOH 5 255 5 HOH HOH A . D 3 HOH 6 256 6 HOH HOH A . D 3 HOH 7 257 7 HOH HOH A . D 3 HOH 8 258 8 HOH HOH A . D 3 HOH 9 259 9 HOH HOH A . D 3 HOH 10 260 10 HOH HOH A . D 3 HOH 11 261 11 HOH HOH A . D 3 HOH 12 262 12 HOH HOH A . D 3 HOH 13 263 13 HOH HOH A . D 3 HOH 14 264 14 HOH HOH A . D 3 HOH 15 265 15 HOH HOH A . D 3 HOH 16 266 16 HOH HOH A . D 3 HOH 17 267 17 HOH HOH A . D 3 HOH 18 268 18 HOH HOH A . D 3 HOH 19 269 19 HOH HOH A . D 3 HOH 20 270 20 HOH HOH A . D 3 HOH 21 271 21 HOH HOH A . D 3 HOH 22 272 22 HOH HOH A . D 3 HOH 23 273 23 HOH HOH A . D 3 HOH 24 274 24 HOH HOH A . D 3 HOH 25 275 25 HOH HOH A . D 3 HOH 26 276 26 HOH HOH A . D 3 HOH 27 277 27 HOH HOH A . D 3 HOH 28 278 28 HOH HOH A . D 3 HOH 29 279 29 HOH HOH A . D 3 HOH 30 280 30 HOH HOH A . D 3 HOH 31 281 31 HOH HOH A . D 3 HOH 32 282 32 HOH HOH A . D 3 HOH 33 283 33 HOH HOH A . D 3 HOH 34 284 34 HOH HOH A . D 3 HOH 35 285 35 HOH HOH A . D 3 HOH 36 286 36 HOH HOH A . D 3 HOH 37 287 37 HOH HOH A . D 3 HOH 38 288 38 HOH HOH A . D 3 HOH 39 289 39 HOH HOH A . D 3 HOH 40 290 40 HOH HOH A . D 3 HOH 41 291 41 HOH HOH A . D 3 HOH 42 292 42 HOH HOH A . D 3 HOH 43 293 43 HOH HOH A . D 3 HOH 44 294 44 HOH HOH A . D 3 HOH 45 295 45 HOH HOH A . D 3 HOH 46 296 46 HOH HOH A . D 3 HOH 47 297 47 HOH HOH A . D 3 HOH 48 298 48 HOH HOH A . D 3 HOH 49 299 49 HOH HOH A . D 3 HOH 50 300 50 HOH HOH A . D 3 HOH 51 303 51 HOH HOH A . D 3 HOH 52 304 52 HOH HOH A . D 3 HOH 53 305 53 HOH HOH A . D 3 HOH 54 306 54 HOH HOH A . D 3 HOH 55 307 55 HOH HOH A . D 3 HOH 56 308 56 HOH HOH A . D 3 HOH 57 309 57 HOH HOH A . D 3 HOH 58 310 58 HOH HOH A . D 3 HOH 59 311 59 HOH HOH A . D 3 HOH 60 312 60 HOH HOH A . D 3 HOH 61 313 61 HOH HOH A . D 3 HOH 62 314 62 HOH HOH A . D 3 HOH 63 315 63 HOH HOH A . D 3 HOH 64 316 64 HOH HOH A . D 3 HOH 65 317 65 HOH HOH A . D 3 HOH 66 318 66 HOH HOH A . D 3 HOH 67 319 67 HOH HOH A . D 3 HOH 68 320 68 HOH HOH A . D 3 HOH 69 321 69 HOH HOH A . D 3 HOH 70 322 70 HOH HOH A . D 3 HOH 71 323 71 HOH HOH A . D 3 HOH 72 324 72 HOH HOH A . D 3 HOH 73 325 73 HOH HOH A . D 3 HOH 74 326 74 HOH HOH A . D 3 HOH 75 327 75 HOH HOH A . D 3 HOH 76 328 76 HOH HOH A . D 3 HOH 77 329 77 HOH HOH A . D 3 HOH 78 330 78 HOH HOH A . D 3 HOH 79 331 79 HOH HOH A . D 3 HOH 80 332 80 HOH HOH A . D 3 HOH 81 333 81 HOH HOH A . D 3 HOH 82 334 82 HOH HOH A . D 3 HOH 83 335 83 HOH HOH A . D 3 HOH 84 336 84 HOH HOH A . D 3 HOH 85 337 85 HOH HOH A . D 3 HOH 86 338 86 HOH HOH A . D 3 HOH 87 339 87 HOH HOH A . D 3 HOH 88 340 88 HOH HOH A . D 3 HOH 89 341 89 HOH HOH A . D 3 HOH 90 342 90 HOH HOH A . D 3 HOH 91 343 91 HOH HOH A . D 3 HOH 92 344 92 HOH HOH A . D 3 HOH 93 345 93 HOH HOH A . D 3 HOH 94 346 94 HOH HOH A . D 3 HOH 95 347 95 HOH HOH A . D 3 HOH 96 348 96 HOH HOH A . D 3 HOH 97 349 97 HOH HOH A . D 3 HOH 98 350 98 HOH HOH A . D 3 HOH 99 351 99 HOH HOH A . D 3 HOH 100 352 100 HOH HOH A . D 3 HOH 101 353 101 HOH HOH A . D 3 HOH 102 354 102 HOH HOH A . D 3 HOH 103 355 103 HOH HOH A . D 3 HOH 104 356 104 HOH HOH A . D 3 HOH 105 357 105 HOH HOH A . D 3 HOH 106 358 106 HOH HOH A . D 3 HOH 107 359 107 HOH HOH A . D 3 HOH 108 360 108 HOH HOH A . D 3 HOH 109 361 109 HOH HOH A . D 3 HOH 110 362 110 HOH HOH A . D 3 HOH 111 363 111 HOH HOH A . D 3 HOH 112 364 112 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 32 A MSE 29 ? MET SELENOMETHIONINE 2 A MSE 37 A MSE 34 ? MET SELENOMETHIONINE 3 A MSE 126 A MSE 123 ? MET SELENOMETHIONINE 4 A MSE 149 A MSE 146 ? MET SELENOMETHIONINE 5 A MSE 250 A MSE 247 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3220 ? 1 MORE -9 ? 1 'SSA (A^2)' 21660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 45.6947 _pdbx_refine_tls.origin_y 39.9149 _pdbx_refine_tls.origin_z 0.5274 _pdbx_refine_tls.T[1][1] 0.0887 _pdbx_refine_tls.T[2][2] 0.1841 _pdbx_refine_tls.T[3][3] 0.0226 _pdbx_refine_tls.T[1][2] 0.0276 _pdbx_refine_tls.T[1][3] 0.0151 _pdbx_refine_tls.T[2][3] 0.0075 _pdbx_refine_tls.L[1][1] 1.2052 _pdbx_refine_tls.L[2][2] 1.1317 _pdbx_refine_tls.L[3][3] 0.7538 _pdbx_refine_tls.L[1][2] -0.5659 _pdbx_refine_tls.L[1][3] 0.5840 _pdbx_refine_tls.L[2][3] -0.3284 _pdbx_refine_tls.S[1][1] 0.0540 _pdbx_refine_tls.S[2][2] -0.1125 _pdbx_refine_tls.S[3][3] 0.0585 _pdbx_refine_tls.S[1][2] 0.0338 _pdbx_refine_tls.S[1][3] 0.0887 _pdbx_refine_tls.S[2][3] -0.1021 _pdbx_refine_tls.S[2][1] -0.0060 _pdbx_refine_tls.S[3][1] 0.0054 _pdbx_refine_tls.S[3][2] 0.1602 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 250 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 301 A 302 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 251 A 364 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 DM . ? ? ? ? phasing ? ? ? 10 SOLVE . ? ? ? ? phasing ? ? ? 11 RESOLVE . ? ? ? ? phasing ? ? ? 12 HKL-3000 . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 2 ? ? OD2 A ASP 43 ? ? 2.11 2 1 O A HOH 252 ? ? O A HOH 348 ? ? 2.13 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 146 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 146 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.720 _pdbx_validate_rmsd_bond.bond_target_value 1.520 _pdbx_validate_rmsd_bond.bond_deviation 0.200 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.030 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 38 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 38 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 38 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.19 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 13.89 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 IMIDAZOLE IMD 3 water HOH #