data_3JX7 # _entry.id 3JX7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JX7 pdb_00003jx7 10.2210/pdb3jx7/pdb NDB NA0170 ? ? RCSB RCSB055272 ? ? WWPDB D_1000055272 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BVS 'Crystal Structure of Bacillus cereus Alkylpurine DNA Glycosylase AlkD' unspecified PDB 3JXZ 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD bound to DNA containing an abasic site (across from T)' unspecified PDB 3JY1 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD bound to DNA containing an abasic site (across from C)' unspecified PDB 3JXY 'Bacillus cereus Alkylpurine DNA Glycosylase AlkD bound to DNA containing a GT mismatch' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JX7 _pdbx_database_status.recvd_initial_deposition_date 2009-09-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rubinson, E.H.' 1 'Eichman, B.F.' 2 # _citation.id primary _citation.title 'An unprecedented nucleic acid capture mechanism for excision of DNA damage.' _citation.journal_abbrev Nature _citation.journal_volume 468 _citation.page_first 406 _citation.page_last 411 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20927102 _citation.pdbx_database_id_DOI 10.1038/nature09428 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rubinson, E.H.' 1 ? primary 'Gowda, A.S.' 2 ? primary 'Spratt, T.E.' 3 ? primary 'Gold, B.' 4 ? primary 'Eichman, B.F.' 5 ? # _cell.entry_id 3JX7 _cell.length_a 37.759 _cell.length_b 92.966 _cell.length_c 47.767 _cell.angle_alpha 90.00 _cell.angle_beta 113.01 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JX7 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'alkylpurine DNA glycosylase AlkD' 27724.082 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3') ; 3725.468 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3') ; 3614.354 1 ? ? ? ? 4 water nat water 18.015 446 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; ;PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAA ALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQ KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(DG)(DA)(DC)(DT)(DZM)(DA)(DC)(DG)(DG)(DG)' CGGACTAACGGG B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DG)(DT)(DT)(DA)(DG)(DT)(DC)(DC)(DG)' CCCGTTAGTCCG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 MET n 1 3 HIS n 1 4 PRO n 1 5 PHE n 1 6 VAL n 1 7 LYS n 1 8 ALA n 1 9 LEU n 1 10 GLN n 1 11 GLU n 1 12 HIS n 1 13 PHE n 1 14 THR n 1 15 ALA n 1 16 HIS n 1 17 GLN n 1 18 ASN n 1 19 PRO n 1 20 GLU n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 PRO n 1 25 MET n 1 26 ALA n 1 27 ARG n 1 28 TYR n 1 29 MET n 1 30 LYS n 1 31 ASN n 1 32 HIS n 1 33 PHE n 1 34 LEU n 1 35 PHE n 1 36 LEU n 1 37 GLY n 1 38 ILE n 1 39 GLN n 1 40 THR n 1 41 PRO n 1 42 GLU n 1 43 ARG n 1 44 ARG n 1 45 GLN n 1 46 LEU n 1 47 LEU n 1 48 LYS n 1 49 ASP n 1 50 ILE n 1 51 ILE n 1 52 GLN n 1 53 ILE n 1 54 HIS n 1 55 THR n 1 56 LEU n 1 57 PRO n 1 58 ASP n 1 59 GLN n 1 60 LYS n 1 61 ASP n 1 62 PHE n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 ILE n 1 67 ARG n 1 68 GLU n 1 69 LEU n 1 70 TRP n 1 71 ASP n 1 72 LEU n 1 73 PRO n 1 74 GLU n 1 75 ARG n 1 76 GLU n 1 77 PHE n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 ALA n 1 82 LEU n 1 83 ASP n 1 84 ILE n 1 85 MET n 1 86 GLN n 1 87 LYS n 1 88 TYR n 1 89 LYS n 1 90 LYS n 1 91 HIS n 1 92 ILE n 1 93 ASN n 1 94 GLU n 1 95 THR n 1 96 HIS n 1 97 ILE n 1 98 PRO n 1 99 PHE n 1 100 LEU n 1 101 GLU n 1 102 GLU n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 THR n 1 107 LYS n 1 108 SER n 1 109 TRP n 1 110 TRP n 1 111 ASP n 1 112 SER n 1 113 VAL n 1 114 ASP n 1 115 SER n 1 116 ILE n 1 117 VAL n 1 118 PRO n 1 119 THR n 1 120 PHE n 1 121 LEU n 1 122 GLY n 1 123 ASP n 1 124 ILE n 1 125 PHE n 1 126 LEU n 1 127 LYS n 1 128 HIS n 1 129 PRO n 1 130 GLU n 1 131 LEU n 1 132 ILE n 1 133 SER n 1 134 ALA n 1 135 TYR n 1 136 ILE n 1 137 PRO n 1 138 LYS n 1 139 TRP n 1 140 ILE n 1 141 ALA n 1 142 SER n 1 143 ASP n 1 144 ASN n 1 145 ILE n 1 146 TRP n 1 147 LEU n 1 148 GLN n 1 149 ARG n 1 150 ALA n 1 151 ALA n 1 152 ILE n 1 153 LEU n 1 154 PHE n 1 155 GLN n 1 156 LEU n 1 157 LYS n 1 158 TYR n 1 159 LYS n 1 160 GLN n 1 161 LYS n 1 162 MET n 1 163 ASP n 1 164 GLU n 1 165 GLU n 1 166 LEU n 1 167 LEU n 1 168 PHE n 1 169 TRP n 1 170 ILE n 1 171 ILE n 1 172 GLY n 1 173 GLN n 1 174 LEU n 1 175 HIS n 1 176 SER n 1 177 SER n 1 178 LYS n 1 179 GLU n 1 180 PHE n 1 181 PHE n 1 182 ILE n 1 183 GLN n 1 184 LYS n 1 185 ALA n 1 186 ILE n 1 187 GLY n 1 188 TRP n 1 189 VAL n 1 190 LEU n 1 191 ARG n 1 192 GLU n 1 193 TYR n 1 194 ALA n 1 195 LYS n 1 196 THR n 1 197 ASN n 1 198 PRO n 1 199 ASP n 1 200 VAL n 1 201 VAL n 1 202 TRP n 1 203 GLU n 1 204 TYR n 1 205 VAL n 1 206 GLN n 1 207 ASN n 1 208 ASN n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 PRO n 1 213 LEU n 1 214 SER n 1 215 LYS n 1 216 ARG n 1 217 GLU n 1 218 ALA n 1 219 ILE n 1 220 LYS n 1 221 HIS n 1 222 ILE n 1 223 LYS n 1 224 GLN n 1 225 ASN n 1 226 TYR n 1 227 GLY n 1 228 ILE n 1 229 ASN n 1 230 ASN n 1 231 GLU n 1 232 LYS n 2 1 DC n 2 2 DG n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DZM n 2 8 DA n 2 9 DC n 2 10 DG n 2 11 DG n 2 12 DG n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DG n 3 5 DT n 3 6 DT n 3 7 DA n 3 8 DG n 3 9 DT n 3 10 DC n 3 11 DC n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AlkD, BC_4913' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 10987' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 Q816E8 1 UNP Q816E8_BACCR 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEK ; ? 2 3JX7 2 PDB 3JX7 1 CGGACTAACGGG ? 3 3JX7 3 PDB 3JX7 1 CCCGTTAGTCCG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JX7 A 2 ? 232 ? Q816E8 1 ? 231 ? 1 231 2 2 3JX7 B 1 ? 12 ? 3JX7 1 ? 12 ? 1 12 3 3 3JX7 C 1 ? 12 ? 3JX7 13 ? 24 ? 13 24 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3JX7 _struct_ref_seq_dif.mon_id PRO _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q816E8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DZM 'DNA linking' n 3-deaza-3-methyladenine '1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine' 'C12 H17 N4 O6 P' 344.260 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JX7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.17 M ammonium acetate, 0.085 M sodium acetate trihydrate pH 4.6, 25.5% PEG 4000, 15% glycerol , VAPOR DIFFUSION, SITTING DROP, temperature 294K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-09-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .97850 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .97850 # _reflns.entry_id 3JX7 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 44 _reflns.d_resolution_high 1.6 _reflns.number_obs 38351 _reflns.number_all 40032 _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value .051 _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.B_iso_Wilson_estimate 17.5 _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 75.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value .247 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3JX7 _refine.ls_number_reflns_obs 38310 _refine.ls_number_reflns_all 38326 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.755 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 95.65 _refine.ls_R_factor_obs 0.1604 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1592 _refine.ls_R_factor_R_free 0.1829 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 1918 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.395 _refine.solvent_model_param_bsol 60.413 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB 3BVS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.15 _refine.pdbx_overall_phase_error 18.29 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1956 _refine_hist.pdbx_number_atoms_nucleic_acid 487 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 446 _refine_hist.number_atoms_total 2889 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 34.755 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2572 'X-RAY DIFFRACTION' ? f_angle_d 1.091 ? ? 3576 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.666 ? ? 987 'X-RAY DIFFRACTION' ? f_chiral_restr 0.069 ? ? 385 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 368 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5987 1.6387 1974 0.2006 73.00 0.2252 . . 93 . . . . 'X-RAY DIFFRACTION' . 1.6387 1.6830 2201 0.1815 82.00 0.2215 . . 116 . . . . 'X-RAY DIFFRACTION' . 1.6830 1.7325 2461 0.1670 91.00 0.2129 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.7325 1.7884 2619 0.1660 97.00 0.2194 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.7884 1.8523 2698 0.1608 100.00 0.1905 . . 132 . . . . 'X-RAY DIFFRACTION' . 1.8523 1.9265 2725 0.1546 100.00 0.1835 . . 135 . . . . 'X-RAY DIFFRACTION' . 1.9265 2.0142 2710 0.1488 100.00 0.1862 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.0142 2.1203 2684 0.1460 100.00 0.1687 . . 160 . . . . 'X-RAY DIFFRACTION' . 2.1203 2.2532 2723 0.1391 100.00 0.1812 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.2532 2.4271 2716 0.1469 100.00 0.1696 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.4271 2.6713 2738 0.1540 100.00 0.1683 . . 151 . . . . 'X-RAY DIFFRACTION' . 2.6713 3.0576 2690 0.1604 100.00 0.2126 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.0576 3.8515 2709 0.1462 99.00 0.1660 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.8515 34.7627 2744 0.1636 99.00 0.1686 . . 159 . . . . # _struct.entry_id 3JX7 _struct.title 'Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JX7 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'HEAT repeat, DNA binding, DNA glycosylase, DNA alkylation, lyase-DNA COMPLEX, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is asymmetric unit' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 3 ? HIS A 16 ? HIS A 2 HIS A 15 1 ? 14 HELX_P HELX_P2 2 ASN A 18 ? MET A 29 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 3 GLN A 39 ? THR A 55 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 4 ASP A 58 ? LYS A 60 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 5 ASP A 61 ? ASP A 71 ? ASP A 60 ASP A 70 1 ? 11 HELX_P HELX_P6 6 GLU A 74 ? TYR A 88 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 7 LYS A 89 ? ILE A 92 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 8 ASN A 93 ? THR A 95 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 9 HIS A 96 ? VAL A 105 ? HIS A 95 VAL A 104 1 ? 10 HELX_P HELX_P10 10 TRP A 109 ? VAL A 117 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 11 THR A 119 ? HIS A 128 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 12 PRO A 129 ? ALA A 134 ? PRO A 128 ALA A 133 5 ? 6 HELX_P HELX_P13 13 TYR A 135 ? SER A 142 ? TYR A 134 SER A 141 1 ? 8 HELX_P HELX_P14 14 ASN A 144 ? PHE A 154 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P15 15 TYR A 158 ? MET A 162 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P16 16 ASP A 163 ? HIS A 175 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P17 17 GLU A 179 ? ALA A 194 ? GLU A 178 ALA A 193 1 ? 16 HELX_P HELX_P18 18 ASN A 197 ? ASN A 208 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P19 19 ALA A 211 ? ILE A 219 ? ALA A 210 ILE A 218 1 ? 9 HELX_P HELX_P20 20 ILE A 222 ? GLY A 227 ? ILE A 221 GLY A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 6 "O3'" ? ? ? 1_555 B DZM 7 P ? ? B DT 6 B DZM 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? B DZM 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B DZM 7 B DA 8 1_555 ? ? ? ? ? ? ? 1.591 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 2 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 2 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 2 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 3 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 3 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 3 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 5 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 5 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 5 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 6 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 6 C DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 3JX7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JX7 _atom_sites.fract_transf_matrix[1][1] 0.026484 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011247 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010757 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022745 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 0 0 PRO PRO A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 HIS 3 2 2 HIS HIS A . n A 1 4 PRO 4 3 3 PRO PRO A . n A 1 5 PHE 5 4 4 PHE PHE A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 MET 25 24 24 MET MET A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 MET 29 28 28 MET MET A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 PHE 33 32 32 PHE PHE A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TRP 70 69 69 TRP TRP A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 MET 85 84 84 MET MET A . n A 1 86 GLN 86 85 85 GLN GLN A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 TRP 109 108 108 TRP TRP A . n A 1 110 TRP 110 109 109 TRP TRP A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 SER 142 141 141 SER SER A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 TRP 146 145 145 TRP TRP A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 ILE 152 151 151 ILE ILE A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 PHE 154 153 153 PHE PHE A . n A 1 155 GLN 155 154 154 GLN GLN A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 LYS 161 160 160 LYS LYS A . n A 1 162 MET 162 161 161 MET MET A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 PHE 168 167 167 PHE PHE A . n A 1 169 TRP 169 168 168 TRP TRP A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 GLY 172 171 171 GLY GLY A . n A 1 173 GLN 173 172 172 GLN GLN A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 HIS 175 174 174 HIS HIS A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 PHE 180 179 179 PHE PHE A . n A 1 181 PHE 181 180 180 PHE PHE A . n A 1 182 ILE 182 181 181 ILE ILE A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 TRP 188 187 187 TRP TRP A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 TYR 193 192 192 TYR TYR A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 LYS 195 194 194 LYS LYS A . n A 1 196 THR 196 195 195 THR THR A . n A 1 197 ASN 197 196 196 ASN ASN A . n A 1 198 PRO 198 197 197 PRO PRO A . n A 1 199 ASP 199 198 198 ASP ASP A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 VAL 201 200 200 VAL VAL A . n A 1 202 TRP 202 201 201 TRP TRP A . n A 1 203 GLU 203 202 202 GLU GLU A . n A 1 204 TYR 204 203 203 TYR TYR A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 GLN 206 205 205 GLN GLN A . n A 1 207 ASN 207 206 206 ASN ASN A . n A 1 208 ASN 208 207 207 ASN ASN A . n A 1 209 GLU 209 208 208 GLU GLU A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 PRO 212 211 211 PRO PRO A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 LYS 215 214 214 LYS LYS A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ILE 219 218 218 ILE ILE A . n A 1 220 LYS 220 219 219 LYS LYS A . n A 1 221 HIS 221 220 220 HIS HIS A . n A 1 222 ILE 222 221 221 ILE ILE A . n A 1 223 LYS 223 222 222 LYS LYS A . n A 1 224 GLN 224 223 223 GLN GLN A . n A 1 225 ASN 225 224 224 ASN ASN A . n A 1 226 TYR 226 225 225 TYR TYR A . n A 1 227 GLY 227 226 226 GLY GLY A . n A 1 228 ILE 228 227 227 ILE ILE A . n A 1 229 ASN 229 228 228 ASN ASN A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 GLU 231 230 230 GLU GLU A . n A 1 232 LYS 232 231 231 LYS LYS A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DZM 7 7 7 DZM DZM B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 13 13 DC DC C . n C 3 2 DC 2 14 14 DC DC C . n C 3 3 DC 3 15 15 DC DC C . n C 3 4 DG 4 16 16 DG DG C . n C 3 5 DT 5 17 17 DT DT C . n C 3 6 DT 6 18 18 DT DT C . n C 3 7 DA 7 19 19 DA DA C . n C 3 8 DG 8 20 20 DG DG C . n C 3 9 DT 9 21 21 DT DT C . n C 3 10 DC 10 22 22 DC DC C . n C 3 11 DC 11 23 23 DC DC C . n C 3 12 DG 12 24 24 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 232 232 HOH HOH A . D 4 HOH 2 233 233 HOH HOH A . D 4 HOH 3 234 234 HOH HOH A . D 4 HOH 4 235 235 HOH HOH A . D 4 HOH 5 236 236 HOH HOH A . D 4 HOH 6 237 237 HOH HOH A . D 4 HOH 7 238 238 HOH HOH A . D 4 HOH 8 239 239 HOH HOH A . D 4 HOH 9 240 240 HOH HOH A . D 4 HOH 10 241 241 HOH HOH A . D 4 HOH 11 242 242 HOH HOH A . D 4 HOH 12 243 243 HOH HOH A . D 4 HOH 13 244 244 HOH HOH A . D 4 HOH 14 245 245 HOH HOH A . D 4 HOH 15 246 246 HOH HOH A . D 4 HOH 16 247 247 HOH HOH A . D 4 HOH 17 248 248 HOH HOH A . D 4 HOH 18 249 249 HOH HOH A . D 4 HOH 19 250 250 HOH HOH A . D 4 HOH 20 251 251 HOH HOH A . D 4 HOH 21 252 252 HOH HOH A . D 4 HOH 22 253 253 HOH HOH A . D 4 HOH 23 254 254 HOH HOH A . D 4 HOH 24 255 255 HOH HOH A . D 4 HOH 25 256 256 HOH HOH A . D 4 HOH 26 257 257 HOH HOH A . D 4 HOH 27 258 258 HOH HOH A . D 4 HOH 28 259 259 HOH HOH A . D 4 HOH 29 260 260 HOH HOH A . D 4 HOH 30 261 261 HOH HOH A . D 4 HOH 31 262 262 HOH HOH A . D 4 HOH 32 263 263 HOH HOH A . D 4 HOH 33 264 264 HOH HOH A . D 4 HOH 34 265 265 HOH HOH A . D 4 HOH 35 266 266 HOH HOH A . D 4 HOH 36 267 267 HOH HOH A . D 4 HOH 37 268 268 HOH HOH A . D 4 HOH 38 269 269 HOH HOH A . D 4 HOH 39 270 270 HOH HOH A . D 4 HOH 40 271 271 HOH HOH A . D 4 HOH 41 272 272 HOH HOH A . D 4 HOH 42 273 273 HOH HOH A . D 4 HOH 43 274 274 HOH HOH A . D 4 HOH 44 275 275 HOH HOH A . D 4 HOH 45 276 276 HOH HOH A . D 4 HOH 46 277 277 HOH HOH A . D 4 HOH 47 278 278 HOH HOH A . D 4 HOH 48 279 279 HOH HOH A . D 4 HOH 49 280 280 HOH HOH A . D 4 HOH 50 281 281 HOH HOH A . D 4 HOH 51 282 282 HOH HOH A . D 4 HOH 52 283 283 HOH HOH A . D 4 HOH 53 284 284 HOH HOH A . D 4 HOH 54 285 285 HOH HOH A . D 4 HOH 55 286 286 HOH HOH A . D 4 HOH 56 287 287 HOH HOH A . D 4 HOH 57 288 288 HOH HOH A . D 4 HOH 58 289 289 HOH HOH A . D 4 HOH 59 290 290 HOH HOH A . D 4 HOH 60 291 291 HOH HOH A . D 4 HOH 61 292 292 HOH HOH A . D 4 HOH 62 293 293 HOH HOH A . D 4 HOH 63 294 294 HOH HOH A . D 4 HOH 64 295 295 HOH HOH A . D 4 HOH 65 296 296 HOH HOH A . D 4 HOH 66 297 297 HOH HOH A . D 4 HOH 67 298 298 HOH HOH A . D 4 HOH 68 299 299 HOH HOH A . D 4 HOH 69 300 300 HOH HOH A . D 4 HOH 70 301 301 HOH HOH A . D 4 HOH 71 302 302 HOH HOH A . D 4 HOH 72 303 303 HOH HOH A . D 4 HOH 73 304 304 HOH HOH A . D 4 HOH 74 305 305 HOH HOH A . D 4 HOH 75 306 306 HOH HOH A . D 4 HOH 76 307 307 HOH HOH A . D 4 HOH 77 308 308 HOH HOH A . D 4 HOH 78 309 309 HOH HOH A . D 4 HOH 79 310 310 HOH HOH A . D 4 HOH 80 311 311 HOH HOH A . D 4 HOH 81 312 312 HOH HOH A . D 4 HOH 82 313 313 HOH HOH A . D 4 HOH 83 314 314 HOH HOH A . D 4 HOH 84 315 315 HOH HOH A . D 4 HOH 85 316 316 HOH HOH A . D 4 HOH 86 317 317 HOH HOH A . D 4 HOH 87 318 318 HOH HOH A . D 4 HOH 88 319 319 HOH HOH A . D 4 HOH 89 320 320 HOH HOH A . D 4 HOH 90 321 321 HOH HOH A . D 4 HOH 91 322 322 HOH HOH A . D 4 HOH 92 323 323 HOH HOH A . D 4 HOH 93 324 324 HOH HOH A . D 4 HOH 94 325 325 HOH HOH A . D 4 HOH 95 326 326 HOH HOH A . D 4 HOH 96 327 327 HOH HOH A . D 4 HOH 97 328 328 HOH HOH A . D 4 HOH 98 329 329 HOH HOH A . D 4 HOH 99 330 330 HOH HOH A . D 4 HOH 100 331 331 HOH HOH A . D 4 HOH 101 332 332 HOH HOH A . D 4 HOH 102 333 333 HOH HOH A . D 4 HOH 103 334 334 HOH HOH A . D 4 HOH 104 335 335 HOH HOH A . D 4 HOH 105 336 336 HOH HOH A . D 4 HOH 106 337 337 HOH HOH A . D 4 HOH 107 338 338 HOH HOH A . D 4 HOH 108 339 339 HOH HOH A . D 4 HOH 109 340 340 HOH HOH A . D 4 HOH 110 341 341 HOH HOH A . D 4 HOH 111 342 342 HOH HOH A . D 4 HOH 112 343 343 HOH HOH A . D 4 HOH 113 344 344 HOH HOH A . D 4 HOH 114 345 345 HOH HOH A . D 4 HOH 115 346 346 HOH HOH A . D 4 HOH 116 347 347 HOH HOH A . D 4 HOH 117 348 348 HOH HOH A . D 4 HOH 118 349 349 HOH HOH A . D 4 HOH 119 350 350 HOH HOH A . D 4 HOH 120 351 351 HOH HOH A . D 4 HOH 121 352 352 HOH HOH A . D 4 HOH 122 353 353 HOH HOH A . D 4 HOH 123 354 354 HOH HOH A . D 4 HOH 124 355 355 HOH HOH A . D 4 HOH 125 356 356 HOH HOH A . D 4 HOH 126 357 357 HOH HOH A . D 4 HOH 127 358 358 HOH HOH A . D 4 HOH 128 359 359 HOH HOH A . D 4 HOH 129 360 360 HOH HOH A . D 4 HOH 130 361 361 HOH HOH A . D 4 HOH 131 362 362 HOH HOH A . D 4 HOH 132 363 363 HOH HOH A . D 4 HOH 133 364 364 HOH HOH A . D 4 HOH 134 365 365 HOH HOH A . D 4 HOH 135 366 366 HOH HOH A . D 4 HOH 136 367 367 HOH HOH A . D 4 HOH 137 368 368 HOH HOH A . D 4 HOH 138 369 369 HOH HOH A . D 4 HOH 139 370 370 HOH HOH A . D 4 HOH 140 371 371 HOH HOH A . D 4 HOH 141 372 372 HOH HOH A . D 4 HOH 142 373 373 HOH HOH A . D 4 HOH 143 374 374 HOH HOH A . D 4 HOH 144 375 375 HOH HOH A . D 4 HOH 145 376 376 HOH HOH A . D 4 HOH 146 377 377 HOH HOH A . D 4 HOH 147 378 378 HOH HOH A . D 4 HOH 148 379 379 HOH HOH A . D 4 HOH 149 380 380 HOH HOH A . D 4 HOH 150 381 381 HOH HOH A . D 4 HOH 151 382 382 HOH HOH A . D 4 HOH 152 383 383 HOH HOH A . D 4 HOH 153 384 384 HOH HOH A . D 4 HOH 154 385 385 HOH HOH A . D 4 HOH 155 386 386 HOH HOH A . D 4 HOH 156 387 387 HOH HOH A . D 4 HOH 157 388 388 HOH HOH A . D 4 HOH 158 389 389 HOH HOH A . D 4 HOH 159 390 390 HOH HOH A . D 4 HOH 160 391 391 HOH HOH A . D 4 HOH 161 392 392 HOH HOH A . D 4 HOH 162 393 393 HOH HOH A . D 4 HOH 163 394 394 HOH HOH A . D 4 HOH 164 395 395 HOH HOH A . D 4 HOH 165 396 396 HOH HOH A . D 4 HOH 166 397 397 HOH HOH A . D 4 HOH 167 398 398 HOH HOH A . D 4 HOH 168 399 399 HOH HOH A . D 4 HOH 169 400 400 HOH HOH A . D 4 HOH 170 401 401 HOH HOH A . D 4 HOH 171 402 402 HOH HOH A . D 4 HOH 172 403 403 HOH HOH A . D 4 HOH 173 404 404 HOH HOH A . D 4 HOH 174 405 405 HOH HOH A . D 4 HOH 175 406 406 HOH HOH A . D 4 HOH 176 407 407 HOH HOH A . D 4 HOH 177 408 408 HOH HOH A . D 4 HOH 178 409 409 HOH HOH A . D 4 HOH 179 410 410 HOH HOH A . D 4 HOH 180 411 411 HOH HOH A . D 4 HOH 181 412 412 HOH HOH A . D 4 HOH 182 413 413 HOH HOH A . D 4 HOH 183 414 414 HOH HOH A . D 4 HOH 184 415 415 HOH HOH A . D 4 HOH 185 416 416 HOH HOH A . D 4 HOH 186 417 417 HOH HOH A . D 4 HOH 187 418 418 HOH HOH A . D 4 HOH 188 419 419 HOH HOH A . D 4 HOH 189 420 420 HOH HOH A . D 4 HOH 190 421 421 HOH HOH A . D 4 HOH 191 422 422 HOH HOH A . D 4 HOH 192 423 423 HOH HOH A . D 4 HOH 193 424 424 HOH HOH A . D 4 HOH 194 425 425 HOH HOH A . D 4 HOH 195 426 426 HOH HOH A . D 4 HOH 196 427 427 HOH HOH A . D 4 HOH 197 428 428 HOH HOH A . D 4 HOH 198 429 429 HOH HOH A . D 4 HOH 199 430 430 HOH HOH A . D 4 HOH 200 431 431 HOH HOH A . D 4 HOH 201 432 432 HOH HOH A . D 4 HOH 202 433 433 HOH HOH A . D 4 HOH 203 434 434 HOH HOH A . D 4 HOH 204 435 435 HOH HOH A . D 4 HOH 205 436 436 HOH HOH A . D 4 HOH 206 437 437 HOH HOH A . D 4 HOH 207 438 438 HOH HOH A . D 4 HOH 208 439 439 HOH HOH A . D 4 HOH 209 440 440 HOH HOH A . D 4 HOH 210 441 441 HOH HOH A . D 4 HOH 211 442 442 HOH HOH A . D 4 HOH 212 443 443 HOH HOH A . D 4 HOH 213 444 444 HOH HOH A . D 4 HOH 214 445 445 HOH HOH A . D 4 HOH 215 446 446 HOH HOH A . D 4 HOH 216 447 447 HOH HOH A . D 4 HOH 217 448 448 HOH HOH A . D 4 HOH 218 449 449 HOH HOH A . D 4 HOH 219 450 450 HOH HOH A . D 4 HOH 220 451 451 HOH HOH A . D 4 HOH 221 452 452 HOH HOH A . D 4 HOH 222 453 453 HOH HOH A . D 4 HOH 223 454 454 HOH HOH A . D 4 HOH 224 455 455 HOH HOH A . D 4 HOH 225 456 456 HOH HOH A . D 4 HOH 226 457 457 HOH HOH A . D 4 HOH 227 458 458 HOH HOH A . D 4 HOH 228 459 459 HOH HOH A . D 4 HOH 229 460 460 HOH HOH A . D 4 HOH 230 461 461 HOH HOH A . D 4 HOH 231 462 462 HOH HOH A . D 4 HOH 232 463 463 HOH HOH A . D 4 HOH 233 464 464 HOH HOH A . D 4 HOH 234 465 465 HOH HOH A . D 4 HOH 235 466 466 HOH HOH A . D 4 HOH 236 467 467 HOH HOH A . D 4 HOH 237 468 468 HOH HOH A . D 4 HOH 238 469 469 HOH HOH A . D 4 HOH 239 470 470 HOH HOH A . D 4 HOH 240 471 471 HOH HOH A . D 4 HOH 241 472 472 HOH HOH A . D 4 HOH 242 473 473 HOH HOH A . D 4 HOH 243 474 474 HOH HOH A . D 4 HOH 244 475 475 HOH HOH A . D 4 HOH 245 476 476 HOH HOH A . D 4 HOH 246 477 477 HOH HOH A . D 4 HOH 247 478 478 HOH HOH A . D 4 HOH 248 479 479 HOH HOH A . D 4 HOH 249 480 480 HOH HOH A . D 4 HOH 250 481 481 HOH HOH A . D 4 HOH 251 482 482 HOH HOH A . D 4 HOH 252 483 483 HOH HOH A . D 4 HOH 253 484 484 HOH HOH A . D 4 HOH 254 485 485 HOH HOH A . D 4 HOH 255 486 486 HOH HOH A . D 4 HOH 256 487 487 HOH HOH A . D 4 HOH 257 488 488 HOH HOH A . D 4 HOH 258 489 489 HOH HOH A . D 4 HOH 259 490 490 HOH HOH A . D 4 HOH 260 491 491 HOH HOH A . D 4 HOH 261 492 492 HOH HOH A . D 4 HOH 262 493 493 HOH HOH A . D 4 HOH 263 494 494 HOH HOH A . D 4 HOH 264 495 495 HOH HOH A . D 4 HOH 265 496 496 HOH HOH A . D 4 HOH 266 497 497 HOH HOH A . D 4 HOH 267 498 498 HOH HOH A . D 4 HOH 268 499 499 HOH HOH A . D 4 HOH 269 500 500 HOH HOH A . D 4 HOH 270 501 501 HOH HOH A . D 4 HOH 271 502 502 HOH HOH A . D 4 HOH 272 503 503 HOH HOH A . D 4 HOH 273 504 504 HOH HOH A . D 4 HOH 274 505 505 HOH HOH A . D 4 HOH 275 506 506 HOH HOH A . D 4 HOH 276 507 507 HOH HOH A . D 4 HOH 277 508 508 HOH HOH A . D 4 HOH 278 509 509 HOH HOH A . D 4 HOH 279 510 510 HOH HOH A . D 4 HOH 280 511 511 HOH HOH A . D 4 HOH 281 512 512 HOH HOH A . D 4 HOH 282 513 513 HOH HOH A . D 4 HOH 283 514 514 HOH HOH A . D 4 HOH 284 515 515 HOH HOH A . D 4 HOH 285 516 516 HOH HOH A . D 4 HOH 286 517 517 HOH HOH A . D 4 HOH 287 518 518 HOH HOH A . D 4 HOH 288 519 519 HOH HOH A . D 4 HOH 289 520 520 HOH HOH A . D 4 HOH 290 521 521 HOH HOH A . D 4 HOH 291 522 522 HOH HOH A . D 4 HOH 292 523 523 HOH HOH A . D 4 HOH 293 524 524 HOH HOH A . D 4 HOH 294 525 525 HOH HOH A . D 4 HOH 295 526 526 HOH HOH A . D 4 HOH 296 527 527 HOH HOH A . D 4 HOH 297 528 528 HOH HOH A . D 4 HOH 298 529 529 HOH HOH A . D 4 HOH 299 530 530 HOH HOH A . D 4 HOH 300 531 531 HOH HOH A . D 4 HOH 301 532 532 HOH HOH A . D 4 HOH 302 533 533 HOH HOH A . D 4 HOH 303 534 534 HOH HOH A . D 4 HOH 304 535 535 HOH HOH A . D 4 HOH 305 536 536 HOH HOH A . D 4 HOH 306 537 537 HOH HOH A . D 4 HOH 307 538 538 HOH HOH A . D 4 HOH 308 539 539 HOH HOH A . D 4 HOH 309 540 540 HOH HOH A . D 4 HOH 310 541 541 HOH HOH A . D 4 HOH 311 542 542 HOH HOH A . D 4 HOH 312 543 543 HOH HOH A . D 4 HOH 313 544 544 HOH HOH A . D 4 HOH 314 545 545 HOH HOH A . D 4 HOH 315 546 546 HOH HOH A . D 4 HOH 316 547 547 HOH HOH A . D 4 HOH 317 548 548 HOH HOH A . D 4 HOH 318 549 549 HOH HOH A . D 4 HOH 319 550 550 HOH HOH A . D 4 HOH 320 551 551 HOH HOH A . D 4 HOH 321 552 552 HOH HOH A . D 4 HOH 322 553 553 HOH HOH A . D 4 HOH 323 554 554 HOH HOH A . D 4 HOH 324 555 555 HOH HOH A . D 4 HOH 325 556 556 HOH HOH A . D 4 HOH 326 557 557 HOH HOH A . D 4 HOH 327 558 558 HOH HOH A . D 4 HOH 328 559 559 HOH HOH A . D 4 HOH 329 560 560 HOH HOH A . D 4 HOH 330 561 561 HOH HOH A . D 4 HOH 331 562 562 HOH HOH A . D 4 HOH 332 563 563 HOH HOH A . D 4 HOH 333 564 564 HOH HOH A . D 4 HOH 334 565 565 HOH HOH A . D 4 HOH 335 566 566 HOH HOH A . D 4 HOH 336 567 567 HOH HOH A . D 4 HOH 337 568 568 HOH HOH A . D 4 HOH 338 569 569 HOH HOH A . D 4 HOH 339 570 570 HOH HOH A . D 4 HOH 340 571 571 HOH HOH A . D 4 HOH 341 572 572 HOH HOH A . D 4 HOH 342 573 573 HOH HOH A . D 4 HOH 343 574 574 HOH HOH A . D 4 HOH 344 575 575 HOH HOH A . D 4 HOH 345 576 576 HOH HOH A . D 4 HOH 346 577 577 HOH HOH A . D 4 HOH 347 578 578 HOH HOH A . D 4 HOH 348 579 579 HOH HOH A . D 4 HOH 349 580 580 HOH HOH A . D 4 HOH 350 581 581 HOH HOH A . D 4 HOH 351 582 582 HOH HOH A . D 4 HOH 352 583 583 HOH HOH A . D 4 HOH 353 584 584 HOH HOH A . D 4 HOH 354 585 585 HOH HOH A . D 4 HOH 355 586 586 HOH HOH A . D 4 HOH 356 587 587 HOH HOH A . D 4 HOH 357 588 588 HOH HOH A . D 4 HOH 358 589 589 HOH HOH A . D 4 HOH 359 590 590 HOH HOH A . D 4 HOH 360 591 591 HOH HOH A . D 4 HOH 361 592 592 HOH HOH A . D 4 HOH 362 593 593 HOH HOH A . D 4 HOH 363 594 594 HOH HOH A . D 4 HOH 364 595 12 HOH HOH A . E 4 HOH 1 24 24 HOH HOH B . E 4 HOH 2 25 1 HOH HOH B . E 4 HOH 3 45 45 HOH HOH B . E 4 HOH 4 55 55 HOH HOH B . E 4 HOH 5 113 113 HOH HOH B . E 4 HOH 6 114 114 HOH HOH B . E 4 HOH 7 115 115 HOH HOH B . E 4 HOH 8 125 125 HOH HOH B . E 4 HOH 9 127 127 HOH HOH B . E 4 HOH 10 162 162 HOH HOH B . E 4 HOH 11 172 172 HOH HOH B . E 4 HOH 12 177 177 HOH HOH B . E 4 HOH 13 184 184 HOH HOH B . E 4 HOH 14 188 188 HOH HOH B . E 4 HOH 15 190 190 HOH HOH B . E 4 HOH 16 197 197 HOH HOH B . E 4 HOH 17 205 205 HOH HOH B . E 4 HOH 18 213 213 HOH HOH B . E 4 HOH 19 214 214 HOH HOH B . E 4 HOH 20 215 215 HOH HOH B . E 4 HOH 21 216 216 HOH HOH B . E 4 HOH 22 219 219 HOH HOH B . E 4 HOH 23 220 220 HOH HOH B . E 4 HOH 24 223 223 HOH HOH B . E 4 HOH 25 225 225 HOH HOH B . E 4 HOH 26 226 226 HOH HOH B . E 4 HOH 27 233 233 HOH HOH B . E 4 HOH 28 243 243 HOH HOH B . E 4 HOH 29 268 268 HOH HOH B . E 4 HOH 30 277 277 HOH HOH B . E 4 HOH 31 281 281 HOH HOH B . E 4 HOH 32 285 285 HOH HOH B . E 4 HOH 33 286 286 HOH HOH B . E 4 HOH 34 297 297 HOH HOH B . E 4 HOH 35 312 312 HOH HOH B . E 4 HOH 36 313 313 HOH HOH B . E 4 HOH 37 314 314 HOH HOH B . E 4 HOH 38 337 337 HOH HOH B . E 4 HOH 39 341 341 HOH HOH B . E 4 HOH 40 344 344 HOH HOH B . E 4 HOH 41 354 354 HOH HOH B . E 4 HOH 42 367 367 HOH HOH B . E 4 HOH 43 374 374 HOH HOH B . E 4 HOH 44 383 383 HOH HOH B . E 4 HOH 45 388 388 HOH HOH B . E 4 HOH 46 393 393 HOH HOH B . E 4 HOH 47 398 398 HOH HOH B . E 4 HOH 48 399 399 HOH HOH B . E 4 HOH 49 402 402 HOH HOH B . E 4 HOH 50 432 432 HOH HOH B . E 4 HOH 51 438 438 HOH HOH B . E 4 HOH 52 439 439 HOH HOH B . F 4 HOH 1 1 1 HOH HOH C . F 4 HOH 2 37 37 HOH HOH C . F 4 HOH 3 42 42 HOH HOH C . F 4 HOH 4 56 56 HOH HOH C . F 4 HOH 5 64 64 HOH HOH C . F 4 HOH 6 67 67 HOH HOH C . F 4 HOH 7 74 74 HOH HOH C . F 4 HOH 8 90 90 HOH HOH C . F 4 HOH 9 91 91 HOH HOH C . F 4 HOH 10 119 119 HOH HOH C . F 4 HOH 11 122 122 HOH HOH C . F 4 HOH 12 123 123 HOH HOH C . F 4 HOH 13 124 124 HOH HOH C . F 4 HOH 14 171 171 HOH HOH C . F 4 HOH 15 181 181 HOH HOH C . F 4 HOH 16 203 203 HOH HOH C . F 4 HOH 17 221 221 HOH HOH C . F 4 HOH 18 222 222 HOH HOH C . F 4 HOH 19 224 224 HOH HOH C . F 4 HOH 20 231 231 HOH HOH C . F 4 HOH 21 271 271 HOH HOH C . F 4 HOH 22 279 279 HOH HOH C . F 4 HOH 23 284 284 HOH HOH C . F 4 HOH 24 299 299 HOH HOH C . F 4 HOH 25 345 345 HOH HOH C . F 4 HOH 26 353 353 HOH HOH C . F 4 HOH 27 379 379 HOH HOH C . F 4 HOH 28 381 381 HOH HOH C . F 4 HOH 29 403 403 HOH HOH C . F 4 HOH 30 411 411 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id DZM _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id DZM _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details 3-DEAZA-3-METHYLADENINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -16 ? 1 'SSA (A^2)' 15220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq 7 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -1.8545 10.8841 18.5803 0.0438 0.0468 0.0451 -0.0168 0.0085 0.0047 0.3495 0.2307 0.2659 -0.1530 0.1341 0.0165 0.0002 -0.0045 0.0033 -0.0021 0.0185 -0.0011 -0.0064 -0.0118 -0.0130 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.0689 0.1193 0.2100 0.0199 -0.0148 -0.0565 3.4224 0.0374 0.8583 -0.0427 0.5651 -0.1404 -0.3114 -0.3057 0.7966 0.0034 0.0912 -0.1302 0.0720 -0.1143 0.1813 'X-RAY DIFFRACTION' 3 ? ? ? ? ? 0.0735 0.1634 0.2224 0.0456 -0.0449 -0.0691 2.4172 0.5928 0.4271 0.2890 -0.1658 0.4412 -0.2860 -0.4520 0.6918 -0.0227 0.1459 0.0775 -0.0085 0.0624 0.1171 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.94 108.30 4.64 0.30 N 2 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.14 108.30 1.84 0.30 N 3 1 "O3'" B DT 6 ? ? P B DZM 7 ? ? OP2 B DZM 7 ? ? 126.07 110.50 15.57 1.10 Y 4 1 "O3'" B DZM 7 ? ? P B DA 8 ? ? OP2 B DA 8 ? ? 119.38 110.50 8.88 1.10 Y 5 1 "O3'" B DZM 7 ? ? P B DA 8 ? ? OP1 B DA 8 ? ? 90.15 105.20 -15.05 2.20 Y 6 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.00 108.30 4.70 0.30 N 7 1 "O4'" C DC 22 ? ? "C1'" C DC 22 ? ? N1 C DC 22 ? ? 110.39 108.30 2.09 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 71.24 154.00 2 1 THR A 118 ? ? -92.87 -74.77 3 1 TYR A 134 ? ? -132.37 -49.38 4 1 LYS A 158 ? ? 51.70 -121.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 22 ? CD ? A GLU 23 CD 2 1 Y 1 A GLU 22 ? OE1 ? A GLU 23 OE1 3 1 Y 1 A GLU 22 ? OE2 ? A GLU 23 OE2 4 1 Y 1 A GLN 51 ? OE1 ? A GLN 52 OE1 5 1 Y 1 A GLU 164 ? OE1 ? A GLU 165 OE1 6 1 Y 1 A GLU 164 ? OE2 ? A GLU 165 OE2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 DZM P P N N 217 DZM N1 N Y N 218 DZM C2 C Y N 219 DZM C3 C Y N 220 DZM C4 C Y N 221 DZM C5 C Y N 222 DZM C6 C Y N 223 DZM N6 N N N 224 DZM N7 N Y N 225 DZM C8 C Y N 226 DZM N9 N Y N 227 DZM "C1'" C N R 228 DZM OP2 O N N 229 DZM "C2'" C N N 230 DZM OP1 O N N 231 DZM "C3'" C N S 232 DZM "O3'" O N N 233 DZM C3M C N N 234 DZM "C4'" C N R 235 DZM "O4'" O N N 236 DZM "C5'" C N N 237 DZM "O5'" O N N 238 DZM OP3 O N N 239 DZM H2 H N N 240 DZM HN6 H N N 241 DZM HN6A H N N 242 DZM H8 H N N 243 DZM "H1'" H N N 244 DZM HOP2 H N N 245 DZM "H2'" H N N 246 DZM "H2'A" H N N 247 DZM "H3'" H N N 248 DZM "HO3'" H N N 249 DZM H3M H N N 250 DZM H3MA H N N 251 DZM H3MB H N N 252 DZM "H4'" H N N 253 DZM "H5'" H N N 254 DZM "H5'A" H N N 255 DZM HOP3 H N N 256 GLN N N N N 257 GLN CA C N S 258 GLN C C N N 259 GLN O O N N 260 GLN CB C N N 261 GLN CG C N N 262 GLN CD C N N 263 GLN OE1 O N N 264 GLN NE2 N N N 265 GLN OXT O N N 266 GLN H H N N 267 GLN H2 H N N 268 GLN HA H N N 269 GLN HB2 H N N 270 GLN HB3 H N N 271 GLN HG2 H N N 272 GLN HG3 H N N 273 GLN HE21 H N N 274 GLN HE22 H N N 275 GLN HXT H N N 276 GLU N N N N 277 GLU CA C N S 278 GLU C C N N 279 GLU O O N N 280 GLU CB C N N 281 GLU CG C N N 282 GLU CD C N N 283 GLU OE1 O N N 284 GLU OE2 O N N 285 GLU OXT O N N 286 GLU H H N N 287 GLU H2 H N N 288 GLU HA H N N 289 GLU HB2 H N N 290 GLU HB3 H N N 291 GLU HG2 H N N 292 GLU HG3 H N N 293 GLU HE2 H N N 294 GLU HXT H N N 295 GLY N N N N 296 GLY CA C N N 297 GLY C C N N 298 GLY O O N N 299 GLY OXT O N N 300 GLY H H N N 301 GLY H2 H N N 302 GLY HA2 H N N 303 GLY HA3 H N N 304 GLY HXT H N N 305 HIS N N N N 306 HIS CA C N S 307 HIS C C N N 308 HIS O O N N 309 HIS CB C N N 310 HIS CG C Y N 311 HIS ND1 N Y N 312 HIS CD2 C Y N 313 HIS CE1 C Y N 314 HIS NE2 N Y N 315 HIS OXT O N N 316 HIS H H N N 317 HIS H2 H N N 318 HIS HA H N N 319 HIS HB2 H N N 320 HIS HB3 H N N 321 HIS HD1 H N N 322 HIS HD2 H N N 323 HIS HE1 H N N 324 HIS HE2 H N N 325 HIS HXT H N N 326 HOH O O N N 327 HOH H1 H N N 328 HOH H2 H N N 329 ILE N N N N 330 ILE CA C N S 331 ILE C C N N 332 ILE O O N N 333 ILE CB C N S 334 ILE CG1 C N N 335 ILE CG2 C N N 336 ILE CD1 C N N 337 ILE OXT O N N 338 ILE H H N N 339 ILE H2 H N N 340 ILE HA H N N 341 ILE HB H N N 342 ILE HG12 H N N 343 ILE HG13 H N N 344 ILE HG21 H N N 345 ILE HG22 H N N 346 ILE HG23 H N N 347 ILE HD11 H N N 348 ILE HD12 H N N 349 ILE HD13 H N N 350 ILE HXT H N N 351 LEU N N N N 352 LEU CA C N S 353 LEU C C N N 354 LEU O O N N 355 LEU CB C N N 356 LEU CG C N N 357 LEU CD1 C N N 358 LEU CD2 C N N 359 LEU OXT O N N 360 LEU H H N N 361 LEU H2 H N N 362 LEU HA H N N 363 LEU HB2 H N N 364 LEU HB3 H N N 365 LEU HG H N N 366 LEU HD11 H N N 367 LEU HD12 H N N 368 LEU HD13 H N N 369 LEU HD21 H N N 370 LEU HD22 H N N 371 LEU HD23 H N N 372 LEU HXT H N N 373 LYS N N N N 374 LYS CA C N S 375 LYS C C N N 376 LYS O O N N 377 LYS CB C N N 378 LYS CG C N N 379 LYS CD C N N 380 LYS CE C N N 381 LYS NZ N N N 382 LYS OXT O N N 383 LYS H H N N 384 LYS H2 H N N 385 LYS HA H N N 386 LYS HB2 H N N 387 LYS HB3 H N N 388 LYS HG2 H N N 389 LYS HG3 H N N 390 LYS HD2 H N N 391 LYS HD3 H N N 392 LYS HE2 H N N 393 LYS HE3 H N N 394 LYS HZ1 H N N 395 LYS HZ2 H N N 396 LYS HZ3 H N N 397 LYS HXT H N N 398 MET N N N N 399 MET CA C N S 400 MET C C N N 401 MET O O N N 402 MET CB C N N 403 MET CG C N N 404 MET SD S N N 405 MET CE C N N 406 MET OXT O N N 407 MET H H N N 408 MET H2 H N N 409 MET HA H N N 410 MET HB2 H N N 411 MET HB3 H N N 412 MET HG2 H N N 413 MET HG3 H N N 414 MET HE1 H N N 415 MET HE2 H N N 416 MET HE3 H N N 417 MET HXT H N N 418 PHE N N N N 419 PHE CA C N S 420 PHE C C N N 421 PHE O O N N 422 PHE CB C N N 423 PHE CG C Y N 424 PHE CD1 C Y N 425 PHE CD2 C Y N 426 PHE CE1 C Y N 427 PHE CE2 C Y N 428 PHE CZ C Y N 429 PHE OXT O N N 430 PHE H H N N 431 PHE H2 H N N 432 PHE HA H N N 433 PHE HB2 H N N 434 PHE HB3 H N N 435 PHE HD1 H N N 436 PHE HD2 H N N 437 PHE HE1 H N N 438 PHE HE2 H N N 439 PHE HZ H N N 440 PHE HXT H N N 441 PRO N N N N 442 PRO CA C N S 443 PRO C C N N 444 PRO O O N N 445 PRO CB C N N 446 PRO CG C N N 447 PRO CD C N N 448 PRO OXT O N N 449 PRO H H N N 450 PRO HA H N N 451 PRO HB2 H N N 452 PRO HB3 H N N 453 PRO HG2 H N N 454 PRO HG3 H N N 455 PRO HD2 H N N 456 PRO HD3 H N N 457 PRO HXT H N N 458 SER N N N N 459 SER CA C N S 460 SER C C N N 461 SER O O N N 462 SER CB C N N 463 SER OG O N N 464 SER OXT O N N 465 SER H H N N 466 SER H2 H N N 467 SER HA H N N 468 SER HB2 H N N 469 SER HB3 H N N 470 SER HG H N N 471 SER HXT H N N 472 THR N N N N 473 THR CA C N S 474 THR C C N N 475 THR O O N N 476 THR CB C N R 477 THR OG1 O N N 478 THR CG2 C N N 479 THR OXT O N N 480 THR H H N N 481 THR H2 H N N 482 THR HA H N N 483 THR HB H N N 484 THR HG1 H N N 485 THR HG21 H N N 486 THR HG22 H N N 487 THR HG23 H N N 488 THR HXT H N N 489 TRP N N N N 490 TRP CA C N S 491 TRP C C N N 492 TRP O O N N 493 TRP CB C N N 494 TRP CG C Y N 495 TRP CD1 C Y N 496 TRP CD2 C Y N 497 TRP NE1 N Y N 498 TRP CE2 C Y N 499 TRP CE3 C Y N 500 TRP CZ2 C Y N 501 TRP CZ3 C Y N 502 TRP CH2 C Y N 503 TRP OXT O N N 504 TRP H H N N 505 TRP H2 H N N 506 TRP HA H N N 507 TRP HB2 H N N 508 TRP HB3 H N N 509 TRP HD1 H N N 510 TRP HE1 H N N 511 TRP HE3 H N N 512 TRP HZ2 H N N 513 TRP HZ3 H N N 514 TRP HH2 H N N 515 TRP HXT H N N 516 TYR N N N N 517 TYR CA C N S 518 TYR C C N N 519 TYR O O N N 520 TYR CB C N N 521 TYR CG C Y N 522 TYR CD1 C Y N 523 TYR CD2 C Y N 524 TYR CE1 C Y N 525 TYR CE2 C Y N 526 TYR CZ C Y N 527 TYR OH O N N 528 TYR OXT O N N 529 TYR H H N N 530 TYR H2 H N N 531 TYR HA H N N 532 TYR HB2 H N N 533 TYR HB3 H N N 534 TYR HD1 H N N 535 TYR HD2 H N N 536 TYR HE1 H N N 537 TYR HE2 H N N 538 TYR HH H N N 539 TYR HXT H N N 540 VAL N N N N 541 VAL CA C N S 542 VAL C C N N 543 VAL O O N N 544 VAL CB C N N 545 VAL CG1 C N N 546 VAL CG2 C N N 547 VAL OXT O N N 548 VAL H H N N 549 VAL H2 H N N 550 VAL HA H N N 551 VAL HB H N N 552 VAL HG11 H N N 553 VAL HG12 H N N 554 VAL HG13 H N N 555 VAL HG21 H N N 556 VAL HG22 H N N 557 VAL HG23 H N N 558 VAL HXT H N N 559 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 DZM P OP2 sing N N 219 DZM P OP1 doub N N 220 DZM P "O5'" sing N N 221 DZM N1 C2 sing Y N 222 DZM N1 C6 doub Y N 223 DZM C2 C3 doub Y N 224 DZM C3 C4 sing Y N 225 DZM C3 C3M sing N N 226 DZM C4 C5 doub Y N 227 DZM C4 N9 sing Y N 228 DZM C5 C6 sing Y N 229 DZM C5 N7 sing Y N 230 DZM C6 N6 sing N N 231 DZM N7 C8 doub Y N 232 DZM C8 N9 sing Y N 233 DZM N9 "C1'" sing N N 234 DZM "C1'" "C2'" sing N N 235 DZM "C1'" "O4'" sing N N 236 DZM "C2'" "C3'" sing N N 237 DZM "C3'" "O3'" sing N N 238 DZM "C3'" "C4'" sing N N 239 DZM "C4'" "O4'" sing N N 240 DZM "C4'" "C5'" sing N N 241 DZM "C5'" "O5'" sing N N 242 DZM P OP3 sing N N 243 DZM C2 H2 sing N N 244 DZM N6 HN6 sing N N 245 DZM N6 HN6A sing N N 246 DZM C8 H8 sing N N 247 DZM "C1'" "H1'" sing N N 248 DZM OP2 HOP2 sing N N 249 DZM "C2'" "H2'" sing N N 250 DZM "C2'" "H2'A" sing N N 251 DZM "C3'" "H3'" sing N N 252 DZM "O3'" "HO3'" sing N N 253 DZM C3M H3M sing N N 254 DZM C3M H3MA sing N N 255 DZM C3M H3MB sing N N 256 DZM "C4'" "H4'" sing N N 257 DZM "C5'" "H5'" sing N N 258 DZM "C5'" "H5'A" sing N N 259 DZM OP3 HOP3 sing N N 260 GLN N CA sing N N 261 GLN N H sing N N 262 GLN N H2 sing N N 263 GLN CA C sing N N 264 GLN CA CB sing N N 265 GLN CA HA sing N N 266 GLN C O doub N N 267 GLN C OXT sing N N 268 GLN CB CG sing N N 269 GLN CB HB2 sing N N 270 GLN CB HB3 sing N N 271 GLN CG CD sing N N 272 GLN CG HG2 sing N N 273 GLN CG HG3 sing N N 274 GLN CD OE1 doub N N 275 GLN CD NE2 sing N N 276 GLN NE2 HE21 sing N N 277 GLN NE2 HE22 sing N N 278 GLN OXT HXT sing N N 279 GLU N CA sing N N 280 GLU N H sing N N 281 GLU N H2 sing N N 282 GLU CA C sing N N 283 GLU CA CB sing N N 284 GLU CA HA sing N N 285 GLU C O doub N N 286 GLU C OXT sing N N 287 GLU CB CG sing N N 288 GLU CB HB2 sing N N 289 GLU CB HB3 sing N N 290 GLU CG CD sing N N 291 GLU CG HG2 sing N N 292 GLU CG HG3 sing N N 293 GLU CD OE1 doub N N 294 GLU CD OE2 sing N N 295 GLU OE2 HE2 sing N N 296 GLU OXT HXT sing N N 297 GLY N CA sing N N 298 GLY N H sing N N 299 GLY N H2 sing N N 300 GLY CA C sing N N 301 GLY CA HA2 sing N N 302 GLY CA HA3 sing N N 303 GLY C O doub N N 304 GLY C OXT sing N N 305 GLY OXT HXT sing N N 306 HIS N CA sing N N 307 HIS N H sing N N 308 HIS N H2 sing N N 309 HIS CA C sing N N 310 HIS CA CB sing N N 311 HIS CA HA sing N N 312 HIS C O doub N N 313 HIS C OXT sing N N 314 HIS CB CG sing N N 315 HIS CB HB2 sing N N 316 HIS CB HB3 sing N N 317 HIS CG ND1 sing Y N 318 HIS CG CD2 doub Y N 319 HIS ND1 CE1 doub Y N 320 HIS ND1 HD1 sing N N 321 HIS CD2 NE2 sing Y N 322 HIS CD2 HD2 sing N N 323 HIS CE1 NE2 sing Y N 324 HIS CE1 HE1 sing N N 325 HIS NE2 HE2 sing N N 326 HIS OXT HXT sing N N 327 HOH O H1 sing N N 328 HOH O H2 sing N N 329 ILE N CA sing N N 330 ILE N H sing N N 331 ILE N H2 sing N N 332 ILE CA C sing N N 333 ILE CA CB sing N N 334 ILE CA HA sing N N 335 ILE C O doub N N 336 ILE C OXT sing N N 337 ILE CB CG1 sing N N 338 ILE CB CG2 sing N N 339 ILE CB HB sing N N 340 ILE CG1 CD1 sing N N 341 ILE CG1 HG12 sing N N 342 ILE CG1 HG13 sing N N 343 ILE CG2 HG21 sing N N 344 ILE CG2 HG22 sing N N 345 ILE CG2 HG23 sing N N 346 ILE CD1 HD11 sing N N 347 ILE CD1 HD12 sing N N 348 ILE CD1 HD13 sing N N 349 ILE OXT HXT sing N N 350 LEU N CA sing N N 351 LEU N H sing N N 352 LEU N H2 sing N N 353 LEU CA C sing N N 354 LEU CA CB sing N N 355 LEU CA HA sing N N 356 LEU C O doub N N 357 LEU C OXT sing N N 358 LEU CB CG sing N N 359 LEU CB HB2 sing N N 360 LEU CB HB3 sing N N 361 LEU CG CD1 sing N N 362 LEU CG CD2 sing N N 363 LEU CG HG sing N N 364 LEU CD1 HD11 sing N N 365 LEU CD1 HD12 sing N N 366 LEU CD1 HD13 sing N N 367 LEU CD2 HD21 sing N N 368 LEU CD2 HD22 sing N N 369 LEU CD2 HD23 sing N N 370 LEU OXT HXT sing N N 371 LYS N CA sing N N 372 LYS N H sing N N 373 LYS N H2 sing N N 374 LYS CA C sing N N 375 LYS CA CB sing N N 376 LYS CA HA sing N N 377 LYS C O doub N N 378 LYS C OXT sing N N 379 LYS CB CG sing N N 380 LYS CB HB2 sing N N 381 LYS CB HB3 sing N N 382 LYS CG CD sing N N 383 LYS CG HG2 sing N N 384 LYS CG HG3 sing N N 385 LYS CD CE sing N N 386 LYS CD HD2 sing N N 387 LYS CD HD3 sing N N 388 LYS CE NZ sing N N 389 LYS CE HE2 sing N N 390 LYS CE HE3 sing N N 391 LYS NZ HZ1 sing N N 392 LYS NZ HZ2 sing N N 393 LYS NZ HZ3 sing N N 394 LYS OXT HXT sing N N 395 MET N CA sing N N 396 MET N H sing N N 397 MET N H2 sing N N 398 MET CA C sing N N 399 MET CA CB sing N N 400 MET CA HA sing N N 401 MET C O doub N N 402 MET C OXT sing N N 403 MET CB CG sing N N 404 MET CB HB2 sing N N 405 MET CB HB3 sing N N 406 MET CG SD sing N N 407 MET CG HG2 sing N N 408 MET CG HG3 sing N N 409 MET SD CE sing N N 410 MET CE HE1 sing N N 411 MET CE HE2 sing N N 412 MET CE HE3 sing N N 413 MET OXT HXT sing N N 414 PHE N CA sing N N 415 PHE N H sing N N 416 PHE N H2 sing N N 417 PHE CA C sing N N 418 PHE CA CB sing N N 419 PHE CA HA sing N N 420 PHE C O doub N N 421 PHE C OXT sing N N 422 PHE CB CG sing N N 423 PHE CB HB2 sing N N 424 PHE CB HB3 sing N N 425 PHE CG CD1 doub Y N 426 PHE CG CD2 sing Y N 427 PHE CD1 CE1 sing Y N 428 PHE CD1 HD1 sing N N 429 PHE CD2 CE2 doub Y N 430 PHE CD2 HD2 sing N N 431 PHE CE1 CZ doub Y N 432 PHE CE1 HE1 sing N N 433 PHE CE2 CZ sing Y N 434 PHE CE2 HE2 sing N N 435 PHE CZ HZ sing N N 436 PHE OXT HXT sing N N 437 PRO N CA sing N N 438 PRO N CD sing N N 439 PRO N H sing N N 440 PRO CA C sing N N 441 PRO CA CB sing N N 442 PRO CA HA sing N N 443 PRO C O doub N N 444 PRO C OXT sing N N 445 PRO CB CG sing N N 446 PRO CB HB2 sing N N 447 PRO CB HB3 sing N N 448 PRO CG CD sing N N 449 PRO CG HG2 sing N N 450 PRO CG HG3 sing N N 451 PRO CD HD2 sing N N 452 PRO CD HD3 sing N N 453 PRO OXT HXT sing N N 454 SER N CA sing N N 455 SER N H sing N N 456 SER N H2 sing N N 457 SER CA C sing N N 458 SER CA CB sing N N 459 SER CA HA sing N N 460 SER C O doub N N 461 SER C OXT sing N N 462 SER CB OG sing N N 463 SER CB HB2 sing N N 464 SER CB HB3 sing N N 465 SER OG HG sing N N 466 SER OXT HXT sing N N 467 THR N CA sing N N 468 THR N H sing N N 469 THR N H2 sing N N 470 THR CA C sing N N 471 THR CA CB sing N N 472 THR CA HA sing N N 473 THR C O doub N N 474 THR C OXT sing N N 475 THR CB OG1 sing N N 476 THR CB CG2 sing N N 477 THR CB HB sing N N 478 THR OG1 HG1 sing N N 479 THR CG2 HG21 sing N N 480 THR CG2 HG22 sing N N 481 THR CG2 HG23 sing N N 482 THR OXT HXT sing N N 483 TRP N CA sing N N 484 TRP N H sing N N 485 TRP N H2 sing N N 486 TRP CA C sing N N 487 TRP CA CB sing N N 488 TRP CA HA sing N N 489 TRP C O doub N N 490 TRP C OXT sing N N 491 TRP CB CG sing N N 492 TRP CB HB2 sing N N 493 TRP CB HB3 sing N N 494 TRP CG CD1 doub Y N 495 TRP CG CD2 sing Y N 496 TRP CD1 NE1 sing Y N 497 TRP CD1 HD1 sing N N 498 TRP CD2 CE2 doub Y N 499 TRP CD2 CE3 sing Y N 500 TRP NE1 CE2 sing Y N 501 TRP NE1 HE1 sing N N 502 TRP CE2 CZ2 sing Y N 503 TRP CE3 CZ3 doub Y N 504 TRP CE3 HE3 sing N N 505 TRP CZ2 CH2 doub Y N 506 TRP CZ2 HZ2 sing N N 507 TRP CZ3 CH2 sing Y N 508 TRP CZ3 HZ3 sing N N 509 TRP CH2 HH2 sing N N 510 TRP OXT HXT sing N N 511 TYR N CA sing N N 512 TYR N H sing N N 513 TYR N H2 sing N N 514 TYR CA C sing N N 515 TYR CA CB sing N N 516 TYR CA HA sing N N 517 TYR C O doub N N 518 TYR C OXT sing N N 519 TYR CB CG sing N N 520 TYR CB HB2 sing N N 521 TYR CB HB3 sing N N 522 TYR CG CD1 doub Y N 523 TYR CG CD2 sing Y N 524 TYR CD1 CE1 sing Y N 525 TYR CD1 HD1 sing N N 526 TYR CD2 CE2 doub Y N 527 TYR CD2 HD2 sing N N 528 TYR CE1 CZ doub Y N 529 TYR CE1 HE1 sing N N 530 TYR CE2 CZ sing Y N 531 TYR CE2 HE2 sing N N 532 TYR CZ OH sing N N 533 TYR OH HH sing N N 534 TYR OXT HXT sing N N 535 VAL N CA sing N N 536 VAL N H sing N N 537 VAL N H2 sing N N 538 VAL CA C sing N N 539 VAL CA CB sing N N 540 VAL CA HA sing N N 541 VAL C O doub N N 542 VAL C OXT sing N N 543 VAL CB CG1 sing N N 544 VAL CB CG2 sing N N 545 VAL CB HB sing N N 546 VAL CG1 HG11 sing N N 547 VAL CG1 HG12 sing N N 548 VAL CG1 HG13 sing N N 549 VAL CG2 HG21 sing N N 550 VAL CG2 HG22 sing N N 551 VAL CG2 HG23 sing N N 552 VAL OXT HXT sing N N 553 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3JX7 'double helix' 3JX7 'b-form double helix' 3JX7 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.332 -0.192 0.224 -11.576 -4.072 -0.277 1 B_DC1:DG24_C B 1 ? C 24 ? 19 1 1 B DG 2 1_555 C DC 11 1_555 0.215 -0.065 0.209 9.326 -0.687 -2.363 2 B_DG2:DC23_C B 2 ? C 23 ? 19 1 1 B DG 3 1_555 C DC 10 1_555 -0.440 -0.131 -0.019 2.573 -6.273 -0.416 3 B_DG3:DC22_C B 3 ? C 22 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 0.228 -0.214 -0.183 2.770 -7.131 -1.206 4 B_DA4:DT21_C B 4 ? C 21 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.218 -0.126 0.002 9.124 -19.613 5.677 5 B_DC5:DG20_C B 5 ? C 20 ? 19 1 1 B DT 6 1_555 C DA 7 1_555 -0.143 -0.064 0.237 -4.925 -18.177 -1.386 6 B_DT6:DA19_C B 6 ? C 19 ? 20 1 1 B DA 8 1_555 C DT 5 1_555 0.145 -0.123 0.190 1.732 -13.675 5.895 7 B_DA8:DT17_C B 8 ? C 17 ? 20 1 1 B DC 9 1_555 C DG 4 1_555 0.324 -0.194 0.009 0.211 -8.388 -1.125 8 B_DC9:DG16_C B 9 ? C 16 ? 19 1 1 B DG 10 1_555 C DC 3 1_555 -0.327 -0.176 0.016 -0.347 -2.078 0.898 9 B_DG10:DC15_C B 10 ? C 15 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.099 -0.168 0.292 14.724 -7.264 1.816 10 B_DG11:DC14_C B 11 ? C 14 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 -0.171 -0.206 0.036 0.784 -14.138 -0.820 11 B_DG12:DC13_C B 12 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DG 2 1_555 C DC 11 1_555 0.463 -0.054 2.908 2.333 6.849 29.923 -1.299 -0.464 2.853 13.026 -4.437 30.766 1 BB_DC1DG2:DC23DG24_CC B 1 ? C 24 ? B 2 ? C 23 ? 1 B DG 2 1_555 C DC 11 1_555 B DG 3 1_555 C DC 10 1_555 -0.010 -0.463 3.492 -0.109 0.688 32.799 -0.946 -0.003 3.482 1.219 0.193 32.806 2 BB_DG2DG3:DC22DC23_CC B 2 ? C 23 ? B 3 ? C 22 ? 1 B DG 3 1_555 C DC 10 1_555 B DA 4 1_555 C DT 9 1_555 -0.358 -0.738 3.341 0.217 2.396 35.913 -1.540 0.610 3.284 3.881 -0.351 35.991 3 BB_DG3DA4:DT21DC22_CC B 3 ? C 22 ? B 4 ? C 21 ? 1 B DA 4 1_555 C DT 9 1_555 B DC 5 1_555 C DG 8 1_555 0.743 -0.959 3.086 -2.861 8.162 30.697 -3.081 -1.822 2.671 15.047 5.275 31.864 4 BB_DA4DC5:DG20DT21_CC B 4 ? C 21 ? B 5 ? C 20 ? 1 B DC 5 1_555 C DG 8 1_555 B DT 6 1_555 C DA 7 1_555 -0.775 -1.296 3.568 -2.891 9.280 36.106 -3.314 0.809 3.200 14.648 4.563 37.349 5 BB_DC5DT6:DA19DG20_CC B 5 ? C 20 ? B 6 ? C 19 ? 1 B DT 6 1_555 C DA 7 1_555 B DA 8 1_555 C DT 5 1_555 0.026 0.193 6.500 2.787 8.812 60.772 -0.639 0.236 6.465 8.656 -2.738 61.405 6 BB_DT6DA8:DT17DA19_CC B 6 ? C 19 ? B 8 ? C 17 ? 1 B DA 8 1_555 C DT 5 1_555 B DC 9 1_555 C DG 4 1_555 -0.048 -0.556 3.212 2.160 3.294 33.574 -1.475 0.422 3.136 5.679 -3.723 33.798 7 BB_DA8DC9:DG16DT17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DC 9 1_555 C DG 4 1_555 B DG 10 1_555 C DC 3 1_555 0.141 -0.379 3.239 1.271 8.315 33.519 -1.898 -0.046 3.064 14.142 -2.162 34.529 8 BB_DC9DG10:DC15DG16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 0.541 -0.584 2.945 -3.276 7.293 27.295 -2.644 -1.757 2.622 15.050 6.760 28.421 9 BB_DG10DG11:DC14DC15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 B DG 11 1_555 C DC 2 1_555 B DG 12 1_555 C DC 1 1_555 -0.793 -0.630 3.552 -4.488 1.952 40.443 -1.142 0.596 3.583 2.811 6.464 40.725 10 BB_DG11DG12:DC13DC14_CC B 11 ? C 14 ? B 12 ? C 13 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BVS _pdbx_initial_refinement_model.details 'PDB 3BVS' #