HEADER TRANSCRIPTION 23-SEP-09 3JZB TITLE CRYSTAL STRUCTURE OF TR-ALFA BOUND TO THE SELECTIVE THYROMIMETIC TRIAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: THRA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 148-410, LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: THYROID HORMONE RECEPTOR, ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRA, HCG_1749555; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28(A) KEYWDS TRIAC, TR, THYROID, ENTROPY, DNA-BINDING, METAL-BINDING, NUCLEUS, KEYWDS 2 RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO REVDAT 3 06-SEP-23 3JZB 1 REMARK SEQADV LINK REVDAT 2 01-SEP-10 3JZB 1 JRNL REVDAT 1 08-DEC-09 3JZB 0 JRNL AUTH L.MARTINEZ,A.S.NASCIMENTO,F.M.NUNES,K.PHILLIPS,R.APARICIO, JRNL AUTH 2 S.M.DIAS,A.C.FIGUEIRA,J.H.LIN,P.NGUYEN,J.W.APRILETTI, JRNL AUTH 3 F.A.NEVES,J.D.BAXTER,P.WEBB,M.S.SKAF,I.POLIKARPOV JRNL TITL GAINING LIGAND SELECTIVITY IN THYROID HORMONE RECEPTORS VIA JRNL TITL 2 ENTROPY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 20717 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19926848 JRNL DOI 10.1073/PNAS.0911024106 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_159) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 32969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.1941 - 4.5948 1.00 2854 156 0.1767 0.1849 REMARK 3 2 4.5948 - 3.6473 1.00 2715 167 0.1410 0.1579 REMARK 3 3 3.6473 - 3.1863 1.00 2685 141 0.1584 0.1701 REMARK 3 4 3.1863 - 2.8950 0.99 2661 137 0.1705 0.2153 REMARK 3 5 2.8950 - 2.6875 0.99 2642 149 0.1618 0.2016 REMARK 3 6 2.6875 - 2.5291 0.98 2609 144 0.1560 0.1973 REMARK 3 7 2.5291 - 2.4024 0.98 2625 120 0.1519 0.1874 REMARK 3 8 2.4024 - 2.2979 0.97 2577 126 0.1685 0.2047 REMARK 3 9 2.2979 - 2.2094 0.95 2521 131 0.1736 0.2290 REMARK 3 10 2.2094 - 2.1332 0.95 2502 137 0.1800 0.2155 REMARK 3 11 2.1332 - 2.0665 0.94 2494 145 0.2035 0.2673 REMARK 3 12 2.0665 - 2.0070 0.92 2400 131 0.2451 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 41.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2222 REMARK 3 ANGLE : 1.662 3003 REMARK 3 CHIRALITY : 0.092 324 REMARK 3 PLANARITY : 0.048 391 REMARK 3 DIHEDRAL : 19.612 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 144:156) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0196 1.5192 53.3492 REMARK 3 T TENSOR REMARK 3 T11: 0.5068 T22: 0.3785 REMARK 3 T33: 0.5324 T12: 0.0320 REMARK 3 T13: 0.2398 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 3.9897 L22: 3.5055 REMARK 3 L33: 3.2119 L12: -0.9527 REMARK 3 L13: -1.3006 L23: 2.6277 REMARK 3 S TENSOR REMARK 3 S11: -0.4611 S12: 0.6821 S13: -0.2016 REMARK 3 S21: 0.3572 S22: 0.2269 S23: -0.4501 REMARK 3 S31: 1.1509 S32: 0.0656 S33: 0.4157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 157:181) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6780 21.2827 49.1105 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2802 REMARK 3 T33: 0.1750 T12: 0.0096 REMARK 3 T13: 0.0495 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4578 L22: 0.3234 REMARK 3 L33: 0.5913 L12: -0.0253 REMARK 3 L13: -0.4766 L23: -0.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: -0.3956 S13: 0.0081 REMARK 3 S21: 0.1206 S22: 0.1037 S23: -0.0186 REMARK 3 S31: -0.0543 S32: -0.1413 S33: -0.0257 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 184:219) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9519 44.9343 25.7392 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.3012 REMARK 3 T33: 0.4274 T12: 0.0328 REMARK 3 T13: 0.0413 T23: 0.1122 REMARK 3 L TENSOR REMARK 3 L11: 0.3738 L22: 1.2185 REMARK 3 L33: 1.1525 L12: 0.5761 REMARK 3 L13: -0.0709 L23: -0.7280 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: 0.2186 S13: 0.2566 REMARK 3 S21: -0.0904 S22: 0.2271 S23: 0.5051 REMARK 3 S31: 0.0713 S32: -0.4036 S33: -0.2148 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 220:262) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5126 32.0708 42.3721 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.1897 REMARK 3 T33: 0.1659 T12: -0.0204 REMARK 3 T13: -0.0238 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.7462 L22: 1.0558 REMARK 3 L33: 0.8261 L12: -0.4754 REMARK 3 L13: -0.4503 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.1672 S13: 0.1991 REMARK 3 S21: 0.1258 S22: -0.0227 S23: -0.0979 REMARK 3 S31: -0.1565 S32: 0.1123 S33: 0.0244 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 263:309) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0511 34.6578 27.4560 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.2935 REMARK 3 T33: 0.3111 T12: 0.0152 REMARK 3 T13: -0.0442 T23: 0.0925 REMARK 3 L TENSOR REMARK 3 L11: 0.5666 L22: 1.4707 REMARK 3 L33: 0.7434 L12: 0.3640 REMARK 3 L13: -0.1069 L23: -0.5188 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.2767 S13: 0.2498 REMARK 3 S21: -0.1848 S22: 0.2790 S23: 0.5191 REMARK 3 S31: -0.0856 S32: -0.4038 S33: -0.2278 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 310:356) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9615 18.7706 41.8632 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1214 REMARK 3 T33: 0.1287 T12: 0.0157 REMARK 3 T13: 0.0139 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3816 L22: 1.0470 REMARK 3 L33: 1.6489 L12: 0.5562 REMARK 3 L13: -0.3873 L23: -0.1575 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.0407 S13: -0.1794 REMARK 3 S21: 0.0322 S22: -0.0145 S23: -0.0832 REMARK 3 S31: 0.0121 S32: 0.0593 S33: 0.0345 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 357:387) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5919 22.6852 29.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2161 REMARK 3 T33: 0.2094 T12: 0.0023 REMARK 3 T13: 0.0225 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1184 L22: 1.2229 REMARK 3 L33: 0.5959 L12: -0.1172 REMARK 3 L13: -0.1425 L23: -0.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: 0.2396 S13: -0.0802 REMARK 3 S21: -0.2448 S22: 0.0341 S23: -0.2810 REMARK 3 S31: 0.1008 S32: -0.1943 S33: 0.1430 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 388:407) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9576 43.3725 29.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0905 REMARK 3 T33: 0.1439 T12: -0.0438 REMARK 3 T13: -0.0250 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 0.2809 L22: 0.5702 REMARK 3 L33: 0.5920 L12: 0.2036 REMARK 3 L13: -0.0281 L23: -0.5266 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: 0.0178 S13: -0.0517 REMARK 3 S21: 0.1221 S22: -0.3924 S23: -0.3894 REMARK 3 S31: -0.1998 S32: 0.4906 S33: 0.1695 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 59.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : 0.81700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2H79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M SODIUM CACODYLATE, 0.1M SODIUM REMARK 280 ACETATE THREEHYDRATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.17750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.17750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.41250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 408 REMARK 465 GLU A 409 REMARK 465 VAL A 410 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 182 REMARK 475 SER A 183 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 190 CD CE NZ REMARK 480 GLU A 301 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 319 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 384 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 156 -22.32 -150.74 REMARK 500 GLN A 181 119.97 78.92 REMARK 500 ARG A 188 34.73 -97.93 REMARK 500 ASP A 328 48.00 -80.93 REMARK 500 CAS A 334 56.23 -91.90 REMARK 500 GLU A 406 -76.09 -39.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4HY A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JZC RELATED DB: PDB DBREF 3JZB A 148 410 UNP Q6FH41 Q6FH41_HUMAN 148 410 SEQADV 3JZB GLY A 144 UNP Q6FH41 EXPRESSION TAG SEQADV 3JZB SER A 145 UNP Q6FH41 EXPRESSION TAG SEQADV 3JZB HIS A 146 UNP Q6FH41 EXPRESSION TAG SEQADV 3JZB MET A 147 UNP Q6FH41 EXPRESSION TAG SEQRES 1 A 267 GLY SER HIS MET GLU GLU MET ILE ARG SER LEU GLN GLN SEQRES 2 A 267 ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU ILE HIS SEQRES 3 A 267 ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA GLN GLY SEQRES 4 A 267 SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO ASP ASP SEQRES 5 A 267 ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP GLY ASP SEQRES 6 A 267 LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR LYS ILE SEQRES 7 A 267 ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE ALA LYS SEQRES 8 A 267 LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU ASP GLN SEQRES 9 A 267 ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE MET SER SEQRES 10 A 267 LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER ASP THR SEQRES 11 A 267 LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG GLU GLN SEQRES 12 A 267 LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP ALA ILE SEQRES 13 A 267 PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN LEU ASP SEQRES 14 A 267 ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU LEU MET SEQRES 15 A 267 SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP LYS ILE SEQRES 16 A 267 GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE GLU HIS SEQRES 17 A 267 TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS PHE TRP SEQRES 18 A 267 PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG MET ILE SEQRES 19 A 267 GLY ALA CAS HIS ALA SER ARG PHE LEU HIS MET LYS VAL SEQRES 20 A 267 GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE LEU GLU SEQRES 21 A 267 VAL PHE GLU ASP GLN GLU VAL MODRES 3JZB CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3JZB CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3JZB CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 3JZB CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 244 9 HET CAS A 334 9 HET CAS A 380 9 HET CAS A 392 11 HET 4HY A 1 21 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM 4HY [4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC HETNAM 2 4HY ACID FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 4HY C14 H9 I3 O4 FORMUL 3 HOH *246(H2 O) HELIX 1 1 SER A 145 ARG A 152 1 8 HELIX 2 2 THR A 161 THR A 178 1 18 HELIX 3 3 ASP A 211 ILE A 221 1 11 HELIX 4 4 ILE A 221 LYS A 235 1 15 HELIX 5 5 LEU A 236 GLU A 241 1 6 HELIX 6 6 PRO A 243 VAL A 265 1 23 HELIX 7 7 LYS A 283 GLY A 290 1 8 HELIX 8 8 GLY A 293 SER A 307 1 15 HELIX 9 9 ALA A 308 ASN A 310 5 3 HELIX 10 10 ASP A 312 MET A 325 1 14 HELIX 11 11 CAS A 334 LYS A 357 1 24 HELIX 12 12 HIS A 362 CAS A 392 1 31 HELIX 13 13 PRO A 393 PHE A 397 5 5 HELIX 14 14 PRO A 398 GLU A 406 1 9 SHEET 1 A 4 LYS A 190 PHE A 191 0 SHEET 2 A 4 MET A 280 VAL A 282 1 O ALA A 281 N LYS A 190 SHEET 3 A 4 THR A 273 LEU A 276 -1 N LEU A 276 O MET A 280 SHEET 4 A 4 TYR A 267 ASP A 268 -1 N ASP A 268 O THR A 273 LINK C PRO A 243 N CAS A 244 1555 1555 1.34 LINK C CAS A 244 N GLU A 245 1555 1555 1.33 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.33 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.32 LINK C GLU A 391 N CAS A 392 1555 1555 1.33 LINK C CAS A 392 N PRO A 393 1555 1555 1.34 SITE 1 AC1 12 PHE A 218 MET A 259 ARG A 262 ALA A 263 SITE 2 AC1 12 ARG A 266 LEU A 276 SER A 277 GLY A 290 SITE 3 AC1 12 LEU A 292 ILE A 299 HIS A 381 PHE A 401 CRYST1 60.020 80.825 102.355 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009770 0.00000