data_3K10 # _entry.id 3K10 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3K10 RCSB RCSB055409 WWPDB D_1000055409 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3K0X _pdbx_database_related.details 'Crystal structure of telomere capping protein Ten1 from Saccharomyces pombe' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3K10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gelinas, A.D.' 1 'Reyes, F.E.' 2 'Batey, R.T.' 3 'Wuttke, D.S.' 4 # _citation.id primary _citation.title 'Telomere capping proteins are structurally related to RPA with an additional telomere-specific domain.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 19298 _citation.page_last 19303 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19884503 _citation.pdbx_database_id_DOI 10.1073/pnas.0909203106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gelinas, A.D.' 1 primary 'Paschini, M.' 2 primary 'Reyes, F.E.' 3 primary 'Heroux, A.' 4 primary 'Batey, R.T.' 5 primary 'Lundblad, V.' 6 primary 'Wuttke, D.S.' 7 # _cell.entry_id 3K10 _cell.length_a 52.709 _cell.length_b 52.709 _cell.length_c 186.552 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K10 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein STN1' 20556.893 1 ? ? 'UNP residues 313-491' ? 2 water nat water 18.015 146 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TSAKSNLMLILLGLQMKEISNSDLYKLKEVRSVVTSLASFLFQQQNVGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKT SETFDLLPLKNLFEYAEKRISVLMKLQCYTGTVQLSHVQEKLHLPYITTNGIVDVFKECLKRTKKQYPEVLKNWWIDLDP KNGMEDQNSGILLHLEYAA ; _entity_poly.pdbx_seq_one_letter_code_can ;TSAKSNLMLILLGLQMKEISNSDLYKLKEVRSVVTSLASFLFQQQNVGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKT SETFDLLPLKNLFEYAEKRISVLMKLQCYTGTVQLSHVQEKLHLPYITTNGIVDVFKECLKRTKKQYPEVLKNWWIDLDP KNGMEDQNSGILLHLEYAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 ALA n 1 4 LYS n 1 5 SER n 1 6 ASN n 1 7 LEU n 1 8 MET n 1 9 LEU n 1 10 ILE n 1 11 LEU n 1 12 LEU n 1 13 GLY n 1 14 LEU n 1 15 GLN n 1 16 MET n 1 17 LYS n 1 18 GLU n 1 19 ILE n 1 20 SER n 1 21 ASN n 1 22 SER n 1 23 ASP n 1 24 LEU n 1 25 TYR n 1 26 LYS n 1 27 LEU n 1 28 LYS n 1 29 GLU n 1 30 VAL n 1 31 ARG n 1 32 SER n 1 33 VAL n 1 34 VAL n 1 35 THR n 1 36 SER n 1 37 LEU n 1 38 ALA n 1 39 SER n 1 40 PHE n 1 41 LEU n 1 42 PHE n 1 43 GLN n 1 44 GLN n 1 45 GLN n 1 46 ASN n 1 47 VAL n 1 48 GLY n 1 49 VAL n 1 50 MET n 1 51 LYS n 1 52 SER n 1 53 PHE n 1 54 ASP n 1 55 SER n 1 56 LEU n 1 57 GLU n 1 58 LYS n 1 59 GLU n 1 60 ALA n 1 61 PHE n 1 62 ARG n 1 63 ASP n 1 64 LEU n 1 65 VAL n 1 66 ASN n 1 67 ARG n 1 68 LEU n 1 69 VAL n 1 70 SER n 1 71 GLN n 1 72 GLY n 1 73 LEU n 1 74 ILE n 1 75 GLY n 1 76 LEU n 1 77 LYS n 1 78 ASP n 1 79 LYS n 1 80 THR n 1 81 SER n 1 82 GLU n 1 83 THR n 1 84 PHE n 1 85 ASP n 1 86 LEU n 1 87 LEU n 1 88 PRO n 1 89 LEU n 1 90 LYS n 1 91 ASN n 1 92 LEU n 1 93 PHE n 1 94 GLU n 1 95 TYR n 1 96 ALA n 1 97 GLU n 1 98 LYS n 1 99 ARG n 1 100 ILE n 1 101 SER n 1 102 VAL n 1 103 LEU n 1 104 MET n 1 105 LYS n 1 106 LEU n 1 107 GLN n 1 108 CYS n 1 109 TYR n 1 110 THR n 1 111 GLY n 1 112 THR n 1 113 VAL n 1 114 GLN n 1 115 LEU n 1 116 SER n 1 117 HIS n 1 118 VAL n 1 119 GLN n 1 120 GLU n 1 121 LYS n 1 122 LEU n 1 123 HIS n 1 124 LEU n 1 125 PRO n 1 126 TYR n 1 127 ILE n 1 128 THR n 1 129 THR n 1 130 ASN n 1 131 GLY n 1 132 ILE n 1 133 VAL n 1 134 ASP n 1 135 VAL n 1 136 PHE n 1 137 LYS n 1 138 GLU n 1 139 CYS n 1 140 LEU n 1 141 LYS n 1 142 ARG n 1 143 THR n 1 144 LYS n 1 145 LYS n 1 146 GLN n 1 147 TYR n 1 148 PRO n 1 149 GLU n 1 150 VAL n 1 151 LEU n 1 152 LYS n 1 153 ASN n 1 154 TRP n 1 155 TRP n 1 156 ILE n 1 157 ASP n 1 158 LEU n 1 159 ASP n 1 160 PRO n 1 161 LYS n 1 162 ASN n 1 163 GLY n 1 164 MET n 1 165 GLU n 1 166 ASP n 1 167 GLN n 1 168 ASN n 1 169 SER n 1 170 GLY n 1 171 ILE n 1 172 LEU n 1 173 LEU n 1 174 HIS n 1 175 LEU n 1 176 GLU n 1 177 TYR n 1 178 ALA n 1 179 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'D4456, STN1, YD8554.15, YDR082W' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET duet' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code STN1_YEAST _struct_ref.pdbx_db_accession P38960 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TSAKSNLMLILLGLQMKEISNSDLYKLKEVRSVVTSLASFLFQQQNVGVMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKT SETFDLLPLKNLFEYAEKRISVLMKLQCYTGTVQLSHVQEKLHLPYITTNGIVDVFKECLKRTKKQYPEVLKNWWIDLDP KNGMEDQNSGILLHLEYAA ; _struct_ref.pdbx_align_begin 313 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3K10 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P38960 _struct_ref_seq.db_align_beg 313 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 491 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 313 _struct_ref_seq.pdbx_auth_seq_align_end 491 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.entry_id 3K10 _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 60.97 3.15 ? ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' 8.4 290 '15% w/v PEG 1000, 10 mM EDTA, 0.1 M Tris-HCl pH 8.4, 10mM PtCl4, VAPOR DIFFUSION, HANGING DROP, temperature 290K' ? ? 2 'VAPOR DIFFUSION, HANGING DROP' 8.4 290 '15% w/v PEG 1000, 10 mM EDTA, 0.1 M Tris-HCl pH 8.4, 6mM KAuCl4, VAPOR DIFFUSION, HANGING DROP, temperature 290K' ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 93.15 ? 1 2 93.15 ? 1 3 93.15 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IV' 2008-08-04 ? 2 'IMAGE PLATE' 'RIGAKU RAXIS IV' 2008-08-04 ? 3 CCD 'ADSC QUANTUM 315r' 2009-06-19 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray 3 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.502 1.0 2 1.0809 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 'ROTATING ANODE' RIGAKU 1.502 ? ? ? 2 'ROTATING ANODE' RIGAKU 1.502 ? ? ? 3 SYNCHROTRON 'NSLS BEAMLINE X29A' 1.0809 ? NSLS X29A # _reflns.entry_id 3K10 _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 50.0 _reflns.number_obs 13389 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 14.300 _reflns.pdbx_chi_squared 1.494 _reflns.pdbx_redundancy 8.600 _reflns.percent_possible_obs 85.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2,3 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.30 2.38 ? ? ? 0.421 ? ? 1.026 4.60 ? 429 35.50 ? 1 2.38 2.48 ? ? ? 0.431 ? ? 1.140 7.80 ? 671 55.50 ? 2 2.48 2.59 ? ? ? 0.423 ? ? 2.047 7.80 ? 872 71.90 ? 3 2.59 2.73 ? ? ? 0.345 ? ? 1.703 7.70 ? 1091 89.40 ? 4 2.73 2.90 ? ? ? 0.266 ? ? 1.404 8.40 ? 1213 98.10 ? 5 2.90 3.12 ? ? ? 0.157 ? ? 1.262 8.80 ? 1233 99.80 ? 6 3.12 3.44 ? ? ? 0.102 ? ? 1.426 9.10 ? 1227 99.80 ? 7 3.44 3.93 ? ? ? 0.064 ? ? 1.729 9.00 ? 1267 99.80 ? 8 3.93 4.95 ? ? ? 0.040 ? ? 1.541 9.40 ? 1288 99.90 ? 9 4.95 50.00 ? ? ? 0.032 ? ? 1.359 9.70 ? 1419 99.90 ? 10 # _refine.entry_id 3K10 _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 1480.00 _refine.ls_percent_reflns_obs 77.300 _refine.ls_number_reflns_obs 10710 _refine.ls_R_factor_R_work 0.246 _refine.ls_R_factor_R_free 0.301 _refine.ls_percent_reflns_R_free 7.400 _refine.ls_number_reflns_R_free 1406 _refine.B_iso_mean 55.273 _refine.solvent_model_param_bsol 47.133 _refine.aniso_B[1][1] 10.923 _refine.aniso_B[2][2] 10.923 _refine.aniso_B[3][3] -21.846 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct SIRAS _refine.overall_FOM_work_R_set 0.742 _refine.B_iso_max 114.95 _refine.B_iso_min 30.75 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1348 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 1494 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007865 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.32016 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.500 2.530 28 . 263 . 0.389 0.370 . 30 . 293 . . 'X-RAY DIFFRACTION' 2.530 2.560 28 . 293 . 0.423 0.389 . 41 . 334 . . 'X-RAY DIFFRACTION' 2.560 2.600 28 . 302 . 0.393 0.379 . 37 . 339 . . 'X-RAY DIFFRACTION' 2.600 2.630 28 . 358 . 0.454 0.458 . 29 . 387 . . 'X-RAY DIFFRACTION' 2.630 2.670 28 . 333 . 0.398 0.472 . 62 . 395 . . 'X-RAY DIFFRACTION' 2.670 2.710 28 . 376 . 0.392 0.389 . 44 . 420 . . 'X-RAY DIFFRACTION' 2.710 2.750 28 . 452 . 0.378 0.348 . 49 . 501 . . 'X-RAY DIFFRACTION' 2.750 2.800 28 . 448 . 0.329 0.518 . 36 . 484 . . 'X-RAY DIFFRACTION' 2.800 2.840 28 . 481 . 0.333 0.356 . 42 . 523 . . 'X-RAY DIFFRACTION' 2.840 2.900 28 . 525 . 0.290 0.306 . 40 . 565 . . 'X-RAY DIFFRACTION' 2.900 2.950 28 . 490 . 0.278 0.371 . 47 . 537 . . 'X-RAY DIFFRACTION' 2.950 3.010 28 . 496 . 0.332 0.369 . 47 . 543 . . 'X-RAY DIFFRACTION' 3.010 3.080 28 . 512 . 0.313 0.463 . 63 . 575 . . 'X-RAY DIFFRACTION' 3.080 3.150 28 . 525 . 0.289 0.449 . 44 . 569 . . 'X-RAY DIFFRACTION' 3.150 3.230 28 . 528 . 0.319 0.342 . 45 . 573 . . 'X-RAY DIFFRACTION' 3.230 3.310 28 . 530 . 0.281 0.388 . 49 . 579 . . 'X-RAY DIFFRACTION' 3.310 3.410 28 . 550 . 0.296 0.372 . 52 . 602 . . 'X-RAY DIFFRACTION' 3.410 3.520 28 . 538 . 0.278 0.298 . 69 . 607 . . 'X-RAY DIFFRACTION' 3.520 3.640 28 . 512 . 0.215 0.284 . 50 . 562 . . 'X-RAY DIFFRACTION' 3.640 3.790 28 . 548 . 0.188 0.247 . 72 . 620 . . 'X-RAY DIFFRACTION' 3.790 3.960 28 . 536 . 0.236 0.283 . 53 . 589 . . 'X-RAY DIFFRACTION' 3.960 4.170 28 . 557 . 0.187 0.222 . 44 . 601 . . 'X-RAY DIFFRACTION' 4.170 4.430 28 . 550 . 0.169 0.225 . 63 . 613 . . 'X-RAY DIFFRACTION' 4.430 4.760 28 . 559 . 0.181 0.254 . 50 . 609 . . 'X-RAY DIFFRACTION' 4.760 5.240 28 . 555 . 0.169 0.230 . 51 . 606 . . 'X-RAY DIFFRACTION' 5.240 5.980 28 . 551 . 0.286 0.355 . 62 . 613 . . 'X-RAY DIFFRACTION' 5.980 7.460 28 . 551 . 0.282 0.273 . 68 . 619 . . 'X-RAY DIFFRACTION' 7.460 20.000 28 . 544 . 0.212 0.259 . 67 . 611 . . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3K10 _struct.title 'Crystal structure of telomere capping protein Stn1 from Saccharomyces cerevisiae' _struct.pdbx_descriptor 'Protein STN1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3K10 _struct_keywords.text 'winged helix turn helix, telomere capping, Chromosomal protein, Phosphoprotein, Telomere, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 3 ? GLY A 13 ? ALA A 315 GLY A 325 1 ? 11 HELX_P HELX_P2 2 ASN A 21 ? LEU A 27 ? ASN A 333 LEU A 339 1 ? 7 HELX_P HELX_P3 3 LEU A 27 ? GLN A 45 ? LEU A 339 GLN A 357 1 ? 19 HELX_P HELX_P4 4 SER A 52 ? SER A 70 ? SER A 364 SER A 382 1 ? 19 HELX_P HELX_P5 5 LEU A 86 ? GLN A 107 ? LEU A 398 GLN A 419 1 ? 22 HELX_P HELX_P6 6 LEU A 115 ? LEU A 122 ? LEU A 427 LEU A 434 1 ? 8 HELX_P HELX_P7 7 THR A 128 ? TYR A 147 ? THR A 440 TYR A 459 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 108 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 420 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 420 _struct_conn.ptnr2_symmetry 8_772 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.600 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 18 ? SER A 20 ? GLU A 330 SER A 332 A 2 THR A 83 ? ASP A 85 ? THR A 395 ASP A 397 A 3 GLY A 75 ? ASP A 78 ? GLY A 387 ASP A 390 B 1 THR A 110 ? GLN A 114 ? THR A 422 GLN A 426 B 2 GLY A 170 ? TYR A 177 ? GLY A 482 TYR A 489 B 3 LEU A 151 ? LEU A 158 ? LEU A 463 LEU A 470 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 19 ? N ILE A 331 O PHE A 84 ? O PHE A 396 A 2 3 O ASP A 85 ? O ASP A 397 N GLY A 75 ? N GLY A 387 B 1 2 N GLY A 111 ? N GLY A 423 O LEU A 173 ? O LEU A 485 B 2 3 O HIS A 174 ? O HIS A 486 N TRP A 155 ? N TRP A 467 # _atom_sites.entry_id 3K10 _atom_sites.fract_transf_matrix[1][1] 0.018972 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018972 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005360 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 313 313 THR THR A . n A 1 2 SER 2 314 314 SER SER A . n A 1 3 ALA 3 315 315 ALA ALA A . n A 1 4 LYS 4 316 316 LYS LYS A . n A 1 5 SER 5 317 317 SER SER A . n A 1 6 ASN 6 318 318 ASN ASN A . n A 1 7 LEU 7 319 319 LEU LEU A . n A 1 8 MET 8 320 320 MET MET A . n A 1 9 LEU 9 321 321 LEU LEU A . n A 1 10 ILE 10 322 322 ILE ILE A . n A 1 11 LEU 11 323 323 LEU LEU A . n A 1 12 LEU 12 324 324 LEU LEU A . n A 1 13 GLY 13 325 325 GLY GLY A . n A 1 14 LEU 14 326 326 LEU LEU A . n A 1 15 GLN 15 327 327 GLN GLN A . n A 1 16 MET 16 328 328 MET MET A . n A 1 17 LYS 17 329 329 LYS ALA A . n A 1 18 GLU 18 330 330 GLU GLU A . n A 1 19 ILE 19 331 331 ILE ILE A . n A 1 20 SER 20 332 332 SER SER A . n A 1 21 ASN 21 333 333 ASN ASN A . n A 1 22 SER 22 334 334 SER SER A . n A 1 23 ASP 23 335 335 ASP ASP A . n A 1 24 LEU 24 336 336 LEU LEU A . n A 1 25 TYR 25 337 337 TYR TYR A . n A 1 26 LYS 26 338 338 LYS ALA A . n A 1 27 LEU 27 339 339 LEU LEU A . n A 1 28 LYS 28 340 340 LYS ALA A . n A 1 29 GLU 29 341 341 GLU GLU A . n A 1 30 VAL 30 342 342 VAL VAL A . n A 1 31 ARG 31 343 343 ARG ALA A . n A 1 32 SER 32 344 344 SER SER A . n A 1 33 VAL 33 345 345 VAL VAL A . n A 1 34 VAL 34 346 346 VAL VAL A . n A 1 35 THR 35 347 347 THR THR A . n A 1 36 SER 36 348 348 SER SER A . n A 1 37 LEU 37 349 349 LEU LEU A . n A 1 38 ALA 38 350 350 ALA ALA A . n A 1 39 SER 39 351 351 SER SER A . n A 1 40 PHE 40 352 352 PHE PHE A . n A 1 41 LEU 41 353 353 LEU LEU A . n A 1 42 PHE 42 354 354 PHE PHE A . n A 1 43 GLN 43 355 355 GLN GLN A . n A 1 44 GLN 44 356 356 GLN GLN A . n A 1 45 GLN 45 357 357 GLN GLN A . n A 1 46 ASN 46 358 358 ASN ASN A . n A 1 47 VAL 47 359 359 VAL VAL A . n A 1 48 GLY 48 360 360 GLY GLY A . n A 1 49 VAL 49 361 361 VAL VAL A . n A 1 50 MET 50 362 362 MET MET A . n A 1 51 LYS 51 363 363 LYS LYS A . n A 1 52 SER 52 364 364 SER SER A . n A 1 53 PHE 53 365 365 PHE PHE A . n A 1 54 ASP 54 366 366 ASP ASP A . n A 1 55 SER 55 367 367 SER SER A . n A 1 56 LEU 56 368 368 LEU LEU A . n A 1 57 GLU 57 369 369 GLU GLU A . n A 1 58 LYS 58 370 370 LYS LYS A . n A 1 59 GLU 59 371 371 GLU GLU A . n A 1 60 ALA 60 372 372 ALA ALA A . n A 1 61 PHE 61 373 373 PHE PHE A . n A 1 62 ARG 62 374 374 ARG ARG A . n A 1 63 ASP 63 375 375 ASP ASP A . n A 1 64 LEU 64 376 376 LEU LEU A . n A 1 65 VAL 65 377 377 VAL VAL A . n A 1 66 ASN 66 378 378 ASN ASN A . n A 1 67 ARG 67 379 379 ARG ARG A . n A 1 68 LEU 68 380 380 LEU LEU A . n A 1 69 VAL 69 381 381 VAL VAL A . n A 1 70 SER 70 382 382 SER SER A . n A 1 71 GLN 71 383 383 GLN GLN A . n A 1 72 GLY 72 384 384 GLY GLY A . n A 1 73 LEU 73 385 385 LEU LEU A . n A 1 74 ILE 74 386 386 ILE ILE A . n A 1 75 GLY 75 387 387 GLY GLY A . n A 1 76 LEU 76 388 388 LEU LEU A . n A 1 77 LYS 77 389 389 LYS LYS A . n A 1 78 ASP 78 390 390 ASP ASP A . n A 1 79 LYS 79 391 391 LYS LYS A . n A 1 80 THR 80 392 392 THR THR A . n A 1 81 SER 81 393 393 SER SER A . n A 1 82 GLU 82 394 394 GLU GLU A . n A 1 83 THR 83 395 395 THR THR A . n A 1 84 PHE 84 396 396 PHE PHE A . n A 1 85 ASP 85 397 397 ASP ASP A . n A 1 86 LEU 86 398 398 LEU LEU A . n A 1 87 LEU 87 399 399 LEU LEU A . n A 1 88 PRO 88 400 400 PRO PRO A . n A 1 89 LEU 89 401 401 LEU LEU A . n A 1 90 LYS 90 402 402 LYS LYS A . n A 1 91 ASN 91 403 403 ASN ASN A . n A 1 92 LEU 92 404 404 LEU LEU A . n A 1 93 PHE 93 405 405 PHE PHE A . n A 1 94 GLU 94 406 406 GLU GLU A . n A 1 95 TYR 95 407 407 TYR TYR A . n A 1 96 ALA 96 408 408 ALA ALA A . n A 1 97 GLU 97 409 409 GLU GLU A . n A 1 98 LYS 98 410 410 LYS LYS A . n A 1 99 ARG 99 411 411 ARG ARG A . n A 1 100 ILE 100 412 412 ILE ILE A . n A 1 101 SER 101 413 413 SER SER A . n A 1 102 VAL 102 414 414 VAL VAL A . n A 1 103 LEU 103 415 415 LEU LEU A . n A 1 104 MET 104 416 416 MET MET A . n A 1 105 LYS 105 417 417 LYS LYS A . n A 1 106 LEU 106 418 418 LEU LEU A . n A 1 107 GLN 107 419 419 GLN GLN A . n A 1 108 CYS 108 420 420 CYS CYS A . n A 1 109 TYR 109 421 421 TYR TYR A . n A 1 110 THR 110 422 422 THR THR A . n A 1 111 GLY 111 423 423 GLY GLY A . n A 1 112 THR 112 424 424 THR THR A . n A 1 113 VAL 113 425 425 VAL VAL A . n A 1 114 GLN 114 426 426 GLN GLN A . n A 1 115 LEU 115 427 427 LEU LEU A . n A 1 116 SER 116 428 428 SER SER A . n A 1 117 HIS 117 429 429 HIS HIS A . n A 1 118 VAL 118 430 430 VAL VAL A . n A 1 119 GLN 119 431 431 GLN GLN A . n A 1 120 GLU 120 432 432 GLU GLU A . n A 1 121 LYS 121 433 433 LYS LYS A . n A 1 122 LEU 122 434 434 LEU LEU A . n A 1 123 HIS 123 435 435 HIS HIS A . n A 1 124 LEU 124 436 436 LEU LEU A . n A 1 125 PRO 125 437 437 PRO PRO A . n A 1 126 TYR 126 438 438 TYR TYR A . n A 1 127 ILE 127 439 439 ILE ILE A . n A 1 128 THR 128 440 440 THR THR A . n A 1 129 THR 129 441 441 THR THR A . n A 1 130 ASN 130 442 442 ASN ASN A . n A 1 131 GLY 131 443 443 GLY GLY A . n A 1 132 ILE 132 444 444 ILE ILE A . n A 1 133 VAL 133 445 445 VAL VAL A . n A 1 134 ASP 134 446 446 ASP ASP A . n A 1 135 VAL 135 447 447 VAL VAL A . n A 1 136 PHE 136 448 448 PHE PHE A . n A 1 137 LYS 137 449 449 LYS LYS A . n A 1 138 GLU 138 450 450 GLU GLU A . n A 1 139 CYS 139 451 451 CYS CYS A . n A 1 140 LEU 140 452 452 LEU LEU A . n A 1 141 LYS 141 453 453 LYS LYS A . n A 1 142 ARG 142 454 454 ARG ARG A . n A 1 143 THR 143 455 455 THR THR A . n A 1 144 LYS 144 456 456 LYS LYS A . n A 1 145 LYS 145 457 457 LYS LYS A . n A 1 146 GLN 146 458 458 GLN GLN A . n A 1 147 TYR 147 459 459 TYR TYR A . n A 1 148 PRO 148 460 460 PRO PRO A . n A 1 149 GLU 149 461 461 GLU GLU A . n A 1 150 VAL 150 462 462 VAL VAL A . n A 1 151 LEU 151 463 463 LEU LEU A . n A 1 152 LYS 152 464 464 LYS LYS A . n A 1 153 ASN 153 465 465 ASN ASN A . n A 1 154 TRP 154 466 466 TRP TRP A . n A 1 155 TRP 155 467 467 TRP TRP A . n A 1 156 ILE 156 468 468 ILE ILE A . n A 1 157 ASP 157 469 469 ASP ASP A . n A 1 158 LEU 158 470 470 LEU LEU A . n A 1 159 ASP 159 471 471 ASP ASP A . n A 1 160 PRO 160 472 ? ? ? A . n A 1 161 LYS 161 473 ? ? ? A . n A 1 162 ASN 162 474 ? ? ? A . n A 1 163 GLY 163 475 ? ? ? A . n A 1 164 MET 164 476 ? ? ? A . n A 1 165 GLU 165 477 ? ? ? A . n A 1 166 ASP 166 478 ? ? ? A . n A 1 167 GLN 167 479 ? ? ? A . n A 1 168 ASN 168 480 ? ? ? A . n A 1 169 SER 169 481 481 SER SER A . n A 1 170 GLY 170 482 482 GLY GLY A . n A 1 171 ILE 171 483 483 ILE ILE A . n A 1 172 LEU 172 484 484 LEU LEU A . n A 1 173 LEU 173 485 485 LEU ALA A . n A 1 174 HIS 174 486 486 HIS HIS A . n A 1 175 LEU 175 487 487 LEU LEU A . n A 1 176 GLU 176 488 488 GLU GLU A . n A 1 177 TYR 177 489 489 TYR TYR A . n A 1 178 ALA 178 490 490 ALA ALA A . n A 1 179 ALA 179 491 491 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH TIP A . B 2 HOH 2 2 2 HOH TIP A . B 2 HOH 3 3 3 HOH TIP A . B 2 HOH 4 4 4 HOH TIP A . B 2 HOH 5 5 5 HOH TIP A . B 2 HOH 6 6 6 HOH TIP A . B 2 HOH 7 7 7 HOH TIP A . B 2 HOH 8 8 8 HOH TIP A . B 2 HOH 9 9 9 HOH TIP A . B 2 HOH 10 10 10 HOH TIP A . B 2 HOH 11 11 11 HOH TIP A . B 2 HOH 12 12 12 HOH TIP A . B 2 HOH 13 13 13 HOH TIP A . B 2 HOH 14 14 14 HOH TIP A . B 2 HOH 15 15 15 HOH TIP A . B 2 HOH 16 16 16 HOH TIP A . B 2 HOH 17 17 17 HOH TIP A . B 2 HOH 18 18 18 HOH TIP A . B 2 HOH 19 19 19 HOH TIP A . B 2 HOH 20 20 20 HOH TIP A . B 2 HOH 21 21 21 HOH TIP A . B 2 HOH 22 22 22 HOH TIP A . B 2 HOH 23 23 23 HOH TIP A . B 2 HOH 24 24 24 HOH TIP A . B 2 HOH 25 25 25 HOH TIP A . B 2 HOH 26 26 26 HOH TIP A . B 2 HOH 27 27 27 HOH TIP A . B 2 HOH 28 28 28 HOH TIP A . B 2 HOH 29 29 29 HOH TIP A . B 2 HOH 30 30 30 HOH TIP A . B 2 HOH 31 31 31 HOH TIP A . B 2 HOH 32 32 32 HOH TIP A . B 2 HOH 33 33 33 HOH TIP A . B 2 HOH 34 34 34 HOH TIP A . B 2 HOH 35 35 35 HOH TIP A . B 2 HOH 36 36 36 HOH TIP A . B 2 HOH 37 37 37 HOH TIP A . B 2 HOH 38 38 38 HOH TIP A . B 2 HOH 39 39 39 HOH TIP A . B 2 HOH 40 40 40 HOH TIP A . B 2 HOH 41 41 41 HOH TIP A . B 2 HOH 42 42 42 HOH TIP A . B 2 HOH 43 43 43 HOH TIP A . B 2 HOH 44 44 44 HOH TIP A . B 2 HOH 45 45 45 HOH TIP A . B 2 HOH 46 46 46 HOH TIP A . B 2 HOH 47 47 47 HOH TIP A . B 2 HOH 48 48 48 HOH TIP A . B 2 HOH 49 49 49 HOH TIP A . B 2 HOH 50 50 50 HOH TIP A . B 2 HOH 51 51 51 HOH TIP A . B 2 HOH 52 52 52 HOH TIP A . B 2 HOH 53 53 53 HOH TIP A . B 2 HOH 54 54 54 HOH TIP A . B 2 HOH 55 55 55 HOH TIP A . B 2 HOH 56 56 56 HOH TIP A . B 2 HOH 57 57 57 HOH TIP A . B 2 HOH 58 58 58 HOH TIP A . B 2 HOH 59 59 59 HOH TIP A . B 2 HOH 60 60 60 HOH TIP A . B 2 HOH 61 61 61 HOH TIP A . B 2 HOH 62 62 62 HOH TIP A . B 2 HOH 63 63 63 HOH TIP A . B 2 HOH 64 64 64 HOH TIP A . B 2 HOH 65 65 65 HOH TIP A . B 2 HOH 66 66 66 HOH TIP A . B 2 HOH 67 67 67 HOH TIP A . B 2 HOH 68 68 68 HOH TIP A . B 2 HOH 69 69 69 HOH TIP A . B 2 HOH 70 70 70 HOH TIP A . B 2 HOH 71 71 71 HOH TIP A . B 2 HOH 72 72 72 HOH TIP A . B 2 HOH 73 73 73 HOH TIP A . B 2 HOH 74 74 74 HOH TIP A . B 2 HOH 75 75 75 HOH TIP A . B 2 HOH 76 76 76 HOH TIP A . B 2 HOH 77 77 77 HOH TIP A . B 2 HOH 78 78 78 HOH TIP A . B 2 HOH 79 79 79 HOH TIP A . B 2 HOH 80 80 80 HOH TIP A . B 2 HOH 81 81 81 HOH TIP A . B 2 HOH 82 82 82 HOH TIP A . B 2 HOH 83 83 83 HOH TIP A . B 2 HOH 84 84 84 HOH TIP A . B 2 HOH 85 85 85 HOH TIP A . B 2 HOH 86 86 86 HOH TIP A . B 2 HOH 87 87 87 HOH TIP A . B 2 HOH 88 88 88 HOH TIP A . B 2 HOH 89 89 89 HOH TIP A . B 2 HOH 90 90 90 HOH TIP A . B 2 HOH 91 91 91 HOH TIP A . B 2 HOH 92 92 92 HOH TIP A . B 2 HOH 93 93 93 HOH TIP A . B 2 HOH 94 94 94 HOH TIP A . B 2 HOH 95 95 95 HOH TIP A . B 2 HOH 96 96 96 HOH TIP A . B 2 HOH 97 97 97 HOH TIP A . B 2 HOH 98 98 98 HOH TIP A . B 2 HOH 99 99 99 HOH TIP A . B 2 HOH 100 100 100 HOH TIP A . B 2 HOH 101 101 101 HOH TIP A . B 2 HOH 102 102 102 HOH TIP A . B 2 HOH 103 103 103 HOH TIP A . B 2 HOH 104 104 104 HOH TIP A . B 2 HOH 105 105 105 HOH TIP A . B 2 HOH 106 106 106 HOH TIP A . B 2 HOH 107 107 107 HOH TIP A . B 2 HOH 108 108 108 HOH TIP A . B 2 HOH 109 109 109 HOH TIP A . B 2 HOH 110 110 110 HOH TIP A . B 2 HOH 111 111 111 HOH TIP A . B 2 HOH 112 112 112 HOH TIP A . B 2 HOH 113 113 113 HOH TIP A . B 2 HOH 114 114 114 HOH TIP A . B 2 HOH 115 115 115 HOH TIP A . B 2 HOH 116 116 116 HOH TIP A . B 2 HOH 117 117 117 HOH TIP A . B 2 HOH 118 118 118 HOH TIP A . B 2 HOH 119 119 119 HOH TIP A . B 2 HOH 120 120 120 HOH TIP A . B 2 HOH 121 121 121 HOH TIP A . B 2 HOH 122 122 122 HOH TIP A . B 2 HOH 123 123 123 HOH TIP A . B 2 HOH 124 124 124 HOH TIP A . B 2 HOH 125 125 125 HOH TIP A . B 2 HOH 126 126 126 HOH TIP A . B 2 HOH 127 127 127 HOH TIP A . B 2 HOH 128 128 128 HOH TIP A . B 2 HOH 129 129 129 HOH TIP A . B 2 HOH 130 130 130 HOH TIP A . B 2 HOH 131 131 131 HOH TIP A . B 2 HOH 132 132 132 HOH TIP A . B 2 HOH 133 133 133 HOH TIP A . B 2 HOH 134 134 134 HOH TIP A . B 2 HOH 135 135 135 HOH TIP A . B 2 HOH 136 136 136 HOH TIP A . B 2 HOH 137 137 137 HOH TIP A . B 2 HOH 138 138 138 HOH TIP A . B 2 HOH 139 139 139 HOH TIP A . B 2 HOH 140 140 140 HOH TIP A . B 2 HOH 141 141 141 HOH TIP A . B 2 HOH 142 142 142 HOH TIP A . B 2 HOH 143 143 143 HOH TIP A . B 2 HOH 144 144 144 HOH TIP A . B 2 HOH 145 145 145 HOH TIP A . B 2 HOH 146 146 146 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _diffrn_reflns.diffrn_id _diffrn_reflns.pdbx_d_res_high _diffrn_reflns.pdbx_d_res_low _diffrn_reflns.pdbx_number_obs _diffrn_reflns.pdbx_Rmerge_I_obs _diffrn_reflns.pdbx_Rsym_value _diffrn_reflns.pdbx_chi_squared _diffrn_reflns.av_sigmaI_over_netI _diffrn_reflns.pdbx_redundancy _diffrn_reflns.pdbx_percent_possible_obs _diffrn_reflns.number _diffrn_reflns.pdbx_observed_criterion _diffrn_reflns.limit_h_max _diffrn_reflns.limit_h_min _diffrn_reflns.limit_k_max _diffrn_reflns.limit_k_min _diffrn_reflns.limit_l_max _diffrn_reflns.limit_l_min 1 3.000 46.010 10012 0.081 ? 0.97 34.78 3.83 98.70 39106 ? ? ? ? ? ? ? 2 2.530 45.960 16557 0.122 ? 0.96 34.78 3.26 98.40 54426 ? ? ? ? ? ? ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.46 46.01 ? 249 0.031 ? 0.930 3.75 97.00 1 5.13 6.46 ? 47 0.065 ? 0.950 3.89 99.50 1 4.48 5.13 ? 40 0.053 ? 0.920 3.87 99.40 1 4.07 4.48 ? 58 0.066 ? 0.960 3.85 99.00 1 3.78 4.07 ? 40 0.089 ? 0.960 3.84 99.00 1 3.56 3.78 ? 61 0.115 ? 0.980 3.82 99.00 1 3.38 3.56 ? 60 0.147 ? 0.960 3.83 98.90 1 3.23 3.38 ? 61 0.181 ? 0.990 3.84 98.50 1 3.11 3.23 ? 73 0.214 ? 1.000 3.78 98.50 1 3.00 3.11 ? 95 0.238 ? 1.090 3.81 98.30 2 5.45 45.96 ? 211 0.043 ? 0.850 3.85 98.60 2 4.33 5.45 ? 40 0.074 ? 0.840 3.87 99.90 2 3.78 4.33 ? 34 0.114 ? 0.910 3.84 99.90 2 3.43 3.78 ? 37 0.172 ? 0.930 3.83 99.90 2 3.19 3.43 ? 38 0.239 ? 1.040 3.80 99.90 2 3.00 3.19 ? 31 0.288 ? 1.050 3.80 100.00 2 2.85 3.00 ? 13 0.325 ? 1.110 3.60 100.00 2 2.73 2.85 ? 3 0.313 ? 1.030 2.46 99.90 2 2.62 2.73 ? 2 0.308 ? 1.020 1.83 96.70 2 2.53 2.62 ? ? 0.287 ? 0.840 1.48 89.00 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 AU 11.866 0.652 12.579 0.52 60.00 2 AU 10.862 0.231 15.697 0.41 55.80 3 AU 18.853 14.496 3.652 0.20 60.00 # _pdbx_phasing_dm.entry_id 3K10 _pdbx_phasing_dm.fom_acentric 0.770 _pdbx_phasing_dm.fom_centric 0.760 _pdbx_phasing_dm.fom 0.770 _pdbx_phasing_dm.reflns_acentric 3855 _pdbx_phasing_dm.reflns_centric 1315 _pdbx_phasing_dm.reflns 5170 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 8.900 40.325 ? ? 0.910 0.740 0.820 114 132 246 5.500 8.900 ? ? 0.860 0.770 0.830 479 262 741 4.400 5.500 ? ? 0.860 0.820 0.850 631 241 872 3.900 4.400 ? ? 0.820 0.810 0.810 676 205 881 3.300 3.900 ? ? 0.740 0.760 0.740 1212 305 1517 3.100 3.300 ? ? 0.610 0.630 0.610 743 170 913 # _phasing.method SIRAS # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 SOLVE 2.13 24-Feb-2008 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.13 6-Mar-2008 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 4 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 CYS _pdbx_validate_symm_contact.auth_seq_id_1 420 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 THR _pdbx_validate_symm_contact.auth_seq_id_2 422 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_772 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 315 ? ? 64.05 -131.26 2 1 GLN A 327 ? ? 81.92 -23.28 3 1 TYR A 421 ? ? 63.64 -63.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 329 ? CG ? A LYS 17 CG 2 1 Y 1 A LYS 329 ? CD ? A LYS 17 CD 3 1 Y 1 A LYS 329 ? CE ? A LYS 17 CE 4 1 Y 1 A LYS 329 ? NZ ? A LYS 17 NZ 5 1 Y 1 A LYS 338 ? CG ? A LYS 26 CG 6 1 Y 1 A LYS 338 ? CD ? A LYS 26 CD 7 1 Y 1 A LYS 338 ? CE ? A LYS 26 CE 8 1 Y 1 A LYS 338 ? NZ ? A LYS 26 NZ 9 1 Y 1 A LYS 340 ? CG ? A LYS 28 CG 10 1 Y 1 A LYS 340 ? CD ? A LYS 28 CD 11 1 Y 1 A LYS 340 ? CE ? A LYS 28 CE 12 1 Y 1 A LYS 340 ? NZ ? A LYS 28 NZ 13 1 Y 1 A ARG 343 ? CG ? A ARG 31 CG 14 1 Y 1 A ARG 343 ? CD ? A ARG 31 CD 15 1 Y 1 A ARG 343 ? NE ? A ARG 31 NE 16 1 Y 1 A ARG 343 ? CZ ? A ARG 31 CZ 17 1 Y 1 A ARG 343 ? NH1 ? A ARG 31 NH1 18 1 Y 1 A ARG 343 ? NH2 ? A ARG 31 NH2 19 1 Y 1 A ASP 471 ? CG ? A ASP 159 CG 20 1 Y 1 A ASP 471 ? OD1 ? A ASP 159 OD1 21 1 Y 1 A ASP 471 ? OD2 ? A ASP 159 OD2 22 1 Y 1 A SER 481 ? OG ? A SER 169 OG 23 1 Y 1 A LEU 485 ? CG ? A LEU 173 CG 24 1 Y 1 A LEU 485 ? CD1 ? A LEU 173 CD1 25 1 Y 1 A LEU 485 ? CD2 ? A LEU 173 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 472 ? A PRO 160 2 1 Y 1 A LYS 473 ? A LYS 161 3 1 Y 1 A ASN 474 ? A ASN 162 4 1 Y 1 A GLY 475 ? A GLY 163 5 1 Y 1 A MET 476 ? A MET 164 6 1 Y 1 A GLU 477 ? A GLU 165 7 1 Y 1 A ASP 478 ? A ASP 166 8 1 Y 1 A GLN 479 ? A GLN 167 9 1 Y 1 A ASN 480 ? A ASN 168 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #