data_3K20 # _entry.id 3K20 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3K20 RCSB RCSB055445 WWPDB D_1000055445 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2VZJ '36% of amino acid residues are identical.' unspecified TargetDB CdR100D . unspecified # _pdbx_database_status.entry_id 3K20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.' 1 'Lew, S.' 2 'Sahdev, S.' 3 'Xiao, R.' 4 'Ciccosanti, C.' 5 'Wang, H.' 6 'Everett, J.K.' 7 'Nair, R.' 8 'Acton, T.B.' 9 'Rost, B.' 10 'Montelione, G.T.' 11 'Tong, L.' 12 'Hunt, J.F.' 13 'Northeast Structural Genomics Consortium (NESG)' 14 # _citation.id primary _citation.title 'Northeast Structural Genomics Consortium Target CdR100D' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuzin, A.' 1 ? primary 'Lew, S.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Sahdev, S.' 4 ? primary 'Xiao, R.' 5 ? primary 'Ciccosanti, C.' 6 ? primary 'Wang, H.' 7 ? primary 'Everett, J.K.' 8 ? primary 'Nair, R.' 9 ? primary 'Acton, T.B.' 10 ? primary 'Rost, B.' 11 ? primary 'Montelione, G.T.' 12 ? primary 'Tong, L.' 13 ? primary 'Hunt, J.F.' 14 ? # _cell.entry_id 3K20 _cell.length_a 99.839 _cell.length_b 99.839 _cell.length_c 137.309 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K20 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man oxidoreductase 20457.164 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSH(MSE)RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDL(MSE)TA (MSE)TTRVHTTKLEEITSALSASDGLVVATPVFKASYTGLFK(MSE)FFDILDTDALTG(MSE)PTIIAATAGSARHSL VLDYALRPLLSY(MSE)RAVVVPTGVFAATEDFGGPEGAEFNKRIARAAGELASLIVEESG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEIT SALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATAGSARHSLVLDYALRPLLSYMRAVVVPTGVFAAT EDFGGPEGAEFNKRIARAAGELASLIVEESG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CdR100D # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MSE n 1 12 ARG n 1 13 THR n 1 14 LEU n 1 15 ALA n 1 16 VAL n 1 17 ILE n 1 18 SER n 1 19 ALA n 1 20 GLY n 1 21 LEU n 1 22 SER n 1 23 THR n 1 24 PRO n 1 25 SER n 1 26 SER n 1 27 THR n 1 28 ARG n 1 29 GLN n 1 30 ILE n 1 31 ALA n 1 32 ASP n 1 33 SER n 1 34 ILE n 1 35 SER n 1 36 GLU n 1 37 ALA n 1 38 VAL n 1 39 THR n 1 40 ALA n 1 41 ALA n 1 42 VAL n 1 43 SER n 1 44 ALA n 1 45 ARG n 1 46 GLY n 1 47 GLU n 1 48 ALA n 1 49 LEU n 1 50 SER n 1 51 VAL n 1 52 SER n 1 53 THR n 1 54 ILE n 1 55 GLU n 1 56 LEU n 1 57 SER n 1 58 GLU n 1 59 LEU n 1 60 ILE n 1 61 PRO n 1 62 ASP n 1 63 LEU n 1 64 MSE n 1 65 THR n 1 66 ALA n 1 67 MSE n 1 68 THR n 1 69 THR n 1 70 ARG n 1 71 VAL n 1 72 HIS n 1 73 THR n 1 74 THR n 1 75 LYS n 1 76 LEU n 1 77 GLU n 1 78 GLU n 1 79 ILE n 1 80 THR n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 SER n 1 85 ALA n 1 86 SER n 1 87 ASP n 1 88 GLY n 1 89 LEU n 1 90 VAL n 1 91 VAL n 1 92 ALA n 1 93 THR n 1 94 PRO n 1 95 VAL n 1 96 PHE n 1 97 LYS n 1 98 ALA n 1 99 SER n 1 100 TYR n 1 101 THR n 1 102 GLY n 1 103 LEU n 1 104 PHE n 1 105 LYS n 1 106 MSE n 1 107 PHE n 1 108 PHE n 1 109 ASP n 1 110 ILE n 1 111 LEU n 1 112 ASP n 1 113 THR n 1 114 ASP n 1 115 ALA n 1 116 LEU n 1 117 THR n 1 118 GLY n 1 119 MSE n 1 120 PRO n 1 121 THR n 1 122 ILE n 1 123 ILE n 1 124 ALA n 1 125 ALA n 1 126 THR n 1 127 ALA n 1 128 GLY n 1 129 SER n 1 130 ALA n 1 131 ARG n 1 132 HIS n 1 133 SER n 1 134 LEU n 1 135 VAL n 1 136 LEU n 1 137 ASP n 1 138 TYR n 1 139 ALA n 1 140 LEU n 1 141 ARG n 1 142 PRO n 1 143 LEU n 1 144 LEU n 1 145 SER n 1 146 TYR n 1 147 MSE n 1 148 ARG n 1 149 ALA n 1 150 VAL n 1 151 VAL n 1 152 VAL n 1 153 PRO n 1 154 THR n 1 155 GLY n 1 156 VAL n 1 157 PHE n 1 158 ALA n 1 159 ALA n 1 160 THR n 1 161 GLU n 1 162 ASP n 1 163 PHE n 1 164 GLY n 1 165 GLY n 1 166 PRO n 1 167 GLU n 1 168 GLY n 1 169 ALA n 1 170 GLU n 1 171 PHE n 1 172 ASN n 1 173 LYS n 1 174 ARG n 1 175 ILE n 1 176 ALA n 1 177 ARG n 1 178 ALA n 1 179 ALA n 1 180 GLY n 1 181 GLU n 1 182 LEU n 1 183 ALA n 1 184 SER n 1 185 LEU n 1 186 ILE n 1 187 VAL n 1 188 GLU n 1 189 GLU n 1 190 SER n 1 191 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DIP1437 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Corynebacterium diphtheriae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1717 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 14-15C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6NGS1_CORDI _struct_ref.pdbx_db_accession Q6NGS1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLV VATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATAGSARHSLVLDYALRPLLSYMRAVVVPTGVFAATEDFGGPEGAE FNKRIARAAGELASLIVEESG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3K20 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6NGS1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3K20 MSE A 1 ? UNP Q6NGS1 ? ? 'expression tag' -9 1 1 3K20 GLY A 2 ? UNP Q6NGS1 ? ? 'expression tag' -8 2 1 3K20 HIS A 3 ? UNP Q6NGS1 ? ? 'expression tag' -7 3 1 3K20 HIS A 4 ? UNP Q6NGS1 ? ? 'expression tag' -6 4 1 3K20 HIS A 5 ? UNP Q6NGS1 ? ? 'expression tag' -5 5 1 3K20 HIS A 6 ? UNP Q6NGS1 ? ? 'expression tag' -4 6 1 3K20 HIS A 7 ? UNP Q6NGS1 ? ? 'expression tag' -3 7 1 3K20 HIS A 8 ? UNP Q6NGS1 ? ? 'expression tag' -2 8 1 3K20 SER A 9 ? UNP Q6NGS1 ? ? 'expression tag' -1 9 1 3K20 HIS A 10 ? UNP Q6NGS1 ? ? 'expression tag' 0 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3K20 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.83 _exptl_crystal.density_percent_sol 74.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution:2.2M ammonium sulfate, 0.1M sodium acetate, 3% ethanol, VAPOR DIFFUSION, HANGING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2009-08-04 _diffrn_detector.details 'Si(111). A SECOND SET OF Si(220) crystals is also available.' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97879 1.0 2 0.91837 1.0 3 0.97926 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength '0.97879 0.91837 0.97926' _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3K20 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 26206 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.06600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.31100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.900 _reflns_shell.pdbx_redundancy 3.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3K20 _refine.ls_number_reflns_obs 15251 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.51 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.230 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.030 _refine.ls_number_reflns_R_free 730 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.06 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.pdbx_overall_phase_error 25.13 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1328 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1381 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 29.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1363 'X-RAY DIFFRACTION' ? f_angle_d 1.275 ? ? 1857 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.021 ? ? 475 'X-RAY DIFFRACTION' ? f_chiral_restr 0.083 ? ? 233 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 231 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4985 2.6913 2662 0.3196 99.00 0.2885 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.6913 2.9619 2683 0.2804 100.00 0.2905 . . 151 . . . . 'X-RAY DIFFRACTION' . 2.9619 3.3899 2719 0.2679 100.00 0.3300 . . 166 . . . . 'X-RAY DIFFRACTION' . 3.3899 4.2689 2783 0.2028 100.00 0.2264 . . 133 . . . . 'X-RAY DIFFRACTION' . 4.2689 29.5096 2944 0.1862 99.00 0.1794 . . 140 . . . . # _struct.entry_id 3K20 _struct.title ;X-ray structure of oxidoreductase from corynebacterium diphtheriae,hexagonal crystal form. northeast structural genomics consortium target cdr100d ; _struct.pdbx_descriptor oxidoreductase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3K20 _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CdR100D, Q6NGSI_CORDI, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? ARG A 45 ? SER A 15 ARG A 35 1 ? 21 HELX_P HELX_P2 2 LEU A 59 ? THR A 68 ? LEU A 49 THR A 58 1 ? 10 HELX_P HELX_P3 3 THR A 73 ? SER A 86 ? THR A 63 SER A 76 1 ? 14 HELX_P HELX_P4 4 THR A 101 ? ILE A 110 ? THR A 91 ILE A 100 1 ? 10 HELX_P HELX_P5 5 LEU A 134 ? ALA A 139 ? LEU A 124 ALA A 129 1 ? 6 HELX_P HELX_P6 6 ALA A 139 ? MSE A 147 ? ALA A 129 MSE A 137 1 ? 9 HELX_P HELX_P7 7 GLU A 161 ? PHE A 163 ? GLU A 151 PHE A 153 5 ? 3 HELX_P HELX_P8 8 GLY A 164 ? VAL A 187 ? GLY A 154 VAL A 177 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A HIS 10 C ? ? ? 1_555 A MSE 11 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? A MSE 11 C ? ? ? 1_555 A ARG 12 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale both ? A LEU 63 C ? ? ? 1_555 A MSE 64 N ? ? A LEU 53 A MSE 54 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A MSE 64 C ? ? ? 1_555 A THR 65 N ? ? A MSE 54 A THR 55 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale both ? A ALA 66 C ? ? ? 1_555 A MSE 67 N ? ? A ALA 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale both ? A MSE 67 C ? ? ? 1_555 A THR 68 N ? ? A MSE 57 A THR 58 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale both ? A LYS 105 C ? ? ? 1_555 A MSE 106 N ? ? A LYS 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale both ? A MSE 106 C ? ? ? 1_555 A PHE 107 N ? ? A MSE 96 A PHE 97 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale both ? A GLY 118 C ? ? ? 1_555 A MSE 119 N ? ? A GLY 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale both ? A MSE 119 C ? ? ? 1_555 A PRO 120 N ? ? A MSE 109 A PRO 110 1_555 ? ? ? ? ? ? ? 1.344 ? covale11 covale both ? A TYR 146 C ? ? ? 1_555 A MSE 147 N ? ? A TYR 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale both ? A MSE 147 C ? ? ? 1_555 A ARG 148 N ? ? A MSE 137 A ARG 138 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 13 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 14 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 49 ? GLU A 55 ? LEU A 39 GLU A 45 A 2 ARG A 12 ? SER A 18 ? ARG A 2 SER A 8 A 3 GLY A 88 ? PRO A 94 ? GLY A 78 PRO A 84 A 4 PRO A 120 ? ALA A 127 ? PRO A 110 ALA A 117 A 5 VAL A 150 ? VAL A 151 ? VAL A 140 VAL A 141 B 1 LEU A 49 ? GLU A 55 ? LEU A 39 GLU A 45 B 2 ARG A 12 ? SER A 18 ? ARG A 2 SER A 8 B 3 GLY A 88 ? PRO A 94 ? GLY A 78 PRO A 84 B 4 PRO A 120 ? ALA A 127 ? PRO A 110 ALA A 117 B 5 VAL A 156 ? ALA A 159 ? VAL A 146 ALA A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 54 ? O ILE A 44 N VAL A 16 ? N VAL A 6 A 2 3 N ILE A 17 ? N ILE A 7 O VAL A 90 ? O VAL A 80 A 3 4 N VAL A 91 ? N VAL A 81 O ALA A 124 ? O ALA A 114 A 4 5 N THR A 121 ? N THR A 111 O VAL A 150 ? O VAL A 140 B 1 2 O ILE A 54 ? O ILE A 44 N VAL A 16 ? N VAL A 6 B 2 3 N ILE A 17 ? N ILE A 7 O VAL A 90 ? O VAL A 80 B 3 4 N VAL A 91 ? N VAL A 81 O ALA A 124 ? O ALA A 114 B 4 5 N ILE A 123 ? N ILE A 113 O VAL A 156 ? O VAL A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 182' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 183' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 184' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 185' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 20 ? GLY A 10 . ? 1_555 ? 2 AC1 7 LEU A 21 ? LEU A 11 . ? 1_555 ? 3 AC1 7 SER A 22 ? SER A 12 . ? 1_555 ? 4 AC1 7 SER A 25 ? SER A 15 . ? 1_555 ? 5 AC1 7 SER A 26 ? SER A 16 . ? 1_555 ? 6 AC1 7 THR A 27 ? THR A 17 . ? 1_555 ? 7 AC1 7 PRO A 94 ? PRO A 84 . ? 1_555 ? 8 AC2 3 GLY A 128 ? GLY A 118 . ? 1_555 ? 9 AC2 3 SER A 129 ? SER A 119 . ? 1_555 ? 10 AC2 3 ARG A 131 ? ARG A 121 . ? 1_555 ? 11 AC3 4 LYS A 97 ? LYS A 87 . ? 4_665 ? 12 AC3 4 THR A 113 ? THR A 103 . ? 1_555 ? 13 AC3 4 TYR A 146 ? TYR A 136 . ? 1_555 ? 14 AC3 4 HOH F . ? HOH A 213 . ? 4_665 ? 15 AC4 2 ARG A 148 ? ARG A 138 . ? 10_665 ? 16 AC4 2 ARG A 177 ? ARG A 167 . ? 1_555 ? # _atom_sites.entry_id 3K20 _atom_sites.fract_transf_matrix[1][1] 0.010016 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007283 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -9 ? ? ? A . n A 1 2 GLY 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 ? ? ? A . n A 1 7 HIS 7 -3 ? ? ? A . n A 1 8 HIS 8 -2 ? ? ? A . n A 1 9 SER 9 -1 ? ? ? A . n A 1 10 HIS 10 0 0 HIS HIS A . n A 1 11 MSE 11 1 1 MSE MSE A . n A 1 12 ARG 12 2 2 ARG ARG A . n A 1 13 THR 13 3 3 THR THR A . n A 1 14 LEU 14 4 4 LEU LEU A . n A 1 15 ALA 15 5 5 ALA ALA A . n A 1 16 VAL 16 6 6 VAL VAL A . n A 1 17 ILE 17 7 7 ILE ILE A . n A 1 18 SER 18 8 8 SER SER A . n A 1 19 ALA 19 9 9 ALA ALA A . n A 1 20 GLY 20 10 10 GLY GLY A . n A 1 21 LEU 21 11 11 LEU LEU A . n A 1 22 SER 22 12 12 SER SER A . n A 1 23 THR 23 13 13 THR THR A . n A 1 24 PRO 24 14 14 PRO PRO A . n A 1 25 SER 25 15 15 SER SER A . n A 1 26 SER 26 16 16 SER SER A . n A 1 27 THR 27 17 17 THR THR A . n A 1 28 ARG 28 18 18 ARG ARG A . n A 1 29 GLN 29 19 19 GLN GLN A . n A 1 30 ILE 30 20 20 ILE ILE A . n A 1 31 ALA 31 21 21 ALA ALA A . n A 1 32 ASP 32 22 22 ASP ASP A . n A 1 33 SER 33 23 23 SER SER A . n A 1 34 ILE 34 24 24 ILE ILE A . n A 1 35 SER 35 25 25 SER SER A . n A 1 36 GLU 36 26 26 GLU GLU A . n A 1 37 ALA 37 27 27 ALA ALA A . n A 1 38 VAL 38 28 28 VAL VAL A . n A 1 39 THR 39 29 29 THR THR A . n A 1 40 ALA 40 30 30 ALA ALA A . n A 1 41 ALA 41 31 31 ALA ALA A . n A 1 42 VAL 42 32 32 VAL VAL A . n A 1 43 SER 43 33 33 SER SER A . n A 1 44 ALA 44 34 34 ALA ALA A . n A 1 45 ARG 45 35 35 ARG ARG A . n A 1 46 GLY 46 36 36 GLY GLY A . n A 1 47 GLU 47 37 37 GLU GLU A . n A 1 48 ALA 48 38 38 ALA ALA A . n A 1 49 LEU 49 39 39 LEU LEU A . n A 1 50 SER 50 40 40 SER SER A . n A 1 51 VAL 51 41 41 VAL VAL A . n A 1 52 SER 52 42 42 SER SER A . n A 1 53 THR 53 43 43 THR THR A . n A 1 54 ILE 54 44 44 ILE ILE A . n A 1 55 GLU 55 45 45 GLU GLU A . n A 1 56 LEU 56 46 46 LEU LEU A . n A 1 57 SER 57 47 47 SER SER A . n A 1 58 GLU 58 48 48 GLU GLU A . n A 1 59 LEU 59 49 49 LEU LEU A . n A 1 60 ILE 60 50 50 ILE ILE A . n A 1 61 PRO 61 51 51 PRO PRO A . n A 1 62 ASP 62 52 52 ASP ASP A . n A 1 63 LEU 63 53 53 LEU LEU A . n A 1 64 MSE 64 54 54 MSE MSE A . n A 1 65 THR 65 55 55 THR THR A . n A 1 66 ALA 66 56 56 ALA ALA A . n A 1 67 MSE 67 57 57 MSE MSE A . n A 1 68 THR 68 58 58 THR THR A . n A 1 69 THR 69 59 59 THR THR A . n A 1 70 ARG 70 60 60 ARG ARG A . n A 1 71 VAL 71 61 61 VAL VAL A . n A 1 72 HIS 72 62 62 HIS HIS A . n A 1 73 THR 73 63 63 THR THR A . n A 1 74 THR 74 64 64 THR THR A . n A 1 75 LYS 75 65 65 LYS LYS A . n A 1 76 LEU 76 66 66 LEU LEU A . n A 1 77 GLU 77 67 67 GLU GLU A . n A 1 78 GLU 78 68 68 GLU GLU A . n A 1 79 ILE 79 69 69 ILE ILE A . n A 1 80 THR 80 70 70 THR THR A . n A 1 81 SER 81 71 71 SER SER A . n A 1 82 ALA 82 72 72 ALA ALA A . n A 1 83 LEU 83 73 73 LEU LEU A . n A 1 84 SER 84 74 74 SER SER A . n A 1 85 ALA 85 75 75 ALA ALA A . n A 1 86 SER 86 76 76 SER SER A . n A 1 87 ASP 87 77 77 ASP ASP A . n A 1 88 GLY 88 78 78 GLY GLY A . n A 1 89 LEU 89 79 79 LEU LEU A . n A 1 90 VAL 90 80 80 VAL VAL A . n A 1 91 VAL 91 81 81 VAL VAL A . n A 1 92 ALA 92 82 82 ALA ALA A . n A 1 93 THR 93 83 83 THR THR A . n A 1 94 PRO 94 84 84 PRO PRO A . n A 1 95 VAL 95 85 85 VAL VAL A . n A 1 96 PHE 96 86 86 PHE PHE A . n A 1 97 LYS 97 87 87 LYS LYS A . n A 1 98 ALA 98 88 88 ALA ALA A . n A 1 99 SER 99 89 89 SER SER A . n A 1 100 TYR 100 90 90 TYR TYR A . n A 1 101 THR 101 91 91 THR THR A . n A 1 102 GLY 102 92 92 GLY GLY A . n A 1 103 LEU 103 93 93 LEU LEU A . n A 1 104 PHE 104 94 94 PHE PHE A . n A 1 105 LYS 105 95 95 LYS LYS A . n A 1 106 MSE 106 96 96 MSE MSE A . n A 1 107 PHE 107 97 97 PHE PHE A . n A 1 108 PHE 108 98 98 PHE PHE A . n A 1 109 ASP 109 99 99 ASP ASP A . n A 1 110 ILE 110 100 100 ILE ILE A . n A 1 111 LEU 111 101 101 LEU LEU A . n A 1 112 ASP 112 102 102 ASP ASP A . n A 1 113 THR 113 103 103 THR THR A . n A 1 114 ASP 114 104 104 ASP ASP A . n A 1 115 ALA 115 105 105 ALA ALA A . n A 1 116 LEU 116 106 106 LEU LEU A . n A 1 117 THR 117 107 107 THR THR A . n A 1 118 GLY 118 108 108 GLY GLY A . n A 1 119 MSE 119 109 109 MSE MSE A . n A 1 120 PRO 120 110 110 PRO PRO A . n A 1 121 THR 121 111 111 THR THR A . n A 1 122 ILE 122 112 112 ILE ILE A . n A 1 123 ILE 123 113 113 ILE ILE A . n A 1 124 ALA 124 114 114 ALA ALA A . n A 1 125 ALA 125 115 115 ALA ALA A . n A 1 126 THR 126 116 116 THR THR A . n A 1 127 ALA 127 117 117 ALA ALA A . n A 1 128 GLY 128 118 118 GLY GLY A . n A 1 129 SER 129 119 119 SER SER A . n A 1 130 ALA 130 120 120 ALA ALA A . n A 1 131 ARG 131 121 121 ARG ARG A . n A 1 132 HIS 132 122 122 HIS HIS A . n A 1 133 SER 133 123 123 SER SER A . n A 1 134 LEU 134 124 124 LEU LEU A . n A 1 135 VAL 135 125 125 VAL VAL A . n A 1 136 LEU 136 126 126 LEU LEU A . n A 1 137 ASP 137 127 127 ASP ASP A . n A 1 138 TYR 138 128 128 TYR TYR A . n A 1 139 ALA 139 129 129 ALA ALA A . n A 1 140 LEU 140 130 130 LEU LEU A . n A 1 141 ARG 141 131 131 ARG ARG A . n A 1 142 PRO 142 132 132 PRO PRO A . n A 1 143 LEU 143 133 133 LEU LEU A . n A 1 144 LEU 144 134 134 LEU LEU A . n A 1 145 SER 145 135 135 SER SER A . n A 1 146 TYR 146 136 136 TYR TYR A . n A 1 147 MSE 147 137 137 MSE MSE A . n A 1 148 ARG 148 138 138 ARG ARG A . n A 1 149 ALA 149 139 139 ALA ALA A . n A 1 150 VAL 150 140 140 VAL VAL A . n A 1 151 VAL 151 141 141 VAL VAL A . n A 1 152 VAL 152 142 142 VAL VAL A . n A 1 153 PRO 153 143 143 PRO PRO A . n A 1 154 THR 154 144 144 THR THR A . n A 1 155 GLY 155 145 145 GLY GLY A . n A 1 156 VAL 156 146 146 VAL VAL A . n A 1 157 PHE 157 147 147 PHE PHE A . n A 1 158 ALA 158 148 148 ALA ALA A . n A 1 159 ALA 159 149 149 ALA ALA A . n A 1 160 THR 160 150 150 THR THR A . n A 1 161 GLU 161 151 151 GLU GLU A . n A 1 162 ASP 162 152 152 ASP ASP A . n A 1 163 PHE 163 153 153 PHE PHE A . n A 1 164 GLY 164 154 154 GLY GLY A . n A 1 165 GLY 165 155 155 GLY GLY A . n A 1 166 PRO 166 156 156 PRO PRO A . n A 1 167 GLU 167 157 157 GLU GLU A . n A 1 168 GLY 168 158 158 GLY GLY A . n A 1 169 ALA 169 159 159 ALA ALA A . n A 1 170 GLU 170 160 160 GLU GLU A . n A 1 171 PHE 171 161 161 PHE PHE A . n A 1 172 ASN 172 162 162 ASN ASN A . n A 1 173 LYS 173 163 163 LYS LYS A . n A 1 174 ARG 174 164 164 ARG ARG A . n A 1 175 ILE 175 165 165 ILE ILE A . n A 1 176 ALA 176 166 166 ALA ALA A . n A 1 177 ARG 177 167 167 ARG ARG A . n A 1 178 ALA 178 168 168 ALA ALA A . n A 1 179 ALA 179 169 169 ALA ALA A . n A 1 180 GLY 180 170 170 GLY GLY A . n A 1 181 GLU 181 171 171 GLU GLU A . n A 1 182 LEU 182 172 172 LEU LEU A . n A 1 183 ALA 183 173 173 ALA ALA A . n A 1 184 SER 184 174 174 SER SER A . n A 1 185 LEU 185 175 175 LEU LEU A . n A 1 186 ILE 186 176 176 ILE ILE A . n A 1 187 VAL 187 177 177 VAL VAL A . n A 1 188 GLU 188 178 178 GLU GLU A . n A 1 189 GLU 189 179 179 GLU GLU A . n A 1 190 SER 190 180 180 SER SER A . n A 1 191 GLY 191 181 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 182 182 SO4 SO4 A . C 2 SO4 1 183 183 SO4 SO4 A . D 2 SO4 1 184 184 SO4 SO4 A . E 2 SO4 1 185 185 SO4 SO4 A . F 3 HOH 1 186 186 HOH HOH A . F 3 HOH 2 187 187 HOH HOH A . F 3 HOH 3 188 188 HOH HOH A . F 3 HOH 4 189 189 HOH HOH A . F 3 HOH 5 190 190 HOH HOH A . F 3 HOH 6 191 191 HOH HOH A . F 3 HOH 7 192 192 HOH HOH A . F 3 HOH 8 193 193 HOH HOH A . F 3 HOH 9 194 194 HOH HOH A . F 3 HOH 10 195 195 HOH HOH A . F 3 HOH 11 196 196 HOH HOH A . F 3 HOH 12 197 197 HOH HOH A . F 3 HOH 13 198 198 HOH HOH A . F 3 HOH 14 199 199 HOH HOH A . F 3 HOH 15 200 200 HOH HOH A . F 3 HOH 16 201 201 HOH HOH A . F 3 HOH 17 202 202 HOH HOH A . F 3 HOH 18 203 203 HOH HOH A . F 3 HOH 19 205 205 HOH HOH A . F 3 HOH 20 206 206 HOH HOH A . F 3 HOH 21 207 207 HOH HOH A . F 3 HOH 22 208 208 HOH HOH A . F 3 HOH 23 209 209 HOH HOH A . F 3 HOH 24 210 210 HOH HOH A . F 3 HOH 25 211 211 HOH HOH A . F 3 HOH 26 212 212 HOH HOH A . F 3 HOH 27 213 213 HOH HOH A . F 3 HOH 28 214 214 HOH HOH A . F 3 HOH 29 215 215 HOH HOH A . F 3 HOH 30 216 216 HOH HOH A . F 3 HOH 31 217 217 HOH HOH A . F 3 HOH 32 218 218 HOH HOH A . F 3 HOH 33 220 220 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 64 A MSE 54 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 57 ? MET SELENOMETHIONINE 4 A MSE 106 A MSE 96 ? MET SELENOMETHIONINE 5 A MSE 119 A MSE 109 ? MET SELENOMETHIONINE 6 A MSE 147 A MSE 137 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11350 ? 1 MORE -300 ? 1 'SSA (A^2)' 27460 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 49.9195000000 0.0000000000 -1.0000000000 0.0000000000 86.4631102884 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.7696666667 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5000000000 -0.8660254038 0.0000000000 49.9195000000 -0.8660254038 -0.5000000000 0.0000000000 86.4631102884 0.0000000000 0.0000000000 -1.0000000000 45.7696666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 218 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.contact_author' 2 3 'Structure model' '_software.contact_author_email' 3 3 'Structure model' '_software.language' 4 3 'Structure model' '_software.location' 5 3 'Structure model' '_software.name' 6 3 'Structure model' '_software.type' 7 3 'Structure model' '_software.version' 8 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 33.3447 _pdbx_refine_tls.origin_y 31.5544 _pdbx_refine_tls.origin_z 35.8693 _pdbx_refine_tls.T[1][1] 0.3291 _pdbx_refine_tls.T[2][2] 0.1768 _pdbx_refine_tls.T[3][3] 0.2351 _pdbx_refine_tls.T[1][2] 0.0116 _pdbx_refine_tls.T[1][3] 0.0262 _pdbx_refine_tls.T[2][3] -0.0045 _pdbx_refine_tls.L[1][1] 0.6836 _pdbx_refine_tls.L[2][2] 0.8396 _pdbx_refine_tls.L[3][3] 0.7438 _pdbx_refine_tls.L[1][2] -0.6892 _pdbx_refine_tls.L[1][3] 0.3472 _pdbx_refine_tls.L[2][3] -0.0608 _pdbx_refine_tls.S[1][1] -0.1441 _pdbx_refine_tls.S[1][2] 0.0721 _pdbx_refine_tls.S[1][3] 0.0234 _pdbx_refine_tls.S[2][1] 0.1873 _pdbx_refine_tls.S[2][2] 0.0257 _pdbx_refine_tls.S[2][3] 0.0844 _pdbx_refine_tls.S[3][1] 0.1453 _pdbx_refine_tls.S[3][2] 0.0408 _pdbx_refine_tls.S[3][3] -0.0000 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHENIX 1.4_115 ? ? ? ? refinement ? ? ? 1 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 DENZO . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 PHENIX . ? ? ? ? phasing ? ? ? 5 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 1 ? ? 63.72 108.09 2 1 THR A 59 ? ? -164.90 115.27 3 1 SER A 89 ? ? -170.53 -171.78 4 1 ALA A 129 ? ? -135.58 -64.24 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -9 ? A MSE 1 2 1 Y 1 A GLY -8 ? A GLY 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 A HIS -5 ? A HIS 5 6 1 Y 1 A HIS -4 ? A HIS 6 7 1 Y 1 A HIS -3 ? A HIS 7 8 1 Y 1 A HIS -2 ? A HIS 8 9 1 Y 1 A SER -1 ? A SER 9 10 1 Y 1 A GLY 181 ? A GLY 191 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #