data_3K2A # _entry.id 3K2A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3K2A RCSB RCSB055455 WWPDB D_1000055455 # _pdbx_database_status.entry_id 3K2A _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-29 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lam, R.' 1 'Soloveychik, M.' 2 'Battaile, K.P.' 3 'Romanov, V.' 4 'Lam, K.' 5 'Beletskaya, I.' 6 'Gordon, E.' 7 'Pai, E.F.' 8 'Chirgadze, N.Y.' 9 # _citation.id primary _citation.title 'Crystal structure of the homeobox domain of human homeobox protein Meis2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lam, R.' 1 primary 'Soloveychik, M.' 2 primary 'Battaile, K.P.' 3 primary 'Romanov, V.' 4 primary 'Lam, K.' 5 primary 'Beletskaya, I.' 6 primary 'Gordon, E.' 7 primary 'Pai, E.F.' 8 primary 'Chirgadze, N.Y.' 9 # _cell.length_a 113.597 _cell.length_b 113.597 _cell.length_c 50.251 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3K2A _cell.pdbx_unique_axis ? _cell.Z_PDB 32 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.entry_id 3K2A _symmetry.Int_Tables_number 97 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein Meis2' 7879.710 2 ? ? 'Residues 281-345 (homeobox domain)' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 4 water nat water 18.015 48 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Meis1-related protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GSGIFPKVATNI(MSE)RAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP(MSE)IDQSNRA' _entity_poly.pdbx_seq_one_letter_code_can GSGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 ILE n 1 5 PHE n 1 6 PRO n 1 7 LYS n 1 8 VAL n 1 9 ALA n 1 10 THR n 1 11 ASN n 1 12 ILE n 1 13 MSE n 1 14 ARG n 1 15 ALA n 1 16 TRP n 1 17 LEU n 1 18 PHE n 1 19 GLN n 1 20 HIS n 1 21 LEU n 1 22 THR n 1 23 HIS n 1 24 PRO n 1 25 TYR n 1 26 PRO n 1 27 SER n 1 28 GLU n 1 29 GLU n 1 30 GLN n 1 31 LYS n 1 32 LYS n 1 33 GLN n 1 34 LEU n 1 35 ALA n 1 36 GLN n 1 37 ASP n 1 38 THR n 1 39 GLY n 1 40 LEU n 1 41 THR n 1 42 ILE n 1 43 LEU n 1 44 GLN n 1 45 VAL n 1 46 ASN n 1 47 ASN n 1 48 TRP n 1 49 PHE n 1 50 ILE n 1 51 ASN n 1 52 ALA n 1 53 ARG n 1 54 ARG n 1 55 ARG n 1 56 ILE n 1 57 VAL n 1 58 GLN n 1 59 PRO n 1 60 MSE n 1 61 ILE n 1 62 ASP n 1 63 GLN n 1 64 SER n 1 65 ASN n 1 66 ARG n 1 67 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MEIS2, MRG1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MEIS2_HUMAN _struct_ref.pdbx_db_accession O14770 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA _struct_ref.pdbx_align_begin 281 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3K2A A 3 ? 67 ? O14770 281 ? 345 ? 281 345 2 1 3K2A B 3 ? 67 ? O14770 281 ? 345 ? 281 345 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3K2A GLY A 1 ? UNP O14770 ? ? 'EXPRESSION TAG' 279 1 1 3K2A SER A 2 ? UNP O14770 ? ? 'EXPRESSION TAG' 280 2 2 3K2A GLY B 1 ? UNP O14770 ? ? 'EXPRESSION TAG' 279 3 2 3K2A SER B 2 ? UNP O14770 ? ? 'EXPRESSION TAG' 280 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3K2A _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.pdbx_details '28% PEG4000, 8% isopropanol, 0.1M sodium acetate, 10mM L-proline, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-08-05 _diffrn_detector.details 'Si(111) double-crystal monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97910 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-BM' _diffrn_source.pdbx_wavelength_list 0.97910 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-BM # _reflns.entry_id 3K2A _reflns.d_resolution_high 1.950 _reflns.d_resolution_low 50.000 _reflns.number_obs 12319 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 17.600 _reflns.pdbx_chi_squared 1.667 _reflns.pdbx_redundancy 28.500 _reflns.percent_possible_obs 99.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.95 2.02 ? ? ? 0.473 ? ? 0.957 29.00 ? 1212 100.00 ? 1 2.02 2.10 ? ? ? 0.340 ? ? 1.236 28.90 ? 1211 100.00 ? 2 2.10 2.20 ? ? ? 0.204 ? ? 1.127 29.10 ? 1214 100.00 ? 3 2.20 2.31 ? ? ? 0.165 ? ? 1.451 28.70 ? 1215 100.00 ? 4 2.31 2.46 ? ? ? 0.108 ? ? 1.438 29.10 ? 1214 100.00 ? 5 2.46 2.65 ? ? ? 0.085 ? ? 1.553 28.80 ? 1238 100.00 ? 6 2.65 2.91 ? ? ? 0.071 ? ? 1.757 28.90 ? 1227 100.00 ? 7 2.91 3.33 ? ? ? 0.058 ? ? 1.844 28.60 ? 1235 99.90 ? 8 3.33 4.20 ? ? ? 0.047 ? ? 1.782 28.20 ? 1264 99.90 ? 9 4.20 50.00 ? ? ? 0.047 ? ? 3.631 25.80 ? 1289 96.50 ? 10 # _refine.entry_id 3K2A _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 25.130 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.170 _refine.ls_number_reflns_obs 12250 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_R_work 0.215 _refine.ls_wR_factor_R_work 0.220 _refine.ls_R_factor_R_free 0.239 _refine.ls_wR_factor_R_free 0.238 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 590 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.967 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.410 _refine.aniso_B[2][2] 0.410 _refine.aniso_B[3][3] -0.810 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.138 _refine.overall_SU_ML 0.092 _refine.overall_SU_B 7.039 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 61.75 _refine.B_iso_min 20.69 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 931 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 989 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 25.130 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 962 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1303 1.082 1.924 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 109 4.238 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 49 38.850 23.673 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 169 13.549 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 10.084 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 141 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 731 0.005 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 565 0.776 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 917 1.473 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 397 2.055 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 386 3.337 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.997 1.947 895 99.888 843 0.245 51 0.317 . . . . . 'X-RAY DIFFRACTION' 20 2.052 1.997 868 99.309 815 0.247 47 0.296 . . . . . 'X-RAY DIFFRACTION' 20 2.111 2.052 845 100.000 808 0.247 37 0.233 . . . . . 'X-RAY DIFFRACTION' 20 2.175 2.111 817 99.878 781 0.247 35 0.242 . . . . . 'X-RAY DIFFRACTION' 20 2.246 2.175 793 99.496 753 0.220 36 0.271 . . . . . 'X-RAY DIFFRACTION' 20 2.324 2.246 774 98.837 706 0.219 59 0.235 . . . . . 'X-RAY DIFFRACTION' 20 2.411 2.324 751 99.734 725 0.198 24 0.275 . . . . . 'X-RAY DIFFRACTION' 20 2.509 2.411 721 98.752 682 0.228 30 0.289 . . . . . 'X-RAY DIFFRACTION' 20 2.619 2.509 701 99.572 664 0.235 34 0.169 . . . . . 'X-RAY DIFFRACTION' 20 2.745 2.619 657 99.848 621 0.221 35 0.292 . . . . . 'X-RAY DIFFRACTION' 20 2.892 2.745 638 98.903 598 0.239 33 0.220 . . . . . 'X-RAY DIFFRACTION' 20 3.065 2.892 600 99.500 575 0.221 22 0.355 . . . . . 'X-RAY DIFFRACTION' 20 3.273 3.065 568 98.768 534 0.219 27 0.171 . . . . . 'X-RAY DIFFRACTION' 20 3.530 3.273 541 99.445 513 0.211 25 0.247 . . . . . 'X-RAY DIFFRACTION' 20 3.860 3.530 495 99.596 476 0.186 17 0.218 . . . . . 'X-RAY DIFFRACTION' 20 4.303 3.860 449 99.109 427 0.189 18 0.194 . . . . . 'X-RAY DIFFRACTION' 20 4.944 4.303 411 100.000 387 0.174 24 0.242 . . . . . 'X-RAY DIFFRACTION' 20 5.997 4.944 352 99.716 337 0.228 14 0.210 . . . . . 'X-RAY DIFFRACTION' 20 8.250 5.997 288 98.958 272 0.241 13 0.240 . . . . . 'X-RAY DIFFRACTION' 20 25.125 8.250 189 80.423 143 0.228 9 0.251 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3K2A _struct.title 'Crystal structure of the homeobox domain of human homeobox protein Meis2' _struct.pdbx_descriptor 'Homeobox protein Meis2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3K2A _struct_keywords.text 'homeobox domain, human homeobox protein MEIS2, DNA-binding, transcription, Homeobox, Nucleus, Phosphoprotein, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 6 ? HIS A 20 ? PRO A 284 HIS A 298 1 ? 15 HELX_P HELX_P2 2 SER A 27 ? GLY A 39 ? SER A 305 GLY A 317 1 ? 13 HELX_P HELX_P3 3 THR A 41 ? GLN A 58 ? THR A 319 GLN A 336 1 ? 18 HELX_P HELX_P4 4 PRO B 6 ? HIS B 20 ? PRO B 284 HIS B 298 1 ? 15 HELX_P HELX_P5 5 SER B 27 ? GLY B 39 ? SER B 305 GLY B 317 1 ? 13 HELX_P HELX_P6 6 THR B 41 ? GLN B 58 ? THR B 319 GLN B 336 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 12 C ? ? ? 1_555 A MSE 13 N ? ? A ILE 290 A MSE 291 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 13 C ? ? ? 1_555 A ARG 14 N ? ? A MSE 291 A ARG 292 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A PRO 59 C ? ? ? 1_555 A MSE 60 N ? ? A PRO 337 A MSE 338 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? B ILE 12 C ? ? ? 1_555 B MSE 13 N ? ? B ILE 290 B MSE 291 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? B MSE 13 C ? ? ? 1_555 B ARG 14 N ? ? B MSE 291 B ARG 292 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? B PRO 59 C ? ? ? 1_555 B MSE 60 N ? ? B PRO 337 B MSE 338 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 500' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT A 510' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL B 500' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT B 510' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH G . ? HOH A 4 . ? 7_556 ? 2 AC1 4 HOH G . ? HOH A 4 . ? 1_555 ? 3 AC1 4 ARG A 14 ? ARG A 292 . ? 1_555 ? 4 AC1 4 ARG A 14 ? ARG A 292 . ? 7_556 ? 5 AC2 3 GLN A 19 ? GLN A 297 . ? 1_555 ? 6 AC2 3 LEU A 21 ? LEU A 299 . ? 7_556 ? 7 AC2 3 ARG B 53 ? ARG B 331 . ? 7_556 ? 8 AC3 4 HOH H . ? HOH B 1 . ? 1_555 ? 9 AC3 4 HOH H . ? HOH B 1 . ? 6_566 ? 10 AC3 4 ARG B 14 ? ARG B 292 . ? 6_566 ? 11 AC3 4 ARG B 14 ? ARG B 292 . ? 1_555 ? 12 AC4 3 ARG A 53 ? ARG A 331 . ? 6_566 ? 13 AC4 3 GLN B 19 ? GLN B 297 . ? 1_555 ? 14 AC4 3 LEU B 21 ? LEU B 299 . ? 6_566 ? # _atom_sites.entry_id 3K2A _atom_sites.fract_transf_matrix[1][1] 0.008803 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008803 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019900 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 279 ? ? ? A . n A 1 2 SER 2 280 ? ? ? A . n A 1 3 GLY 3 281 ? ? ? A . n A 1 4 ILE 4 282 ? ? ? A . n A 1 5 PHE 5 283 ? ? ? A . n A 1 6 PRO 6 284 284 PRO PRO A . n A 1 7 LYS 7 285 285 LYS LYS A . n A 1 8 VAL 8 286 286 VAL VAL A . n A 1 9 ALA 9 287 287 ALA ALA A . n A 1 10 THR 10 288 288 THR THR A . n A 1 11 ASN 11 289 289 ASN ASN A . n A 1 12 ILE 12 290 290 ILE ILE A . n A 1 13 MSE 13 291 291 MSE MSE A . n A 1 14 ARG 14 292 292 ARG ARG A . n A 1 15 ALA 15 293 293 ALA ALA A . n A 1 16 TRP 16 294 294 TRP TRP A . n A 1 17 LEU 17 295 295 LEU LEU A . n A 1 18 PHE 18 296 296 PHE PHE A . n A 1 19 GLN 19 297 297 GLN GLN A . n A 1 20 HIS 20 298 298 HIS HIS A . n A 1 21 LEU 21 299 299 LEU LEU A . n A 1 22 THR 22 300 300 THR THR A . n A 1 23 HIS 23 301 301 HIS HIS A . n A 1 24 PRO 24 302 302 PRO PRO A . n A 1 25 TYR 25 303 303 TYR TYR A . n A 1 26 PRO 26 304 304 PRO PRO A . n A 1 27 SER 27 305 305 SER SER A . n A 1 28 GLU 28 306 306 GLU GLU A . n A 1 29 GLU 29 307 307 GLU GLU A . n A 1 30 GLN 30 308 308 GLN GLN A . n A 1 31 LYS 31 309 309 LYS LYS A . n A 1 32 LYS 32 310 310 LYS LYS A . n A 1 33 GLN 33 311 311 GLN GLN A . n A 1 34 LEU 34 312 312 LEU LEU A . n A 1 35 ALA 35 313 313 ALA ALA A . n A 1 36 GLN 36 314 314 GLN GLN A . n A 1 37 ASP 37 315 315 ASP ASP A . n A 1 38 THR 38 316 316 THR THR A . n A 1 39 GLY 39 317 317 GLY GLY A . n A 1 40 LEU 40 318 318 LEU LEU A . n A 1 41 THR 41 319 319 THR THR A . n A 1 42 ILE 42 320 320 ILE ILE A . n A 1 43 LEU 43 321 321 LEU LEU A . n A 1 44 GLN 44 322 322 GLN GLN A . n A 1 45 VAL 45 323 323 VAL VAL A . n A 1 46 ASN 46 324 324 ASN ASN A . n A 1 47 ASN 47 325 325 ASN ASN A . n A 1 48 TRP 48 326 326 TRP TRP A . n A 1 49 PHE 49 327 327 PHE PHE A . n A 1 50 ILE 50 328 328 ILE ILE A . n A 1 51 ASN 51 329 329 ASN ASN A . n A 1 52 ALA 52 330 330 ALA ALA A . n A 1 53 ARG 53 331 331 ARG ARG A . n A 1 54 ARG 54 332 332 ARG ARG A . n A 1 55 ARG 55 333 333 ARG ARG A . n A 1 56 ILE 56 334 334 ILE ILE A . n A 1 57 VAL 57 335 335 VAL VAL A . n A 1 58 GLN 58 336 336 GLN GLN A . n A 1 59 PRO 59 337 337 PRO PRO A . n A 1 60 MSE 60 338 338 MSE MSE A . n A 1 61 ILE 61 339 ? ? ? A . n A 1 62 ASP 62 340 ? ? ? A . n A 1 63 GLN 63 341 ? ? ? A . n A 1 64 SER 64 342 ? ? ? A . n A 1 65 ASN 65 343 ? ? ? A . n A 1 66 ARG 66 344 ? ? ? A . n A 1 67 ALA 67 345 ? ? ? A . n B 1 1 GLY 1 279 ? ? ? B . n B 1 2 SER 2 280 ? ? ? B . n B 1 3 GLY 3 281 ? ? ? B . n B 1 4 ILE 4 282 ? ? ? B . n B 1 5 PHE 5 283 283 PHE PHE B . n B 1 6 PRO 6 284 284 PRO PRO B . n B 1 7 LYS 7 285 285 LYS LYS B . n B 1 8 VAL 8 286 286 VAL VAL B . n B 1 9 ALA 9 287 287 ALA ALA B . n B 1 10 THR 10 288 288 THR THR B . n B 1 11 ASN 11 289 289 ASN ASN B . n B 1 12 ILE 12 290 290 ILE ILE B . n B 1 13 MSE 13 291 291 MSE MSE B . n B 1 14 ARG 14 292 292 ARG ARG B . n B 1 15 ALA 15 293 293 ALA ALA B . n B 1 16 TRP 16 294 294 TRP TRP B . n B 1 17 LEU 17 295 295 LEU LEU B . n B 1 18 PHE 18 296 296 PHE PHE B . n B 1 19 GLN 19 297 297 GLN GLN B . n B 1 20 HIS 20 298 298 HIS HIS B . n B 1 21 LEU 21 299 299 LEU LEU B . n B 1 22 THR 22 300 300 THR THR B . n B 1 23 HIS 23 301 301 HIS HIS B . n B 1 24 PRO 24 302 302 PRO PRO B . n B 1 25 TYR 25 303 303 TYR TYR B . n B 1 26 PRO 26 304 304 PRO PRO B . n B 1 27 SER 27 305 305 SER SER B . n B 1 28 GLU 28 306 306 GLU GLU B . n B 1 29 GLU 29 307 307 GLU GLU B . n B 1 30 GLN 30 308 308 GLN GLN B . n B 1 31 LYS 31 309 309 LYS LYS B . n B 1 32 LYS 32 310 310 LYS LYS B . n B 1 33 GLN 33 311 311 GLN GLN B . n B 1 34 LEU 34 312 312 LEU LEU B . n B 1 35 ALA 35 313 313 ALA ALA B . n B 1 36 GLN 36 314 314 GLN GLN B . n B 1 37 ASP 37 315 315 ASP ASP B . n B 1 38 THR 38 316 316 THR THR B . n B 1 39 GLY 39 317 317 GLY GLY B . n B 1 40 LEU 40 318 318 LEU LEU B . n B 1 41 THR 41 319 319 THR THR B . n B 1 42 ILE 42 320 320 ILE ILE B . n B 1 43 LEU 43 321 321 LEU LEU B . n B 1 44 GLN 44 322 322 GLN GLN B . n B 1 45 VAL 45 323 323 VAL VAL B . n B 1 46 ASN 46 324 324 ASN ASN B . n B 1 47 ASN 47 325 325 ASN ASN B . n B 1 48 TRP 48 326 326 TRP TRP B . n B 1 49 PHE 49 327 327 PHE PHE B . n B 1 50 ILE 50 328 328 ILE ILE B . n B 1 51 ASN 51 329 329 ASN ASN B . n B 1 52 ALA 52 330 330 ALA ALA B . n B 1 53 ARG 53 331 331 ARG ARG B . n B 1 54 ARG 54 332 332 ARG ARG B . n B 1 55 ARG 55 333 333 ARG ARG B . n B 1 56 ILE 56 334 334 ILE ILE B . n B 1 57 VAL 57 335 335 VAL VAL B . n B 1 58 GLN 58 336 336 GLN GLN B . n B 1 59 PRO 59 337 337 PRO PRO B . n B 1 60 MSE 60 338 338 MSE MSE B . n B 1 61 ILE 61 339 ? ? ? B . n B 1 62 ASP 62 340 ? ? ? B . n B 1 63 GLN 63 341 ? ? ? B . n B 1 64 SER 64 342 ? ? ? B . n B 1 65 ASN 65 343 ? ? ? B . n B 1 66 ARG 66 344 ? ? ? B . n B 1 67 ALA 67 345 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 500 500 CL CL A . D 3 ACT 1 510 510 ACT ACT A . E 2 CL 1 500 500 CL CL B . F 3 ACT 1 510 510 ACT ACT B . G 4 HOH 1 3 3 HOH HOH A . G 4 HOH 2 4 4 HOH HOH A . G 4 HOH 3 5 5 HOH HOH A . G 4 HOH 4 6 6 HOH HOH A . G 4 HOH 5 7 7 HOH HOH A . G 4 HOH 6 12 12 HOH HOH A . G 4 HOH 7 13 13 HOH HOH A . G 4 HOH 8 14 14 HOH HOH A . G 4 HOH 9 15 15 HOH HOH A . G 4 HOH 10 16 16 HOH HOH A . G 4 HOH 11 17 17 HOH HOH A . G 4 HOH 12 18 18 HOH HOH A . G 4 HOH 13 21 21 HOH HOH A . G 4 HOH 14 22 22 HOH HOH A . G 4 HOH 15 23 23 HOH HOH A . G 4 HOH 16 30 30 HOH HOH A . G 4 HOH 17 33 33 HOH HOH A . G 4 HOH 18 34 34 HOH HOH A . G 4 HOH 19 35 35 HOH HOH A . G 4 HOH 20 36 36 HOH HOH A . G 4 HOH 21 37 37 HOH HOH A . G 4 HOH 22 38 38 HOH HOH A . G 4 HOH 23 39 39 HOH HOH A . G 4 HOH 24 42 42 HOH HOH A . G 4 HOH 25 43 43 HOH HOH A . G 4 HOH 26 44 44 HOH HOH A . G 4 HOH 27 45 45 HOH HOH A . G 4 HOH 28 46 46 HOH HOH A . G 4 HOH 29 47 47 HOH HOH A . G 4 HOH 30 48 48 HOH HOH A . H 4 HOH 1 1 1 HOH HOH B . H 4 HOH 2 2 2 HOH HOH B . H 4 HOH 3 8 8 HOH HOH B . H 4 HOH 4 9 9 HOH HOH B . H 4 HOH 5 10 10 HOH HOH B . H 4 HOH 6 11 11 HOH HOH B . H 4 HOH 7 19 19 HOH HOH B . H 4 HOH 8 20 20 HOH HOH B . H 4 HOH 9 24 24 HOH HOH B . H 4 HOH 10 25 25 HOH HOH B . H 4 HOH 11 26 26 HOH HOH B . H 4 HOH 12 27 27 HOH HOH B . H 4 HOH 13 28 28 HOH HOH B . H 4 HOH 14 29 29 HOH HOH B . H 4 HOH 15 31 31 HOH HOH B . H 4 HOH 16 32 32 HOH HOH B . H 4 HOH 17 40 40 HOH HOH B . H 4 HOH 18 41 41 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 291 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 338 ? MET SELENOMETHIONINE 3 B MSE 13 B MSE 291 ? MET SELENOMETHIONINE 4 B MSE 60 B MSE 338 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA hexadecameric 16 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H 3 1,2,3,4,5,6,7,8 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 33190 ? 3 MORE -260 ? 3 'SSA (A^2)' 39020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 113.5970000000 0.0000000000 -1.0000000000 0.0000000000 113.5970000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 113.5970000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 113.5970000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 113.5970000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 50.2510000000 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 113.5970000000 0.0000000000 0.0000000000 -1.0000000000 50.2510000000 7 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 50.2510000000 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 113.5970000000 -1.0000000000 0.0000000000 0.0000000000 113.5970000000 0.0000000000 0.0000000000 -1.0000000000 50.2510000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 500 ? C CL . 2 1 B CL 500 ? E CL . 3 1 A HOH 37 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 34.1210 39.9710 14.9980 0.0879 0.0485 0.0567 -0.0564 0.0162 -0.0288 1.8310 3.0843 2.2103 -0.3800 -0.1380 1.0562 0.0457 0.0309 -0.0765 -0.0304 0.0023 -0.0110 -0.2415 -0.2425 0.1187 'X-RAY DIFFRACTION' 2 ? refined 28.6800 52.7200 35.4760 0.1172 0.0212 0.0563 -0.0198 0.0552 -0.0225 1.2856 6.0776 1.1120 -0.5094 -0.0491 1.2554 -0.0770 0.0490 0.0281 -0.0078 0.0058 0.2093 0.3120 0.0121 -0.0671 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 284 A 338 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 283 B 338 ? . . . . ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.R_cullis_centric ISO_1 24.16 1.95 10574 1616 0.000 0.000 ANO_1 24.16 1.95 10567 0 0.423 0.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.R_cullis_centric ISO_1 24.16 8.23 101 55 0.000 0.000 ISO_1 8.23 5.99 200 83 0.000 0.000 ISO_1 5.99 4.94 268 81 0.000 0.000 ISO_1 4.94 4.30 325 81 0.000 0.000 ISO_1 4.30 3.86 362 83 0.000 0.000 ISO_1 3.86 3.53 412 81 0.000 0.000 ISO_1 3.53 3.28 449 84 0.000 0.000 ISO_1 3.28 3.07 480 79 0.000 0.000 ISO_1 3.07 2.90 510 85 0.000 0.000 ISO_1 2.90 2.75 545 85 0.000 0.000 ISO_1 2.75 2.62 577 76 0.000 0.000 ISO_1 2.62 2.51 612 77 0.000 0.000 ISO_1 2.51 2.41 624 89 0.000 0.000 ISO_1 2.41 2.33 657 81 0.000 0.000 ISO_1 2.33 2.25 686 83 0.000 0.000 ISO_1 2.25 2.18 704 82 0.000 0.000 ISO_1 2.18 2.11 732 76 0.000 0.000 ISO_1 2.11 2.05 760 92 0.000 0.000 ISO_1 2.05 2.00 765 82 0.000 0.000 ISO_1 2.00 1.95 805 81 0.000 0.000 ANO_1 24.16 8.23 96 0 0.445 0.000 ANO_1 8.23 5.99 199 0 0.246 0.000 ANO_1 5.99 4.94 268 0 0.257 0.000 ANO_1 4.94 4.30 325 0 0.286 0.000 ANO_1 4.30 3.86 362 0 0.329 0.000 ANO_1 3.86 3.53 412 0 0.320 0.000 ANO_1 3.53 3.28 449 0 0.300 0.000 ANO_1 3.28 3.07 480 0 0.319 0.000 ANO_1 3.07 2.90 510 0 0.333 0.000 ANO_1 2.90 2.75 545 0 0.332 0.000 ANO_1 2.75 2.62 577 0 0.351 0.000 ANO_1 2.62 2.51 612 0 0.420 0.000 ANO_1 2.51 2.41 624 0 0.470 0.000 ANO_1 2.41 2.33 657 0 0.509 0.000 ANO_1 2.33 2.25 686 0 0.568 0.000 ANO_1 2.25 2.18 704 0 0.642 0.000 ANO_1 2.18 2.11 732 0 0.691 0.000 ANO_1 2.11 2.05 760 0 0.767 0.000 ANO_1 2.05 2.00 764 0 0.846 0.000 ANO_1 2.00 1.95 805 0 0.886 0.000 # _pdbx_phasing_dm.entry_id 3K2A _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 12190 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.720 100.000 62.200 ? ? ? 0.809 ? ? 505 4.560 5.720 56.500 ? ? ? 0.912 ? ? 503 3.970 4.560 56.000 ? ? ? 0.933 ? ? 510 3.590 3.970 55.500 ? ? ? 0.925 ? ? 509 3.330 3.590 61.100 ? ? ? 0.908 ? ? 506 3.130 3.330 59.200 ? ? ? 0.914 ? ? 504 2.970 3.130 56.300 ? ? ? 0.893 ? ? 501 2.840 2.970 55.800 ? ? ? 0.901 ? ? 506 2.730 2.840 59.100 ? ? ? 0.884 ? ? 503 2.630 2.730 55.000 ? ? ? 0.895 ? ? 505 2.550 2.630 53.600 ? ? ? 0.884 ? ? 515 2.470 2.550 58.100 ? ? ? 0.895 ? ? 511 2.400 2.470 60.200 ? ? ? 0.883 ? ? 510 2.340 2.400 55.700 ? ? ? 0.879 ? ? 513 2.290 2.340 55.400 ? ? ? 0.876 ? ? 512 2.240 2.290 63.200 ? ? ? 0.876 ? ? 537 2.190 2.240 62.300 ? ? ? 0.873 ? ? 536 2.140 2.190 61.100 ? ? ? 0.876 ? ? 560 2.100 2.140 64.900 ? ? ? 0.843 ? ? 559 2.060 2.100 67.700 ? ? ? 0.866 ? ? 585 2.020 2.060 67.300 ? ? ? 0.790 ? ? 585 1.990 2.020 73.300 ? ? ? 0.778 ? ? 596 1.950 1.990 71.800 ? ? ? 0.708 ? ? 619 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 4 DM 5.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC refmac_5.5.0102 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 JDirector . ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 301 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.30 _pdbx_validate_torsion.psi 73.61 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 279 ? A GLY 1 2 1 Y 1 A SER 280 ? A SER 2 3 1 Y 1 A GLY 281 ? A GLY 3 4 1 Y 1 A ILE 282 ? A ILE 4 5 1 Y 1 A PHE 283 ? A PHE 5 6 1 Y 1 A ILE 339 ? A ILE 61 7 1 Y 1 A ASP 340 ? A ASP 62 8 1 Y 1 A GLN 341 ? A GLN 63 9 1 Y 1 A SER 342 ? A SER 64 10 1 Y 1 A ASN 343 ? A ASN 65 11 1 Y 1 A ARG 344 ? A ARG 66 12 1 Y 1 A ALA 345 ? A ALA 67 13 1 Y 1 B GLY 279 ? B GLY 1 14 1 Y 1 B SER 280 ? B SER 2 15 1 Y 1 B GLY 281 ? B GLY 3 16 1 Y 1 B ILE 282 ? B ILE 4 17 1 Y 1 B ILE 339 ? B ILE 61 18 1 Y 1 B ASP 340 ? B ASP 62 19 1 Y 1 B GLN 341 ? B GLN 63 20 1 Y 1 B SER 342 ? B SER 64 21 1 Y 1 B ASN 343 ? B ASN 65 22 1 Y 1 B ARG 344 ? B ARG 66 23 1 Y 1 B ALA 345 ? B ALA 67 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'ACETATE ION' ACT 4 water HOH #