data_3KAF # _entry.id 3KAF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KAF pdb_00003kaf 10.2210/pdb3kaf/pdb RCSB RCSB055748 ? ? WWPDB D_1000055748 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KAB . unspecified PDB 3KAC . unspecified PDB 3KAD . unspecified PDB 3KAG . unspecified PDB 3KAH . unspecified PDB 3KAI . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KAF _pdbx_database_status.recvd_initial_deposition_date 2009-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, L.M.' 1 'Dokurno, P.' 2 'Robinson, D.A.' 3 'Surgenor, A.E.' 4 'Murray, J.B.' 5 'Potter, A.J.' 6 'Moore, J.D.' 7 # _citation.id primary _citation.title 'Structure-guided design of alpha-amino acid-derived Pin1 inhibitors' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 20 _citation.page_first 586 _citation.page_last 590 _citation.year 2010 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19969456 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2009.11.090 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Potter, A.J.' 1 ? primary 'Ray, S.' 2 ? primary 'Gueritz, L.' 3 ? primary 'Nunns, C.L.' 4 ? primary 'Bryant, C.J.' 5 ? primary 'Scrace, S.F.' 6 ? primary 'Matassova, N.' 7 ? primary 'Baker, L.M.' 8 ? primary 'Dokurno, P.' 9 ? primary 'Robinson, D.A.' 10 ? primary 'Surgenor, A.E.' 11 ? primary 'Davis, B.' 12 ? primary 'Murray, J.B.' 13 ? primary 'Richardson, C.M.' 14 ? primary 'Moore, J.D.' 15 ? # _cell.entry_id 3KAF _cell.length_a 67.937 _cell.length_b 67.937 _cell.length_c 79.247 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KAF _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1' 18467.475 1 5.2.1.8 'R14A, Q131A' ? ? 2 non-polymer syn '3-(1H-benzimidazol-2-yl)-N-(1-benzothiophen-2-ylcarbonyl)-D-alanine' 365.406 1 ? ? ? ? 3 water nat water 18.015 48 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotamase Pin1, PPIase Pin1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 GLY n 1 5 MET n 1 6 ALA n 1 7 ASP n 1 8 GLU n 1 9 GLU n 1 10 LYS n 1 11 LEU n 1 12 PRO n 1 13 PRO n 1 14 GLY n 1 15 TRP n 1 16 GLU n 1 17 LYS n 1 18 ALA n 1 19 MET n 1 20 SER n 1 21 ARG n 1 22 SER n 1 23 SER n 1 24 GLY n 1 25 ARG n 1 26 VAL n 1 27 TYR n 1 28 TYR n 1 29 PHE n 1 30 ASN n 1 31 HIS n 1 32 ILE n 1 33 THR n 1 34 ASN n 1 35 ALA n 1 36 SER n 1 37 GLN n 1 38 TRP n 1 39 GLU n 1 40 ARG n 1 41 PRO n 1 42 SER n 1 43 GLY n 1 44 ASN n 1 45 SER n 1 46 SER n 1 47 SER n 1 48 GLY n 1 49 GLY n 1 50 LYS n 1 51 ASN n 1 52 GLY n 1 53 GLN n 1 54 GLY n 1 55 GLU n 1 56 PRO n 1 57 ALA n 1 58 ARG n 1 59 VAL n 1 60 ARG n 1 61 CYS n 1 62 SER n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 VAL n 1 67 LYS n 1 68 HIS n 1 69 SER n 1 70 GLN n 1 71 SER n 1 72 ARG n 1 73 ARG n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 TRP n 1 78 ARG n 1 79 GLN n 1 80 GLU n 1 81 LYS n 1 82 ILE n 1 83 THR n 1 84 ARG n 1 85 THR n 1 86 LYS n 1 87 GLU n 1 88 GLU n 1 89 ALA n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 ILE n 1 94 ASN n 1 95 GLY n 1 96 TYR n 1 97 ILE n 1 98 GLN n 1 99 LYS n 1 100 ILE n 1 101 LYS n 1 102 SER n 1 103 GLY n 1 104 GLU n 1 105 GLU n 1 106 ASP n 1 107 PHE n 1 108 GLU n 1 109 SER n 1 110 LEU n 1 111 ALA n 1 112 SER n 1 113 GLN n 1 114 PHE n 1 115 SER n 1 116 ASP n 1 117 CYS n 1 118 SER n 1 119 SER n 1 120 ALA n 1 121 LYS n 1 122 ALA n 1 123 ARG n 1 124 GLY n 1 125 ASP n 1 126 LEU n 1 127 GLY n 1 128 ALA n 1 129 PHE n 1 130 SER n 1 131 ARG n 1 132 GLY n 1 133 GLN n 1 134 MET n 1 135 ALA n 1 136 LYS n 1 137 PRO n 1 138 PHE n 1 139 GLU n 1 140 ASP n 1 141 ALA n 1 142 SER n 1 143 PHE n 1 144 ALA n 1 145 LEU n 1 146 ARG n 1 147 THR n 1 148 GLY n 1 149 GLU n 1 150 MET n 1 151 SER n 1 152 GLY n 1 153 PRO n 1 154 VAL n 1 155 PHE n 1 156 THR n 1 157 ASP n 1 158 SER n 1 159 GLY n 1 160 ILE n 1 161 HIS n 1 162 ILE n 1 163 ILE n 1 164 LEU n 1 165 ARG n 1 166 THR n 1 167 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIN1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PIN1_HUMAN _struct_ref.pdbx_db_accession Q13526 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITR TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL RTE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KAF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13526 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KAF GLY A 1 ? UNP Q13526 ? ? 'expression tag' -3 1 1 3KAF SER A 2 ? UNP Q13526 ? ? 'expression tag' -2 2 1 3KAF HIS A 3 ? UNP Q13526 ? ? 'expression tag' -1 3 1 3KAF GLY A 4 ? UNP Q13526 ? ? 'expression tag' 0 4 1 3KAF ALA A 18 ? UNP Q13526 ARG 14 'engineered mutation' 14 5 1 3KAF ALA A 135 ? UNP Q13526 GLN 131 'engineered mutation' 131 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4D9 non-polymer . '3-(1H-benzimidazol-2-yl)-N-(1-benzothiophen-2-ylcarbonyl)-D-alanine' '(R)-2-[(Benzo[b]thiophene-2-carbonyl)-amino]-3-(1H-benzoimidazol-2-yl)-propionic acid' 'C19 H15 N3 O3 S' 365.406 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KAF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2.2M Ammonium sulphate, 0.1M HEPES buffer, 1% PEG 400, 5mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2006-11-03 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3KAF _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 27.6 _reflns.d_resolution_high 2.30 _reflns.number_obs 9395 _reflns.number_all 9395 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.438 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 885 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3KAF _refine.ls_number_reflns_obs 8939 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.6 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 96.05 _refine.ls_R_factor_obs 0.23048 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22664 _refine.ls_R_factor_R_free 0.31195 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 452 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.B_iso_mean 46.677 _refine.aniso_B[1][1] 2.26 _refine.aniso_B[2][2] 2.26 _refine.aniso_B[3][3] -3.39 _refine.aniso_B[1][2] 1.13 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1PIN' _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.296 _refine.pdbx_overall_ESU_R_Free 0.274 _refine.overall_SU_ML 0.213 _refine.overall_SU_B 9.040 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1152 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 1226 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 27.6 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 1204 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.908 1.972 ? 1620 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.527 5.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.744 22.456 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.609 15.000 ? 207 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.382 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 163 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 932 'X-RAY DIFFRACTION' ? r_mcbond_it 1.094 1.500 ? 721 'X-RAY DIFFRACTION' ? r_mcangle_it 1.983 2.000 ? 1154 'X-RAY DIFFRACTION' ? r_scbond_it 2.600 3.000 ? 483 'X-RAY DIFFRACTION' ? r_scangle_it 4.157 4.500 ? 466 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 674 _refine_ls_shell.R_factor_R_work 0.355 _refine_ls_shell.percent_reflns_obs 99.72 _refine_ls_shell.R_factor_R_free 0.394 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 710 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KAF _struct.title 'Structure-guided design of alpha-amino acid-derived Pin1 inhibitors' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KAF _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;SBDD, PPIASE, ISOMERASE, ROTAMASE, SMALL MOLECULE, Proline directed kinase, cell cycle, Oncogenic transformation, Nucleus, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 85 ? SER A 102 ? THR A 81 SER A 98 1 ? 18 HELX_P HELX_P2 2 ASP A 106 ? SER A 115 ? ASP A 102 SER A 111 1 ? 10 HELX_P HELX_P3 3 CYS A 117 ? ARG A 123 ? CYS A 113 ARG A 119 5 ? 7 HELX_P HELX_P4 4 ALA A 135 ? LEU A 145 ? ALA A 131 LEU A 141 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 15 ? MET A 19 ? TRP A 11 MET A 15 A 2 VAL A 26 ? ASN A 30 ? VAL A 22 ASN A 26 A 3 SER A 36 ? GLN A 37 ? SER A 32 GLN A 33 B 1 ASP A 125 ? SER A 130 ? ASP A 121 SER A 126 B 2 ARG A 58 ? VAL A 66 ? ARG A 54 VAL A 62 B 3 GLY A 159 ? GLU A 167 ? GLY A 155 GLU A 163 B 4 VAL A 154 ? THR A 156 ? VAL A 150 THR A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 16 ? N GLU A 12 O PHE A 29 ? O PHE A 25 A 2 3 N TYR A 28 ? N TYR A 24 O GLN A 37 ? O GLN A 33 B 1 2 O PHE A 129 ? O PHE A 125 N VAL A 59 ? N VAL A 55 B 2 3 N SER A 62 ? N SER A 58 O LEU A 164 ? O LEU A 160 B 3 4 O HIS A 161 ? O HIS A 157 N VAL A 154 ? N VAL A 150 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 4D9 _struct_site.pdbx_auth_seq_id 164 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE 4D9 A 164' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 HIS A 63 ? HIS A 59 . ? 1_555 ? 2 AC1 11 LYS A 67 ? LYS A 63 . ? 1_555 ? 3 AC1 11 CYS A 117 ? CYS A 113 . ? 1_555 ? 4 AC1 11 SER A 118 ? SER A 114 . ? 1_555 ? 5 AC1 11 LEU A 126 ? LEU A 122 . ? 1_555 ? 6 AC1 11 MET A 134 ? MET A 130 . ? 1_555 ? 7 AC1 11 PHE A 138 ? PHE A 134 . ? 1_555 ? 8 AC1 11 SER A 158 ? SER A 154 . ? 1_555 ? 9 AC1 11 HIS A 161 ? HIS A 157 . ? 1_555 ? 10 AC1 11 HOH C . ? HOH A 171 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 203 . ? 3_654 ? # _database_PDB_matrix.entry_id 3KAF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KAF _atom_sites.fract_transf_matrix[1][1] 0.014719 _atom_sites.fract_transf_matrix[1][2] 0.008498 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016997 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012619 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 ALA 6 2 ? ? ? A . n A 1 7 ASP 7 3 ? ? ? A . n A 1 8 GLU 8 4 ? ? ? A . n A 1 9 GLU 9 5 ? ? ? A . n A 1 10 LYS 10 6 ? ? ? A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 PRO 12 8 8 PRO PRO A . n A 1 13 PRO 13 9 9 PRO PRO A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 TRP 15 11 11 TRP TRP A . n A 1 16 GLU 16 12 12 GLU GLU A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 MET 19 15 15 MET MET A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 SER 22 18 18 SER SER A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 GLY 24 20 20 GLY GLY A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 VAL 26 22 22 VAL VAL A . n A 1 27 TYR 27 23 23 TYR TYR A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 ASN 30 26 26 ASN ASN A . n A 1 31 HIS 31 27 27 HIS HIS A . n A 1 32 ILE 32 28 28 ILE ILE A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 ALA 35 31 31 ALA ALA A . n A 1 36 SER 36 32 32 SER SER A . n A 1 37 GLN 37 33 33 GLN GLN A . n A 1 38 TRP 38 34 34 TRP TRP A . n A 1 39 GLU 39 35 35 GLU GLU A . n A 1 40 ARG 40 36 36 ARG ARG A . n A 1 41 PRO 41 37 37 PRO PRO A . n A 1 42 SER 42 38 38 SER SER A . n A 1 43 GLY 43 39 ? ? ? A . n A 1 44 ASN 44 40 ? ? ? A . n A 1 45 SER 45 41 ? ? ? A . n A 1 46 SER 46 42 ? ? ? A . n A 1 47 SER 47 43 ? ? ? A . n A 1 48 GLY 48 44 ? ? ? A . n A 1 49 GLY 49 45 ? ? ? A . n A 1 50 LYS 50 46 ? ? ? A . n A 1 51 ASN 51 47 ? ? ? A . n A 1 52 GLY 52 48 ? ? ? A . n A 1 53 GLN 53 49 ? ? ? A . n A 1 54 GLY 54 50 ? ? ? A . n A 1 55 GLU 55 51 51 GLU GLU A . n A 1 56 PRO 56 52 52 PRO PRO A . n A 1 57 ALA 57 53 53 ALA ALA A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 ARG 60 56 56 ARG ARG A . n A 1 61 CYS 61 57 57 CYS CYS A . n A 1 62 SER 62 58 58 SER SER A . n A 1 63 HIS 63 59 59 HIS HIS A . n A 1 64 LEU 64 60 60 LEU LEU A . n A 1 65 LEU 65 61 61 LEU LEU A . n A 1 66 VAL 66 62 62 VAL VAL A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 HIS 68 64 64 HIS HIS A . n A 1 69 SER 69 65 65 SER SER A . n A 1 70 GLN 70 66 66 GLN GLN A . n A 1 71 SER 71 67 67 SER SER A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 ARG 73 69 69 ARG ARG A . n A 1 74 PRO 74 70 70 PRO PRO A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 SER 76 72 72 SER SER A . n A 1 77 TRP 77 73 73 TRP TRP A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 GLU 80 76 76 GLU GLU A . n A 1 81 LYS 81 77 77 LYS LYS A . n A 1 82 ILE 82 78 78 ILE ILE A . n A 1 83 THR 83 79 79 THR THR A . n A 1 84 ARG 84 80 80 ARG ARG A . n A 1 85 THR 85 81 81 THR THR A . n A 1 86 LYS 86 82 82 LYS LYS A . n A 1 87 GLU 87 83 83 GLU GLU A . n A 1 88 GLU 88 84 84 GLU GLU A . n A 1 89 ALA 89 85 85 ALA ALA A . n A 1 90 LEU 90 86 86 LEU LEU A . n A 1 91 GLU 91 87 87 GLU GLU A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 ILE 93 89 89 ILE ILE A . n A 1 94 ASN 94 90 90 ASN ASN A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 TYR 96 92 92 TYR TYR A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 LYS 99 95 95 LYS LYS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 SER 102 98 98 SER SER A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 PHE 107 103 103 PHE PHE A . n A 1 108 GLU 108 104 104 GLU GLU A . n A 1 109 SER 109 105 105 SER SER A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 ALA 111 107 107 ALA ALA A . n A 1 112 SER 112 108 108 SER SER A . n A 1 113 GLN 113 109 109 GLN GLN A . n A 1 114 PHE 114 110 110 PHE PHE A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 CYS 117 113 113 CYS CYS A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 SER 119 115 115 SER SER A . n A 1 120 ALA 120 116 116 ALA ALA A . n A 1 121 LYS 121 117 117 LYS LYS A . n A 1 122 ALA 122 118 118 ALA ALA A . n A 1 123 ARG 123 119 119 ARG ARG A . n A 1 124 GLY 124 120 120 GLY GLY A . n A 1 125 ASP 125 121 121 ASP ASP A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 GLY 127 123 123 GLY GLY A . n A 1 128 ALA 128 124 124 ALA ALA A . n A 1 129 PHE 129 125 125 PHE PHE A . n A 1 130 SER 130 126 126 SER SER A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 GLN 133 129 129 GLN GLN A . n A 1 134 MET 134 130 130 MET MET A . n A 1 135 ALA 135 131 131 ALA ALA A . n A 1 136 LYS 136 132 132 LYS LYS A . n A 1 137 PRO 137 133 133 PRO PRO A . n A 1 138 PHE 138 134 134 PHE PHE A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 ASP 140 136 136 ASP ASP A . n A 1 141 ALA 141 137 137 ALA ALA A . n A 1 142 SER 142 138 138 SER SER A . n A 1 143 PHE 143 139 139 PHE PHE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 ARG 146 142 142 ARG ARG A . n A 1 147 THR 147 143 143 THR THR A . n A 1 148 GLY 148 144 144 GLY GLY A . n A 1 149 GLU 149 145 145 GLU GLU A . n A 1 150 MET 150 146 146 MET MET A . n A 1 151 SER 151 147 147 SER SER A . n A 1 152 GLY 152 148 148 GLY GLY A . n A 1 153 PRO 153 149 149 PRO PRO A . n A 1 154 VAL 154 150 150 VAL VAL A . n A 1 155 PHE 155 151 151 PHE PHE A . n A 1 156 THR 156 152 152 THR THR A . n A 1 157 ASP 157 153 153 ASP ASP A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 GLY 159 155 155 GLY GLY A . n A 1 160 ILE 160 156 156 ILE ILE A . n A 1 161 HIS 161 157 157 HIS HIS A . n A 1 162 ILE 162 158 158 ILE ILE A . n A 1 163 ILE 163 159 159 ILE ILE A . n A 1 164 LEU 164 160 160 LEU LEU A . n A 1 165 ARG 165 161 161 ARG ARG A . n A 1 166 THR 166 162 162 THR THR A . n A 1 167 GLU 167 163 163 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4D9 1 164 1 4D9 4D9 A . C 3 HOH 1 165 1 HOH HOH A . C 3 HOH 2 166 2 HOH HOH A . C 3 HOH 3 167 3 HOH HOH A . C 3 HOH 4 168 4 HOH HOH A . C 3 HOH 5 169 5 HOH HOH A . C 3 HOH 6 170 6 HOH HOH A . C 3 HOH 7 171 8 HOH HOH A . C 3 HOH 8 172 11 HOH HOH A . C 3 HOH 9 173 12 HOH HOH A . C 3 HOH 10 174 14 HOH HOH A . C 3 HOH 11 175 15 HOH HOH A . C 3 HOH 12 176 16 HOH HOH A . C 3 HOH 13 177 17 HOH HOH A . C 3 HOH 14 178 18 HOH HOH A . C 3 HOH 15 179 19 HOH HOH A . C 3 HOH 16 180 20 HOH HOH A . C 3 HOH 17 181 22 HOH HOH A . C 3 HOH 18 182 25 HOH HOH A . C 3 HOH 19 183 26 HOH HOH A . C 3 HOH 20 184 27 HOH HOH A . C 3 HOH 21 185 28 HOH HOH A . C 3 HOH 22 186 29 HOH HOH A . C 3 HOH 23 187 30 HOH HOH A . C 3 HOH 24 188 32 HOH HOH A . C 3 HOH 25 189 37 HOH HOH A . C 3 HOH 26 190 39 HOH HOH A . C 3 HOH 27 191 40 HOH HOH A . C 3 HOH 28 192 43 HOH HOH A . C 3 HOH 29 193 45 HOH HOH A . C 3 HOH 30 194 47 HOH HOH A . C 3 HOH 31 195 51 HOH HOH A . C 3 HOH 32 196 52 HOH HOH A . C 3 HOH 33 197 57 HOH HOH A . C 3 HOH 34 198 59 HOH HOH A . C 3 HOH 35 199 60 HOH HOH A . C 3 HOH 36 200 61 HOH HOH A . C 3 HOH 37 201 62 HOH HOH A . C 3 HOH 38 202 63 HOH HOH A . C 3 HOH 39 203 64 HOH HOH A . C 3 HOH 40 204 65 HOH HOH A . C 3 HOH 41 205 66 HOH HOH A . C 3 HOH 42 206 67 HOH HOH A . C 3 HOH 43 207 68 HOH HOH A . C 3 HOH 44 208 69 HOH HOH A . C 3 HOH 45 209 70 HOH HOH A . C 3 HOH 46 210 71 HOH HOH A . C 3 HOH 47 211 72 HOH HOH A . C 3 HOH 48 212 73 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 97 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 97 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.334 _pdbx_validate_rmsd_bond.bond_target_value 1.508 _pdbx_validate_rmsd_bond.bond_deviation -0.174 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 97 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 97 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 97 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 133.65 _pdbx_validate_rmsd_angle.angle_target_value 111.90 _pdbx_validate_rmsd_angle.angle_deviation 21.75 _pdbx_validate_rmsd_angle.angle_standard_deviation 3.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -65.28 -158.29 2 1 PRO A 9 ? ? -58.73 99.47 3 1 ASN A 30 ? ? 59.47 16.49 4 1 ARG A 68 ? ? -41.16 -71.33 5 1 PRO A 70 ? ? -73.94 49.47 6 1 SER A 115 ? ? -63.84 0.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 97 ? CE ? A LYS 101 CE 2 1 Y 0 A LYS 97 ? NZ ? A LYS 101 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A MET 1 ? A MET 5 6 1 Y 1 A ALA 2 ? A ALA 6 7 1 Y 1 A ASP 3 ? A ASP 7 8 1 Y 1 A GLU 4 ? A GLU 8 9 1 Y 1 A GLU 5 ? A GLU 9 10 1 Y 1 A LYS 6 ? A LYS 10 11 1 Y 1 A GLY 39 ? A GLY 43 12 1 Y 1 A ASN 40 ? A ASN 44 13 1 Y 1 A SER 41 ? A SER 45 14 1 Y 1 A SER 42 ? A SER 46 15 1 Y 1 A SER 43 ? A SER 47 16 1 Y 1 A GLY 44 ? A GLY 48 17 1 Y 1 A GLY 45 ? A GLY 49 18 1 Y 1 A LYS 46 ? A LYS 50 19 1 Y 1 A ASN 47 ? A ASN 51 20 1 Y 1 A GLY 48 ? A GLY 52 21 1 Y 1 A GLN 49 ? A GLN 53 22 1 Y 1 A GLY 50 ? A GLY 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4D9 C1 C Y N 1 4D9 C2 C Y N 2 4D9 C3 C Y N 3 4D9 C4 C Y N 4 4D9 N5 N Y N 5 4D9 C6 C Y N 6 4D9 C7 C Y N 7 4D9 N8 N Y N 8 4D9 C9 C Y N 9 4D9 C10 C N N 10 4D9 C11 C N R 11 4D9 C12 C N N 12 4D9 N13 N N N 13 4D9 O14 O N N 14 4D9 O15 O N N 15 4D9 C16 C N N 16 4D9 C17 C Y N 17 4D9 O18 O N N 18 4D9 C19 C Y N 19 4D9 S20 S Y N 20 4D9 C21 C Y N 21 4D9 C22 C Y N 22 4D9 C23 C Y N 23 4D9 C24 C Y N 24 4D9 C25 C Y N 25 4D9 C26 C Y N 26 4D9 H1 H N N 27 4D9 H2 H N N 28 4D9 H3 H N N 29 4D9 H4 H N N 30 4D9 H10 H N N 31 4D9 H10A H N N 32 4D9 H11 H N N 33 4D9 HN13 H N N 34 4D9 HO15 H N N 35 4D9 H19 H N N 36 4D9 H23 H N N 37 4D9 H24 H N N 38 4D9 H25 H N N 39 4D9 H26 H N N 40 4D9 HN5 H N N 41 ALA N N N N 42 ALA CA C N S 43 ALA C C N N 44 ALA O O N N 45 ALA CB C N N 46 ALA OXT O N N 47 ALA H H N N 48 ALA H2 H N N 49 ALA HA H N N 50 ALA HB1 H N N 51 ALA HB2 H N N 52 ALA HB3 H N N 53 ALA HXT H N N 54 ARG N N N N 55 ARG CA C N S 56 ARG C C N N 57 ARG O O N N 58 ARG CB C N N 59 ARG CG C N N 60 ARG CD C N N 61 ARG NE N N N 62 ARG CZ C N N 63 ARG NH1 N N N 64 ARG NH2 N N N 65 ARG OXT O N N 66 ARG H H N N 67 ARG H2 H N N 68 ARG HA H N N 69 ARG HB2 H N N 70 ARG HB3 H N N 71 ARG HG2 H N N 72 ARG HG3 H N N 73 ARG HD2 H N N 74 ARG HD3 H N N 75 ARG HE H N N 76 ARG HH11 H N N 77 ARG HH12 H N N 78 ARG HH21 H N N 79 ARG HH22 H N N 80 ARG HXT H N N 81 ASN N N N N 82 ASN CA C N S 83 ASN C C N N 84 ASN O O N N 85 ASN CB C N N 86 ASN CG C N N 87 ASN OD1 O N N 88 ASN ND2 N N N 89 ASN OXT O N N 90 ASN H H N N 91 ASN H2 H N N 92 ASN HA H N N 93 ASN HB2 H N N 94 ASN HB3 H N N 95 ASN HD21 H N N 96 ASN HD22 H N N 97 ASN HXT H N N 98 ASP N N N N 99 ASP CA C N S 100 ASP C C N N 101 ASP O O N N 102 ASP CB C N N 103 ASP CG C N N 104 ASP OD1 O N N 105 ASP OD2 O N N 106 ASP OXT O N N 107 ASP H H N N 108 ASP H2 H N N 109 ASP HA H N N 110 ASP HB2 H N N 111 ASP HB3 H N N 112 ASP HD2 H N N 113 ASP HXT H N N 114 CYS N N N N 115 CYS CA C N R 116 CYS C C N N 117 CYS O O N N 118 CYS CB C N N 119 CYS SG S N N 120 CYS OXT O N N 121 CYS H H N N 122 CYS H2 H N N 123 CYS HA H N N 124 CYS HB2 H N N 125 CYS HB3 H N N 126 CYS HG H N N 127 CYS HXT H N N 128 GLN N N N N 129 GLN CA C N S 130 GLN C C N N 131 GLN O O N N 132 GLN CB C N N 133 GLN CG C N N 134 GLN CD C N N 135 GLN OE1 O N N 136 GLN NE2 N N N 137 GLN OXT O N N 138 GLN H H N N 139 GLN H2 H N N 140 GLN HA H N N 141 GLN HB2 H N N 142 GLN HB3 H N N 143 GLN HG2 H N N 144 GLN HG3 H N N 145 GLN HE21 H N N 146 GLN HE22 H N N 147 GLN HXT H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 GLY N N N N 168 GLY CA C N N 169 GLY C C N N 170 GLY O O N N 171 GLY OXT O N N 172 GLY H H N N 173 GLY H2 H N N 174 GLY HA2 H N N 175 GLY HA3 H N N 176 GLY HXT H N N 177 HIS N N N N 178 HIS CA C N S 179 HIS C C N N 180 HIS O O N N 181 HIS CB C N N 182 HIS CG C Y N 183 HIS ND1 N Y N 184 HIS CD2 C Y N 185 HIS CE1 C Y N 186 HIS NE2 N Y N 187 HIS OXT O N N 188 HIS H H N N 189 HIS H2 H N N 190 HIS HA H N N 191 HIS HB2 H N N 192 HIS HB3 H N N 193 HIS HD1 H N N 194 HIS HD2 H N N 195 HIS HE1 H N N 196 HIS HE2 H N N 197 HIS HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MET N N N N 271 MET CA C N S 272 MET C C N N 273 MET O O N N 274 MET CB C N N 275 MET CG C N N 276 MET SD S N N 277 MET CE C N N 278 MET OXT O N N 279 MET H H N N 280 MET H2 H N N 281 MET HA H N N 282 MET HB2 H N N 283 MET HB3 H N N 284 MET HG2 H N N 285 MET HG3 H N N 286 MET HE1 H N N 287 MET HE2 H N N 288 MET HE3 H N N 289 MET HXT H N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4D9 C6 C1 doub Y N 1 4D9 C2 C1 sing Y N 2 4D9 C1 H1 sing N N 3 4D9 C3 C2 doub Y N 4 4D9 C2 H2 sing N N 5 4D9 C4 C3 sing Y N 6 4D9 C3 H3 sing N N 7 4D9 C4 C7 doub Y N 8 4D9 C4 H4 sing N N 9 4D9 C9 N5 sing Y N 10 4D9 N5 C6 sing Y N 11 4D9 C7 C6 sing Y N 12 4D9 N8 C7 sing Y N 13 4D9 N8 C9 doub Y N 14 4D9 C10 C9 sing N N 15 4D9 C11 C10 sing N N 16 4D9 C10 H10 sing N N 17 4D9 C10 H10A sing N N 18 4D9 N13 C11 sing N N 19 4D9 C12 C11 sing N N 20 4D9 C11 H11 sing N N 21 4D9 O14 C12 doub N N 22 4D9 C12 O15 sing N N 23 4D9 C16 N13 sing N N 24 4D9 N13 HN13 sing N N 25 4D9 O15 HO15 sing N N 26 4D9 C17 C16 sing N N 27 4D9 C16 O18 doub N N 28 4D9 C19 C17 doub Y N 29 4D9 S20 C17 sing Y N 30 4D9 C22 C19 sing Y N 31 4D9 C19 H19 sing N N 32 4D9 C21 S20 sing Y N 33 4D9 C26 C21 doub Y N 34 4D9 C22 C21 sing Y N 35 4D9 C23 C22 doub Y N 36 4D9 C24 C23 sing Y N 37 4D9 C23 H23 sing N N 38 4D9 C24 C25 doub Y N 39 4D9 C24 H24 sing N N 40 4D9 C25 C26 sing Y N 41 4D9 C25 H25 sing N N 42 4D9 C26 H26 sing N N 43 4D9 N5 HN5 sing N N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-(1H-benzimidazol-2-yl)-N-(1-benzothiophen-2-ylcarbonyl)-D-alanine' 4D9 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PIN _pdbx_initial_refinement_model.details 'PDB ENTRY 1PIN' #