HEADER TRANSFERASE 26-OCT-09 3KEW TITLE CRYSTAL STRUCTURE OF PROBABLE ALANYL-TRNA-SYNTHASE FROM CLOSTRIDIUM TITLE 2 PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHHA1 DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT, RESIDUES 1-231; COMPND 5 SYNONYM: ALANYL-TRNA-SYNTHASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 STRAIN: ATCC 13124; SOURCE 5 GENE: ALAS, CPF_0714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PSI-2, TRNA SYNTHASE, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,M.GILMORE,S.MILLER,J.M.SAUDER,S.C.ALMO, AUTHOR 2 S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 5 21-FEB-24 3KEW 1 REMARK REVDAT 4 10-FEB-21 3KEW 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 21-NOV-18 3KEW 1 AUTHOR REVDAT 2 13-JUL-11 3KEW 1 VERSN REVDAT 1 03-NOV-09 3KEW 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,M.GILMORE,S.MILLER,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ALANYL-TRNA-SYNTHASE FROM CLOSTRIDIUM JRNL TITL 2 PERFRINGENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 38950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.79000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3832 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5146 ; 1.268 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;36.715 ;24.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 751 ;16.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2871 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1481 ; 0.140 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2510 ; 0.300 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.155 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.139 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.152 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2360 ; 3.351 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3664 ; 4.772 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 5.487 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1476 ; 7.556 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1835 ; 0.44 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1835 ; 4.08 ; 4.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.5, 25% PEG4000, REMARK 280 200MM AMMONIUM ACETATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.92450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.22050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.96100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.22050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.92450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.96100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 SER A 231 REMARK 465 GLU A 232 REMARK 465 GLY A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 THR B 176 REMARK 465 ASP B 177 REMARK 465 SER B 231 REMARK 465 GLU B 232 REMARK 465 GLY B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 84.29 23.56 REMARK 500 LYS A 75 -75.67 -107.54 REMARK 500 GLN A 205 -66.98 71.22 REMARK 500 LYS A 216 -113.01 48.10 REMARK 500 LYS B 75 -60.80 -101.94 REMARK 500 LEU B 188 -58.77 -131.11 REMARK 500 GLN B 205 -64.12 65.80 REMARK 500 LYS B 216 -115.89 58.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 240 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 100 NE2 95.8 REMARK 620 3 CYS A 193 SG 85.4 98.0 REMARK 620 4 HOH A 290 O 171.0 93.1 94.6 REMARK 620 5 HOH A 291 O 101.8 83.4 172.6 78.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 240 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 100 NE2 REMARK 620 2 CYS B 193 SG 95.0 REMARK 620 3 HOH B 295 O 168.3 96.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13658A RELATED DB: TARGETDB DBREF 3KEW A 2 231 UNP Q0TT74 Q0TT74_CLOP1 2 231 DBREF 3KEW B 2 231 UNP Q0TT74 Q0TT74_CLOP1 2 231 SEQADV 3KEW MET A -1 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW SER A 0 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW LEU A 1 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW GLU A 232 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW GLY A 233 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 234 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 235 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 236 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 237 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 238 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS A 239 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW MET B -1 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW SER B 0 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW LEU B 1 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW GLU B 232 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW GLY B 233 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 234 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 235 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 236 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 237 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 238 UNP Q0TT74 EXPRESSION TAG SEQADV 3KEW HIS B 239 UNP Q0TT74 EXPRESSION TAG SEQRES 1 A 241 MET SER LEU THR LYS LEU TYR TYR GLU ASP GLN TYR ILE SEQRES 2 A 241 LYS GLU PHE LYS GLY GLU ILE ILE GLU VAL LYS GLU ILE SEQRES 3 A 241 ASP GLY LYS PHE HIS VAL LEU LEU ASP GLN THR ALA PHE SEQRES 4 A 241 PHE PRO GLY GLY GLY GLY GLN MET GLY ASP LEU GLY LEU SEQRES 5 A 241 ILE ASP GLY ILE LYS VAL LEU ASP VAL TYR GLU GLU GLU SEQRES 6 A 241 GLY LYS VAL TYR HIS VAL LEU GLU LYS GLU PRO LYS LYS SEQRES 7 A 241 LEU LYS ASN LEU GLN CYS GLU LEU ASP TRP GLU ARG ARG SEQRES 8 A 241 PHE ASP GLY MET GLN GLN HIS LEU GLY GLN HIS LEU LEU SEQRES 9 A 241 SER GLY CYS PHE TYR ASP LEU PHE GLY ALA ASN THR CYS SEQRES 10 A 241 GLY PHE HIS LEU GLY LYS GLU ILE SER THR VAL ASP ILE SEQRES 11 A 241 VAL GLY PHE LEU ASP GLU LYS THR ILE ARG GLU ALA GLU SEQRES 12 A 241 LYS GLU ALA ASN ARG LEU ILE PHE GLU ASN LEU GLU VAL SEQRES 13 A 241 LYS SER TYR ALA PRO SER LYS LYS GLU LEU LYS LYS VAL SEQRES 14 A 241 LYS THR ARG ARG ALA LEU PRO LYS THR ASP GLU GLU ILE SEQRES 15 A 241 ARG ILE VAL GLU ILE VAL GLY LEU ASP LEU ASN ALA CYS SEQRES 16 A 241 CYS GLY VAL HIS PRO ARG ASN THR ARG ASP LEU GLN VAL SEQRES 17 A 241 ILE LYS ILE ARG ARG TRP GLU LYS HIS LYS ASN ALA THR SEQRES 18 A 241 ARG ILE GLU TYR VAL ALA GLY ASN ARG ALA VAL SER GLU SEQRES 19 A 241 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 241 MET SER LEU THR LYS LEU TYR TYR GLU ASP GLN TYR ILE SEQRES 2 B 241 LYS GLU PHE LYS GLY GLU ILE ILE GLU VAL LYS GLU ILE SEQRES 3 B 241 ASP GLY LYS PHE HIS VAL LEU LEU ASP GLN THR ALA PHE SEQRES 4 B 241 PHE PRO GLY GLY GLY GLY GLN MET GLY ASP LEU GLY LEU SEQRES 5 B 241 ILE ASP GLY ILE LYS VAL LEU ASP VAL TYR GLU GLU GLU SEQRES 6 B 241 GLY LYS VAL TYR HIS VAL LEU GLU LYS GLU PRO LYS LYS SEQRES 7 B 241 LEU LYS ASN LEU GLN CYS GLU LEU ASP TRP GLU ARG ARG SEQRES 8 B 241 PHE ASP GLY MET GLN GLN HIS LEU GLY GLN HIS LEU LEU SEQRES 9 B 241 SER GLY CYS PHE TYR ASP LEU PHE GLY ALA ASN THR CYS SEQRES 10 B 241 GLY PHE HIS LEU GLY LYS GLU ILE SER THR VAL ASP ILE SEQRES 11 B 241 VAL GLY PHE LEU ASP GLU LYS THR ILE ARG GLU ALA GLU SEQRES 12 B 241 LYS GLU ALA ASN ARG LEU ILE PHE GLU ASN LEU GLU VAL SEQRES 13 B 241 LYS SER TYR ALA PRO SER LYS LYS GLU LEU LYS LYS VAL SEQRES 14 B 241 LYS THR ARG ARG ALA LEU PRO LYS THR ASP GLU GLU ILE SEQRES 15 B 241 ARG ILE VAL GLU ILE VAL GLY LEU ASP LEU ASN ALA CYS SEQRES 16 B 241 CYS GLY VAL HIS PRO ARG ASN THR ARG ASP LEU GLN VAL SEQRES 17 B 241 ILE LYS ILE ARG ARG TRP GLU LYS HIS LYS ASN ALA THR SEQRES 18 B 241 ARG ILE GLU TYR VAL ALA GLY ASN ARG ALA VAL SER GLU SEQRES 19 B 241 GLY HIS HIS HIS HIS HIS HIS HET ZN A 240 1 HET ZN B 240 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *156(H2 O) HELIX 1 1 TYR A 5 GLU A 7 5 3 HELIX 2 2 ASP A 85 GLY A 111 1 27 HELIX 3 3 ASP A 133 ASN A 151 1 19 HELIX 4 4 THR A 201 GLN A 205 5 5 HELIX 5 5 ASN A 227 VAL A 230 5 4 HELIX 6 6 LEU B 4 ASP B 8 1 5 HELIX 7 7 ASP B 85 GLY B 111 1 27 HELIX 8 8 ASP B 133 GLU B 150 1 18 HELIX 9 9 LYS B 162 VAL B 167 5 6 HELIX 10 10 THR B 201 GLN B 205 5 5 HELIX 11 11 ASN B 227 VAL B 230 5 4 SHEET 1 A 2 THR A 2 LYS A 3 0 SHEET 2 A 2 GLN A 34 THR A 35 1 O THR A 35 N THR A 2 SHEET 1 B 7 GLU A 13 GLY A 16 0 SHEET 2 B 7 LEU A 80 LEU A 84 -1 O CYS A 82 N PHE A 14 SHEET 3 B 7 GLY A 49 ILE A 51 -1 N LEU A 50 O GLU A 83 SHEET 4 B 7 ILE A 54 GLU A 62 -1 O VAL A 56 N GLY A 49 SHEET 5 B 7 LYS A 65 LEU A 70 -1 O TYR A 67 N TYR A 60 SHEET 6 B 7 LYS A 27 LEU A 32 -1 N VAL A 30 O HIS A 68 SHEET 7 B 7 ILE A 18 ILE A 24 -1 N LYS A 22 O HIS A 29 SHEET 1 C 4 THR A 114 LEU A 119 0 SHEET 2 C 4 SER A 124 VAL A 129 -1 O THR A 125 N HIS A 118 SHEET 3 C 4 ALA A 218 ALA A 225 -1 O ILE A 221 N VAL A 126 SHEET 4 C 4 ILE A 207 HIS A 215 -1 N HIS A 215 O ALA A 218 SHEET 1 D 3 VAL A 154 TYR A 157 0 SHEET 2 D 3 ILE A 182 ILE A 185 -1 O ILE A 182 N TYR A 157 SHEET 3 D 3 ASP A 189 ALA A 192 -1 O ASN A 191 N VAL A 183 SHEET 1 E 2 THR B 2 LYS B 3 0 SHEET 2 E 2 GLN B 34 THR B 35 1 O THR B 35 N THR B 2 SHEET 1 F 7 GLU B 13 GLY B 16 0 SHEET 2 F 7 LEU B 80 LEU B 84 -1 O LEU B 80 N GLY B 16 SHEET 3 F 7 GLY B 49 ILE B 51 -1 N LEU B 50 O GLU B 83 SHEET 4 F 7 ILE B 54 GLU B 62 -1 O VAL B 56 N GLY B 49 SHEET 5 F 7 LYS B 65 LEU B 70 -1 O VAL B 69 N LEU B 57 SHEET 6 F 7 LYS B 27 LEU B 32 -1 N VAL B 30 O HIS B 68 SHEET 7 F 7 ILE B 18 ILE B 24 -1 N ILE B 19 O LEU B 31 SHEET 1 G 4 THR B 114 LEU B 119 0 SHEET 2 G 4 SER B 124 VAL B 129 -1 O ASP B 127 N GLY B 116 SHEET 3 G 4 ALA B 218 ALA B 225 -1 O THR B 219 N ILE B 128 SHEET 4 G 4 ILE B 207 HIS B 215 -1 N GLU B 213 O ARG B 220 SHEET 1 H 3 VAL B 154 TYR B 157 0 SHEET 2 H 3 ILE B 182 ILE B 185 -1 O ILE B 182 N TYR B 157 SHEET 3 H 3 ASP B 189 ALA B 192 -1 O ASN B 191 N VAL B 183 LINK NE2 HIS A 96 ZN ZN A 240 1555 1555 2.33 LINK NE2 HIS A 100 ZN ZN A 240 1555 1555 2.29 LINK SG CYS A 193 ZN ZN A 240 1555 1555 2.57 LINK ZN ZN A 240 O HOH A 290 1555 1555 2.24 LINK ZN ZN A 240 O HOH A 291 1555 1555 2.32 LINK NE2 HIS B 100 ZN ZN B 240 1555 1555 2.33 LINK SG CYS B 193 ZN ZN B 240 1555 1555 2.53 LINK ZN ZN B 240 O HOH B 295 1555 1555 2.37 SITE 1 AC1 6 HIS A 96 HIS A 100 CYS A 193 HOH A 249 SITE 2 AC1 6 HOH A 290 HOH A 291 SITE 1 AC2 6 HIS B 96 HIS B 100 CYS B 193 HOH B 291 SITE 2 AC2 6 HOH B 295 HOH B 329 CRYST1 57.849 57.922 178.441 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005604 0.00000