data_3KLB # _entry.id 3KLB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KLB pdb_00003klb 10.2210/pdb3klb/pdb RCSB RCSB056134 ? ? WWPDB D_1000056134 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 388560 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KLB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Putative Flavoprotein in Complex with FMN (YP_213683.1) from Bacteroides fragilis NCTC 9343 at 1.75 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KLB _cell.length_a 96.764 _cell.length_b 96.764 _cell.length_c 47.882 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KLB _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative Flavoprotein' 18298.600 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 10 ? ? ? ? 6 water nat water 18.015 175 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NDRKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVE(MSE)RDALSRPAISGT LFHPEKYEVLFVGFPVWWYIAPTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWKDGKLLNGQITRDL VTEWFEKIRL ; _entity_poly.pdbx_seq_one_letter_code_can ;GMNDRKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYE VLFVGFPVWWYIAPTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWKDGKLLNGQITRDLVTEWFEKI RL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 388560 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 ASP n 1 5 ARG n 1 6 LYS n 1 7 ILE n 1 8 LEU n 1 9 VAL n 1 10 ALA n 1 11 TYR n 1 12 PHE n 1 13 SER n 1 14 CYS n 1 15 SER n 1 16 GLY n 1 17 VAL n 1 18 THR n 1 19 LYS n 1 20 ALA n 1 21 VAL n 1 22 ALA n 1 23 GLU n 1 24 LYS n 1 25 LEU n 1 26 ALA n 1 27 ALA n 1 28 ILE n 1 29 THR n 1 30 GLY n 1 31 ALA n 1 32 ASP n 1 33 LEU n 1 34 TYR n 1 35 GLU n 1 36 ILE n 1 37 LYS n 1 38 PRO n 1 39 GLU n 1 40 VAL n 1 41 PRO n 1 42 TYR n 1 43 THR n 1 44 GLU n 1 45 ALA n 1 46 ASP n 1 47 LEU n 1 48 ASP n 1 49 TRP n 1 50 ASN n 1 51 ASP n 1 52 LYS n 1 53 LYS n 1 54 SER n 1 55 ARG n 1 56 SER n 1 57 SER n 1 58 VAL n 1 59 GLU n 1 60 MSE n 1 61 ARG n 1 62 ASP n 1 63 ALA n 1 64 LEU n 1 65 SER n 1 66 ARG n 1 67 PRO n 1 68 ALA n 1 69 ILE n 1 70 SER n 1 71 GLY n 1 72 THR n 1 73 LEU n 1 74 PHE n 1 75 HIS n 1 76 PRO n 1 77 GLU n 1 78 LYS n 1 79 TYR n 1 80 GLU n 1 81 VAL n 1 82 LEU n 1 83 PHE n 1 84 VAL n 1 85 GLY n 1 86 PHE n 1 87 PRO n 1 88 VAL n 1 89 TRP n 1 90 TRP n 1 91 TYR n 1 92 ILE n 1 93 ALA n 1 94 PRO n 1 95 THR n 1 96 ILE n 1 97 ILE n 1 98 ASN n 1 99 THR n 1 100 PHE n 1 101 LEU n 1 102 GLU n 1 103 SER n 1 104 TYR n 1 105 ASP n 1 106 PHE n 1 107 ALA n 1 108 GLY n 1 109 LYS n 1 110 ILE n 1 111 VAL n 1 112 VAL n 1 113 PRO n 1 114 PHE n 1 115 ALA n 1 116 THR n 1 117 SER n 1 118 GLY n 1 119 GLY n 1 120 SER n 1 121 GLY n 1 122 ILE n 1 123 GLY n 1 124 ASN n 1 125 CYS n 1 126 GLU n 1 127 LYS n 1 128 ASN n 1 129 LEU n 1 130 HIS n 1 131 LYS n 1 132 ALA n 1 133 TYR n 1 134 PRO n 1 135 ASP n 1 136 ILE n 1 137 VAL n 1 138 TRP n 1 139 LYS n 1 140 ASP n 1 141 GLY n 1 142 LYS n 1 143 LEU n 1 144 LEU n 1 145 ASN n 1 146 GLY n 1 147 GLN n 1 148 ILE n 1 149 THR n 1 150 ARG n 1 151 ASP n 1 152 LEU n 1 153 VAL n 1 154 THR n 1 155 GLU n 1 156 TRP n 1 157 PHE n 1 158 GLU n 1 159 LYS n 1 160 ILE n 1 161 ARG n 1 162 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF4115 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25285 / NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis NCTC 9343' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5L808_BACFN _struct_ref.pdbx_db_accession Q5L808 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNDRKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEV LFVGFPVWWYIAPTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWKDGKLLNGQITRDLVTEWFEKIR L ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KLB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5L808 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 161 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3KLB _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5L808 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KLB # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;10.0000% Glycerol, 1.2600M sodium citrate, 0.1M HEPES pH 7.5, Additive: 0.001 M FMN, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-05-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97939 1.0 3 0.97927 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97939,0.97927 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KLB _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 27.832 _reflns.number_obs 23388 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 17.330 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 22.346 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.75 1.81 14799 ? 3959 0.732 1.9 ? ? ? ? ? 94.20 1 1 1.81 1.89 18269 ? 4815 0.517 2.7 ? ? ? ? ? 99.70 2 1 1.89 1.97 15497 ? 4069 0.352 3.9 ? ? ? ? ? 99.70 3 1 1.97 2.07 16181 ? 4237 0.239 5.8 ? ? ? ? ? 99.90 4 1 2.07 2.20 16864 ? 4403 0.166 8.4 ? ? ? ? ? 99.70 5 1 2.20 2.37 16811 ? 4384 0.119 11.3 ? ? ? ? ? 99.60 6 1 2.37 2.61 17081 ? 4430 0.093 14.5 ? ? ? ? ? 99.80 7 1 2.61 2.99 17121 ? 4430 0.059 21.7 ? ? ? ? ? 99.80 8 1 2.99 3.76 16860 ? 4355 0.026 41.6 ? ? ? ? ? 99.70 9 1 3.76 27.832 17114 ? 4420 0.019 59.9 ? ? ? ? ? 99.40 10 1 # _refine.entry_id 3KLB _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 27.832 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.760 _refine.ls_number_reflns_obs 23346 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. (3). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (4). A MODIFIED FMN RESTRAINTS DICTIONARY WAS USED DURING THE REFINEMENT TO ALLOW BENDING OF THE FMN RING ALONG THE N5-N10 VIRTUAL AXIS. THIS RESULTS IN AN IMPROVED FIT BETWEEN THE FMN COORDINATE MODEL AND ELECTRON DENSITY. (5). SODIUM ION (NA) AND GLYCEROL (GOL) MOLECULES FROM CRYSTALLIZATION, AND ETHYLENE GLYCOL (EDO) MOLECULES FROM CRYO CONDITION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.150 _refine.ls_R_factor_R_work 0.148 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.179 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1196 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.843 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.940 _refine.aniso_B[2][2] -0.940 _refine.aniso_B[3][3] 1.880 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.085 _refine.pdbx_overall_ESU_R_Free 0.087 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 3.281 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 75.13 _refine.B_iso_min 15.54 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1258 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 1517 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 27.832 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1483 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1016 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2015 1.548 1.998 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2474 0.961 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 185 6.067 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 58 34.974 23.793 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 228 12.388 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 7 14.835 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 214 0.101 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1652 0.009 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 302 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 281 0.217 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1037 0.201 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 738 0.186 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 739 0.083 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 136 0.164 0.200 ? ? r_metal_ion_refined 'X-RAY DIFFRACTION' 2 0.086 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 8 0.317 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 43 0.191 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 12 0.114 0.200 ? ? r_symmetry_metal_ion_refined 'X-RAY DIFFRACTION' 2 0.086 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 878 1.722 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 351 0.534 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1432 2.803 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 642 4.327 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 583 5.997 11.000 ? ? # _refine_ls_shell.d_res_high 1.752 _refine_ls_shell.d_res_low 1.798 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.990 _refine_ls_shell.number_reflns_R_work 1597 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1674 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KLB _struct.title ;Crystal structure of Putative Flavoprotein in Complex with FMN (YP_213683.1) from Bacteroides fragilis NCTC 9343 at 1.75 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative Flavoprotein in Complex with FMN, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, FLAVOPROTEIN ; _struct_keywords.pdbx_keywords FLAVOPROTEIN _struct_keywords.entry_id 3KLB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ARG A 5 ? GLY A 0 ARG A 4 5 ? 5 HELX_P HELX_P2 2 GLY A 16 ? GLY A 30 ? GLY A 15 GLY A 29 1 ? 15 HELX_P HELX_P3 3 GLU A 44 ? ASP A 48 ? GLU A 43 ASP A 47 5 ? 5 HELX_P HELX_P4 4 SER A 54 ? ARG A 61 ? SER A 53 ARG A 60 1 ? 8 HELX_P HELX_P5 5 HIS A 75 ? TYR A 79 ? HIS A 74 TYR A 78 5 ? 5 HELX_P HELX_P6 6 PRO A 94 ? SER A 103 ? PRO A 93 SER A 102 1 ? 10 HELX_P HELX_P7 7 ILE A 122 ? TYR A 133 ? ILE A 121 TYR A 132 1 ? 12 HELX_P HELX_P8 8 THR A 149 ? ILE A 160 ? THR A 148 ILE A 159 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ASN 3 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A GLU 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLU 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A MSE 60 C ? ? ? 1_555 A ARG 61 N A ? A MSE 59 A ARG 60 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A MSE 60 C ? ? ? 1_555 A ARG 61 N B ? A MSE 59 A ARG 60 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A PRO 134 O ? ? ? 1_555 C NA . NA ? ? A PRO 133 A NA 163 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc2 metalc ? ? A PRO 134 O ? ? ? 1_555 C NA . NA ? ? A PRO 133 A NA 163 7_556 ? ? ? ? ? ? ? 2.320 ? ? metalc3 metalc ? ? A ILE 136 O ? ? ? 1_555 C NA . NA ? ? A ILE 135 A NA 163 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc4 metalc ? ? A ILE 136 O ? ? ? 1_555 C NA . NA ? ? A ILE 135 A NA 163 7_556 ? ? ? ? ? ? ? 2.328 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 163 A HOH 195 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 163 A HOH 195 7_556 ? ? ? ? ? ? ? 2.871 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 32 ? GLU A 35 ? ASP A 31 GLU A 34 A 2 ILE A 7 ? TYR A 11 ? ILE A 6 TYR A 10 A 3 VAL A 81 ? PRO A 87 ? VAL A 80 PRO A 86 A 4 ILE A 110 ? THR A 116 ? ILE A 109 THR A 115 A 5 VAL A 137 ? TRP A 138 ? VAL A 136 TRP A 137 B 1 ASP A 32 ? GLU A 35 ? ASP A 31 GLU A 34 B 2 ILE A 7 ? TYR A 11 ? ILE A 6 TYR A 10 B 3 VAL A 81 ? PRO A 87 ? VAL A 80 PRO A 86 B 4 ILE A 110 ? THR A 116 ? ILE A 109 THR A 115 B 5 LYS A 142 ? LEU A 143 ? LYS A 141 LEU A 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 32 ? O ASP A 31 N VAL A 9 ? N VAL A 8 A 2 3 N ALA A 10 ? N ALA A 9 O PHE A 83 ? O PHE A 82 A 3 4 N LEU A 82 ? N LEU A 81 O VAL A 112 ? O VAL A 111 A 4 5 N VAL A 111 ? N VAL A 110 O VAL A 137 ? O VAL A 136 B 1 2 O ASP A 32 ? O ASP A 31 N VAL A 9 ? N VAL A 8 B 2 3 N ALA A 10 ? N ALA A 9 O PHE A 83 ? O PHE A 82 B 3 4 N LEU A 82 ? N LEU A 81 O VAL A 112 ? O VAL A 111 B 4 5 N ALA A 115 ? N ALA A 114 O LYS A 142 ? O LYS A 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 162 ? 24 'BINDING SITE FOR RESIDUE FMN A 162' AC2 Software A NA 163 ? 6 'BINDING SITE FOR RESIDUE NA A 163' AC3 Software A GOL 164 ? 5 'BINDING SITE FOR RESIDUE GOL A 164' AC4 Software A GOL 165 ? 5 'BINDING SITE FOR RESIDUE GOL A 165' AC5 Software A EDO 166 ? 7 'BINDING SITE FOR RESIDUE EDO A 166' AC6 Software A EDO 167 ? 2 'BINDING SITE FOR RESIDUE EDO A 167' AC7 Software A EDO 168 ? 3 'BINDING SITE FOR RESIDUE EDO A 168' AC8 Software A EDO 169 ? 7 'BINDING SITE FOR RESIDUE EDO A 169' AC9 Software A EDO 170 ? 9 'BINDING SITE FOR RESIDUE EDO A 170' BC1 Software A EDO 171 ? 3 'BINDING SITE FOR RESIDUE EDO A 171' BC2 Software A EDO 172 ? 4 'BINDING SITE FOR RESIDUE EDO A 172' BC3 Software A EDO 173 ? 3 'BINDING SITE FOR RESIDUE EDO A 173' BC4 Software A EDO 174 ? 5 'BINDING SITE FOR RESIDUE EDO A 174' BC5 Software A EDO 175 ? 6 'BINDING SITE FOR RESIDUE EDO A 175' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 SER A 13 ? SER A 12 . ? 1_555 ? 2 AC1 24 CYS A 14 ? CYS A 13 . ? 1_555 ? 3 AC1 24 SER A 15 ? SER A 14 . ? 1_555 ? 4 AC1 24 GLY A 16 ? GLY A 15 . ? 1_555 ? 5 AC1 24 VAL A 17 ? VAL A 16 . ? 1_555 ? 6 AC1 24 THR A 18 ? THR A 17 . ? 1_555 ? 7 AC1 24 TRP A 49 ? TRP A 48 . ? 1_555 ? 8 AC1 24 SER A 56 ? SER A 55 . ? 1_555 ? 9 AC1 24 PHE A 74 ? PHE A 73 . ? 3_544 ? 10 AC1 24 PRO A 87 ? PRO A 86 . ? 1_555 ? 11 AC1 24 VAL A 88 ? VAL A 87 . ? 1_555 ? 12 AC1 24 TRP A 89 ? TRP A 88 . ? 1_555 ? 13 AC1 24 TRP A 90 ? TRP A 89 . ? 1_555 ? 14 AC1 24 TYR A 91 ? TYR A 90 . ? 1_555 ? 15 AC1 24 THR A 116 ? THR A 115 . ? 1_555 ? 16 AC1 24 SER A 117 ? SER A 116 . ? 1_555 ? 17 AC1 24 GLY A 118 ? GLY A 117 . ? 1_555 ? 18 AC1 24 GLY A 119 ? GLY A 118 . ? 1_555 ? 19 AC1 24 SER A 120 ? SER A 119 . ? 1_555 ? 20 AC1 24 HOH P . ? HOH A 190 . ? 1_555 ? 21 AC1 24 HOH P . ? HOH A 206 . ? 1_555 ? 22 AC1 24 HOH P . ? HOH A 236 . ? 1_555 ? 23 AC1 24 HOH P . ? HOH A 309 . ? 1_555 ? 24 AC1 24 HOH P . ? HOH A 344 . ? 1_555 ? 25 AC2 6 PRO A 134 ? PRO A 133 . ? 7_556 ? 26 AC2 6 PRO A 134 ? PRO A 133 . ? 1_555 ? 27 AC2 6 ILE A 136 ? ILE A 135 . ? 1_555 ? 28 AC2 6 ILE A 136 ? ILE A 135 . ? 7_556 ? 29 AC2 6 HOH P . ? HOH A 195 . ? 7_556 ? 30 AC2 6 HOH P . ? HOH A 195 . ? 1_555 ? 31 AC3 5 SER A 57 ? SER A 56 . ? 1_555 ? 32 AC3 5 ARG A 61 ? ARG A 60 . ? 1_555 ? 33 AC3 5 TRP A 90 ? TRP A 89 . ? 1_555 ? 34 AC3 5 HOH P . ? HOH A 256 . ? 1_555 ? 35 AC3 5 HOH P . ? HOH A 322 . ? 1_555 ? 36 AC4 5 PRO A 76 ? PRO A 75 . ? 1_555 ? 37 AC4 5 GLU A 77 ? GLU A 76 . ? 1_555 ? 38 AC4 5 TYR A 104 ? TYR A 103 . ? 1_555 ? 39 AC4 5 ASP A 105 ? ASP A 104 . ? 1_555 ? 40 AC4 5 LYS A 109 ? LYS A 108 . ? 1_555 ? 41 AC5 7 ARG A 5 ? ARG A 4 . ? 1_555 ? 42 AC5 7 LYS A 6 ? LYS A 5 . ? 1_555 ? 43 AC5 7 ILE A 7 ? ILE A 6 . ? 1_555 ? 44 AC5 7 GLY A 30 ? GLY A 29 . ? 1_555 ? 45 AC5 7 ASP A 32 ? ASP A 31 . ? 1_555 ? 46 AC5 7 TYR A 79 ? TYR A 78 . ? 1_555 ? 47 AC5 7 HOH P . ? HOH A 345 . ? 1_555 ? 48 AC6 2 PHE A 74 ? PHE A 73 . ? 1_555 ? 49 AC6 2 HOH P . ? HOH A 319 . ? 1_555 ? 50 AC7 3 LYS A 131 ? LYS A 130 . ? 7_556 ? 51 AC7 3 ALA A 132 ? ALA A 131 . ? 7_556 ? 52 AC7 3 ASP A 140 ? ASP A 139 . ? 1_555 ? 53 AC8 7 ALA A 107 ? ALA A 106 . ? 7_556 ? 54 AC8 7 GLY A 108 ? GLY A 107 . ? 1_555 ? 55 AC8 7 GLY A 108 ? GLY A 107 . ? 7_556 ? 56 AC8 7 ILE A 110 ? ILE A 109 . ? 1_555 ? 57 AC8 7 VAL A 137 ? VAL A 136 . ? 1_555 ? 58 AC8 7 LYS A 139 ? LYS A 138 . ? 1_555 ? 59 AC8 7 HOH P . ? HOH A 349 . ? 1_555 ? 60 AC9 9 LEU A 143 ? LEU A 142 . ? 1_555 ? 61 AC9 9 LEU A 144 ? LEU A 143 . ? 1_555 ? 62 AC9 9 ASN A 145 ? ASN A 144 . ? 1_555 ? 63 AC9 9 GLY A 146 ? GLY A 145 . ? 1_555 ? 64 AC9 9 GLN A 147 ? GLN A 146 . ? 1_555 ? 65 AC9 9 LEU A 152 ? LEU A 151 . ? 1_555 ? 66 AC9 9 HOH P . ? HOH A 194 . ? 3_544 ? 67 AC9 9 HOH P . ? HOH A 210 . ? 3_544 ? 68 AC9 9 HOH P . ? HOH A 249 . ? 3_544 ? 69 BC1 3 CYS A 14 ? CYS A 13 . ? 1_555 ? 70 BC1 3 TYR A 42 ? TYR A 41 . ? 1_555 ? 71 BC1 3 GLU A 44 ? GLU A 43 . ? 1_555 ? 72 BC2 4 ALA A 27 ? ALA A 26 . ? 3_544 ? 73 BC2 4 GLN A 147 ? GLN A 146 . ? 1_555 ? 74 BC2 4 THR A 149 ? THR A 148 . ? 1_555 ? 75 BC2 4 HOH P . ? HOH A 274 . ? 3_544 ? 76 BC3 3 ILE A 148 ? ILE A 147 . ? 1_555 ? 77 BC3 3 HOH P . ? HOH A 218 . ? 1_555 ? 78 BC3 3 HOH P . ? HOH A 226 . ? 1_555 ? 79 BC4 5 MSE A 60 ? MSE A 59 . ? 1_555 ? 80 BC4 5 ARG A 61 ? ARG A 60 . ? 1_555 ? 81 BC4 5 ALA A 63 ? ALA A 62 . ? 1_555 ? 82 BC4 5 HOH P . ? HOH A 321 . ? 1_555 ? 83 BC4 5 HOH P . ? HOH A 340 . ? 1_555 ? 84 BC5 6 LEU A 101 ? LEU A 100 . ? 1_555 ? 85 BC5 6 TYR A 104 ? TYR A 103 . ? 1_555 ? 86 BC5 6 PHE A 106 ? PHE A 105 . ? 1_555 ? 87 BC5 6 TYR A 133 ? TYR A 132 . ? 1_555 ? 88 BC5 6 ASP A 135 ? ASP A 134 . ? 1_555 ? 89 BC5 6 HOH P . ? HOH A 301 . ? 1_555 ? # _atom_sites.entry_id 3KLB _atom_sites.fract_transf_matrix[1][1] 0.010334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010334 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020885 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 ARG 5 4 4 ARG ARG A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 CYS 14 13 13 CYS CYS A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ASP 32 31 31 ASP ASP A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 MSE 60 59 59 MSE MSE A . n A 1 61 ARG 61 60 60 ARG ARG A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 SER 65 64 64 SER SER A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 PRO 67 66 66 PRO PRO A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 SER 70 69 69 SER SER A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 HIS 75 74 74 HIS HIS A . n A 1 76 PRO 76 75 75 PRO PRO A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 LYS 78 77 77 LYS LYS A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 GLY 85 84 84 GLY GLY A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 TRP 89 88 88 TRP TRP A . n A 1 90 TRP 90 89 89 TRP TRP A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 PRO 94 93 93 PRO PRO A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 THR 99 98 98 THR THR A . n A 1 100 PHE 100 99 99 PHE PHE A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 TYR 104 103 103 TYR TYR A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 SER 117 116 116 SER SER A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 ILE 122 121 121 ILE ILE A . n A 1 123 GLY 123 122 122 GLY GLY A . n A 1 124 ASN 124 123 123 ASN ASN A . n A 1 125 CYS 125 124 124 CYS CYS A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 ASN 128 127 127 ASN ASN A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 HIS 130 129 129 HIS HIS A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 TYR 133 132 132 TYR TYR A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 TRP 138 137 137 TRP TRP A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 ASN 145 144 144 ASN ASN A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 ILE 148 147 147 ILE ILE A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 GLU 155 154 154 GLU GLU A . n A 1 156 TRP 156 155 155 TRP TRP A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 ILE 160 159 159 ILE ILE A . n A 1 161 ARG 161 160 160 ARG ARG A . n A 1 162 LEU 162 161 161 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 162 1 FMN FMN A . C 3 NA 1 163 2 NA NA A . D 4 GOL 1 164 3 GOL GOL A . E 4 GOL 1 165 4 GOL GOL A . F 5 EDO 1 166 5 EDO EDO A . G 5 EDO 1 167 6 EDO EDO A . H 5 EDO 1 168 7 EDO EDO A . I 5 EDO 1 169 8 EDO EDO A . J 5 EDO 1 170 9 EDO EDO A . K 5 EDO 1 171 10 EDO EDO A . L 5 EDO 1 172 11 EDO EDO A . M 5 EDO 1 173 12 EDO EDO A . N 5 EDO 1 174 13 EDO EDO A . O 5 EDO 1 175 14 EDO EDO A . P 6 HOH 1 176 176 HOH HOH A . P 6 HOH 2 177 177 HOH HOH A . P 6 HOH 3 178 178 HOH HOH A . P 6 HOH 4 179 179 HOH HOH A . P 6 HOH 5 180 180 HOH HOH A . P 6 HOH 6 181 181 HOH HOH A . P 6 HOH 7 182 182 HOH HOH A . P 6 HOH 8 183 183 HOH HOH A . P 6 HOH 9 184 184 HOH HOH A . P 6 HOH 10 185 185 HOH HOH A . P 6 HOH 11 186 186 HOH HOH A . P 6 HOH 12 187 187 HOH HOH A . P 6 HOH 13 188 188 HOH HOH A . P 6 HOH 14 189 189 HOH HOH A . P 6 HOH 15 190 15 HOH HOH A . P 6 HOH 16 191 16 HOH HOH A . P 6 HOH 17 192 17 HOH HOH A . P 6 HOH 18 193 18 HOH HOH A . P 6 HOH 19 194 19 HOH HOH A . P 6 HOH 20 195 20 HOH HOH A . P 6 HOH 21 196 21 HOH HOH A . P 6 HOH 22 197 22 HOH HOH A . P 6 HOH 23 198 23 HOH HOH A . P 6 HOH 24 199 24 HOH HOH A . P 6 HOH 25 200 25 HOH HOH A . P 6 HOH 26 201 26 HOH HOH A . P 6 HOH 27 202 27 HOH HOH A . P 6 HOH 28 203 28 HOH HOH A . P 6 HOH 29 204 29 HOH HOH A . P 6 HOH 30 205 30 HOH HOH A . P 6 HOH 31 206 31 HOH HOH A . P 6 HOH 32 207 32 HOH HOH A . P 6 HOH 33 208 33 HOH HOH A . P 6 HOH 34 209 34 HOH HOH A . P 6 HOH 35 210 35 HOH HOH A . P 6 HOH 36 211 36 HOH HOH A . P 6 HOH 37 212 37 HOH HOH A . P 6 HOH 38 213 38 HOH HOH A . P 6 HOH 39 214 39 HOH HOH A . P 6 HOH 40 215 40 HOH HOH A . P 6 HOH 41 216 41 HOH HOH A . P 6 HOH 42 217 42 HOH HOH A . P 6 HOH 43 218 43 HOH HOH A . P 6 HOH 44 219 44 HOH HOH A . P 6 HOH 45 220 45 HOH HOH A . P 6 HOH 46 221 46 HOH HOH A . P 6 HOH 47 222 47 HOH HOH A . P 6 HOH 48 223 48 HOH HOH A . P 6 HOH 49 224 49 HOH HOH A . P 6 HOH 50 225 50 HOH HOH A . P 6 HOH 51 226 51 HOH HOH A . P 6 HOH 52 227 52 HOH HOH A . P 6 HOH 53 228 53 HOH HOH A . P 6 HOH 54 229 54 HOH HOH A . P 6 HOH 55 230 55 HOH HOH A . P 6 HOH 56 231 56 HOH HOH A . P 6 HOH 57 232 57 HOH HOH A . P 6 HOH 58 233 58 HOH HOH A . P 6 HOH 59 234 59 HOH HOH A . P 6 HOH 60 235 60 HOH HOH A . P 6 HOH 61 236 61 HOH HOH A . P 6 HOH 62 237 62 HOH HOH A . P 6 HOH 63 238 63 HOH HOH A . P 6 HOH 64 239 64 HOH HOH A . P 6 HOH 65 240 65 HOH HOH A . P 6 HOH 66 241 66 HOH HOH A . P 6 HOH 67 242 67 HOH HOH A . P 6 HOH 68 243 68 HOH HOH A . P 6 HOH 69 244 69 HOH HOH A . P 6 HOH 70 245 70 HOH HOH A . P 6 HOH 71 246 71 HOH HOH A . P 6 HOH 72 247 72 HOH HOH A . P 6 HOH 73 248 73 HOH HOH A . P 6 HOH 74 249 74 HOH HOH A . P 6 HOH 75 250 75 HOH HOH A . P 6 HOH 76 251 76 HOH HOH A . P 6 HOH 77 252 77 HOH HOH A . P 6 HOH 78 253 78 HOH HOH A . P 6 HOH 79 254 79 HOH HOH A . P 6 HOH 80 255 80 HOH HOH A . P 6 HOH 81 256 81 HOH HOH A . P 6 HOH 82 257 82 HOH HOH A . P 6 HOH 83 258 83 HOH HOH A . P 6 HOH 84 259 84 HOH HOH A . P 6 HOH 85 260 85 HOH HOH A . P 6 HOH 86 261 86 HOH HOH A . P 6 HOH 87 262 87 HOH HOH A . P 6 HOH 88 263 88 HOH HOH A . P 6 HOH 89 264 89 HOH HOH A . P 6 HOH 90 265 90 HOH HOH A . P 6 HOH 91 266 91 HOH HOH A . P 6 HOH 92 267 92 HOH HOH A . P 6 HOH 93 268 93 HOH HOH A . P 6 HOH 94 269 94 HOH HOH A . P 6 HOH 95 270 95 HOH HOH A . P 6 HOH 96 271 96 HOH HOH A . P 6 HOH 97 272 97 HOH HOH A . P 6 HOH 98 273 98 HOH HOH A . P 6 HOH 99 274 99 HOH HOH A . P 6 HOH 100 275 100 HOH HOH A . P 6 HOH 101 276 101 HOH HOH A . P 6 HOH 102 277 102 HOH HOH A . P 6 HOH 103 278 103 HOH HOH A . P 6 HOH 104 279 104 HOH HOH A . P 6 HOH 105 280 105 HOH HOH A . P 6 HOH 106 281 106 HOH HOH A . P 6 HOH 107 282 107 HOH HOH A . P 6 HOH 108 283 108 HOH HOH A . P 6 HOH 109 284 109 HOH HOH A . P 6 HOH 110 285 110 HOH HOH A . P 6 HOH 111 286 111 HOH HOH A . P 6 HOH 112 287 112 HOH HOH A . P 6 HOH 113 288 113 HOH HOH A . P 6 HOH 114 289 114 HOH HOH A . P 6 HOH 115 290 115 HOH HOH A . P 6 HOH 116 291 116 HOH HOH A . P 6 HOH 117 292 117 HOH HOH A . P 6 HOH 118 293 118 HOH HOH A . P 6 HOH 119 294 119 HOH HOH A . P 6 HOH 120 295 120 HOH HOH A . P 6 HOH 121 296 121 HOH HOH A . P 6 HOH 122 297 122 HOH HOH A . P 6 HOH 123 298 123 HOH HOH A . P 6 HOH 124 299 124 HOH HOH A . P 6 HOH 125 300 125 HOH HOH A . P 6 HOH 126 301 126 HOH HOH A . P 6 HOH 127 302 127 HOH HOH A . P 6 HOH 128 303 128 HOH HOH A . P 6 HOH 129 304 129 HOH HOH A . P 6 HOH 130 305 130 HOH HOH A . P 6 HOH 131 306 131 HOH HOH A . P 6 HOH 132 307 132 HOH HOH A . P 6 HOH 133 308 133 HOH HOH A . P 6 HOH 134 309 134 HOH HOH A . P 6 HOH 135 310 135 HOH HOH A . P 6 HOH 136 311 136 HOH HOH A . P 6 HOH 137 312 137 HOH HOH A . P 6 HOH 138 313 138 HOH HOH A . P 6 HOH 139 314 139 HOH HOH A . P 6 HOH 140 315 140 HOH HOH A . P 6 HOH 141 316 141 HOH HOH A . P 6 HOH 142 317 142 HOH HOH A . P 6 HOH 143 318 143 HOH HOH A . P 6 HOH 144 319 144 HOH HOH A . P 6 HOH 145 320 145 HOH HOH A . P 6 HOH 146 321 146 HOH HOH A . P 6 HOH 147 322 147 HOH HOH A . P 6 HOH 148 323 148 HOH HOH A . P 6 HOH 149 324 149 HOH HOH A . P 6 HOH 150 325 150 HOH HOH A . P 6 HOH 151 326 151 HOH HOH A . P 6 HOH 152 327 152 HOH HOH A . P 6 HOH 153 328 153 HOH HOH A . P 6 HOH 154 329 154 HOH HOH A . P 6 HOH 155 330 155 HOH HOH A . P 6 HOH 156 331 156 HOH HOH A . P 6 HOH 157 332 157 HOH HOH A . P 6 HOH 158 333 158 HOH HOH A . P 6 HOH 159 334 159 HOH HOH A . P 6 HOH 160 335 160 HOH HOH A . P 6 HOH 161 336 161 HOH HOH A . P 6 HOH 162 337 162 HOH HOH A . P 6 HOH 163 338 163 HOH HOH A . P 6 HOH 164 339 164 HOH HOH A . P 6 HOH 165 340 165 HOH HOH A . P 6 HOH 166 341 166 HOH HOH A . P 6 HOH 167 342 167 HOH HOH A . P 6 HOH 168 343 168 HOH HOH A . P 6 HOH 169 344 169 HOH HOH A . P 6 HOH 170 345 170 HOH HOH A . P 6 HOH 171 346 171 HOH HOH A . P 6 HOH 172 347 172 HOH HOH A . P 6 HOH 173 348 173 HOH HOH A . P 6 HOH 174 349 174 HOH HOH A . P 6 HOH 175 350 175 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 59 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 163 ? C NA . 2 1 A HOH 195 ? P HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A PRO 134 ? A PRO 133 ? 1_555 0.0 ? 2 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A ILE 136 ? A ILE 135 ? 1_555 103.6 ? 3 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A ILE 136 ? A ILE 135 ? 1_555 103.6 ? 4 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A ILE 136 ? A ILE 135 ? 1_555 103.6 ? 5 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A ILE 136 ? A ILE 135 ? 1_555 103.6 ? 6 O ? A ILE 136 ? A ILE 135 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? A ILE 136 ? A ILE 135 ? 1_555 0.0 ? 7 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 1_555 83.3 ? 8 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 1_555 83.3 ? 9 O ? A ILE 136 ? A ILE 135 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 1_555 127.2 ? 10 O ? A ILE 136 ? A ILE 135 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 1_555 127.2 ? 11 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 7_556 83.2 ? 12 O ? A PRO 134 ? A PRO 133 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 7_556 83.2 ? 13 O ? A ILE 136 ? A ILE 135 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 7_556 127.7 ? 14 O ? A ILE 136 ? A ILE 135 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 7_556 127.7 ? 15 O ? P HOH . ? A HOH 195 ? 1_555 NA ? C NA . ? A NA 163 ? 1_555 O ? P HOH . ? A HOH 195 ? 7_556 0.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_conn_type 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 5 'Structure model' '_database_2.pdbx_DOI' 12 5 'Structure model' '_database_2.pdbx_database_accession' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_symmetry' 37 5 'Structure model' '_struct_ref_seq_dif.details' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 31.3526 _pdbx_refine_tls.origin_y 10.2525 _pdbx_refine_tls.origin_z 29.4288 _pdbx_refine_tls.T[1][1] -0.0493 _pdbx_refine_tls.T[2][2] -0.0380 _pdbx_refine_tls.T[3][3] -0.0601 _pdbx_refine_tls.T[1][2] 0.0069 _pdbx_refine_tls.T[1][3] 0.0042 _pdbx_refine_tls.T[2][3] 0.0046 _pdbx_refine_tls.L[1][1] 1.2386 _pdbx_refine_tls.L[2][2] 1.2571 _pdbx_refine_tls.L[3][3] 0.6885 _pdbx_refine_tls.L[1][2] -0.0659 _pdbx_refine_tls.L[1][3] 0.0748 _pdbx_refine_tls.L[2][3] 0.3734 _pdbx_refine_tls.S[1][1] -0.0074 _pdbx_refine_tls.S[2][2] -0.0022 _pdbx_refine_tls.S[3][3] 0.0096 _pdbx_refine_tls.S[1][2] -0.0201 _pdbx_refine_tls.S[1][3] 0.0202 _pdbx_refine_tls.S[2][3] -0.0244 _pdbx_refine_tls.S[2][1] -0.0269 _pdbx_refine_tls.S[3][1] -0.0316 _pdbx_refine_tls.S[3][2] 0.0109 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 161 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3KLB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (1-161) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 2 ? CG ? A ASN 3 CG 2 1 Y 1 A ASN 2 ? OD1 ? A ASN 3 OD1 3 1 Y 1 A ASN 2 ? ND2 ? A ASN 3 ND2 4 1 Y 1 A ASP 3 ? CG ? A ASP 4 CG 5 1 Y 1 A ASP 3 ? OD1 ? A ASP 4 OD1 6 1 Y 1 A ASP 3 ? OD2 ? A ASP 4 OD2 7 1 Y 1 A ARG 4 ? CG ? A ARG 5 CG 8 1 Y 1 A ARG 4 ? CD ? A ARG 5 CD 9 1 Y 1 A ARG 4 ? NE ? A ARG 5 NE 10 1 Y 1 A ARG 4 ? CZ ? A ARG 5 CZ 11 1 Y 1 A ARG 4 ? NH1 ? A ARG 5 NH1 12 1 Y 1 A ARG 4 ? NH2 ? A ARG 5 NH2 13 1 Y 1 A LYS 5 ? CD ? A LYS 6 CD 14 1 Y 1 A LYS 5 ? CE ? A LYS 6 CE 15 1 Y 1 A LYS 5 ? NZ ? A LYS 6 NZ 16 1 Y 1 A LYS 36 ? CD ? A LYS 37 CD 17 1 Y 1 A LYS 36 ? CE ? A LYS 37 CE 18 1 Y 1 A LYS 36 ? NZ ? A LYS 37 NZ 19 1 Y 1 A LYS 51 ? CD ? A LYS 52 CD 20 1 Y 1 A LYS 51 ? CE ? A LYS 52 CE 21 1 Y 1 A LYS 51 ? NZ ? A LYS 52 NZ 22 1 Y 1 A LYS 52 ? CD ? A LYS 53 CD 23 1 Y 1 A LYS 52 ? CE ? A LYS 53 CE 24 1 Y 1 A LYS 52 ? NZ ? A LYS 53 NZ 25 1 Y 1 A LYS 158 ? CG ? A LYS 159 CG 26 1 Y 1 A LYS 158 ? CD ? A LYS 159 CD 27 1 Y 1 A LYS 158 ? CE ? A LYS 159 CE 28 1 Y 1 A LYS 158 ? NZ ? A LYS 159 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'SODIUM ION' NA 4 GLYCEROL GOL 5 1,2-ETHANEDIOL EDO 6 water HOH #