HEADER TRANSCRIPTION 08-NOV-09 3KLN TITLE VIBRIO CHOLERAE VPST COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LUXR FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 686; SOURCE 4 STRAIN: O1 EL TOR; SOURCE 5 GENE: VCA0952, VC_A0952; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS REC DOMAIN, HTH DOMAIN, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR P.V.KRASTEVA,V.A.S.NAVARRO,H.SONDERMANN REVDAT 3 21-FEB-24 3KLN 1 SEQADV REVDAT 2 02-MAR-10 3KLN 1 JRNL REVDAT 1 09-FEB-10 3KLN 0 JRNL AUTH P.V.KRASTEVA,J.C.FONG,N.J.SHIKUMA,S.BEYHAN,M.V.NAVARRO, JRNL AUTH 2 F.H.YILDIZ,H.SONDERMANN JRNL TITL VIBRIO CHOLERAE VPST REGULATES MATRIX PRODUCTION AND JRNL TITL 2 MOTILITY BY DIRECTLY SENSING CYCLIC DI-GMP. JRNL REF SCIENCE V. 327 866 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 20150502 JRNL DOI 10.1126/SCIENCE.1181185 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 51824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9036 - 8.0526 0.93 2600 138 0.2443 0.3096 REMARK 3 2 8.0526 - 6.3971 0.99 2739 145 0.2182 0.2994 REMARK 3 3 6.3971 - 5.5901 1.00 2770 145 0.2337 0.2552 REMARK 3 4 5.5901 - 5.0797 1.00 2767 146 0.2073 0.3456 REMARK 3 5 5.0797 - 4.7160 0.99 2765 136 0.2102 0.2936 REMARK 3 6 4.7160 - 4.4382 0.99 2767 146 0.1968 0.2419 REMARK 3 7 4.4382 - 4.2161 0.99 2723 138 0.2088 0.2622 REMARK 3 8 4.2161 - 4.0327 0.99 2781 150 0.2200 0.3218 REMARK 3 9 4.0327 - 3.8775 0.99 2732 150 0.2398 0.3009 REMARK 3 10 3.8775 - 3.7438 1.00 2765 148 0.2344 0.2661 REMARK 3 11 3.7438 - 3.6268 0.99 2772 146 0.2463 0.3079 REMARK 3 12 3.6268 - 3.5231 0.99 2741 144 0.2533 0.3185 REMARK 3 13 3.5231 - 3.4304 0.99 2749 145 0.2769 0.3284 REMARK 3 14 3.4304 - 3.3467 0.99 2771 143 0.3023 0.3361 REMARK 3 15 3.3467 - 3.2707 0.99 2752 149 0.3228 0.3507 REMARK 3 16 3.2707 - 3.2011 1.00 2724 143 0.3126 0.3422 REMARK 3 17 3.2011 - 3.1371 0.99 2806 144 0.3513 0.3872 REMARK 3 18 3.1371 - 3.0779 0.91 2511 133 0.3989 0.3855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 46.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6753 REMARK 3 ANGLE : 1.271 9107 REMARK 3 CHIRALITY : 0.082 1045 REMARK 3 PLANARITY : 0.004 1141 REMARK 3 DIHEDRAL : 19.914 2551 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL; NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS; NSLS REMARK 200 BEAMLINE : X29A; X29A; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788; 0.9794; 1.0809 REMARK 200 MONOCHROMATOR : SI(111); NULL; NULL REMARK 200 OPTICS : MIRRORS; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52138 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.078 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-CL, 0.8M POTASSIUM SODIUM REMARK 280 TARTRATE TETRAHYDRATE, 3-5% PEG-MME 5000, 8-12% XYLITOL, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.14500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.74450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.74450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.57250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.74450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.74450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.74450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.74450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.57250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.74450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.74450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 148.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -60.74450 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -60.74450 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -49.57250 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -60.74450 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 60.74450 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 49.57250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 220 REMARK 465 GLU A 221 REMARK 465 VAL A 222 REMARK 465 ASN A 223 REMARK 465 SER A 224 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 220 REMARK 465 GLU B 221 REMARK 465 VAL B 222 REMARK 465 ASN B 223 REMARK 465 SER B 224 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASP C 3 REMARK 465 ILE C 217 REMARK 465 GLY C 218 REMARK 465 ILE C 219 REMARK 465 GLU C 220 REMARK 465 GLU C 221 REMARK 465 VAL C 222 REMARK 465 ASN C 223 REMARK 465 SER C 224 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASP D 3 REMARK 465 SER D 153 REMARK 465 GLN D 154 REMARK 465 MET D 155 REMARK 465 TYR D 156 REMARK 465 ALA D 157 REMARK 465 LYS D 158 REMARK 465 LEU D 159 REMARK 465 THR D 160 REMARK 465 LYS D 161 REMARK 465 ARG D 162 REMARK 465 GLU D 163 REMARK 465 GLN D 164 REMARK 465 GLN D 165 REMARK 465 ILE D 166 REMARK 465 ILE D 167 REMARK 465 LYS D 168 REMARK 465 LEU D 169 REMARK 465 LEU D 170 REMARK 465 GLY D 171 REMARK 465 SER D 172 REMARK 465 GLY D 173 REMARK 465 ALA D 174 REMARK 465 SER D 175 REMARK 465 ASN D 176 REMARK 465 ILE D 177 REMARK 465 GLU D 178 REMARK 465 ILE D 179 REMARK 465 ALA D 180 REMARK 465 ASP D 181 REMARK 465 LYS D 182 REMARK 465 LEU D 183 REMARK 465 PHE D 184 REMARK 465 VAL D 185 REMARK 465 SER D 186 REMARK 465 GLU D 187 REMARK 465 ASN D 188 REMARK 465 THR D 189 REMARK 465 VAL D 190 REMARK 465 LYS D 191 REMARK 465 THR D 192 REMARK 465 ILE D 217 REMARK 465 GLY D 218 REMARK 465 ILE D 219 REMARK 465 GLU D 220 REMARK 465 GLU D 221 REMARK 465 VAL D 222 REMARK 465 ASN D 223 REMARK 465 SER D 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 75 OG SER B 79 2.14 REMARK 500 O LYS B 120 OG SER B 123 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 169.86 176.63 REMARK 500 ASP A 93 56.51 -107.76 REMARK 500 TRP A 131 78.97 -111.87 REMARK 500 PHE A 184 67.79 63.19 REMARK 500 ASN A 202 35.84 73.97 REMARK 500 ASN A 205 -179.69 -171.95 REMARK 500 SER B 40 -17.64 -47.95 REMARK 500 LEU B 98 -18.71 -48.29 REMARK 500 SER B 149 -98.23 -107.98 REMARK 500 PHE B 184 67.61 63.35 REMARK 500 PHE B 198 -18.42 -48.46 REMARK 500 ASN B 202 10.90 93.57 REMARK 500 CYS C 16 176.46 179.18 REMARK 500 CYS C 80 64.61 -151.21 REMARK 500 HIS C 143 -74.09 -49.49 REMARK 500 ASN C 202 15.18 85.18 REMARK 500 ASP D 128 11.34 89.98 REMARK 500 TRP D 131 60.16 -110.00 REMARK 500 SER D 149 -97.75 -123.10 REMARK 500 LYS D 200 49.89 -97.19 REMARK 500 ASN D 215 33.24 -86.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KLO RELATED DB: PDB DBREF 3KLN A 1 224 UNP Q9KKZ8 Q9KKZ8_VIBCH 1 224 DBREF 3KLN B 1 224 UNP Q9KKZ8 Q9KKZ8_VIBCH 1 224 DBREF 3KLN C 1 224 UNP Q9KKZ8 Q9KKZ8_VIBCH 1 224 DBREF 3KLN D 1 224 UNP Q9KKZ8 Q9KKZ8_VIBCH 1 224 SEQADV 3KLN SER A 0 UNP Q9KKZ8 EXPRESSION TAG SEQADV 3KLN SER B 0 UNP Q9KKZ8 EXPRESSION TAG SEQADV 3KLN SER C 0 UNP Q9KKZ8 EXPRESSION TAG SEQADV 3KLN SER D 0 UNP Q9KKZ8 EXPRESSION TAG SEQRES 1 A 225 SER MET LYS ASP GLU ASN LYS LEU ASN VAL ARG MET LEU SEQRES 2 A 225 SER ASP VAL CYS MET GLN SER ARG LEU LEU LYS GLU ALA SEQRES 3 A 225 LEU GLU SER LYS LEU PRO LEU ALA LEU GLU ILE THR PRO SEQRES 4 A 225 PHE SER GLU LEU TRP LEU GLU GLU ASN LYS PRO GLU SER SEQRES 5 A 225 ARG SER ILE GLN MET LEU VAL ILE ASP TYR SER ARG ILE SEQRES 6 A 225 SER ASP ASP VAL LEU THR ASP TYR SER SER PHE LYS HIS SEQRES 7 A 225 ILE SER CYS PRO ASP ALA LYS GLU VAL ILE ILE ASN CYS SEQRES 8 A 225 PRO GLN ASP ILE GLU HIS LYS LEU LEU PHE LYS TRP ASN SEQRES 9 A 225 ASN LEU ALA GLY VAL PHE TYR ILE ASP ASP ASP MET ASP SEQRES 10 A 225 THR LEU ILE LYS GLY MET SER LYS ILE LEU GLN ASP GLU SEQRES 11 A 225 MET TRP LEU THR ARG LYS LEU ALA GLN GLU TYR ILE LEU SEQRES 12 A 225 HIS TYR ARG ALA GLY ASN SER VAL VAL THR SER GLN MET SEQRES 13 A 225 TYR ALA LYS LEU THR LYS ARG GLU GLN GLN ILE ILE LYS SEQRES 14 A 225 LEU LEU GLY SER GLY ALA SER ASN ILE GLU ILE ALA ASP SEQRES 15 A 225 LYS LEU PHE VAL SER GLU ASN THR VAL LYS THR HIS LEU SEQRES 16 A 225 HIS ASN VAL PHE LYS LYS ILE ASN ALA LYS ASN ARG LEU SEQRES 17 A 225 GLN ALA LEU ILE TRP ALA LYS ASN ASN ILE GLY ILE GLU SEQRES 18 A 225 GLU VAL ASN SER SEQRES 1 B 225 SER MET LYS ASP GLU ASN LYS LEU ASN VAL ARG MET LEU SEQRES 2 B 225 SER ASP VAL CYS MET GLN SER ARG LEU LEU LYS GLU ALA SEQRES 3 B 225 LEU GLU SER LYS LEU PRO LEU ALA LEU GLU ILE THR PRO SEQRES 4 B 225 PHE SER GLU LEU TRP LEU GLU GLU ASN LYS PRO GLU SER SEQRES 5 B 225 ARG SER ILE GLN MET LEU VAL ILE ASP TYR SER ARG ILE SEQRES 6 B 225 SER ASP ASP VAL LEU THR ASP TYR SER SER PHE LYS HIS SEQRES 7 B 225 ILE SER CYS PRO ASP ALA LYS GLU VAL ILE ILE ASN CYS SEQRES 8 B 225 PRO GLN ASP ILE GLU HIS LYS LEU LEU PHE LYS TRP ASN SEQRES 9 B 225 ASN LEU ALA GLY VAL PHE TYR ILE ASP ASP ASP MET ASP SEQRES 10 B 225 THR LEU ILE LYS GLY MET SER LYS ILE LEU GLN ASP GLU SEQRES 11 B 225 MET TRP LEU THR ARG LYS LEU ALA GLN GLU TYR ILE LEU SEQRES 12 B 225 HIS TYR ARG ALA GLY ASN SER VAL VAL THR SER GLN MET SEQRES 13 B 225 TYR ALA LYS LEU THR LYS ARG GLU GLN GLN ILE ILE LYS SEQRES 14 B 225 LEU LEU GLY SER GLY ALA SER ASN ILE GLU ILE ALA ASP SEQRES 15 B 225 LYS LEU PHE VAL SER GLU ASN THR VAL LYS THR HIS LEU SEQRES 16 B 225 HIS ASN VAL PHE LYS LYS ILE ASN ALA LYS ASN ARG LEU SEQRES 17 B 225 GLN ALA LEU ILE TRP ALA LYS ASN ASN ILE GLY ILE GLU SEQRES 18 B 225 GLU VAL ASN SER SEQRES 1 C 225 SER MET LYS ASP GLU ASN LYS LEU ASN VAL ARG MET LEU SEQRES 2 C 225 SER ASP VAL CYS MET GLN SER ARG LEU LEU LYS GLU ALA SEQRES 3 C 225 LEU GLU SER LYS LEU PRO LEU ALA LEU GLU ILE THR PRO SEQRES 4 C 225 PHE SER GLU LEU TRP LEU GLU GLU ASN LYS PRO GLU SER SEQRES 5 C 225 ARG SER ILE GLN MET LEU VAL ILE ASP TYR SER ARG ILE SEQRES 6 C 225 SER ASP ASP VAL LEU THR ASP TYR SER SER PHE LYS HIS SEQRES 7 C 225 ILE SER CYS PRO ASP ALA LYS GLU VAL ILE ILE ASN CYS SEQRES 8 C 225 PRO GLN ASP ILE GLU HIS LYS LEU LEU PHE LYS TRP ASN SEQRES 9 C 225 ASN LEU ALA GLY VAL PHE TYR ILE ASP ASP ASP MET ASP SEQRES 10 C 225 THR LEU ILE LYS GLY MET SER LYS ILE LEU GLN ASP GLU SEQRES 11 C 225 MET TRP LEU THR ARG LYS LEU ALA GLN GLU TYR ILE LEU SEQRES 12 C 225 HIS TYR ARG ALA GLY ASN SER VAL VAL THR SER GLN MET SEQRES 13 C 225 TYR ALA LYS LEU THR LYS ARG GLU GLN GLN ILE ILE LYS SEQRES 14 C 225 LEU LEU GLY SER GLY ALA SER ASN ILE GLU ILE ALA ASP SEQRES 15 C 225 LYS LEU PHE VAL SER GLU ASN THR VAL LYS THR HIS LEU SEQRES 16 C 225 HIS ASN VAL PHE LYS LYS ILE ASN ALA LYS ASN ARG LEU SEQRES 17 C 225 GLN ALA LEU ILE TRP ALA LYS ASN ASN ILE GLY ILE GLU SEQRES 18 C 225 GLU VAL ASN SER SEQRES 1 D 225 SER MET LYS ASP GLU ASN LYS LEU ASN VAL ARG MET LEU SEQRES 2 D 225 SER ASP VAL CYS MET GLN SER ARG LEU LEU LYS GLU ALA SEQRES 3 D 225 LEU GLU SER LYS LEU PRO LEU ALA LEU GLU ILE THR PRO SEQRES 4 D 225 PHE SER GLU LEU TRP LEU GLU GLU ASN LYS PRO GLU SER SEQRES 5 D 225 ARG SER ILE GLN MET LEU VAL ILE ASP TYR SER ARG ILE SEQRES 6 D 225 SER ASP ASP VAL LEU THR ASP TYR SER SER PHE LYS HIS SEQRES 7 D 225 ILE SER CYS PRO ASP ALA LYS GLU VAL ILE ILE ASN CYS SEQRES 8 D 225 PRO GLN ASP ILE GLU HIS LYS LEU LEU PHE LYS TRP ASN SEQRES 9 D 225 ASN LEU ALA GLY VAL PHE TYR ILE ASP ASP ASP MET ASP SEQRES 10 D 225 THR LEU ILE LYS GLY MET SER LYS ILE LEU GLN ASP GLU SEQRES 11 D 225 MET TRP LEU THR ARG LYS LEU ALA GLN GLU TYR ILE LEU SEQRES 12 D 225 HIS TYR ARG ALA GLY ASN SER VAL VAL THR SER GLN MET SEQRES 13 D 225 TYR ALA LYS LEU THR LYS ARG GLU GLN GLN ILE ILE LYS SEQRES 14 D 225 LEU LEU GLY SER GLY ALA SER ASN ILE GLU ILE ALA ASP SEQRES 15 D 225 LYS LEU PHE VAL SER GLU ASN THR VAL LYS THR HIS LEU SEQRES 16 D 225 HIS ASN VAL PHE LYS LYS ILE ASN ALA LYS ASN ARG LEU SEQRES 17 D 225 GLN ALA LEU ILE TRP ALA LYS ASN ASN ILE GLY ILE GLU SEQRES 18 D 225 GLU VAL ASN SER HELIX 1 1 CYS A 16 LEU A 30 1 15 HELIX 2 2 PRO A 38 GLU A 45 5 8 HELIX 3 3 LYS A 48 ILE A 54 5 7 HELIX 4 4 SER A 62 ILE A 64 5 3 HELIX 5 5 SER A 65 SER A 79 1 15 HELIX 6 6 GLU A 95 PHE A 100 5 6 HELIX 7 7 ASP A 114 LEU A 126 1 13 HELIX 8 8 THR A 133 ALA A 146 1 14 HELIX 9 9 SER A 153 LYS A 158 1 6 HELIX 10 10 THR A 160 GLY A 171 1 12 HELIX 11 11 SER A 175 ASP A 181 1 7 HELIX 12 12 SER A 186 ASN A 202 1 17 HELIX 13 13 ASN A 205 ILE A 217 1 13 HELIX 14 14 CYS B 16 LEU B 30 1 15 HELIX 15 15 PRO B 38 LEU B 42 5 5 HELIX 16 16 LYS B 48 ILE B 54 5 7 HELIX 17 17 SER B 62 ILE B 64 5 3 HELIX 18 18 SER B 65 CYS B 80 1 16 HELIX 19 19 HIS B 96 LYS B 101 1 6 HELIX 20 20 ASP B 114 LEU B 126 1 13 HELIX 21 21 THR B 133 ALA B 146 1 14 HELIX 22 22 SER B 153 LEU B 159 1 7 HELIX 23 23 THR B 160 GLY B 171 1 12 HELIX 24 24 SER B 175 LEU B 183 1 9 HELIX 25 25 SER B 186 ASN B 202 1 17 HELIX 26 26 ASN B 205 ILE B 217 1 13 HELIX 27 27 CYS C 16 LEU C 30 1 15 HELIX 28 28 PRO C 38 GLU C 45 5 8 HELIX 29 29 PRO C 49 ILE C 54 5 6 HELIX 30 30 SER C 62 ILE C 64 5 3 HELIX 31 31 VAL C 68 CYS C 80 1 13 HELIX 32 32 GLU C 95 TRP C 102 5 8 HELIX 33 33 ASP C 114 GLN C 127 1 14 HELIX 34 34 THR C 133 ALA C 146 1 14 HELIX 35 35 MET C 155 LEU C 159 5 5 HELIX 36 36 THR C 160 SER C 172 1 13 HELIX 37 37 SER C 175 ASP C 181 1 7 HELIX 38 38 SER C 186 ASN C 202 1 17 HELIX 39 39 ASN C 205 LYS C 214 1 10 HELIX 40 40 CYS D 16 LEU D 30 1 15 HELIX 41 41 PRO D 38 GLU D 46 5 9 HELIX 42 42 PRO D 49 ILE D 54 5 6 HELIX 43 43 SER D 62 ILE D 64 5 3 HELIX 44 44 SER D 65 VAL D 68 5 4 HELIX 45 45 LEU D 69 CYS D 80 1 12 HELIX 46 46 GLU D 95 PHE D 100 5 6 HELIX 47 47 ASP D 114 GLN D 127 1 14 HELIX 48 48 THR D 133 ALA D 146 1 14 HELIX 49 49 ARG D 206 ASN D 215 1 10 SHEET 1 A 5 LEU A 32 THR A 37 0 SHEET 2 A 5 LEU A 7 LEU A 12 1 N LEU A 7 O ALA A 33 SHEET 3 A 5 MET A 56 ASP A 60 1 O VAL A 58 N LEU A 12 SHEET 4 A 5 LYS A 84 CYS A 90 1 O VAL A 86 N LEU A 57 SHEET 5 A 5 LEU A 105 TYR A 110 1 O ALA A 106 N GLU A 85 SHEET 1 B 5 LEU B 32 THR B 37 0 SHEET 2 B 5 LEU B 7 LEU B 12 1 N LEU B 7 O ALA B 33 SHEET 3 B 5 MET B 56 ASP B 60 1 O VAL B 58 N LEU B 12 SHEET 4 B 5 LYS B 84 CYS B 90 1 O VAL B 86 N LEU B 57 SHEET 5 B 5 LEU B 105 TYR B 110 1 O ALA B 106 N GLU B 85 SHEET 1 C 5 LEU C 32 THR C 37 0 SHEET 2 C 5 LEU C 7 LEU C 12 1 N MET C 11 O GLU C 35 SHEET 3 C 5 MET C 56 ASP C 60 1 O VAL C 58 N LEU C 12 SHEET 4 C 5 LYS C 84 CYS C 90 1 O VAL C 86 N LEU C 57 SHEET 5 C 5 LEU C 105 TYR C 110 1 O PHE C 109 N ILE C 87 SHEET 1 D 5 LEU D 32 ALA D 33 0 SHEET 2 D 5 LEU D 7 LEU D 12 1 N LEU D 7 O ALA D 33 SHEET 3 D 5 MET D 56 ASP D 60 1 O VAL D 58 N ARG D 10 SHEET 4 D 5 LYS D 84 CYS D 90 1 O LYS D 84 N LEU D 57 SHEET 5 D 5 LEU D 105 TYR D 110 1 O ALA D 106 N GLU D 85 CISPEP 1 LYS A 199 LYS A 200 0 2.85 CISPEP 2 GLY B 218 ILE B 219 0 0.13 CISPEP 3 LYS C 199 LYS C 200 0 5.52 CISPEP 4 LYS D 199 LYS D 200 0 5.58 CRYST1 121.489 121.489 198.290 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005043 0.00000