HEADER HYDROLASE 19-NOV-09 3KRY TITLE CRYSTAL STRUCTURE OF MMP-13 IN COMPLEX WITH SC-78080 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 104-267; COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE-13, MMP-13; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COLLAGENASE, COLLAGENASE-3, MMP-13, COLLAGEN DEGRADATION, DISEASE KEYWDS 2 MUTATION, DISULFIDE BOND, EXTRACELLULAR MATRIX, GLYCOPROTEIN, KEYWDS 3 HYDROLASE, METAL-BINDING, METALLOPROTEASE, PROTEASE, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KIEFER,J.M.WILLIAMS,D.P.BECKER REVDAT 4 21-FEB-24 3KRY 1 REMARK LINK REVDAT 3 01-NOV-17 3KRY 1 REMARK REVDAT 2 24-JUN-15 3KRY 1 REMARK VERSN REVDAT 1 06-OCT-10 3KRY 0 JRNL AUTH D.P.BECKER,T.E.BARTA,L.J.BEDELL,T.L.BOEHM,B.R.BOND, JRNL AUTH 2 J.CARROLL,C.P.CARRON,G.A.DECRESCENZO,A.M.EASTON,J.N.FRESKOS, JRNL AUTH 3 C.L.FUNCKES-SHIPPY,M.HERON,S.HOCKERMAN,C.P.HOWARD, JRNL AUTH 4 J.R.KIEFER,M.H.LI,K.J.MATHIS,J.J.MCDONALD,P.P.MEHTA, JRNL AUTH 5 G.E.MUNIE,T.SUNYER,C.A.SWEARINGEN,C.I.VILLAMIL,D.WELSCH, JRNL AUTH 6 J.M.WILLIAMS,Y.YU,J.YAO JRNL TITL ORALLY-ACTIVE MMP-1 SPARING ALPHA-TETRAHYDROPYRANYL AND JRNL TITL 2 ALPHA-PIPERIDINYL SULFONE MATRIX METALLOPROTEINASE (MMP) JRNL TITL 3 INHIBITORS WITH EFFICACY IN CANCER, ARTHRITIS, AND JRNL TITL 4 CARDIOVASCULAR DISEASE JRNL REF J.MED.CHEM. V. 53 6653 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20726512 JRNL DOI 10.1021/JM100669J REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 46273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5535 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3567 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7546 ; 1.102 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8672 ; 0.798 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;36.169 ;23.961 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;14.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 746 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6170 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1173 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3266 ; 0.480 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1323 ; 0.093 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5256 ; 0.880 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2269 ; 1.264 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2290 ; 2.006 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1104 A 1267 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1822 -0.3569 0.1363 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.0549 REMARK 3 T33: 0.0184 T12: -0.0006 REMARK 3 T13: -0.0038 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.2540 L22: 1.3709 REMARK 3 L33: 1.9744 L12: -0.0391 REMARK 3 L13: -0.0935 L23: -0.5881 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.1339 S13: 0.0295 REMARK 3 S21: -0.0952 S22: 0.0050 S23: 0.0096 REMARK 3 S31: 0.0024 S32: -0.0307 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1104 B 1267 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0688 REMARK 3 T33: 0.0688 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1104 C 1267 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0688 REMARK 3 T33: 0.0688 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1104 D 1267 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0688 REMARK 3 T33: 0.0688 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES BUFFER, PH 7.4 1.4M REMARK 280 LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FOUR PROTEIN MOLECULES WERE OBSERVED IN THE ASYMMETRIC UNIT REMARK 300 OF THE CRYSTAL LATTICE, BUT THEIR ARRANGEMENT IS NOT BELIEVED TO BE REMARK 300 PHYSIOLOGICALLY RELEVANT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 18.05064 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -67.64920 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 248 REMARK 465 LYS D 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 TYR B 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 TYR C 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR D 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 109 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG1 VAL A 259 NE2 GLN A 263 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS C 131 O HOH D 429 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 170 -131.83 43.90 REMARK 500 SER A 182 -169.22 72.77 REMARK 500 ASN A 194 -122.36 65.11 REMARK 500 SER A 210 -155.12 -124.84 REMARK 500 PRO A 242 44.21 -81.62 REMARK 500 LYS B 170 -128.46 41.90 REMARK 500 SER B 182 -166.83 64.67 REMARK 500 ASN B 194 -111.11 58.85 REMARK 500 SER B 210 -162.23 -117.48 REMARK 500 PRO B 242 38.13 -82.98 REMARK 500 LYS B 249 98.98 -57.32 REMARK 500 THR C 110 -97.99 -105.69 REMARK 500 LEU C 111 -84.16 60.83 REMARK 500 LYS C 170 -132.85 42.54 REMARK 500 TYR C 176 73.84 -114.18 REMARK 500 SER C 182 -164.21 63.59 REMARK 500 ASN C 194 -111.06 56.46 REMARK 500 SER C 210 -114.70 -121.77 REMARK 500 PRO C 242 21.36 -77.07 REMARK 500 LYS D 170 -130.76 40.18 REMARK 500 TYR D 176 77.36 -111.63 REMARK 500 SER D 182 -169.37 65.89 REMARK 500 ASN D 194 -124.15 60.29 REMARK 500 SER D 210 -124.95 -118.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR D 246 THR D 247 -148.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1996 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 14 O REMARK 620 2 ASP A 162 O 93.6 REMARK 620 3 ASN A 194 O 78.1 168.8 REMARK 620 4 GLY A 196 O 163.0 85.8 99.9 REMARK 620 5 ASP A 198 OD1 100.8 91.9 97.1 96.2 REMARK 620 6 HOH A 303 O 90.9 83.8 88.8 72.1 167.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 ASP A 174 OD2 112.7 REMARK 620 3 HIS A 187 NE2 114.3 112.9 REMARK 620 4 HIS A 200 ND1 102.6 100.2 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 GLY A 180 O 87.3 REMARK 620 3 SER A 182 O 90.1 92.9 REMARK 620 4 LEU A 184 O 93.7 178.7 87.9 REMARK 620 5 ASP A 202 OD2 89.7 85.1 178.1 94.0 REMARK 620 6 GLU A 205 OE2 172.8 90.9 83.0 88.2 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS A 226 NE2 98.6 REMARK 620 3 HIS A 232 NE2 109.5 97.5 REMARK 620 4 3KR A1800 O11 116.0 100.6 127.3 REMARK 620 5 3KR A1800 O14 97.4 164.0 77.0 72.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2996 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 96 O REMARK 620 2 ASP B 162 O 92.6 REMARK 620 3 ASN B 194 O 76.9 168.0 REMARK 620 4 GLY B 196 O 170.1 90.9 98.6 REMARK 620 5 ASP B 198 OD1 94.8 92.3 94.2 94.4 REMARK 620 6 HOH B 295 O 87.6 89.1 84.8 83.2 177.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 172 NE2 REMARK 620 2 ASP B 174 OD2 109.1 REMARK 620 3 HIS B 187 NE2 113.3 118.8 REMARK 620 4 HIS B 200 ND1 106.1 98.9 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 OD1 REMARK 620 2 GLY B 180 O 88.3 REMARK 620 3 SER B 182 O 89.0 89.0 REMARK 620 4 LEU B 184 O 96.0 175.6 90.2 REMARK 620 5 ASP B 202 OD2 93.0 87.8 176.1 92.9 REMARK 620 6 GLU B 205 OE2 172.9 88.2 84.7 87.4 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 222 NE2 REMARK 620 2 HIS B 226 NE2 98.2 REMARK 620 3 HIS B 232 NE2 108.9 96.5 REMARK 620 4 3KR B2800 O14 98.2 162.8 83.1 REMARK 620 5 3KR B2800 O11 113.0 98.7 132.5 70.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C3996 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 162 O REMARK 620 2 ASN C 194 O 162.5 REMARK 620 3 GLY C 196 O 96.4 101.1 REMARK 620 4 ASP C 198 OD1 86.9 90.7 92.2 REMARK 620 5 HOH C 283 O 87.0 75.9 172.1 95.0 REMARK 620 6 HOH C 438 O 92.3 91.8 82.1 174.2 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C3998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 172 NE2 REMARK 620 2 ASP C 174 OD2 113.7 REMARK 620 3 HIS C 187 NE2 115.6 110.9 REMARK 620 4 HIS C 200 ND1 105.7 94.8 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C3997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 179 OD1 REMARK 620 2 GLY C 180 O 85.9 REMARK 620 3 SER C 182 O 87.1 84.6 REMARK 620 4 LEU C 184 O 96.6 173.9 90.0 REMARK 620 5 ASP C 202 OD2 94.8 85.9 170.2 99.4 REMARK 620 6 GLU C 205 OE2 170.4 89.3 84.2 87.4 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C3999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 222 NE2 REMARK 620 2 HIS C 226 NE2 101.1 REMARK 620 3 HIS C 232 NE2 109.4 97.2 REMARK 620 4 3KR C3800 O11 117.0 95.8 128.0 REMARK 620 5 3KR C3800 O14 97.7 160.6 80.8 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D4996 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 162 O REMARK 620 2 ASN D 194 O 169.7 REMARK 620 3 GLY D 196 O 93.7 96.5 REMARK 620 4 ASP D 198 OD1 85.5 95.6 94.3 REMARK 620 5 HOH D 286 O 91.5 88.0 82.5 175.5 REMARK 620 6 HOH D 305 O 83.9 85.8 168.6 96.6 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D4998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 172 NE2 REMARK 620 2 ASP D 174 OD2 112.2 REMARK 620 3 HIS D 187 NE2 113.4 113.2 REMARK 620 4 HIS D 200 ND1 111.0 93.2 112.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D4997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 179 OD1 REMARK 620 2 GLY D 180 O 86.9 REMARK 620 3 SER D 182 O 85.3 86.9 REMARK 620 4 LEU D 184 O 93.2 176.4 89.6 REMARK 620 5 ASP D 202 OD2 95.6 88.4 175.2 95.1 REMARK 620 6 GLU D 205 OE2 169.0 90.4 83.9 88.7 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D4999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 222 NE2 REMARK 620 2 HIS D 226 NE2 98.7 REMARK 620 3 HIS D 232 NE2 111.5 95.2 REMARK 620 4 3KR D4800 O11 107.0 99.6 135.8 REMARK 620 5 3KR D4800 O14 95.5 164.5 85.2 70.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3KR A 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2997 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3KR B 2800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3998 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3999 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 3996 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 3997 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3KR C 3800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 4998 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 4999 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 4996 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 4997 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3KR D 4800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HFC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP-1 REMARK 900 RELATED ID: 966C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP-13 DBREF 3KRY A 104 267 UNP P45452 MMP13_HUMAN 104 267 DBREF 3KRY B 104 267 UNP P45452 MMP13_HUMAN 104 267 DBREF 3KRY C 104 267 UNP P45452 MMP13_HUMAN 104 267 DBREF 3KRY D 104 267 UNP P45452 MMP13_HUMAN 104 267 SEQRES 1 A 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 A 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 A 164 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 A 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 A 164 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 A 164 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 A 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 A 164 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 A 164 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 A 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 A 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 A 164 GLN GLY ILE GLN SER LEU TYR GLY SEQRES 1 B 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 B 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 B 164 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 B 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 B 164 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 B 164 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 B 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 B 164 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 B 164 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 B 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 B 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 B 164 GLN GLY ILE GLN SER LEU TYR GLY SEQRES 1 C 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 C 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 C 164 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 C 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 C 164 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 C 164 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 C 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 C 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 C 164 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 C 164 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 C 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 C 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 C 164 GLN GLY ILE GLN SER LEU TYR GLY SEQRES 1 D 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 D 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 D 164 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 D 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 D 164 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 D 164 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 D 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 D 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 D 164 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 D 164 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 D 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 D 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 D 164 GLN GLY ILE GLN SER LEU TYR GLY HET ZN A1998 1 HET ZN A1999 1 HET CA A1996 1 HET CA A1997 1 HET 3KR A1800 35 HET ZN B2998 1 HET ZN B2999 1 HET CA B2996 1 HET CA B2997 1 HET 3KR B2800 35 HET ZN C3998 1 HET ZN C3999 1 HET CA C3996 1 HET CA C3997 1 HET 3KR C3800 35 HET ZN D4998 1 HET ZN D4999 1 HET CA D4996 1 HET CA D4997 1 HET 3KR D4800 35 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 3KR 1-(2-METHOXYETHYL)-N-OXO-4-({4-[4-(TRIFLUOROMETHOXY) HETNAM 2 3KR PHENOXY]PHENYL}SULFONYL)PIPERIDINE-4-CARBOXAMIDE FORMUL 5 ZN 8(ZN 2+) FORMUL 7 CA 8(CA 2+) FORMUL 9 3KR 4(C22 H23 F3 N2 O7 S) FORMUL 25 HOH *522(H2 O) HELIX 1 1 THR A 130 ASP A 147 1 18 HELIX 2 2 LEU A 216 GLY A 229 1 14 HELIX 3 3 PRO A 255 GLY A 267 1 13 HELIX 4 4 THR B 130 ASP B 147 1 18 HELIX 5 5 LEU B 216 LEU B 228 1 13 HELIX 6 6 PRO B 255 GLY B 267 1 13 HELIX 7 7 THR C 130 ASP C 147 1 18 HELIX 8 8 LEU C 216 GLY C 229 1 14 HELIX 9 9 PRO C 255 GLY C 267 1 13 HELIX 10 10 THR D 130 ASP D 147 1 18 HELIX 11 11 LEU D 216 GLY D 229 1 14 HELIX 12 12 PRO D 255 GLY D 267 1 13 SHEET 1 A 5 ASN A 152 LEU A 156 0 SHEET 2 A 5 ASN A 117 ILE A 122 1 N TYR A 120 O LEU A 156 SHEET 3 A 5 ILE A 163 GLY A 168 1 O ILE A 165 N ARG A 121 SHEET 4 A 5 ALA A 199 ASP A 202 1 O PHE A 201 N GLY A 168 SHEET 5 A 5 ALA A 186 ALA A 188 -1 N HIS A 187 O HIS A 200 SHEET 1 B 2 TRP A 207 THR A 208 0 SHEET 2 B 2 TYR A 214 ASN A 215 1 O TYR A 214 N THR A 208 SHEET 1 C 2 LEU A 230 ASP A 231 0 SHEET 2 C 2 ASN D 105 VAL D 106 -1 O ASN D 105 N ASP A 231 SHEET 1 D 5 ASN B 152 LEU B 156 0 SHEET 2 D 5 ASN B 117 ILE B 122 1 N TYR B 120 O LEU B 156 SHEET 3 D 5 ILE B 163 GLY B 168 1 O ILE B 165 N ARG B 121 SHEET 4 D 5 ALA B 199 ASP B 202 1 O PHE B 201 N GLY B 168 SHEET 5 D 5 ALA B 186 ALA B 188 -1 N HIS B 187 O HIS B 200 SHEET 1 E 2 TRP B 207 THR B 208 0 SHEET 2 E 2 TYR B 214 ASN B 215 1 O TYR B 214 N THR B 208 SHEET 1 F 5 ASN C 152 ARG C 155 0 SHEET 2 F 5 ASN C 117 ILE C 122 1 N LEU C 118 O ASN C 152 SHEET 3 F 5 ILE C 163 GLY C 168 1 O ILE C 165 N ARG C 121 SHEET 4 F 5 ALA C 199 ASP C 202 1 O PHE C 201 N GLY C 168 SHEET 5 F 5 ALA C 186 ALA C 188 -1 N HIS C 187 O HIS C 200 SHEET 1 G 2 TRP C 207 THR C 208 0 SHEET 2 G 2 TYR C 214 ASN C 215 1 O TYR C 214 N THR C 208 SHEET 1 H 5 ASN D 152 ARG D 155 0 SHEET 2 H 5 ASN D 117 ILE D 122 1 N LEU D 118 O ASN D 152 SHEET 3 H 5 ILE D 163 GLY D 168 1 O ILE D 165 N ARG D 121 SHEET 4 H 5 ALA D 199 ASP D 202 1 O ALA D 199 N MET D 164 SHEET 5 H 5 ALA D 186 ALA D 188 -1 N HIS D 187 O HIS D 200 SHEET 1 I 2 TRP D 207 THR D 208 0 SHEET 2 I 2 TYR D 214 ASN D 215 1 O TYR D 214 N THR D 208 LINK O HOH A 14 CA CA A1996 1555 1555 2.58 LINK O ASP A 162 CA CA A1996 1555 1555 2.30 LINK NE2 HIS A 172 ZN ZN A1998 1555 1555 2.02 LINK OD2 ASP A 174 ZN ZN A1998 1555 1555 1.94 LINK OD1 ASP A 179 CA CA A1997 1555 1555 2.42 LINK O GLY A 180 CA CA A1997 1555 1555 2.15 LINK O SER A 182 CA CA A1997 1555 1555 2.30 LINK O LEU A 184 CA CA A1997 1555 1555 2.35 LINK NE2 HIS A 187 ZN ZN A1998 1555 1555 1.95 LINK O ASN A 194 CA CA A1996 1555 1555 2.44 LINK O GLY A 196 CA CA A1996 1555 1555 2.43 LINK OD1 ASP A 198 CA CA A1996 1555 1555 2.48 LINK ND1 HIS A 200 ZN ZN A1998 1555 1555 2.01 LINK OD2 ASP A 202 CA CA A1997 1555 1555 2.34 LINK OE2 GLU A 205 CA CA A1997 1555 1555 2.14 LINK NE2 HIS A 222 ZN ZN A1999 1555 1555 2.11 LINK NE2 HIS A 226 ZN ZN A1999 1555 1555 2.15 LINK NE2 HIS A 232 ZN ZN A1999 1555 1555 2.26 LINK O HOH A 303 CA CA A1996 1555 1555 2.31 LINK O11 3KR A1800 ZN ZN A1999 1555 1555 2.03 LINK O14 3KR A1800 ZN ZN A1999 1555 1555 2.22 LINK O HOH B 96 CA CA B2996 1555 1555 2.55 LINK O ASP B 162 CA CA B2996 1555 1555 2.29 LINK NE2 HIS B 172 ZN ZN B2998 1555 1555 2.03 LINK OD2 ASP B 174 ZN ZN B2998 1555 1555 1.86 LINK OD1 ASP B 179 CA CA B2997 1555 1555 2.32 LINK O GLY B 180 CA CA B2997 1555 1555 2.15 LINK O SER B 182 CA CA B2997 1555 1555 2.35 LINK O LEU B 184 CA CA B2997 1555 1555 2.33 LINK NE2 HIS B 187 ZN ZN B2998 1555 1555 1.93 LINK O ASN B 194 CA CA B2996 1555 1555 2.51 LINK O GLY B 196 CA CA B2996 1555 1555 2.33 LINK OD1 ASP B 198 CA CA B2996 1555 1555 2.53 LINK ND1 HIS B 200 ZN ZN B2998 1555 1555 2.10 LINK OD2 ASP B 202 CA CA B2997 1555 1555 2.38 LINK OE2 GLU B 205 CA CA B2997 1555 1555 2.28 LINK NE2 HIS B 222 ZN ZN B2999 1555 1555 2.03 LINK NE2 HIS B 226 ZN ZN B2999 1555 1555 2.12 LINK NE2 HIS B 232 ZN ZN B2999 1555 1555 2.12 LINK O HOH B 295 CA CA B2996 1555 1555 2.37 LINK O14 3KR B2800 ZN ZN B2999 1555 1555 2.18 LINK O11 3KR B2800 ZN ZN B2999 1555 1555 2.19 LINK O ASP C 162 CA CA C3996 1555 1555 2.28 LINK NE2 HIS C 172 ZN ZN C3998 1555 1555 2.00 LINK OD2 ASP C 174 ZN ZN C3998 1555 1555 1.90 LINK OD1 ASP C 179 CA CA C3997 1555 1555 2.25 LINK O GLY C 180 CA CA C3997 1555 1555 2.27 LINK O SER C 182 CA CA C3997 1555 1555 2.29 LINK O LEU C 184 CA CA C3997 1555 1555 2.22 LINK NE2 HIS C 187 ZN ZN C3998 1555 1555 2.01 LINK O ASN C 194 CA CA C3996 1555 1555 2.38 LINK O GLY C 196 CA CA C3996 1555 1555 2.31 LINK OD1 ASP C 198 CA CA C3996 1555 1555 2.38 LINK ND1 HIS C 200 ZN ZN C3998 1555 1555 2.07 LINK OD2 ASP C 202 CA CA C3997 1555 1555 2.31 LINK OE2 GLU C 205 CA CA C3997 1555 1555 2.20 LINK NE2 HIS C 222 ZN ZN C3999 1555 1555 2.10 LINK NE2 HIS C 226 ZN ZN C3999 1555 1555 2.11 LINK NE2 HIS C 232 ZN ZN C3999 1555 1555 2.09 LINK O HOH C 283 CA CA C3996 1555 1555 2.48 LINK O HOH C 438 CA CA C3996 1555 1555 2.40 LINK O11 3KR C3800 ZN ZN C3999 1555 1555 2.17 LINK O14 3KR C3800 ZN ZN C3999 1555 1555 2.18 LINK O ASP D 162 CA CA D4996 1555 1555 2.26 LINK NE2 HIS D 172 ZN ZN D4998 1555 1555 1.95 LINK OD2 ASP D 174 ZN ZN D4998 1555 1555 1.91 LINK OD1 ASP D 179 CA CA D4997 1555 1555 2.30 LINK O GLY D 180 CA CA D4997 1555 1555 2.35 LINK O SER D 182 CA CA D4997 1555 1555 2.30 LINK O LEU D 184 CA CA D4997 1555 1555 2.28 LINK NE2 HIS D 187 ZN ZN D4998 1555 1555 2.08 LINK O ASN D 194 CA CA D4996 1555 1555 2.25 LINK O GLY D 196 CA CA D4996 1555 1555 2.31 LINK OD1 ASP D 198 CA CA D4996 1555 1555 2.35 LINK ND1 HIS D 200 ZN ZN D4998 1555 1555 2.05 LINK OD2 ASP D 202 CA CA D4997 1555 1555 2.30 LINK OE2 GLU D 205 CA CA D4997 1555 1555 2.24 LINK NE2 HIS D 222 ZN ZN D4999 1555 1555 2.11 LINK NE2 HIS D 226 ZN ZN D4999 1555 1555 2.17 LINK NE2 HIS D 232 ZN ZN D4999 1555 1555 2.05 LINK O HOH D 286 CA CA D4996 1555 1555 2.37 LINK O HOH D 305 CA CA D4996 1555 1555 2.39 LINK O11 3KR D4800 ZN ZN D4999 1555 1555 2.16 LINK O14 3KR D4800 ZN ZN D4999 1555 1555 2.29 CISPEP 1 GLY C 248 LYS C 249 0 -3.79 SITE 1 AC1 4 HIS A 172 ASP A 174 HIS A 187 HIS A 200 SITE 1 AC2 4 HIS A 222 HIS A 226 HIS A 232 3KR A1800 SITE 1 AC3 6 HOH A 14 ASP A 162 ASN A 194 GLY A 196 SITE 2 AC3 6 ASP A 198 HOH A 303 SITE 1 AC4 6 ASP A 179 GLY A 180 SER A 182 LEU A 184 SITE 2 AC4 6 ASP A 202 GLU A 205 SITE 1 AC5 19 HOH A 33 LEU A 184 LEU A 185 ALA A 186 SITE 2 AC5 19 VAL A 219 HIS A 222 GLU A 223 HIS A 226 SITE 3 AC5 19 HIS A 232 ALA A 238 LEU A 239 PHE A 241 SITE 4 AC5 19 PRO A 242 ILE A 243 TYR A 244 THR A 245 SITE 5 AC5 19 HOH A 299 HOH A 328 ZN A1999 SITE 1 AC6 4 HIS B 172 ASP B 174 HIS B 187 HIS B 200 SITE 1 AC7 4 HIS B 222 HIS B 226 HIS B 232 3KR B2800 SITE 1 AC8 6 HOH B 96 ASP B 162 ASN B 194 GLY B 196 SITE 2 AC8 6 ASP B 198 HOH B 295 SITE 1 AC9 6 ASP B 179 GLY B 180 SER B 182 LEU B 184 SITE 2 AC9 6 ASP B 202 GLU B 205 SITE 1 BC1 21 LEU B 184 LEU B 185 ALA B 186 LEU B 218 SITE 2 BC1 21 VAL B 219 HIS B 222 GLU B 223 HIS B 226 SITE 3 BC1 21 HIS B 232 ALA B 238 LEU B 239 PHE B 241 SITE 4 BC1 21 PRO B 242 ILE B 243 TYR B 244 THR B 245 SITE 5 BC1 21 THR B 247 HOH B 302 HOH B 419 HOH B 519 SITE 6 BC1 21 ZN B2999 SITE 1 BC2 4 HIS C 172 ASP C 174 HIS C 187 HIS C 200 SITE 1 BC3 4 HIS C 222 HIS C 226 HIS C 232 3KR C3800 SITE 1 BC4 6 ASP C 162 ASN C 194 GLY C 196 ASP C 198 SITE 2 BC4 6 HOH C 283 HOH C 438 SITE 1 BC5 6 ASP C 179 GLY C 180 SER C 182 LEU C 184 SITE 2 BC5 6 ASP C 202 GLU C 205 SITE 1 BC6 20 GLY C 183 LEU C 184 LEU C 185 ALA C 186 SITE 2 BC6 20 LEU C 218 VAL C 219 HIS C 222 GLU C 223 SITE 3 BC6 20 HIS C 226 HIS C 232 LEU C 239 PHE C 241 SITE 4 BC6 20 PRO C 242 ILE C 243 TYR C 244 THR C 245 SITE 5 BC6 20 THR C 247 HOH C 368 HOH C 483 ZN C3999 SITE 1 BC7 4 HIS D 172 ASP D 174 HIS D 187 HIS D 200 SITE 1 BC8 4 HIS D 222 HIS D 226 HIS D 232 3KR D4800 SITE 1 BC9 6 ASP D 162 ASN D 194 GLY D 196 ASP D 198 SITE 2 BC9 6 HOH D 286 HOH D 305 SITE 1 CC1 6 ASP D 179 GLY D 180 SER D 182 LEU D 184 SITE 2 CC1 6 ASP D 202 GLU D 205 SITE 1 CC2 18 GLY D 183 LEU D 184 LEU D 185 ALA D 186 SITE 2 CC2 18 LEU D 218 VAL D 219 HIS D 222 GLU D 223 SITE 3 CC2 18 HIS D 226 HIS D 232 LEU D 239 PHE D 241 SITE 4 CC2 18 PRO D 242 ILE D 243 TYR D 244 THR D 245 SITE 5 CC2 18 THR D 247 ZN D4999 CRYST1 36.317 70.016 69.094 92.42 94.23 104.94 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027535 0.007347 0.002509 0.00000 SCALE2 0.000000 0.014782 0.000941 0.00000 SCALE3 0.000000 0.000000 0.014542 0.00000