data_3KXZ # _entry.id 3KXZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KXZ RCSB RCSB056587 WWPDB D_1000056587 # _pdbx_database_status.entry_id 3KXZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, Z.B.' 1 'Moy, F.J.' 2 'Kelleher, K.' 3 'Mosyak, L.' 4 'Protein Structure Factory (PSF)' 5 # _citation.id primary _citation.title ;Novel synthesis and structural characterization of a high-affinity paramagnetic kinase probe for the identification of non-ATP site binders by nuclear magnetic resonance. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 53 _citation.page_first 1238 _citation.page_last 1249 _citation.year 2010 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20038108 _citation.pdbx_database_id_DOI 10.1021/jm901525b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Moy, F.J.' 1 primary 'Lee, A.' 2 primary 'Gavrin, L.K.' 3 primary 'Xu, Z.B.' 4 primary 'Sievers, A.' 5 primary 'Kieras, E.' 6 primary 'Stochaj, W.' 7 primary 'Mosyak, L.' 8 primary 'McKew, J.' 9 primary 'Tsao, D.H.' 10 # _cell.entry_id 3KXZ _cell.length_a 42.012 _cell.length_b 73.784 _cell.length_c 84.717 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KXZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proto-oncogene tyrosine-protein kinase LCK' 33209.730 1 2.7.10.2 ? 'LCK Ligand Binding Domain, Kinase domain' 'unknown polymer' 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? SO4 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? CA 4 non-polymer syn '3-[7-[(3-hydroxyphenyl)amino]pyrazolo[1,5-a]pyrimidin-2-yl]-N-(1-hydroxy-2,2,6,6-tetramethyl-piperidin-4-yl)benzamide' 500.592 1 ? ? ? WAC-597259 5 water nat water 18.015 79 ? ? ? HOH # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Lymphocyte cell-specific protein-tyrosine kinase, p56-LCK, LSK, T cell-specific protein-tyrosine kinase' 2 'SULFATE ION' 3 'CALCIUM ION' 4 WAC-597259 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR LYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIAD FGLARLIEDNE(PTR)TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQPQP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR LYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIAD FGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRP DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQPQP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 THR n 1 5 GLN n 1 6 LYS n 1 7 PRO n 1 8 GLN n 1 9 LYS n 1 10 PRO n 1 11 TRP n 1 12 TRP n 1 13 GLU n 1 14 ASP n 1 15 GLU n 1 16 TRP n 1 17 GLU n 1 18 VAL n 1 19 PRO n 1 20 ARG n 1 21 GLU n 1 22 THR n 1 23 LEU n 1 24 LYS n 1 25 LEU n 1 26 VAL n 1 27 GLU n 1 28 ARG n 1 29 LEU n 1 30 GLY n 1 31 ALA n 1 32 GLY n 1 33 GLN n 1 34 PHE n 1 35 GLY n 1 36 GLU n 1 37 VAL n 1 38 TRP n 1 39 MET n 1 40 GLY n 1 41 TYR n 1 42 TYR n 1 43 ASN n 1 44 GLY n 1 45 HIS n 1 46 THR n 1 47 LYS n 1 48 VAL n 1 49 ALA n 1 50 VAL n 1 51 LYS n 1 52 SER n 1 53 LEU n 1 54 LYS n 1 55 GLN n 1 56 GLY n 1 57 SER n 1 58 MET n 1 59 SER n 1 60 PRO n 1 61 ASP n 1 62 ALA n 1 63 PHE n 1 64 LEU n 1 65 ALA n 1 66 GLU n 1 67 ALA n 1 68 ASN n 1 69 LEU n 1 70 MET n 1 71 LYS n 1 72 GLN n 1 73 LEU n 1 74 GLN n 1 75 HIS n 1 76 GLN n 1 77 ARG n 1 78 LEU n 1 79 VAL n 1 80 ARG n 1 81 LEU n 1 82 TYR n 1 83 ALA n 1 84 VAL n 1 85 VAL n 1 86 THR n 1 87 GLN n 1 88 GLU n 1 89 PRO n 1 90 ILE n 1 91 TYR n 1 92 ILE n 1 93 ILE n 1 94 THR n 1 95 GLU n 1 96 TYR n 1 97 MET n 1 98 GLU n 1 99 ASN n 1 100 GLY n 1 101 SER n 1 102 LEU n 1 103 VAL n 1 104 ASP n 1 105 PHE n 1 106 LEU n 1 107 LYS n 1 108 THR n 1 109 PRO n 1 110 SER n 1 111 GLY n 1 112 ILE n 1 113 LYS n 1 114 LEU n 1 115 THR n 1 116 ILE n 1 117 ASN n 1 118 LYS n 1 119 LEU n 1 120 LEU n 1 121 ASP n 1 122 MET n 1 123 ALA n 1 124 ALA n 1 125 GLN n 1 126 ILE n 1 127 ALA n 1 128 GLU n 1 129 GLY n 1 130 MET n 1 131 ALA n 1 132 PHE n 1 133 ILE n 1 134 GLU n 1 135 GLU n 1 136 ARG n 1 137 ASN n 1 138 TYR n 1 139 ILE n 1 140 HIS n 1 141 ARG n 1 142 ASP n 1 143 LEU n 1 144 ARG n 1 145 ALA n 1 146 ALA n 1 147 ASN n 1 148 ILE n 1 149 LEU n 1 150 VAL n 1 151 SER n 1 152 ASP n 1 153 THR n 1 154 LEU n 1 155 SER n 1 156 CYS n 1 157 LYS n 1 158 ILE n 1 159 ALA n 1 160 ASP n 1 161 PHE n 1 162 GLY n 1 163 LEU n 1 164 ALA n 1 165 ARG n 1 166 LEU n 1 167 ILE n 1 168 GLU n 1 169 ASP n 1 170 ASN n 1 171 GLU n 1 172 PTR n 1 173 THR n 1 174 ALA n 1 175 ARG n 1 176 GLU n 1 177 GLY n 1 178 ALA n 1 179 LYS n 1 180 PHE n 1 181 PRO n 1 182 ILE n 1 183 LYS n 1 184 TRP n 1 185 THR n 1 186 ALA n 1 187 PRO n 1 188 GLU n 1 189 ALA n 1 190 ILE n 1 191 ASN n 1 192 TYR n 1 193 GLY n 1 194 THR n 1 195 PHE n 1 196 THR n 1 197 ILE n 1 198 LYS n 1 199 SER n 1 200 ASP n 1 201 VAL n 1 202 TRP n 1 203 SER n 1 204 PHE n 1 205 GLY n 1 206 ILE n 1 207 LEU n 1 208 LEU n 1 209 THR n 1 210 GLU n 1 211 ILE n 1 212 VAL n 1 213 THR n 1 214 HIS n 1 215 GLY n 1 216 ARG n 1 217 ILE n 1 218 PRO n 1 219 TYR n 1 220 PRO n 1 221 GLY n 1 222 MET n 1 223 THR n 1 224 ASN n 1 225 PRO n 1 226 GLU n 1 227 VAL n 1 228 ILE n 1 229 GLN n 1 230 ASN n 1 231 LEU n 1 232 GLU n 1 233 ARG n 1 234 GLY n 1 235 TYR n 1 236 ARG n 1 237 MET n 1 238 VAL n 1 239 ARG n 1 240 PRO n 1 241 ASP n 1 242 ASN n 1 243 CYS n 1 244 PRO n 1 245 GLU n 1 246 GLU n 1 247 LEU n 1 248 TYR n 1 249 GLN n 1 250 LEU n 1 251 MET n 1 252 ARG n 1 253 LEU n 1 254 CYS n 1 255 TRP n 1 256 LYS n 1 257 GLU n 1 258 ARG n 1 259 PRO n 1 260 GLU n 1 261 ASP n 1 262 ARG n 1 263 PRO n 1 264 THR n 1 265 PHE n 1 266 ASP n 1 267 TYR n 1 268 LEU n 1 269 ARG n 1 270 SER n 1 271 VAL n 1 272 LEU n 1 273 GLU n 1 274 ASP n 1 275 PHE n 1 276 PHE n 1 277 THR n 1 278 ALA n 1 279 THR n 1 280 GLU n 1 281 GLY n 1 282 GLN n 1 283 TYR n 1 284 GLN n 1 285 PRO n 1 286 GLN n 1 287 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LCK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name Baculoviridae _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10442 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Spodoptera frugiperda sf21' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'E. Coli' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBacPAK _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code LCK_HUMAN _struct_ref.db_name UNP _struct_ref.pdbx_db_accession P06239 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 225 _struct_ref.pdbx_seq_one_letter_code ;QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQPQP ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KXZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 287 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06239 _struct_ref_seq.db_align_beg 225 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 509 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 225 _struct_ref_seq.pdbx_auth_seq_align_end 509 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KXZ GLY A 1 ? UNP P06239 ? ? 'expression tag' 223 1 1 3KXZ SER A 2 ? UNP P06239 ? ? 'expression tag' 224 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 925 non-polymer . '3-[7-[(3-hydroxyphenyl)amino]pyrazolo[1,5-a]pyrimidin-2-yl]-N-(1-hydroxy-2,2,6,6-tetramethyl-piperidin-4-yl)benzamide' 'N-(1-hydroxy-2,2,6,6-tetramethylpiperidin-4-yl)-3-(7-(3-hydroxyphenylamino)pyrazolo[1,5-a]pyrimidin-2-yl)benzamide' 'C28 H32 N6 O3' 500.592 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KXZ _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2M Lithium Sulfate, 0.1M bis-tris pH 6.5 , VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2008-12-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.d_resolution_high 2.37 _reflns.entry_id 3KXZ _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_low 37.6 _reflns.number_all 11161 _reflns.number_obs 8910 _reflns.percent_possible_obs 79.48 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 15.5 _reflns.B_iso_Wilson_estimate 23.56 _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.37 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 30 _reflns_shell.Rmerge_I_obs 0.20 _reflns_shell.meanI_over_sigI_obs 3.85 _reflns_shell.pdbx_Rsym_value 0.21 _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.number_unique_all 333 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.37 _refine.ls_percent_reflns_obs 79.48 _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.261 _refine.entry_id 3KXZ _refine.ls_d_res_low 37.6 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 11481 _refine.ls_number_reflns_obs 8910 _refine.ls_number_reflns_R_free 441 _refine.ls_R_factor_all 0.195 _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2139 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 2261 _refine_hist.d_res_high 2.37 _refine_hist.d_res_low 37.6 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg 0.817 ? ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 0.055 ? ? ? 'X-RAY DIFFRACTION' ? f_gen_planes_refined 0.003 ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_1_deg 15.16 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.number_reflns_R_work _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 2.37 2.71 1809 96 0.1961 0.2582 . 52 . . . . . . 'X-RAY DIFFRACTION' 2.71 3.42 3008 152 0.1939 0.2742 . 86 . . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3KXZ _struct.title 'The complex crystal structure of LCK with a probe molecule w259' _struct.pdbx_descriptor 'Proto-oncogene tyrosine-protein kinase LCK (E.C.2.7.10.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KXZ _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;LCK, Acetylation, ATP-binding, Cell membrane, Chromosomal rearrangement, Cytoplasm, Disease mutation, Host-virus interaction, Kinase, Lipoprotein, Membrane, Myristate, Nucleotide-binding, Palmitate, Phosphoprotein, Polymorphism, Proto-oncogene, Transferase, Tyrosine-protein kinase, Structural Genomics, Protein Structure Factory, PSF ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 ? PRO A 60 ? MET A 70 ? PRO A 282 MET A 292 ? ? 11 HELX_P HELX_P2 ? LEU A 102 ? PHE A 105 ? LEU A 324 PHE A 327 ? ? 4 HELX_P HELX_P3 ? PRO A 109 ? ILE A 112 ? PRO A 331 ILE A 334 ? ? 4 HELX_P HELX_P4 ? ILE A 116 ? GLU A 135 ? ILE A 338 GLU A 357 ? ? 20 HELX_P HELX_P5 ? PRO A 187 ? TYR A 192 ? PRO A 409 TYR A 414 ? ? 6 HELX_P HELX_P6 ? ILE A 197 ? VAL A 212 ? ILE A 419 VAL A 434 ? ? 16 HELX_P HELX_P7 ? ASN A 224 ? ARG A 233 ? ASN A 446 ARG A 455 ? ? 10 HELX_P HELX_P8 ? GLU A 245 ? LEU A 253 ? GLU A 467 LEU A 475 ? ? 9 HELX_P HELX_P9 ? PHE A 265 ? THR A 277 ? PHE A 487 THR A 499 ? ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 171 C ? ? ? 1_555 A PTR 172 N ? ? A GLU 393 A PTR 394 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A PTR 172 C ? ? ? 1_555 A THR 173 N ? ? A PTR 394 A THR 395 1_555 ? ? ? ? ? ? ? 1.328 ? metalc1 metalc ? ? A SER 110 OG ? ? ? 1_555 C CA . CA ? ? A SER 332 A CA 3 1_555 ? ? ? ? ? ? ? 3.001 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 88 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 310 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 89 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 311 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? C ? 2 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 23 ? GLY A 30 ? LEU A 245 GLY A 252 A 2 VAL A 37 ? TYR A 42 ? VAL A 259 TYR A 264 A 3 THR A 46 ? SER A 52 ? THR A 268 SER A 274 A 4 LEU A 81 ? VAL A 85 ? LEU A 303 VAL A 307 A 5 TYR A 91 ? THR A 94 ? TYR A 313 THR A 316 C 1 ILE A 148 ? VAL A 150 ? ILE A 370 VAL A 372 C 2 CYS A 156 ? ILE A 158 ? CYS A 378 ILE A 380 D 1 TYR A 138 ? ILE A 139 ? TYR A 360 ILE A 361 D 2 ARG A 165 ? LEU A 166 ? ARG A 387 LEU A 388 E 1 PTR A 172 ? THR A 173 ? PTR A 394 THR A 395 E 2 THR A 194 ? PHE A 195 ? THR A 416 PHE A 417 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 2' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CA A 3' AC3 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE 925 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH E . ? HOH A 63 . ? 1_555 ? 2 AC1 8 GLN A 76 ? GLN A 298 . ? 3_544 ? 3 AC1 8 ARG A 77 ? ARG A 299 . ? 3_544 ? 4 AC1 8 SER A 155 ? SER A 377 . ? 3_544 ? 5 AC1 8 LYS A 157 ? LYS A 379 . ? 3_544 ? 6 AC1 8 TYR A 235 ? TYR A 457 . ? 1_555 ? 7 AC1 8 ARG A 236 ? ARG A 458 . ? 1_555 ? 8 AC1 8 ARG A 252 ? ARG A 474 . ? 1_555 ? 9 AC2 1 SER A 110 ? SER A 332 . ? 1_555 ? 10 AC3 14 HOH E . ? HOH A 20 . ? 1_555 ? 11 AC3 14 HOH E . ? HOH A 26 . ? 1_555 ? 12 AC3 14 GLU A 27 ? GLU A 249 . ? 1_555 ? 13 AC3 14 LEU A 29 ? LEU A 251 . ? 1_555 ? 14 AC3 14 VAL A 37 ? VAL A 259 . ? 1_555 ? 15 AC3 14 ALA A 49 ? ALA A 271 . ? 1_555 ? 16 AC3 14 LYS A 51 ? LYS A 273 . ? 1_555 ? 17 AC3 14 GLU A 66 ? GLU A 288 . ? 1_555 ? 18 AC3 14 THR A 94 ? THR A 316 . ? 1_555 ? 19 AC3 14 GLU A 95 ? GLU A 317 . ? 1_555 ? 20 AC3 14 MET A 97 ? MET A 319 . ? 1_555 ? 21 AC3 14 GLU A 98 ? GLU A 320 . ? 1_555 ? 22 AC3 14 LEU A 149 ? LEU A 371 . ? 1_555 ? 23 AC3 14 ASP A 160 ? ASP A 382 . ? 1_555 ? # _atom_sites.entry_id 3KXZ _atom_sites.fract_transf_matrix[1][1] 0.023803 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013553 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011804 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 223 ? ? ? A . n A 1 2 SER 2 224 ? ? ? A . n A 1 3 GLN 3 225 ? ? ? A . n A 1 4 THR 4 226 ? ? ? A . n A 1 5 GLN 5 227 ? ? ? A . n A 1 6 LYS 6 228 ? ? ? A . n A 1 7 PRO 7 229 ? ? ? A . n A 1 8 GLN 8 230 ? ? ? A . n A 1 9 LYS 9 231 ? ? ? A . n A 1 10 PRO 10 232 ? ? ? A . n A 1 11 TRP 11 233 ? ? ? A . n A 1 12 TRP 12 234 ? ? ? A . n A 1 13 GLU 13 235 ? ? ? A . n A 1 14 ASP 14 236 ? ? ? A . n A 1 15 GLU 15 237 ? ? ? A . n A 1 16 TRP 16 238 238 TRP TRP A . n A 1 17 GLU 17 239 239 GLU GLU A . n A 1 18 VAL 18 240 240 VAL VAL A . n A 1 19 PRO 19 241 241 PRO PRO A . n A 1 20 ARG 20 242 242 ARG ARG A . n A 1 21 GLU 21 243 243 GLU GLU A . n A 1 22 THR 22 244 244 THR THR A . n A 1 23 LEU 23 245 245 LEU LEU A . n A 1 24 LYS 24 246 246 LYS LYS A . n A 1 25 LEU 25 247 247 LEU LEU A . n A 1 26 VAL 26 248 248 VAL VAL A . n A 1 27 GLU 27 249 249 GLU GLU A . n A 1 28 ARG 28 250 250 ARG ARG A . n A 1 29 LEU 29 251 251 LEU LEU A . n A 1 30 GLY 30 252 252 GLY GLY A . n A 1 31 ALA 31 253 253 ALA ALA A . n A 1 32 GLY 32 254 254 GLY GLY A . n A 1 33 GLN 33 255 255 GLN GLN A . n A 1 34 PHE 34 256 256 PHE PHE A . n A 1 35 GLY 35 257 257 GLY GLY A . n A 1 36 GLU 36 258 258 GLU GLU A . n A 1 37 VAL 37 259 259 VAL VAL A . n A 1 38 TRP 38 260 260 TRP TRP A . n A 1 39 MET 39 261 261 MET MET A . n A 1 40 GLY 40 262 262 GLY GLY A . n A 1 41 TYR 41 263 263 TYR TYR A . n A 1 42 TYR 42 264 264 TYR TYR A . n A 1 43 ASN 43 265 265 ASN ASN A . n A 1 44 GLY 44 266 266 GLY GLY A . n A 1 45 HIS 45 267 267 HIS HIS A . n A 1 46 THR 46 268 268 THR THR A . n A 1 47 LYS 47 269 269 LYS LYS A . n A 1 48 VAL 48 270 270 VAL VAL A . n A 1 49 ALA 49 271 271 ALA ALA A . n A 1 50 VAL 50 272 272 VAL VAL A . n A 1 51 LYS 51 273 273 LYS LYS A . n A 1 52 SER 52 274 274 SER SER A . n A 1 53 LEU 53 275 275 LEU LEU A . n A 1 54 LYS 54 276 276 LYS LYS A . n A 1 55 GLN 55 277 277 GLN GLN A . n A 1 56 GLY 56 278 278 GLY GLY A . n A 1 57 SER 57 279 279 SER SER A . n A 1 58 MET 58 280 280 MET MET A . n A 1 59 SER 59 281 281 SER SER A . n A 1 60 PRO 60 282 282 PRO PRO A . n A 1 61 ASP 61 283 283 ASP ASP A . n A 1 62 ALA 62 284 284 ALA ALA A . n A 1 63 PHE 63 285 285 PHE PHE A . n A 1 64 LEU 64 286 286 LEU LEU A . n A 1 65 ALA 65 287 287 ALA ALA A . n A 1 66 GLU 66 288 288 GLU GLU A . n A 1 67 ALA 67 289 289 ALA ALA A . n A 1 68 ASN 68 290 290 ASN ASN A . n A 1 69 LEU 69 291 291 LEU LEU A . n A 1 70 MET 70 292 292 MET MET A . n A 1 71 LYS 71 293 293 LYS LYS A . n A 1 72 GLN 72 294 294 GLN GLN A . n A 1 73 LEU 73 295 295 LEU LEU A . n A 1 74 GLN 74 296 296 GLN GLN A . n A 1 75 HIS 75 297 297 HIS HIS A . n A 1 76 GLN 76 298 298 GLN GLN A . n A 1 77 ARG 77 299 299 ARG ARG A . n A 1 78 LEU 78 300 300 LEU LEU A . n A 1 79 VAL 79 301 301 VAL VAL A . n A 1 80 ARG 80 302 302 ARG ARG A . n A 1 81 LEU 81 303 303 LEU LEU A . n A 1 82 TYR 82 304 304 TYR TYR A . n A 1 83 ALA 83 305 305 ALA ALA A . n A 1 84 VAL 84 306 306 VAL VAL A . n A 1 85 VAL 85 307 307 VAL VAL A . n A 1 86 THR 86 308 308 THR THR A . n A 1 87 GLN 87 309 309 GLN GLN A . n A 1 88 GLU 88 310 310 GLU GLU A . n A 1 89 PRO 89 311 311 PRO PRO A . n A 1 90 ILE 90 312 312 ILE ILE A . n A 1 91 TYR 91 313 313 TYR TYR A . n A 1 92 ILE 92 314 314 ILE ILE A . n A 1 93 ILE 93 315 315 ILE ILE A . n A 1 94 THR 94 316 316 THR THR A . n A 1 95 GLU 95 317 317 GLU GLU A . n A 1 96 TYR 96 318 318 TYR TYR A . n A 1 97 MET 97 319 319 MET MET A . n A 1 98 GLU 98 320 320 GLU GLU A . n A 1 99 ASN 99 321 321 ASN ASN A . n A 1 100 GLY 100 322 322 GLY GLY A . n A 1 101 SER 101 323 323 SER SER A . n A 1 102 LEU 102 324 324 LEU LEU A . n A 1 103 VAL 103 325 325 VAL VAL A . n A 1 104 ASP 104 326 326 ASP ASP A . n A 1 105 PHE 105 327 327 PHE PHE A . n A 1 106 LEU 106 328 328 LEU LEU A . n A 1 107 LYS 107 329 329 LYS LYS A . n A 1 108 THR 108 330 330 THR THR A . n A 1 109 PRO 109 331 331 PRO PRO A . n A 1 110 SER 110 332 332 SER SER A . n A 1 111 GLY 111 333 333 GLY GLY A . n A 1 112 ILE 112 334 334 ILE ILE A . n A 1 113 LYS 113 335 335 LYS LYS A . n A 1 114 LEU 114 336 336 LEU LEU A . n A 1 115 THR 115 337 337 THR THR A . n A 1 116 ILE 116 338 338 ILE ILE A . n A 1 117 ASN 117 339 339 ASN ASN A . n A 1 118 LYS 118 340 340 LYS LYS A . n A 1 119 LEU 119 341 341 LEU LEU A . n A 1 120 LEU 120 342 342 LEU LEU A . n A 1 121 ASP 121 343 343 ASP ASP A . n A 1 122 MET 122 344 344 MET MET A . n A 1 123 ALA 123 345 345 ALA ALA A . n A 1 124 ALA 124 346 346 ALA ALA A . n A 1 125 GLN 125 347 347 GLN GLN A . n A 1 126 ILE 126 348 348 ILE ILE A . n A 1 127 ALA 127 349 349 ALA ALA A . n A 1 128 GLU 128 350 350 GLU GLU A . n A 1 129 GLY 129 351 351 GLY GLY A . n A 1 130 MET 130 352 352 MET MET A . n A 1 131 ALA 131 353 353 ALA ALA A . n A 1 132 PHE 132 354 354 PHE PHE A . n A 1 133 ILE 133 355 355 ILE ILE A . n A 1 134 GLU 134 356 356 GLU GLU A . n A 1 135 GLU 135 357 357 GLU GLU A . n A 1 136 ARG 136 358 358 ARG ARG A . n A 1 137 ASN 137 359 359 ASN ASN A . n A 1 138 TYR 138 360 360 TYR TYR A . n A 1 139 ILE 139 361 361 ILE ILE A . n A 1 140 HIS 140 362 362 HIS HIS A . n A 1 141 ARG 141 363 363 ARG ARG A . n A 1 142 ASP 142 364 364 ASP ASP A . n A 1 143 LEU 143 365 365 LEU LEU A . n A 1 144 ARG 144 366 366 ARG ARG A . n A 1 145 ALA 145 367 367 ALA ALA A . n A 1 146 ALA 146 368 368 ALA ALA A . n A 1 147 ASN 147 369 369 ASN ASN A . n A 1 148 ILE 148 370 370 ILE ILE A . n A 1 149 LEU 149 371 371 LEU LEU A . n A 1 150 VAL 150 372 372 VAL VAL A . n A 1 151 SER 151 373 373 SER SER A . n A 1 152 ASP 152 374 374 ASP ASP A . n A 1 153 THR 153 375 375 THR THR A . n A 1 154 LEU 154 376 376 LEU LEU A . n A 1 155 SER 155 377 377 SER SER A . n A 1 156 CYS 156 378 378 CYS CYS A . n A 1 157 LYS 157 379 379 LYS LYS A . n A 1 158 ILE 158 380 380 ILE ILE A . n A 1 159 ALA 159 381 381 ALA ALA A . n A 1 160 ASP 160 382 382 ASP ASP A . n A 1 161 PHE 161 383 383 PHE PHE A . n A 1 162 GLY 162 384 384 GLY GLY A . n A 1 163 LEU 163 385 385 LEU LEU A . n A 1 164 ALA 164 386 386 ALA ALA A . n A 1 165 ARG 165 387 387 ARG ARG A . n A 1 166 LEU 166 388 388 LEU LEU A . n A 1 167 ILE 167 389 389 ILE ILE A . n A 1 168 GLU 168 390 390 GLU GLU A . n A 1 169 ASP 169 391 391 ASP ASP A . n A 1 170 ASN 170 392 392 ASN ASN A . n A 1 171 GLU 171 393 393 GLU GLU A . n A 1 172 PTR 172 394 394 PTR PTR A . n A 1 173 THR 173 395 395 THR THR A . n A 1 174 ALA 174 396 396 ALA ALA A . n A 1 175 ARG 175 397 397 ARG ARG A . n A 1 176 GLU 176 398 398 GLU GLU A . n A 1 177 GLY 177 399 399 GLY GLY A . n A 1 178 ALA 178 400 400 ALA ALA A . n A 1 179 LYS 179 401 401 LYS LYS A . n A 1 180 PHE 180 402 402 PHE PHE A . n A 1 181 PRO 181 403 403 PRO PRO A . n A 1 182 ILE 182 404 404 ILE ILE A . n A 1 183 LYS 183 405 405 LYS LYS A . n A 1 184 TRP 184 406 406 TRP TRP A . n A 1 185 THR 185 407 407 THR THR A . n A 1 186 ALA 186 408 408 ALA ALA A . n A 1 187 PRO 187 409 409 PRO PRO A . n A 1 188 GLU 188 410 410 GLU GLU A . n A 1 189 ALA 189 411 411 ALA ALA A . n A 1 190 ILE 190 412 412 ILE ILE A . n A 1 191 ASN 191 413 413 ASN ASN A . n A 1 192 TYR 192 414 414 TYR TYR A . n A 1 193 GLY 193 415 415 GLY GLY A . n A 1 194 THR 194 416 416 THR THR A . n A 1 195 PHE 195 417 417 PHE PHE A . n A 1 196 THR 196 418 418 THR THR A . n A 1 197 ILE 197 419 419 ILE ILE A . n A 1 198 LYS 198 420 420 LYS LYS A . n A 1 199 SER 199 421 421 SER SER A . n A 1 200 ASP 200 422 422 ASP ASP A . n A 1 201 VAL 201 423 423 VAL VAL A . n A 1 202 TRP 202 424 424 TRP TRP A . n A 1 203 SER 203 425 425 SER SER A . n A 1 204 PHE 204 426 426 PHE PHE A . n A 1 205 GLY 205 427 427 GLY GLY A . n A 1 206 ILE 206 428 428 ILE ILE A . n A 1 207 LEU 207 429 429 LEU LEU A . n A 1 208 LEU 208 430 430 LEU LEU A . n A 1 209 THR 209 431 431 THR THR A . n A 1 210 GLU 210 432 432 GLU GLU A . n A 1 211 ILE 211 433 433 ILE ILE A . n A 1 212 VAL 212 434 434 VAL VAL A . n A 1 213 THR 213 435 435 THR THR A . n A 1 214 HIS 214 436 436 HIS HIS A . n A 1 215 GLY 215 437 437 GLY GLY A . n A 1 216 ARG 216 438 438 ARG ARG A . n A 1 217 ILE 217 439 439 ILE ILE A . n A 1 218 PRO 218 440 440 PRO PRO A . n A 1 219 TYR 219 441 441 TYR TYR A . n A 1 220 PRO 220 442 442 PRO PRO A . n A 1 221 GLY 221 443 443 GLY GLY A . n A 1 222 MET 222 444 444 MET MET A . n A 1 223 THR 223 445 445 THR THR A . n A 1 224 ASN 224 446 446 ASN ASN A . n A 1 225 PRO 225 447 447 PRO PRO A . n A 1 226 GLU 226 448 448 GLU GLU A . n A 1 227 VAL 227 449 449 VAL VAL A . n A 1 228 ILE 228 450 450 ILE ILE A . n A 1 229 GLN 229 451 451 GLN GLN A . n A 1 230 ASN 230 452 452 ASN ASN A . n A 1 231 LEU 231 453 453 LEU LEU A . n A 1 232 GLU 232 454 454 GLU GLU A . n A 1 233 ARG 233 455 455 ARG ARG A . n A 1 234 GLY 234 456 456 GLY GLY A . n A 1 235 TYR 235 457 457 TYR TYR A . n A 1 236 ARG 236 458 458 ARG ARG A . n A 1 237 MET 237 459 459 MET MET A . n A 1 238 VAL 238 460 460 VAL VAL A . n A 1 239 ARG 239 461 461 ARG ARG A . n A 1 240 PRO 240 462 462 PRO PRO A . n A 1 241 ASP 241 463 463 ASP ASP A . n A 1 242 ASN 242 464 464 ASN ASN A . n A 1 243 CYS 243 465 465 CYS CYS A . n A 1 244 PRO 244 466 466 PRO PRO A . n A 1 245 GLU 245 467 467 GLU GLU A . n A 1 246 GLU 246 468 468 GLU GLU A . n A 1 247 LEU 247 469 469 LEU LEU A . n A 1 248 TYR 248 470 470 TYR TYR A . n A 1 249 GLN 249 471 471 GLN GLN A . n A 1 250 LEU 250 472 472 LEU LEU A . n A 1 251 MET 251 473 473 MET MET A . n A 1 252 ARG 252 474 474 ARG ARG A . n A 1 253 LEU 253 475 475 LEU LEU A . n A 1 254 CYS 254 476 476 CYS CYS A . n A 1 255 TRP 255 477 477 TRP TRP A . n A 1 256 LYS 256 478 478 LYS LYS A . n A 1 257 GLU 257 479 479 GLU GLU A . n A 1 258 ARG 258 480 480 ARG ARG A . n A 1 259 PRO 259 481 481 PRO PRO A . n A 1 260 GLU 260 482 482 GLU GLU A . n A 1 261 ASP 261 483 483 ASP ASP A . n A 1 262 ARG 262 484 484 ARG ARG A . n A 1 263 PRO 263 485 485 PRO PRO A . n A 1 264 THR 264 486 486 THR THR A . n A 1 265 PHE 265 487 487 PHE PHE A . n A 1 266 ASP 266 488 488 ASP ASP A . n A 1 267 TYR 267 489 489 TYR TYR A . n A 1 268 LEU 268 490 490 LEU LEU A . n A 1 269 ARG 269 491 491 ARG ARG A . n A 1 270 SER 270 492 492 SER SER A . n A 1 271 VAL 271 493 493 VAL VAL A . n A 1 272 LEU 272 494 494 LEU LEU A . n A 1 273 GLU 273 495 495 GLU GLU A . n A 1 274 ASP 274 496 496 ASP ASP A . n A 1 275 PHE 275 497 497 PHE PHE A . n A 1 276 PHE 276 498 498 PHE PHE A . n A 1 277 THR 277 499 499 THR THR A . n A 1 278 ALA 278 500 500 ALA ALA A . n A 1 279 THR 279 501 501 THR THR A . n A 1 280 GLU 280 502 ? ? ? A . n A 1 281 GLY 281 503 ? ? ? A . n A 1 282 GLN 282 504 ? ? ? A . n A 1 283 TYR 283 505 ? ? ? A . n A 1 284 GLN 284 506 ? ? ? A . n A 1 285 PRO 285 507 ? ? ? A . n A 1 286 GLN 286 508 ? ? ? A . n A 1 287 PRO 287 509 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Protein Structure Factory' _pdbx_SG_project.initial_of_center PSF # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 172 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 394 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-23 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement . ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 17 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 29 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 29 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 30 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_554 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 277 ? ? -50.32 91.45 2 1 GLU A 317 ? ? -34.77 146.06 3 1 ARG A 363 ? ? 75.70 -0.73 4 1 ASP A 364 ? ? -141.45 36.07 5 1 ASP A 382 ? ? 62.44 72.38 6 1 ASP A 391 ? ? -105.62 41.91 7 1 ASN A 392 ? ? 74.45 -36.46 8 1 PRO A 403 ? ? -59.67 101.60 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 223 ? A GLY 1 2 1 Y 1 A SER 224 ? A SER 2 3 1 Y 1 A GLN 225 ? A GLN 3 4 1 Y 1 A THR 226 ? A THR 4 5 1 Y 1 A GLN 227 ? A GLN 5 6 1 Y 1 A LYS 228 ? A LYS 6 7 1 Y 1 A PRO 229 ? A PRO 7 8 1 Y 1 A GLN 230 ? A GLN 8 9 1 Y 1 A LYS 231 ? A LYS 9 10 1 Y 1 A PRO 232 ? A PRO 10 11 1 Y 1 A TRP 233 ? A TRP 11 12 1 Y 1 A TRP 234 ? A TRP 12 13 1 Y 1 A GLU 235 ? A GLU 13 14 1 Y 1 A ASP 236 ? A ASP 14 15 1 Y 1 A GLU 237 ? A GLU 15 16 1 Y 1 A GLU 502 ? A GLU 280 17 1 Y 1 A GLY 503 ? A GLY 281 18 1 Y 1 A GLN 504 ? A GLN 282 19 1 Y 1 A TYR 505 ? A TYR 283 20 1 Y 1 A GLN 506 ? A GLN 284 21 1 Y 1 A PRO 507 ? A PRO 285 22 1 Y 1 A GLN 508 ? A GLN 286 23 1 Y 1 A PRO 509 ? A PRO 287 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CALCIUM ION' CA 4 '3-[7-[(3-hydroxyphenyl)amino]pyrazolo[1,5-a]pyrimidin-2-yl]-N-(1-hydroxy-2,2,6,6-tetramethyl-piperidin-4-yl)benzamide' 925 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 2 2 SO4 SO4 A . C 3 CA 1 3 3 CA CA A . D 4 925 1 1 1 925 925 A . E 5 HOH 1 4 4 HOH HOH A . E 5 HOH 2 5 5 HOH HOH A . E 5 HOH 3 6 6 HOH HOH A . E 5 HOH 4 7 7 HOH HOH A . E 5 HOH 5 8 8 HOH HOH A . E 5 HOH 6 9 9 HOH HOH A . E 5 HOH 7 10 10 HOH HOH A . E 5 HOH 8 11 11 HOH HOH A . E 5 HOH 9 12 12 HOH HOH A . E 5 HOH 10 13 13 HOH HOH A . E 5 HOH 11 14 14 HOH HOH A . E 5 HOH 12 15 15 HOH HOH A . E 5 HOH 13 16 16 HOH HOH A . E 5 HOH 14 17 17 HOH HOH A . E 5 HOH 15 18 18 HOH HOH A . E 5 HOH 16 19 19 HOH HOH A . E 5 HOH 17 20 20 HOH HOH A . E 5 HOH 18 21 21 HOH HOH A . E 5 HOH 19 22 22 HOH HOH A . E 5 HOH 20 23 23 HOH HOH A . E 5 HOH 21 24 24 HOH HOH A . E 5 HOH 22 25 25 HOH HOH A . E 5 HOH 23 26 26 HOH HOH A . E 5 HOH 24 27 27 HOH HOH A . E 5 HOH 25 28 28 HOH HOH A . E 5 HOH 26 29 29 HOH HOH A . E 5 HOH 27 30 30 HOH HOH A . E 5 HOH 28 31 31 HOH HOH A . E 5 HOH 29 32 32 HOH HOH A . E 5 HOH 30 33 33 HOH HOH A . E 5 HOH 31 34 34 HOH HOH A . E 5 HOH 32 35 35 HOH HOH A . E 5 HOH 33 36 36 HOH HOH A . E 5 HOH 34 37 37 HOH HOH A . E 5 HOH 35 38 38 HOH HOH A . E 5 HOH 36 39 39 HOH HOH A . E 5 HOH 37 40 40 HOH HOH A . E 5 HOH 38 41 41 HOH HOH A . E 5 HOH 39 42 42 HOH HOH A . E 5 HOH 40 43 43 HOH HOH A . E 5 HOH 41 44 44 HOH HOH A . E 5 HOH 42 45 45 HOH HOH A . E 5 HOH 43 46 46 HOH HOH A . E 5 HOH 44 47 47 HOH HOH A . E 5 HOH 45 48 48 HOH HOH A . E 5 HOH 46 49 49 HOH HOH A . E 5 HOH 47 50 50 HOH HOH A . E 5 HOH 48 51 51 HOH HOH A . E 5 HOH 49 52 52 HOH HOH A . E 5 HOH 50 53 53 HOH HOH A . E 5 HOH 51 54 54 HOH HOH A . E 5 HOH 52 55 55 HOH HOH A . E 5 HOH 53 56 56 HOH HOH A . E 5 HOH 54 57 57 HOH HOH A . E 5 HOH 55 58 58 HOH HOH A . E 5 HOH 56 59 59 HOH HOH A . E 5 HOH 57 60 60 HOH HOH A . E 5 HOH 58 61 61 HOH HOH A . E 5 HOH 59 62 62 HOH HOH A . E 5 HOH 60 63 63 HOH HOH A . E 5 HOH 61 64 64 HOH HOH A . E 5 HOH 62 65 65 HOH HOH A . E 5 HOH 63 66 66 HOH HOH A . E 5 HOH 64 67 67 HOH HOH A . E 5 HOH 65 68 68 HOH HOH A . E 5 HOH 66 69 69 HOH HOH A . E 5 HOH 67 70 70 HOH HOH A . E 5 HOH 68 71 71 HOH HOH A . E 5 HOH 69 72 72 HOH HOH A . E 5 HOH 70 73 73 HOH HOH A . E 5 HOH 71 74 74 HOH HOH A . E 5 HOH 72 75 75 HOH HOH A . E 5 HOH 73 76 76 HOH HOH A . E 5 HOH 74 77 77 HOH HOH A . E 5 HOH 75 78 78 HOH HOH A . E 5 HOH 76 79 79 HOH HOH A . E 5 HOH 77 80 80 HOH HOH A . E 5 HOH 78 81 81 HOH HOH A . E 5 HOH 79 82 82 HOH HOH A . #