data_3L0U # _entry.id 3L0U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L0U pdb_00003l0u 10.2210/pdb3l0u/pdb NDB NA0391 ? ? RCSB RCSB056690 ? ? WWPDB D_1000056690 ? ? # _pdbx_database_status.entry_id 3L0U _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-12-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Byrne, R.T.' 1 ? 'Konevega, A.L.' 2 ? 'Rodnina, M.V.' 3 ? 'Antson, A.A.' 4 ? # _citation.id primary _citation.title 'The crystal structure of unmodified tRNAPhe from Escherichia coli' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 4154 _citation.page_last 4162 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20203084 _citation.pdbx_database_id_DOI 10.1093/nar/gkq133 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Byrne, R.T.' 1 ? primary 'Konevega, A.L.' 2 ? primary 'Rodnina, M.V.' 3 ? primary 'Antson, A.A.' 4 ? # _cell.length_a 99.450 _cell.length_b 99.450 _cell.length_c 110.330 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3L0U _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.entry_id 3L0U _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 180 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Unmodified tRNAPhe' 24485.539 1 ? 'C3G, G70C' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGCGCACCA _entity_poly.pdbx_seq_one_letter_code_can GCGCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGCGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 G n 1 29 G n 1 30 G n 1 31 A n 1 32 U n 1 33 U n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 A n 1 39 U n 1 40 C n 1 41 C n 1 42 C n 1 43 C n 1 44 G n 1 45 U n 1 46 G n 1 47 U n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 G n 1 53 G n 1 54 U n 1 55 U n 1 56 C n 1 57 G n 1 58 A n 1 59 U n 1 60 U n 1 61 C n 1 62 C n 1 63 G n 1 64 A n 1 65 G n 1 66 U n 1 67 C n 1 68 C n 1 69 G n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Escherichia coli K12' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 83333 _pdbx_entity_src_syn.details 'In vitro synthesis by T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP001637 _struct_ref.pdbx_db_accession CP001637.1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA _struct_ref.pdbx_align_begin 4151955 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L0U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession CP001637.1 _struct_ref_seq.db_align_beg 4151955 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 4152030 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3L0U G A 3 ? GB CP001637.1 C 4151957 'engineered mutation' 3 1 1 3L0U C A 70 ? GB CP001637.1 G 4152024 'engineered mutation' 70 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.crystals_number 1 _exptl.entry_id 3L0U _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.22 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 61.76 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.3M KCL, 0.1M Hepes pH 7.5, 35% v/v MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-03-08 _diffrn_detector.details 'Kirkpatrick Baez bimorph mirror pair for horizontal and vertical focussing.' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal Si(111).' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9704 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9704 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 # _reflns.entry_id 3L0U _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 3.00 _reflns.d_resolution_low 46.45 _reflns.number_all ? _reflns.number_obs 6886 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.B_iso_Wilson_estimate 70.9 _reflns.pdbx_redundancy 15.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.244 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 16.4 _reflns_shell.number_unique_all 971 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3L0U _refine.ls_d_res_high 3.000 _refine.ls_d_res_low 40.120 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.710 _refine.ls_number_reflns_obs 6865 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. B VALUES ARE TOTAL B VALUES (THE SUM OF THE RESIDUAL AND TLS CONTRIBUTIONS).' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_R_work 0.226 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.261 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 312 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 88.217 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.887 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 1.678 _refine.pdbx_overall_ESU_R_Free 0.390 _refine.overall_SU_ML 0.305 _refine.overall_SU_B 35.836 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1EHZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 144.84 _refine.B_iso_min 27.96 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1561 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1573 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 40.120 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1749 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 601 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2729 0.761 3.000 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1566 0.696 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 365 0.050 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 757 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 162 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1749 0.259 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2729 0.447 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 3.000 _refine_ls_shell.d_res_low 3.078 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.800 _refine_ls_shell.number_reflns_R_work 475 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.R_factor_R_free 0.236 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 490 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 3L0U _struct.title 'The crystal structure of unmodified tRNAPhe from Escherichia coli' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L0U _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'transfer RNA, tRNA, transcript, unmodified, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 7 OP1 ? ? ? 1_555 C MG . MG ? ? A A 7 A MG 78 1_555 ? ? ? ? ? ? ? 2.893 ? ? metalc2 metalc ? ? A A 14 OP2 ? ? ? 1_555 C MG . MG ? ? A A 14 A MG 78 1_555 ? ? ? ? ? ? ? 2.486 ? ? metalc3 metalc ? ? A G 24 O6 ? ? ? 1_555 D K . K ? ? A G 24 A K 79 1_555 ? ? ? ? ? ? ? 3.456 ? ? metalc4 metalc ? ? A G 44 O6 ? ? ? 1_555 D K . K ? ? A G 44 A K 79 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 80 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 81 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 82 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 83 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 84 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc10 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 77 A HOH 85 1_555 ? ? ? ? ? ? ? 2.120 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 7 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 7 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 44 N2 ? ? A G 10 A G 44 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 44 N1 ? ? A G 10 A G 44 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog37 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog38 hydrog ? ? A G 18 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 18 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog40 hydrog ? ? A G 22 N7 ? ? ? 1_555 A G 46 N1 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A G 46 N2 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 25 A G 44 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog43 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 31 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 32 O2 ? ? ? 1_555 A A 38 N6 ? ? A U 32 A A 38 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog58 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 63 O6 ? ? A U 51 A G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 63 N1 ? ? A U 51 A G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog66 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 54 N3 ? ? ? 1_555 A A 58 N7 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog70 hydrog ? ? A U 54 O2 ? ? ? 1_555 A A 58 N6 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 77 ? 6 'BINDING SITE FOR RESIDUE MG A 77' AC2 Software A MG 78 ? 3 'BINDING SITE FOR RESIDUE MG A 78' AC3 Software A K 79 ? 5 'BINDING SITE FOR RESIDUE K A 79' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 U A 12 ? U A 12 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 80 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 81 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 82 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 83 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 84 . ? 1_555 ? 7 AC2 3 G A 6 ? G A 6 . ? 1_555 ? 8 AC2 3 A A 7 ? A A 7 . ? 1_555 ? 9 AC2 3 A A 14 ? A A 14 . ? 1_555 ? 10 AC3 5 A A 9 ? A A 9 . ? 1_555 ? 11 AC3 5 A A 23 ? A A 23 . ? 1_555 ? 12 AC3 5 G A 24 ? G A 24 . ? 1_555 ? 13 AC3 5 C A 25 ? C A 25 . ? 1_555 ? 14 AC3 5 G A 44 ? G A 44 . ? 1_555 ? # _atom_sites.entry_id 3L0U _atom_sites.fract_transf_matrix[1][1] 0.010055 _atom_sites.fract_transf_matrix[1][2] 0.005805 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011611 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009064 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 U 32 32 32 U U A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 U 39 39 39 U U A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 C 49 49 49 C C A . n A 1 50 U 50 50 50 U U A . n A 1 51 U 51 51 51 U U A . n A 1 52 G 52 52 52 G G A . n A 1 53 G 53 53 53 G G A . n A 1 54 U 54 54 54 U U A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n A 1 57 G 57 57 57 G G A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 U 60 60 60 U U A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 G 63 63 63 G G A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 C 67 67 67 C C A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 ? ? ? A . n A 1 75 C 75 75 ? ? ? A . n A 1 76 A 76 76 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 77 1 MG MG A . C 2 MG 1 78 2 MG MG A . D 3 K 1 79 3 K K A . E 4 HOH 1 80 9000 HOH HOH A . E 4 HOH 2 81 9000 HOH HOH A . E 4 HOH 3 82 9000 HOH HOH A . E 4 HOH 4 83 9000 HOH HOH A . E 4 HOH 5 84 9000 HOH HOH A . E 4 HOH 6 85 9000 HOH HOH A . E 4 HOH 7 86 1 HOH HOH A . E 4 HOH 8 87 2 HOH HOH A . E 4 HOH 9 88 3 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? C MG . ? A MG 78 ? 1_555 OP2 ? A A 14 ? A A 14 ? 1_555 110.4 ? 2 O6 ? A G 24 ? A G 24 ? 1_555 K ? D K . ? A K 79 ? 1_555 O6 ? A G 44 ? A G 44 ? 1_555 98.9 ? 3 O ? E HOH . ? A HOH 80 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 81 ? 1_555 179.0 ? 4 O ? E HOH . ? A HOH 80 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 82 ? 1_555 89.9 ? 5 O ? E HOH . ? A HOH 81 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 82 ? 1_555 90.5 ? 6 O ? E HOH . ? A HOH 80 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 83 ? 1_555 89.8 ? 7 O ? E HOH . ? A HOH 81 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 83 ? 1_555 89.8 ? 8 O ? E HOH . ? A HOH 82 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 83 ? 1_555 178.6 ? 9 O ? E HOH . ? A HOH 80 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 84 ? 1_555 89.2 ? 10 O ? E HOH . ? A HOH 81 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 84 ? 1_555 89.9 ? 11 O ? E HOH . ? A HOH 82 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 84 ? 1_555 89.7 ? 12 O ? E HOH . ? A HOH 83 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 84 ? 1_555 88.9 ? 13 O ? E HOH . ? A HOH 80 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 85 ? 1_555 91.7 ? 14 O ? E HOH . ? A HOH 81 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 85 ? 1_555 89.2 ? 15 O ? E HOH . ? A HOH 82 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 85 ? 1_555 88.2 ? 16 O ? E HOH . ? A HOH 83 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 85 ? 1_555 93.1 ? 17 O ? E HOH . ? A HOH 84 ? 1_555 MG ? B MG . ? A MG 77 ? 1_555 O ? E HOH . ? A HOH 85 ? 1_555 177.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-12 4 'Structure model' 1 3 2019-12-25 5 'Structure model' 1 4 2021-11-10 6 'Structure model' 1 5 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_entity_src_syn 2 4 'Structure model' pdbx_unobs_or_zero_occ_residues 3 4 'Structure model' reflns_shell 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' pdbx_unobs_or_zero_occ_residues 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.details' 2 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 4 'Structure model' '_reflns_shell.Rmerge_I_obs' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.value' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_ref_seq_dif.details' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.0525 _pdbx_refine_tls.origin_y -26.7749 _pdbx_refine_tls.origin_z 3.7635 _pdbx_refine_tls.T[1][1] 0.1125 _pdbx_refine_tls.T[2][2] 0.0891 _pdbx_refine_tls.T[3][3] 0.2110 _pdbx_refine_tls.T[1][2] -0.0128 _pdbx_refine_tls.T[1][3] -0.0029 _pdbx_refine_tls.T[2][3] -0.0749 _pdbx_refine_tls.L[1][1] 3.9977 _pdbx_refine_tls.L[2][2] 2.6517 _pdbx_refine_tls.L[3][3] 1.7031 _pdbx_refine_tls.L[1][2] 2.6190 _pdbx_refine_tls.L[1][3] -0.9371 _pdbx_refine_tls.L[2][3] -0.6019 _pdbx_refine_tls.S[1][1] -0.2880 _pdbx_refine_tls.S[2][2] 0.1432 _pdbx_refine_tls.S[3][3] 0.1448 _pdbx_refine_tls.S[1][2] 0.0895 _pdbx_refine_tls.S[1][3] -0.7238 _pdbx_refine_tls.S[2][3] -0.3761 _pdbx_refine_tls.S[2][1] -0.4218 _pdbx_refine_tls.S[3][1] 0.1063 _pdbx_refine_tls.S[3][2] -0.0835 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 73 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.5.0088 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.479 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.128 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 74 ? A C 74 2 1 Y 1 A C 75 ? A C 75 3 1 Y 1 A A 76 ? A A 76 4 1 N 0 A HOH 85 ? E HOH ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3L0U 'double helix' 3L0U 'a-form double helix' 3L0U 'parallel strands' 3L0U 'hairpin loop' 3L0U 'mismatched base pair' 3L0U 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.161 -0.154 0.132 -4.144 -6.067 -4.098 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 -0.411 0.003 0.120 1.801 -10.993 2.363 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A C 70 1_555 -0.253 0.022 -0.013 -2.739 -13.699 5.880 3 A_G3:C70_A A 3 ? A 70 ? 19 1 1 A C 4 1_555 A G 69 1_555 -0.053 -0.181 -0.088 6.260 -19.029 3.963 4 A_C4:G69_A A 4 ? A 69 ? 19 1 1 A G 5 1_555 A C 68 1_555 -0.307 -0.151 0.254 -1.772 -6.497 1.081 5 A_G5:C68_A A 5 ? A 68 ? 19 1 1 A G 6 1_555 A C 67 1_555 0.369 0.065 -0.146 -12.989 -15.116 4.507 6 A_G6:C67_A A 6 ? A 67 ? 19 1 1 A A 7 1_555 A U 66 1_555 -0.104 -0.174 0.122 4.325 2.483 -3.317 7 A_A7:U66_A A 7 ? A 66 ? 20 1 1 A C 49 1_555 A G 65 1_555 -0.039 -0.119 -0.107 6.084 -5.886 -3.683 8 A_C49:G65_A A 49 ? A 65 ? 19 1 1 A U 50 1_555 A A 64 1_555 -0.204 -0.077 0.052 -0.605 -2.480 -4.501 9 A_U50:A64_A A 50 ? A 64 ? 20 1 1 A U 51 1_555 A G 63 1_555 1.867 -0.127 0.125 6.345 3.019 3.483 10 A_U51:G63_A A 51 ? A 63 ? 28 1 1 A G 52 1_555 A C 62 1_555 0.013 0.066 -0.469 -10.338 -23.702 -8.565 11 A_G52:C62_A A 52 ? A 62 ? ? 1 1 A G 53 1_555 A C 61 1_555 0.361 0.020 0.101 -11.994 -8.762 4.401 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A U 54 1_555 A A 58 1_555 4.496 -2.353 0.146 -1.444 6.303 -96.197 13 A_U54:A58_A A 54 ? A 58 ? 24 4 1 A U 55 1_555 A G 18 1_555 0.573 -5.761 0.404 27.409 22.374 -89.199 14 A_U55:G18_A A 55 ? A 18 ? ? 2 1 A G 10 1_555 A C 25 1_555 -0.950 -0.301 -0.181 -10.558 -10.079 -0.657 15 A_G10:C25_A A 10 ? A 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 0.718 -0.290 0.305 -17.648 -10.908 -2.121 16 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 0.324 -0.079 0.324 -8.338 -3.365 -7.165 17 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.268 -0.205 0.163 6.363 -7.722 -5.575 18 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.239 -1.922 0.444 2.163 10.454 -102.525 19 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 48 1_555 0.057 3.656 0.125 -0.357 2.408 149.029 20 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 19 1_555 A C 56 1_555 0.917 0.448 -0.329 -12.496 -5.084 -4.236 21 A_G19:C56_A A 19 ? A 56 ? ? 1 1 A G 27 1_555 A C 43 1_555 -0.081 -0.045 0.086 -6.347 -8.915 2.188 22 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A G 28 1_555 A C 42 1_555 -0.250 -0.308 -0.572 -10.993 -13.025 -0.224 23 A_G28:C42_A A 28 ? A 42 ? 19 1 1 A G 29 1_555 A C 41 1_555 0.162 -0.133 -0.196 -12.325 -7.436 -1.405 24 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A G 30 1_555 A C 40 1_555 -0.126 -0.064 -0.262 -13.556 -14.620 4.278 25 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A A 31 1_555 A U 39 1_555 0.046 -0.075 0.007 -14.186 -12.154 -1.096 26 A_A31:U39_A A 31 ? A 39 ? 20 1 1 A U 32 1_555 A A 38 1_555 5.173 -1.453 2.089 -27.664 6.651 2.421 27 A_U32:A38_A A 32 ? A 38 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 0.259 -1.706 3.116 -0.152 6.502 30.717 -4.254 -0.504 2.705 12.105 0.283 31.382 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A G 3 1_555 A C 70 1_555 0.030 -1.684 3.143 -0.090 16.825 32.133 -4.711 -0.058 2.040 28.119 0.151 36.168 2 AA_C2G3:C70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 70 1_555 A C 4 1_555 A G 69 1_555 0.727 -2.003 3.001 2.913 2.336 29.191 -4.396 -0.868 2.893 4.611 -5.750 29.424 3 AA_G3C4:G69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A C 4 1_555 A G 69 1_555 A G 5 1_555 A C 68 1_555 -0.525 -1.751 3.284 -3.185 11.193 32.375 -4.588 0.427 2.592 19.313 5.495 34.350 4 AA_C4G5:C68G69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 68 1_555 A G 6 1_555 A C 67 1_555 0.602 -2.297 3.524 6.215 6.400 30.583 -5.388 0.068 3.053 11.822 -11.479 31.828 5 AA_G5G6:C67C68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A G 6 1_555 A C 67 1_555 A A 7 1_555 A U 66 1_555 -0.509 -1.799 2.718 1.503 12.014 29.148 -4.931 1.141 1.824 22.677 -2.838 31.512 6 AA_G6A7:U66C67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A A 7 1_555 A U 66 1_555 A C 49 1_555 A G 65 1_555 0.760 -2.337 3.281 4.560 2.542 32.282 -4.589 -0.568 3.168 4.535 -8.134 32.691 7 AA_A7C49:G65U66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A C 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -0.491 -2.361 3.440 -2.018 2.303 30.052 -5.013 0.520 3.279 4.427 3.878 30.204 8 AA_C49U50:A64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 50 1_555 A A 64 1_555 A U 51 1_555 A G 63 1_555 0.613 -1.698 3.156 -0.112 1.010 36.800 -2.820 -0.985 3.108 1.599 0.177 36.813 9 AA_U50U51:G63A64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A U 51 1_555 A G 63 1_555 A G 52 1_555 A C 62 1_555 -0.199 -2.078 3.429 11.217 16.334 24.790 -6.420 2.156 1.575 32.261 -22.155 31.639 10 AA_U51G52:C62G63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 52 1_555 A C 62 1_555 A G 53 1_555 A C 61 1_555 1.090 -1.637 3.290 -2.771 1.815 36.252 -2.868 -2.124 3.118 2.909 4.443 36.398 11 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A U 54 1_555 A A 58 1_555 -2.450 -2.075 3.003 4.191 -1.549 86.129 -1.486 1.877 2.934 -1.134 -3.067 86.222 12 AA_G53U54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A U 54 1_555 A A 58 1_555 A U 55 1_555 A G 18 1_555 1.826 -1.905 3.687 10.428 5.970 42.312 -3.202 -1.299 3.726 8.077 -14.109 43.910 13 AA_U54U55:G18A58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A G 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.971 -1.442 3.422 -4.092 5.137 42.053 -2.525 0.910 3.307 7.106 5.661 42.540 14 AA_G10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.325 -1.538 3.043 0.297 5.803 32.587 -3.572 0.616 2.733 10.240 -0.523 33.087 15 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.366 -2.072 2.808 5.601 4.308 23.591 -5.987 -1.741 2.642 10.246 -13.322 24.612 16 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.115 -0.836 3.489 -3.530 -3.215 59.278 -0.666 1.939 3.635 -3.245 3.562 59.452 17 AA_C13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 48 1_555 2.378 -3.581 3.002 6.709 5.598 -64.753 3.105 2.462 3.036 -5.202 6.235 -65.276 18 AA_A14G15:C48U8_AA A 14 ? A 8 ? A 15 ? A 48 ? 1 A G 27 1_555 A C 43 1_555 A G 28 1_555 A C 42 1_555 -0.216 -1.805 3.341 2.839 11.044 31.613 -4.811 0.808 2.556 19.496 -5.011 33.557 19 AA_G27G28:C42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A G 28 1_555 A C 42 1_555 A G 29 1_555 A C 41 1_555 -0.189 -1.590 3.231 -3.717 8.293 33.873 -3.808 -0.209 2.781 13.926 6.241 35.036 20 AA_G28G29:C41C42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 29 1_555 A C 41 1_555 A G 30 1_555 A C 40 1_555 0.427 -1.830 3.337 2.723 6.995 28.232 -5.092 -0.278 2.839 14.029 -5.461 29.193 21 AA_G29G30:C40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A G 30 1_555 A C 40 1_555 A A 31 1_555 A U 39 1_555 -0.042 -1.460 3.138 -1.436 9.491 35.076 -3.539 -0.113 2.666 15.395 2.329 36.326 22 AA_G30A31:U39C40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 31 1_555 A U 39 1_555 A U 32 1_555 A A 38 1_555 0.547 -1.006 3.783 -6.706 11.729 52.789 -1.901 -1.055 3.417 12.952 7.406 54.370 23 AA_A31U32:A38U39_AA A 31 ? A 39 ? A 32 ? A 38 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EHZ _pdbx_initial_refinement_model.details 'PDB ENTRY 1EHZ' #