data_3L42 # _entry.id 3L42 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L42 pdb_00003l42 10.2210/pdb3l42/pdb RCSB RCSB056806 ? ? WWPDB D_1000056806 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_diffrn_source.type' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 3L42 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tempel, W.' 1 'Zeng, H.' 2 'Ni, S.' 3 'Amaya, M.F.' 4 'Dong, A.' 5 'Bountra, C.' 6 'Weigelt, J.' 7 'Arrowsmith, C.H.' 8 'Edwards, A.M.' 9 'Bochkarev, A.' 10 'Min, J.' 11 'Wu, H.' 12 'Structural Genomics Consortium (SGC)' 13 # _citation.id primary _citation.title 'Structural and Histone Binding Ability Characterizations of Human PWWP Domains.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e18919 _citation.page_last e18919 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21720545 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0018919 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, H.' 1 ? primary 'Zeng, H.' 2 ? primary 'Lam, R.' 3 ? primary 'Tempel, W.' 4 ? primary 'Amaya, M.F.' 5 ? primary 'Xu, C.' 6 ? primary 'Dombrovski, L.' 7 ? primary 'Qiu, W.' 8 ? primary 'Wang, Y.' 9 ? primary 'Min, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Peregrin 15076.455 1 ? ? 'UNP residues 1079-1207' ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 3 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bromodomain and PHD finger-containing protein 1, BR140 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWL PRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQS ; _entity_poly.pdbx_seq_one_letter_code_can ;GEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWL PRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ASP n 1 4 SER n 1 5 PRO n 1 6 LEU n 1 7 ASP n 1 8 ALA n 1 9 LEU n 1 10 ASP n 1 11 LEU n 1 12 VAL n 1 13 TRP n 1 14 ALA n 1 15 LYS n 1 16 CYS n 1 17 ARG n 1 18 GLY n 1 19 TYR n 1 20 PRO n 1 21 SER n 1 22 TYR n 1 23 PRO n 1 24 ALA n 1 25 LEU n 1 26 ILE n 1 27 ILE n 1 28 ASP n 1 29 PRO n 1 30 LYS n 1 31 MET n 1 32 PRO n 1 33 ARG n 1 34 GLU n 1 35 GLY n 1 36 MET n 1 37 PHE n 1 38 HIS n 1 39 HIS n 1 40 GLY n 1 41 VAL n 1 42 PRO n 1 43 ILE n 1 44 PRO n 1 45 VAL n 1 46 PRO n 1 47 PRO n 1 48 LEU n 1 49 GLU n 1 50 VAL n 1 51 LEU n 1 52 LYS n 1 53 LEU n 1 54 GLY n 1 55 GLU n 1 56 GLN n 1 57 MET n 1 58 THR n 1 59 GLN n 1 60 GLU n 1 61 ALA n 1 62 ARG n 1 63 GLU n 1 64 HIS n 1 65 LEU n 1 66 TYR n 1 67 LEU n 1 68 VAL n 1 69 LEU n 1 70 PHE n 1 71 PHE n 1 72 ASP n 1 73 ASN n 1 74 LYS n 1 75 ARG n 1 76 THR n 1 77 TRP n 1 78 GLN n 1 79 TRP n 1 80 LEU n 1 81 PRO n 1 82 ARG n 1 83 THR n 1 84 LYS n 1 85 LEU n 1 86 VAL n 1 87 PRO n 1 88 LEU n 1 89 GLY n 1 90 VAL n 1 91 ASN n 1 92 GLN n 1 93 ASP n 1 94 LEU n 1 95 ASP n 1 96 LYS n 1 97 GLU n 1 98 LYS n 1 99 MET n 1 100 LEU n 1 101 GLU n 1 102 GLY n 1 103 ARG n 1 104 LYS n 1 105 SER n 1 106 ASN n 1 107 ILE n 1 108 ARG n 1 109 LYS n 1 110 SER n 1 111 VAL n 1 112 GLN n 1 113 ILE n 1 114 ALA n 1 115 TYR n 1 116 HIS n 1 117 ARG n 1 118 ALA n 1 119 LEU n 1 120 GLN n 1 121 HIS n 1 122 ARG n 1 123 SER n 1 124 LYS n 1 125 VAL n 1 126 GLN n 1 127 GLY n 1 128 GLU n 1 129 GLN n 1 130 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRPF1, BR140' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-mhl _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1078 ? ? ? A . n A 1 2 GLU 2 1079 1079 GLU GLU A . n A 1 3 ASP 3 1080 1080 ASP ASP A . n A 1 4 SER 4 1081 1081 SER SER A . n A 1 5 PRO 5 1082 1082 PRO PRO A . n A 1 6 LEU 6 1083 1083 LEU LEU A . n A 1 7 ASP 7 1084 1084 ASP ASP A . n A 1 8 ALA 8 1085 1085 ALA ALA A . n A 1 9 LEU 9 1086 1086 LEU LEU A . n A 1 10 ASP 10 1087 1087 ASP ASP A . n A 1 11 LEU 11 1088 1088 LEU LEU A . n A 1 12 VAL 12 1089 1089 VAL VAL A . n A 1 13 TRP 13 1090 1090 TRP TRP A . n A 1 14 ALA 14 1091 1091 ALA ALA A . n A 1 15 LYS 15 1092 1092 LYS LYS A . n A 1 16 CYS 16 1093 1093 CYS CYS A . n A 1 17 ARG 17 1094 1094 ARG ARG A . n A 1 18 GLY 18 1095 1095 GLY GLY A . n A 1 19 TYR 19 1096 1096 TYR TYR A . n A 1 20 PRO 20 1097 1097 PRO PRO A . n A 1 21 SER 21 1098 1098 SER SER A . n A 1 22 TYR 22 1099 1099 TYR TYR A . n A 1 23 PRO 23 1100 1100 PRO PRO A . n A 1 24 ALA 24 1101 1101 ALA ALA A . n A 1 25 LEU 25 1102 1102 LEU LEU A . n A 1 26 ILE 26 1103 1103 ILE ILE A . n A 1 27 ILE 27 1104 1104 ILE ILE A . n A 1 28 ASP 28 1105 1105 ASP ASP A . n A 1 29 PRO 29 1106 1106 PRO PRO A . n A 1 30 LYS 30 1107 1107 LYS LYS A . n A 1 31 MET 31 1108 1108 MET MET A . n A 1 32 PRO 32 1109 1109 PRO PRO A . n A 1 33 ARG 33 1110 1110 ARG ARG A . n A 1 34 GLU 34 1111 1111 GLU GLU A . n A 1 35 GLY 35 1112 1112 GLY GLY A . n A 1 36 MET 36 1113 1113 MET MET A . n A 1 37 PHE 37 1114 1114 PHE PHE A . n A 1 38 HIS 38 1115 1115 HIS HIS A . n A 1 39 HIS 39 1116 1116 HIS HIS A . n A 1 40 GLY 40 1117 1117 GLY GLY A . n A 1 41 VAL 41 1118 1118 VAL VAL A . n A 1 42 PRO 42 1119 1119 PRO PRO A . n A 1 43 ILE 43 1120 1120 ILE ILE A . n A 1 44 PRO 44 1121 1121 PRO PRO A . n A 1 45 VAL 45 1122 1122 VAL VAL A . n A 1 46 PRO 46 1123 1123 PRO PRO A . n A 1 47 PRO 47 1124 1124 PRO PRO A . n A 1 48 LEU 48 1125 1125 LEU LEU A . n A 1 49 GLU 49 1126 1126 GLU GLU A . n A 1 50 VAL 50 1127 1127 VAL VAL A . n A 1 51 LEU 51 1128 1128 LEU LEU A . n A 1 52 LYS 52 1129 1129 LYS LYS A . n A 1 53 LEU 53 1130 1130 LEU LEU A . n A 1 54 GLY 54 1131 1131 GLY GLY A . n A 1 55 GLU 55 1132 1132 GLU GLU A . n A 1 56 GLN 56 1133 1133 GLN GLN A . n A 1 57 MET 57 1134 1134 MET MET A . n A 1 58 THR 58 1135 1135 THR THR A . n A 1 59 GLN 59 1136 1136 GLN GLN A . n A 1 60 GLU 60 1137 1137 GLU GLU A . n A 1 61 ALA 61 1138 1138 ALA ALA A . n A 1 62 ARG 62 1139 1139 ARG ARG A . n A 1 63 GLU 63 1140 1140 GLU GLU A . n A 1 64 HIS 64 1141 1141 HIS HIS A . n A 1 65 LEU 65 1142 1142 LEU LEU A . n A 1 66 TYR 66 1143 1143 TYR TYR A . n A 1 67 LEU 67 1144 1144 LEU LEU A . n A 1 68 VAL 68 1145 1145 VAL VAL A . n A 1 69 LEU 69 1146 1146 LEU LEU A . n A 1 70 PHE 70 1147 1147 PHE PHE A . n A 1 71 PHE 71 1148 1148 PHE PHE A . n A 1 72 ASP 72 1149 1149 ASP ASP A . n A 1 73 ASN 73 1150 1150 ASN ASN A . n A 1 74 LYS 74 1151 1151 LYS LYS A . n A 1 75 ARG 75 1152 1152 ARG ARG A . n A 1 76 THR 76 1153 1153 THR THR A . n A 1 77 TRP 77 1154 1154 TRP TRP A . n A 1 78 GLN 78 1155 1155 GLN GLN A . n A 1 79 TRP 79 1156 1156 TRP TRP A . n A 1 80 LEU 80 1157 1157 LEU LEU A . n A 1 81 PRO 81 1158 1158 PRO PRO A . n A 1 82 ARG 82 1159 1159 ARG ARG A . n A 1 83 THR 83 1160 1160 THR THR A . n A 1 84 LYS 84 1161 1161 LYS LYS A . n A 1 85 LEU 85 1162 1162 LEU LEU A . n A 1 86 VAL 86 1163 1163 VAL VAL A . n A 1 87 PRO 87 1164 1164 PRO PRO A . n A 1 88 LEU 88 1165 1165 LEU LEU A . n A 1 89 GLY 89 1166 1166 GLY GLY A . n A 1 90 VAL 90 1167 1167 VAL VAL A . n A 1 91 ASN 91 1168 1168 ASN ASN A . n A 1 92 GLN 92 1169 1169 GLN GLN A . n A 1 93 ASP 93 1170 1170 ASP ASP A . n A 1 94 LEU 94 1171 1171 LEU LEU A . n A 1 95 ASP 95 1172 1172 ASP ASP A . n A 1 96 LYS 96 1173 1173 LYS LYS A . n A 1 97 GLU 97 1174 1174 GLU GLU A . n A 1 98 LYS 98 1175 1175 LYS LYS A . n A 1 99 MET 99 1176 1176 MET MET A . n A 1 100 LEU 100 1177 1177 LEU LEU A . n A 1 101 GLU 101 1178 1178 GLU GLU A . n A 1 102 GLY 102 1179 1179 GLY GLY A . n A 1 103 ARG 103 1180 1180 ARG ARG A . n A 1 104 LYS 104 1181 1181 LYS LYS A . n A 1 105 SER 105 1182 1182 SER SER A . n A 1 106 ASN 106 1183 1183 ASN ASN A . n A 1 107 ILE 107 1184 1184 ILE ILE A . n A 1 108 ARG 108 1185 1185 ARG ARG A . n A 1 109 LYS 109 1186 1186 LYS LYS A . n A 1 110 SER 110 1187 1187 SER SER A . n A 1 111 VAL 111 1188 1188 VAL VAL A . n A 1 112 GLN 112 1189 1189 GLN GLN A . n A 1 113 ILE 113 1190 1190 ILE ILE A . n A 1 114 ALA 114 1191 1191 ALA ALA A . n A 1 115 TYR 115 1192 1192 TYR TYR A . n A 1 116 HIS 116 1193 1193 HIS HIS A . n A 1 117 ARG 117 1194 1194 ARG ARG A . n A 1 118 ALA 118 1195 1195 ALA ALA A . n A 1 119 LEU 119 1196 1196 LEU LEU A . n A 1 120 GLN 120 1197 1197 GLN GLN A . n A 1 121 HIS 121 1198 1198 HIS HIS A . n A 1 122 ARG 122 1199 1199 ARG ARG A . n A 1 123 SER 123 1200 1200 SER SER A . n A 1 124 LYS 124 1201 1201 LYS LYS A . n A 1 125 VAL 125 1202 1202 VAL VAL A . n A 1 126 GLN 126 1203 1203 GLN GLN A . n A 1 127 GLY 127 1204 1204 GLY GLY A . n A 1 128 GLU 128 1205 1205 GLU GLU A . n A 1 129 GLN 129 1206 ? ? ? A . n A 1 130 SER 130 1207 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 1 1 UNX UNX A . C 2 UNX 1 2 2 UNX UNX A . D 2 UNX 1 3 3 UNX UNX A . E 3 HOH 1 4 4 HOH HOH A . E 3 HOH 2 5 5 HOH HOH A . E 3 HOH 3 6 6 HOH HOH A . E 3 HOH 4 7 7 HOH HOH A . E 3 HOH 5 8 8 HOH HOH A . E 3 HOH 6 9 9 HOH HOH A . E 3 HOH 7 10 10 HOH HOH A . E 3 HOH 8 11 11 HOH HOH A . E 3 HOH 9 12 12 HOH HOH A . E 3 HOH 10 13 13 HOH HOH A . E 3 HOH 11 14 14 HOH HOH A . E 3 HOH 12 15 15 HOH HOH A . E 3 HOH 13 16 16 HOH HOH A . E 3 HOH 14 17 17 HOH HOH A . E 3 HOH 15 18 18 HOH HOH A . E 3 HOH 16 19 19 HOH HOH A . E 3 HOH 17 20 20 HOH HOH A . E 3 HOH 18 21 21 HOH HOH A . E 3 HOH 19 22 22 HOH HOH A . E 3 HOH 20 23 23 HOH HOH A . E 3 HOH 21 24 24 HOH HOH A . E 3 HOH 22 25 25 HOH HOH A . E 3 HOH 23 26 26 HOH HOH A . E 3 HOH 24 27 27 HOH HOH A . E 3 HOH 25 28 28 HOH HOH A . E 3 HOH 26 29 29 HOH HOH A . E 3 HOH 27 30 30 HOH HOH A . E 3 HOH 28 31 31 HOH HOH A . E 3 HOH 29 32 32 HOH HOH A . E 3 HOH 30 33 33 HOH HOH A . E 3 HOH 31 34 34 HOH HOH A . E 3 HOH 32 35 35 HOH HOH A . E 3 HOH 33 36 36 HOH HOH A . E 3 HOH 34 37 37 HOH HOH A . E 3 HOH 35 38 38 HOH HOH A . E 3 HOH 36 39 39 HOH HOH A . E 3 HOH 37 40 40 HOH HOH A . E 3 HOH 38 41 41 HOH HOH A . E 3 HOH 39 42 42 HOH HOH A . E 3 HOH 40 43 43 HOH HOH A . E 3 HOH 41 44 44 HOH HOH A . E 3 HOH 42 45 45 HOH HOH A . E 3 HOH 43 46 46 HOH HOH A . E 3 HOH 44 47 47 HOH HOH A . E 3 HOH 45 48 48 HOH HOH A . E 3 HOH 46 49 49 HOH HOH A . E 3 HOH 47 50 50 HOH HOH A . E 3 HOH 48 51 51 HOH HOH A . E 3 HOH 49 52 52 HOH HOH A . E 3 HOH 50 54 54 HOH HOH A . E 3 HOH 51 55 55 HOH HOH A . E 3 HOH 52 56 56 HOH HOH A . E 3 HOH 53 57 57 HOH HOH A . E 3 HOH 54 58 58 HOH HOH A . E 3 HOH 55 59 59 HOH HOH A . E 3 HOH 56 60 60 HOH HOH A . E 3 HOH 57 61 61 HOH HOH A . E 3 HOH 58 62 62 HOH HOH A . E 3 HOH 59 63 63 HOH HOH A . E 3 HOH 60 64 64 HOH HOH A . E 3 HOH 61 65 65 HOH HOH A . E 3 HOH 62 66 66 HOH HOH A . E 3 HOH 63 67 67 HOH HOH A . E 3 HOH 64 68 68 HOH HOH A . E 3 HOH 65 69 69 HOH HOH A . E 3 HOH 66 70 70 HOH HOH A . E 3 HOH 67 71 71 HOH HOH A . E 3 HOH 68 72 72 HOH HOH A . E 3 HOH 69 73 73 HOH HOH A . E 3 HOH 70 74 74 HOH HOH A . E 3 HOH 71 75 75 HOH HOH A . E 3 HOH 72 76 76 HOH HOH A . E 3 HOH 73 77 77 HOH HOH A . E 3 HOH 74 78 78 HOH HOH A . E 3 HOH 75 79 79 HOH HOH A . E 3 HOH 76 80 80 HOH HOH A . E 3 HOH 77 81 81 HOH HOH A . E 3 HOH 78 82 82 HOH HOH A . E 3 HOH 79 83 83 HOH HOH A . E 3 HOH 80 84 84 HOH HOH A . E 3 HOH 81 85 85 HOH HOH A . E 3 HOH 82 86 86 HOH HOH A . E 3 HOH 83 87 87 HOH HOH A . E 3 HOH 84 88 88 HOH HOH A . E 3 HOH 85 89 89 HOH HOH A . E 3 HOH 86 90 90 HOH HOH A . E 3 HOH 87 91 91 HOH HOH A . E 3 HOH 88 92 92 HOH HOH A . E 3 HOH 89 93 93 HOH HOH A . E 3 HOH 90 94 94 HOH HOH A . E 3 HOH 91 95 95 HOH HOH A . E 3 HOH 92 96 96 HOH HOH A . E 3 HOH 93 97 97 HOH HOH A . E 3 HOH 94 98 98 HOH HOH A . E 3 HOH 95 99 99 HOH HOH A . E 3 HOH 96 100 100 HOH HOH A . E 3 HOH 97 101 101 HOH HOH A . E 3 HOH 98 102 102 HOH HOH A . E 3 HOH 99 103 103 HOH HOH A . E 3 HOH 100 104 104 HOH HOH A . E 3 HOH 101 105 105 HOH HOH A . E 3 HOH 102 106 106 HOH HOH A . E 3 HOH 103 107 107 HOH HOH A . E 3 HOH 104 108 108 HOH HOH A . E 3 HOH 105 109 109 HOH HOH A . E 3 HOH 106 1208 1 HOH HOH A . E 3 HOH 107 1209 2 HOH HOH A . E 3 HOH 108 1210 3 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 1079 ? CG ? A GLU 2 CG 2 1 Y 1 A GLU 1079 ? CD ? A GLU 2 CD 3 1 Y 1 A GLU 1079 ? OE1 ? A GLU 2 OE1 4 1 Y 1 A GLU 1079 ? OE2 ? A GLU 2 OE2 5 1 Y 1 A LYS 1107 ? CE ? A LYS 30 CE 6 1 Y 1 A LYS 1107 ? NZ ? A LYS 30 NZ 7 1 Y 1 A ARG 1110 ? CG ? A ARG 33 CG 8 1 Y 1 A ARG 1110 ? CD ? A ARG 33 CD 9 1 Y 1 A ARG 1110 ? NE ? A ARG 33 NE 10 1 Y 1 A ARG 1110 ? CZ ? A ARG 33 CZ 11 1 Y 1 A ARG 1110 ? NH1 ? A ARG 33 NH1 12 1 Y 1 A ARG 1110 ? NH2 ? A ARG 33 NH2 13 1 Y 1 A GLU 1111 ? CG ? A GLU 34 CG 14 1 Y 1 A GLU 1111 ? CD ? A GLU 34 CD 15 1 Y 1 A GLU 1111 ? OE1 ? A GLU 34 OE1 16 1 Y 1 A GLU 1111 ? OE2 ? A GLU 34 OE2 17 1 Y 1 A GLU 1126 ? CG ? A GLU 49 CG 18 1 Y 1 A GLU 1126 ? CD ? A GLU 49 CD 19 1 Y 1 A GLU 1126 ? OE1 ? A GLU 49 OE1 20 1 Y 1 A GLU 1126 ? OE2 ? A GLU 49 OE2 21 1 Y 1 A LYS 1129 ? CD ? A LYS 52 CD 22 1 Y 1 A LYS 1129 ? CE ? A LYS 52 CE 23 1 Y 1 A LYS 1129 ? NZ ? A LYS 52 NZ 24 1 Y 1 A ARG 1139 ? CG ? A ARG 62 CG 25 1 Y 1 A ARG 1139 ? CD ? A ARG 62 CD 26 1 Y 1 A ARG 1139 ? NE ? A ARG 62 NE 27 1 Y 1 A ARG 1139 ? CZ ? A ARG 62 CZ 28 1 Y 1 A ARG 1139 ? NH1 ? A ARG 62 NH1 29 1 Y 1 A ARG 1139 ? NH2 ? A ARG 62 NH2 30 1 Y 1 A GLU 1140 ? CD ? A GLU 63 CD 31 1 Y 1 A GLU 1140 ? OE1 ? A GLU 63 OE1 32 1 Y 1 A GLU 1140 ? OE2 ? A GLU 63 OE2 33 1 Y 1 A ARG 1152 ? NE ? A ARG 75 NE 34 1 Y 1 A ARG 1152 ? CZ ? A ARG 75 CZ 35 1 Y 1 A ARG 1152 ? NH1 ? A ARG 75 NH1 36 1 Y 1 A ARG 1152 ? NH2 ? A ARG 75 NH2 37 1 Y 1 A GLN 1169 ? CG ? A GLN 92 CG 38 1 Y 1 A GLN 1169 ? CD ? A GLN 92 CD 39 1 Y 1 A GLN 1169 ? OE1 ? A GLN 92 OE1 40 1 Y 1 A GLN 1169 ? NE2 ? A GLN 92 NE2 41 1 Y 1 A LYS 1173 ? CE ? A LYS 96 CE 42 1 Y 1 A LYS 1173 ? NZ ? A LYS 96 NZ 43 1 Y 1 A ARG 1180 ? CG ? A ARG 103 CG 44 1 Y 1 A ARG 1180 ? CD ? A ARG 103 CD 45 1 Y 1 A ARG 1180 ? NE ? A ARG 103 NE 46 1 Y 1 A ARG 1180 ? CZ ? A ARG 103 CZ 47 1 Y 1 A ARG 1180 ? NH1 ? A ARG 103 NH1 48 1 Y 1 A ARG 1180 ? NH2 ? A ARG 103 NH2 49 1 Y 1 A LYS 1181 ? CD ? A LYS 104 CD 50 1 Y 1 A LYS 1181 ? CE ? A LYS 104 CE 51 1 Y 1 A LYS 1181 ? NZ ? A LYS 104 NZ 52 1 Y 1 A ASN 1183 ? CG ? A ASN 106 CG 53 1 Y 1 A ASN 1183 ? OD1 ? A ASN 106 OD1 54 1 Y 1 A ASN 1183 ? ND2 ? A ASN 106 ND2 55 1 Y 1 A LYS 1201 ? CE ? A LYS 124 CE 56 1 Y 1 A LYS 1201 ? NZ ? A LYS 124 NZ 57 1 Y 1 A GLN 1203 ? OE1 ? A GLN 126 OE1 58 1 Y 1 A GLN 1203 ? NE2 ? A GLN 126 NE2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 REFMAC 5.5.0102 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 # _cell.entry_id 3L42 _cell.length_a 44.352 _cell.length_b 44.352 _cell.length_c 122.722 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L42 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3L42 _exptl.method 'X-RAY DIFFRACTION' # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 39.3 2.0 ? 'THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS' ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION' 8.5 291 '3.5M sodium formate, 0.1M TRIS-hydrochloride, pH 8.5, vapor diffusion, temperature 291K' ? ? 2 'VAPOR DIFFUSION' 7.5 291 '25% PEG3350, 0.1M ammonium sulfate, 0.1M HEPES, pH 7.5, vapor diffusion, temperature 291K' ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-05 _diffrn_detector.details ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97711 1.0 2 1.5418 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'APS BEAMLINE 19-ID' 0.97711 ? APS 19-ID 2 'ROTATING ANODE' 'RIGAKU FR-E' 1.5418 ? ? ? # _reflns.entry_id 3L42 _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 40.000 _reflns.number_obs 31403 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 12.200 _reflns.pdbx_chi_squared 1.614 _reflns.pdbx_redundancy 14.500 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.30 1.32 ? ? ? 0.465 ? ? 1.468 13.80 ? 1544 100.00 1 1,2 1.32 1.35 ? ? ? 0.387 ? ? 1.465 14.20 ? 1535 100.00 2 1,2 1.35 1.37 ? ? ? 0.346 ? ? 1.473 14.30 ? 1522 100.00 3 1,2 1.37 1.40 ? ? ? 0.294 ? ? 1.375 14.30 ? 1544 100.00 4 1,2 1.40 1.43 ? ? ? 0.253 ? ? 1.353 14.30 ? 1548 100.00 5 1,2 1.43 1.46 ? ? ? 0.218 ? ? 1.302 14.40 ? 1521 100.00 6 1,2 1.46 1.50 ? ? ? 0.169 ? ? 1.272 14.30 ? 1544 100.00 7 1,2 1.50 1.54 ? ? ? 0.143 ? ? 1.285 14.40 ? 1549 100.00 8 1,2 1.54 1.59 ? ? ? 0.124 ? ? 1.217 14.40 ? 1544 100.00 9 1,2 1.59 1.64 ? ? ? 0.103 ? ? 1.180 14.60 ? 1542 100.00 10 1,2 1.64 1.70 ? ? ? 0.092 ? ? 1.200 14.50 ? 1562 100.00 11 1,2 1.70 1.76 ? ? ? 0.079 ? ? 1.199 14.60 ? 1548 100.00 12 1,2 1.76 1.84 ? ? ? 0.068 ? ? 1.252 14.70 ? 1580 100.00 13 1,2 1.84 1.94 ? ? ? 0.058 ? ? 1.365 14.90 ? 1545 100.00 14 1,2 1.94 2.06 ? ? ? 0.057 ? ? 1.651 15.00 ? 1569 100.00 15 1,2 2.06 2.22 ? ? ? 0.059 ? ? 2.209 15.00 ? 1600 100.00 16 1,2 2.22 2.45 ? ? ? 0.061 ? ? 2.633 15.00 ? 1583 100.00 17 1,2 2.45 2.80 ? ? ? 0.052 ? ? 2.424 14.80 ? 1614 100.00 18 1,2 2.80 3.53 ? ? ? 0.042 ? ? 2.330 14.30 ? 1649 99.90 19 1,2 3.53 40.00 ? ? ? 0.039 ? ? 2.384 13.40 ? 1760 98.50 20 1,2 # _refine.entry_id 3L42 _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 30.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.926 _refine.ls_number_reflns_obs 31089 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY The structure was solved using the selenomethionene derivative crystallized in space group I222 and a copper rotating anode. The programs ARP/WARP, COOT and MOLPROBITY were also used during model refinement. ; _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_R_work 0.209 _refine.ls_wR_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.233 _refine.ls_wR_factor_R_free 0.234 _refine.ls_percent_reflns_R_free 5.034 _refine.ls_number_reflns_R_free 1565 _refine.B_iso_mean 10.096 _refine.aniso_B[1][1] -0.007 _refine.aniso_B[2][2] -0.007 _refine.aniso_B[3][3] 0.015 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.pdbx_overall_ESU_R 0.060 _refine.pdbx_overall_ESU_R_Free 0.061 _refine.overall_SU_ML 0.032 _refine.overall_SU_B 0.726 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 983 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1094 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 30.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1099 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 752 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1519 1.632 1.977 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1864 0.968 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 153 5.307 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44 36.245 23.636 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 189 13.530 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 9.874 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 172 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1226 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 213 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 680 1.096 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 263 0.308 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1115 1.855 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 419 2.443 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 390 3.455 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.334 1.300 2250 100.000 2131 0.255 119 0.248 . . . . . 'X-RAY DIFFRACTION' 20 1.370 1.334 2178 100.000 2071 0.232 107 0.269 . . . . . 'X-RAY DIFFRACTION' 20 1.410 1.370 2125 100.000 2024 0.231 101 0.238 . . . . . 'X-RAY DIFFRACTION' 20 1.453 1.410 2076 100.000 1964 0.214 112 0.218 . . . . . 'X-RAY DIFFRACTION' 20 1.501 1.453 2035 100.000 1918 0.201 117 0.245 . . . . . 'X-RAY DIFFRACTION' 20 1.553 1.501 1937 100.000 1850 0.179 87 0.216 . . . . . 'X-RAY DIFFRACTION' 20 1.612 1.553 1901 100.000 1823 0.195 78 0.229 . . . . . 'X-RAY DIFFRACTION' 20 1.677 1.612 1809 100.000 1716 0.180 93 0.193 . . . . . 'X-RAY DIFFRACTION' 20 1.752 1.677 1751 100.000 1664 0.191 87 0.239 . . . . . 'X-RAY DIFFRACTION' 20 1.837 1.752 1701 100.000 1616 0.192 85 0.231 . . . . . 'X-RAY DIFFRACTION' 20 1.936 1.837 1592 100.000 1506 0.195 86 0.214 . . . . . 'X-RAY DIFFRACTION' 20 2.053 1.936 1517 100.000 1435 0.197 82 0.197 . . . . . 'X-RAY DIFFRACTION' 20 2.194 2.053 1443 100.000 1374 0.197 69 0.195 . . . . . 'X-RAY DIFFRACTION' 20 2.368 2.194 1342 100.000 1270 0.206 72 0.190 . . . . . 'X-RAY DIFFRACTION' 20 2.593 2.368 1258 100.000 1204 0.195 54 0.220 . . . . . 'X-RAY DIFFRACTION' 20 2.896 2.593 1127 100.000 1065 0.217 62 0.243 . . . . . 'X-RAY DIFFRACTION' 20 3.339 2.896 1026 100.000 974 0.217 52 0.190 . . . . . 'X-RAY DIFFRACTION' 20 4.077 3.339 893 99.888 837 0.203 55 0.264 . . . . . 'X-RAY DIFFRACTION' 20 5.713 4.077 704 99.858 680 0.210 23 0.287 . . . . . 'X-RAY DIFFRACTION' 20 30.000 5.713 447 95.302 402 0.344 24 0.429 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3L42 _struct.title 'PWWP domain of human bromodomain and PHD finger containing protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L42 _struct_keywords.text ;transcription regulation, histone h3 acetylation, chromatin modification, Structural Genomics, Structural Genomics Consortium, SGC, Activator, Bromodomain, Chromatin regulator, DNA-binding, Metal-binding, Nucleus, Phosphoprotein, Transcription, Zinc-finger ; _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRPF1_HUMAN _struct_ref.pdbx_db_accession P55201 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLP RTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQS ; _struct_ref.pdbx_align_begin 1079 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L42 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55201 _struct_ref_seq.db_align_beg 1079 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1079 _struct_ref_seq.pdbx_auth_seq_align_end 1207 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3L42 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P55201 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1078 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 47 ? ALA A 61 ? PRO A 1124 ALA A 1138 1 ? 15 HELX_P HELX_P2 2 ASN A 91 ? LEU A 100 ? ASN A 1168 LEU A 1177 1 ? 10 HELX_P HELX_P3 3 LYS A 104 ? GLN A 126 ? LYS A 1181 GLN A 1203 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 77 ? PRO A 81 ? TRP A 1154 PRO A 1158 A 2 LEU A 65 ? PHE A 70 ? LEU A 1142 PHE A 1147 A 3 TYR A 22 ? ILE A 27 ? TYR A 1099 ILE A 1104 A 4 LEU A 11 ? ALA A 14 ? LEU A 1088 ALA A 1091 A 5 LEU A 85 ? PRO A 87 ? LEU A 1162 PRO A 1164 B 1 MET A 36 ? HIS A 38 ? MET A 1113 HIS A 1115 B 2 VAL A 41 ? ILE A 43 ? VAL A 1118 ILE A 1120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 80 ? O LEU A 1157 N TYR A 66 ? N TYR A 1143 A 2 3 O LEU A 67 ? O LEU A 1144 N ILE A 27 ? N ILE A 1104 A 3 4 O TYR A 22 ? O TYR A 1099 N ALA A 14 ? N ALA A 1091 A 4 5 N TRP A 13 ? N TRP A 1090 O VAL A 86 ? O VAL A 1163 B 1 2 N MET A 36 ? N MET A 1113 O ILE A 43 ? O ILE A 1120 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 1205 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 1205 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.184 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.068 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 1094 ? ? CZ A ARG 1094 ? ? NH1 A ARG 1094 ? ? 124.34 120.30 4.04 0.50 N 2 1 NE A ARG 1094 ? ? CZ A ARG 1094 ? ? NH2 A ARG 1094 ? ? 115.22 120.30 -5.08 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 1148 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -81.90 _pdbx_validate_torsion.psi 37.70 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # _phasing.method sad # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1078 ? A GLY 1 2 1 Y 1 A GLN 1206 ? A GLN 129 3 1 Y 1 A SER 1207 ? A SER 130 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 3L42 _atom_sites.fract_transf_matrix[1][1] 0.022547 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022547 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008148 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S X # loop_