HEADER TRANSFERASE 29-DEC-09 3L7U TITLE CRYSTAL STRUCTURE OF HUMAN NM23-H1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE A; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NDP KINASE A, NDK A, TUMOR METASTATIC PROCESS-ASSOCIATED COMPND 5 PROTEIN, METASTASIS INHIBITION FACTOR NM23, NM23-H1, GRANZYME A- COMPND 6 ACTIVATED DNASE, GAAD; COMPND 7 EC: 2.7.4.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NME1, NDPKA, NM23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, TRANSFERASE, TUMOR KEYWDS 2 SUPPRESSOR EXPDTA X-RAY DIFFRACTION AUTHOR B.G.HAN,K.MIN,B.I.LEE,S.LEE REVDAT 2 01-NOV-23 3L7U 1 REMARK SEQADV REVDAT 1 10-NOV-10 3L7U 0 JRNL AUTH B.G.HAN,K.MIN,B.I.LEE,S.LEE JRNL TITL REFINED STRUCTURE OF HUMAN NM23-H1 FROM A HEXAGONAL CRYSTAL JRNL REF BULL.KOREAN CHEM.SOC. V. 31 1397 2010 JRNL REFN ISSN 0253-2964 JRNL DOI 10.5012/BKCS.2010.31.5.1397 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2337 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3724 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5024 ; 0.897 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 4.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;32.612 ;23.943 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;12.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.562 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2828 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2263 ; 0.227 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3643 ; 0.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 0.412 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1381 ; 0.737 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 63.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.5% PEG 8000, 0.1M NA/K PHOSPHATE PH REMARK 280 6.2, 0.2 NACL,0.2M NASCN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.27367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.54733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.91050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.18417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.63683 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.27367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.54733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.18417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 55.91050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 18.63683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 110 -51.11 -121.65 REMARK 500 ILE A 116 -25.13 50.85 REMARK 500 TYR B 52 41.47 -101.33 REMARK 500 ILE B 116 -23.83 52.96 REMARK 500 ILE C 110 -50.60 -122.02 REMARK 500 ILE C 116 -26.19 52.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 154 DBREF 3L7U A 1 152 UNP P15531 NDKA_HUMAN 1 152 DBREF 3L7U B 1 152 UNP P15531 NDKA_HUMAN 1 152 DBREF 3L7U C 1 152 UNP P15531 NDKA_HUMAN 1 152 SEQADV 3L7U MET A -19 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY A -18 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER A -17 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER A -16 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -15 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -14 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -13 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -12 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -11 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A -10 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER A -9 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER A -8 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY A -7 UNP P15531 EXPRESSION TAG SEQADV 3L7U LEU A -6 UNP P15531 EXPRESSION TAG SEQADV 3L7U VAL A -5 UNP P15531 EXPRESSION TAG SEQADV 3L7U PRO A -4 UNP P15531 EXPRESSION TAG SEQADV 3L7U ARG A -3 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY A -2 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER A -1 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS A 0 UNP P15531 EXPRESSION TAG SEQADV 3L7U MET B -19 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY B -18 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER B -17 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER B -16 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -15 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -14 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -13 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -12 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -11 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B -10 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER B -9 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER B -8 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY B -7 UNP P15531 EXPRESSION TAG SEQADV 3L7U LEU B -6 UNP P15531 EXPRESSION TAG SEQADV 3L7U VAL B -5 UNP P15531 EXPRESSION TAG SEQADV 3L7U PRO B -4 UNP P15531 EXPRESSION TAG SEQADV 3L7U ARG B -3 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY B -2 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER B -1 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS B 0 UNP P15531 EXPRESSION TAG SEQADV 3L7U MET C -19 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY C -18 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER C -17 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER C -16 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -15 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -14 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -13 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -12 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -11 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C -10 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER C -9 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER C -8 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY C -7 UNP P15531 EXPRESSION TAG SEQADV 3L7U LEU C -6 UNP P15531 EXPRESSION TAG SEQADV 3L7U VAL C -5 UNP P15531 EXPRESSION TAG SEQADV 3L7U PRO C -4 UNP P15531 EXPRESSION TAG SEQADV 3L7U ARG C -3 UNP P15531 EXPRESSION TAG SEQADV 3L7U GLY C -2 UNP P15531 EXPRESSION TAG SEQADV 3L7U SER C -1 UNP P15531 EXPRESSION TAG SEQADV 3L7U HIS C 0 UNP P15531 EXPRESSION TAG SEQRES 1 A 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 A 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 A 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 A 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 A 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 A 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 A 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 A 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 A 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 A 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 A 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 A 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 A 172 ILE TYR GLU SEQRES 1 B 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 B 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 B 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 B 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 B 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 B 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 B 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 B 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 B 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 B 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 B 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 B 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 B 172 ILE TYR GLU SEQRES 1 C 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 C 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 C 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 C 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 C 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 C 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 C 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 C 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 C 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 C 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 C 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 C 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 C 172 ILE TYR GLU HET PO4 B 153 5 HET PO4 B 154 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *292(H2 O) HELIX 1 1 MET A 1 CYS A 4 5 4 HELIX 2 2 LYS A 12 ARG A 18 1 7 HELIX 3 3 LEU A 20 GLY A 32 1 13 HELIX 4 4 SER A 44 TYR A 52 1 9 HELIX 5 5 VAL A 53 LYS A 56 5 4 HELIX 6 6 PHE A 60 SER A 70 1 11 HELIX 7 7 ASN A 82 GLY A 92 1 11 HELIX 8 8 THR A 103 CYS A 109 1 7 HELIX 9 9 GLN A 111 ASN A 115 5 5 HELIX 10 10 SER A 122 PHE A 134 1 13 HELIX 11 11 HIS A 135 LEU A 139 5 5 HELIX 12 12 ALA A 146 TYR A 151 1 6 HELIX 13 13 HIS B 0 CYS B 4 5 5 HELIX 14 14 LYS B 12 ARG B 18 1 7 HELIX 15 15 LEU B 20 GLY B 32 1 13 HELIX 16 16 SER B 44 TYR B 52 1 9 HELIX 17 17 VAL B 53 LYS B 56 5 4 HELIX 18 18 PHE B 60 GLY B 71 1 12 HELIX 19 19 ASN B 82 GLY B 92 1 11 HELIX 20 20 ASN B 95 SER B 99 5 5 HELIX 21 21 THR B 103 CYS B 109 1 7 HELIX 22 22 GLN B 111 ASN B 115 5 5 HELIX 23 23 SER B 122 PHE B 134 1 13 HELIX 24 24 HIS B 135 LEU B 139 5 5 HELIX 25 25 ALA B 146 TYR B 151 1 6 HELIX 26 26 MET C 1 CYS C 4 5 4 HELIX 27 27 LYS C 12 ARG C 18 1 7 HELIX 28 28 LEU C 20 GLY C 32 1 13 HELIX 29 29 SER C 44 TYR C 52 1 9 HELIX 30 30 VAL C 53 LYS C 56 5 4 HELIX 31 31 PHE C 60 GLY C 71 1 12 HELIX 32 32 ASN C 82 GLY C 92 1 11 HELIX 33 33 THR C 103 CYS C 109 1 7 HELIX 34 34 GLN C 111 ASN C 115 5 5 HELIX 35 35 SER C 122 PHE C 134 1 13 HELIX 36 36 HIS C 135 LEU C 139 5 5 HELIX 37 37 ALA C 146 TYR C 151 1 6 SHEET 1 A 4 ARG A 34 MET A 41 0 SHEET 2 A 4 VAL A 73 GLU A 79 -1 O VAL A 73 N MET A 41 SHEET 3 A 4 ARG A 6 ILE A 11 -1 N ILE A 11 O VAL A 74 SHEET 4 A 4 ILE A 117 GLY A 119 -1 O HIS A 118 N ALA A 10 SHEET 1 B 4 ARG B 34 MET B 41 0 SHEET 2 B 4 VAL B 73 GLU B 79 -1 O VAL B 73 N MET B 41 SHEET 3 B 4 ARG B 6 ILE B 11 -1 N ILE B 11 O VAL B 74 SHEET 4 B 4 ILE B 117 GLY B 119 -1 O HIS B 118 N ALA B 10 SHEET 1 C 4 ARG C 34 MET C 41 0 SHEET 2 C 4 VAL C 73 GLU C 79 -1 O VAL C 73 N MET C 41 SHEET 3 C 4 ARG C 6 ILE C 11 -1 N ILE C 11 O VAL C 74 SHEET 4 C 4 ILE C 117 GLY C 119 -1 O HIS C 118 N ALA C 10 SITE 1 AC1 5 ARG B 88 THR B 94 HIS B 118 HOH B 328 SITE 2 AC1 5 HOH B 366 SITE 1 AC2 11 CYS A 145 ALA A 146 ARG B 18 HOH B 174 SITE 2 AC2 11 HOH B 245 HOH B 374 GLN C 17 ARG C 18 SITE 3 AC2 11 HOH C 196 HOH C 290 HOH C 345 CRYST1 154.510 154.510 111.821 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006476 0.003739 0.000000 0.00000 SCALE2 0.000000 0.007478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008954 0.00000