data_3L8N # _entry.id 3L8N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3L8N RCSB RCSB056971 WWPDB D_1000056971 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id HR5562A _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L8N _pdbx_database_status.recvd_initial_deposition_date 2009-12-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Seetharaman, J.' 1 'Su, M.' 2 'Forouhar, F.' 3 'Wang, D.' 4 'Janjua, H.' 5 'Cunningham, K.' 6 'Owens, L.' 7 'Xiao, R.' 8 'Liu, J.' 9 'Baran, M.C.' 10 'Acton, T.B.' 11 'Montelione, G.T.' 12 'Hunt, J.F.' 13 'Tong, L.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title ;Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BrefeldinA-inhibited GEP 2) from Homo sapiens (Human). Northeast Structural Genomics Consortium target id HR5562A ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Seetharaman, J.' 1 primary 'Su, M.' 2 primary 'Forouhar, F.' 3 primary 'Wang, D.' 4 primary 'Janjua, H.' 5 primary 'Cunningham, K.' 6 primary 'Owens, L.' 7 primary 'Xiao, R.' 8 primary 'Liu, J.' 9 primary 'Baran, M.C.' 10 primary 'Acton, T.B.' 11 primary 'Montelione, G.T.' 12 primary 'Hunt, J.F.' 13 primary 'Tong, L.' 14 # _cell.entry_id 3L8N _cell.length_a 53.929 _cell.length_b 53.929 _cell.length_c 75.711 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8N _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Brefeldin A-inhibited guanine nucleotide-exchange protein 2' _entity.formula_weight 23788.945 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Brefeldin A-inhibited GEP 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;EQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQG(MSE)LGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKEV (MSE)YAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRL(MSE)EKFAARYIECNQGQTLFASADTAYVLAYSII (MSE)LTTDLHSPQVKNK(MSE)TKEQYIK(MSE)NRGINDSKDLPEEYLSSIYEEIEGKKIA(MSE)KETKELT ; _entity_poly.pdbx_seq_one_letter_code_can ;EQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKEVMYAYVDQ LDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK EQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKELT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR5562A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLN n 1 3 PHE n 1 4 GLU n 1 5 VAL n 1 6 ILE n 1 7 LYS n 1 8 GLN n 1 9 GLN n 1 10 LYS n 1 11 GLU n 1 12 ILE n 1 13 ILE n 1 14 GLU n 1 15 HIS n 1 16 GLY n 1 17 ILE n 1 18 GLU n 1 19 LEU n 1 20 PHE n 1 21 ASN n 1 22 LYS n 1 23 LYS n 1 24 PRO n 1 25 LYS n 1 26 ARG n 1 27 GLY n 1 28 ILE n 1 29 GLN n 1 30 PHE n 1 31 LEU n 1 32 GLN n 1 33 GLU n 1 34 GLN n 1 35 GLY n 1 36 MSE n 1 37 LEU n 1 38 GLY n 1 39 THR n 1 40 SER n 1 41 VAL n 1 42 GLU n 1 43 ASP n 1 44 ILE n 1 45 ALA n 1 46 GLN n 1 47 PHE n 1 48 LEU n 1 49 HIS n 1 50 GLN n 1 51 GLU n 1 52 GLU n 1 53 ARG n 1 54 LEU n 1 55 ASP n 1 56 SER n 1 57 THR n 1 58 GLN n 1 59 VAL n 1 60 GLY n 1 61 ASP n 1 62 PHE n 1 63 LEU n 1 64 GLY n 1 65 ASP n 1 66 SER n 1 67 ALA n 1 68 ARG n 1 69 PHE n 1 70 ASN n 1 71 LYS n 1 72 GLU n 1 73 VAL n 1 74 MSE n 1 75 TYR n 1 76 ALA n 1 77 TYR n 1 78 VAL n 1 79 ASP n 1 80 GLN n 1 81 LEU n 1 82 ASP n 1 83 PHE n 1 84 CYS n 1 85 GLU n 1 86 LYS n 1 87 GLU n 1 88 PHE n 1 89 VAL n 1 90 SER n 1 91 ALA n 1 92 LEU n 1 93 ARG n 1 94 THR n 1 95 PHE n 1 96 LEU n 1 97 GLU n 1 98 GLY n 1 99 PHE n 1 100 ARG n 1 101 LEU n 1 102 PRO n 1 103 GLY n 1 104 GLU n 1 105 ALA n 1 106 GLN n 1 107 LYS n 1 108 ILE n 1 109 ASP n 1 110 ARG n 1 111 LEU n 1 112 MSE n 1 113 GLU n 1 114 LYS n 1 115 PHE n 1 116 ALA n 1 117 ALA n 1 118 ARG n 1 119 TYR n 1 120 ILE n 1 121 GLU n 1 122 CYS n 1 123 ASN n 1 124 GLN n 1 125 GLY n 1 126 GLN n 1 127 THR n 1 128 LEU n 1 129 PHE n 1 130 ALA n 1 131 SER n 1 132 ALA n 1 133 ASP n 1 134 THR n 1 135 ALA n 1 136 TYR n 1 137 VAL n 1 138 LEU n 1 139 ALA n 1 140 TYR n 1 141 SER n 1 142 ILE n 1 143 ILE n 1 144 MSE n 1 145 LEU n 1 146 THR n 1 147 THR n 1 148 ASP n 1 149 LEU n 1 150 HIS n 1 151 SER n 1 152 PRO n 1 153 GLN n 1 154 VAL n 1 155 LYS n 1 156 ASN n 1 157 LYS n 1 158 MSE n 1 159 THR n 1 160 LYS n 1 161 GLU n 1 162 GLN n 1 163 TYR n 1 164 ILE n 1 165 LYS n 1 166 MSE n 1 167 ASN n 1 168 ARG n 1 169 GLY n 1 170 ILE n 1 171 ASN n 1 172 ASP n 1 173 SER n 1 174 LYS n 1 175 ASP n 1 176 LEU n 1 177 PRO n 1 178 GLU n 1 179 GLU n 1 180 TYR n 1 181 LEU n 1 182 SER n 1 183 SER n 1 184 ILE n 1 185 TYR n 1 186 GLU n 1 187 GLU n 1 188 ILE n 1 189 GLU n 1 190 GLY n 1 191 LYS n 1 192 LYS n 1 193 ILE n 1 194 ALA n 1 195 MSE n 1 196 LYS n 1 197 GLU n 1 198 THR n 1 199 LYS n 1 200 GLU n 1 201 LEU n 1 202 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ARFGEF2, ARFGEP2, BIG2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BIG2_HUMAN _struct_ref.pdbx_db_accession Q9Y6D5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFNKEVMYAYVDQ LDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK EQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKELT ; _struct_ref.pdbx_align_begin 635 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L8N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 202 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y6D5 _struct_ref_seq.db_align_beg 635 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 836 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 202 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L8N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.97 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG1000, sodium citrate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2009-09-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3L8N _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 13133 _reflns.number_all 13133 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value 0.071 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 79.4 _reflns.pdbx_redundancy 1.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.91 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.343 _reflns_shell.pdbx_Rsym_value 0.29 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3L8N _refine.ls_number_reflns_obs 9846 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 306158.18 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.65 _refine.ls_d_res_high 2.86 _refine.ls_percent_reflns_obs 86.5 _refine.ls_R_factor_obs 0.2362 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2362 _refine.ls_R_factor_R_free 0.2901 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.3 _refine.ls_number_reflns_R_free 914 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 74.3 _refine.aniso_B[1][1] 4.23 _refine.aniso_B[2][2] 4.23 _refine.aniso_B[3][3] -8.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 58.2813 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;BULK SOLVENT MODEL USED. The data is twined with twinning operator= -h,-k,l and twinning fraction= 0.321. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3L8N _refine_analyze.Luzzati_coordinate_error_obs 0.60 _refine_analyze.Luzzati_sigma_a_obs 0.98 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.63 _refine_analyze.Luzzati_sigma_a_free 1.35 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1300 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1300 _refine_hist.d_res_high 2.86 _refine_hist.d_res_low 17.65 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008509 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.53903 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 792 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 42.6 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error 0.052 _refine_ls_shell.percent_reflns_R_free 9.1 _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3L8N _struct.title ;Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BrefeldinA-inhibited GEP 2) from Homo sapiens (Human). Northeast Structural Genomics Consortium target id HR5562A ; _struct.pdbx_descriptor 'Brefeldin A-inhibited guanine nucleotide-exchange protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L8N _struct_keywords.pdbx_keywords 'Nucleotide-binding protein, Metal-binding protein' _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Guanine-nucleotide releasing factor, Phosphoprotein, Nucleotide-binding protein, Metal-binding protein ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 14 ? ASN A 21 ? GLU A 14 ASN A 21 1 ? 8 HELX_P HELX_P2 2 LYS A 23 ? GLN A 34 ? LYS A 23 GLN A 34 1 ? 12 HELX_P HELX_P3 3 ILE A 44 ? HIS A 49 ? ILE A 44 HIS A 49 1 ? 6 HELX_P HELX_P4 4 ASP A 55 ? ASP A 61 ? ASP A 55 ASP A 61 1 ? 7 HELX_P HELX_P5 5 LYS A 71 ? ASP A 79 ? LYS A 71 ASP A 79 1 ? 9 HELX_P HELX_P6 6 PHE A 88 ? LEU A 96 ? PHE A 88 LEU A 96 1 ? 9 HELX_P HELX_P7 7 GLU A 104 ? ILE A 120 ? GLU A 104 ILE A 120 1 ? 17 HELX_P HELX_P8 8 SER A 131 ? MSE A 144 ? SER A 131 MSE A 144 1 ? 14 HELX_P HELX_P9 9 PRO A 177 ? GLU A 189 ? PRO A 177 GLU A 189 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 35 C ? ? ? 1_555 A MSE 36 N ? ? A GLY 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 36 C ? ? ? 1_555 A LEU 37 N ? ? A MSE 36 A LEU 37 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A VAL 73 C ? ? ? 1_555 A MSE 74 N ? ? A VAL 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? A MSE 74 C ? ? ? 1_555 A TYR 75 N ? ? A MSE 74 A TYR 75 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A LEU 111 C ? ? ? 1_555 A MSE 112 N ? ? A LEU 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 112 C ? ? ? 1_555 A GLU 113 N ? ? A MSE 112 A GLU 113 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A ILE 143 C ? ? ? 1_555 A MSE 144 N ? ? A ILE 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 144 C ? ? ? 1_555 A LEU 145 N ? ? A MSE 144 A LEU 145 1_555 ? ? ? ? ? ? ? 1.336 ? covale9 covale ? ? A LYS 157 C ? ? ? 1_555 A MSE 158 N ? ? A LYS 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.340 ? covale10 covale ? ? A MSE 158 C ? ? ? 1_555 A THR 159 N ? ? A MSE 158 A THR 159 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? A LYS 165 C ? ? ? 1_555 A MSE 166 N ? ? A LYS 165 A MSE 166 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? A MSE 166 C ? ? ? 1_555 A ASN 167 N ? ? A MSE 166 A ASN 167 1_555 ? ? ? ? ? ? ? 1.338 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3L8N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L8N _atom_sites.fract_transf_matrix[1][1] 0.018543 _atom_sites.fract_transf_matrix[1][2] 0.010706 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021411 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013208 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 PHE 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 MSE 36 36 36 MSE MSE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 MSE 74 74 74 MSE MSE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ASP 82 82 ? ? ? A . n A 1 83 PHE 83 83 ? ? ? A . n A 1 84 CYS 84 84 ? ? ? A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 MSE 112 112 112 MSE MSE A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 CYS 122 122 122 CYS CYS A . n A 1 123 ASN 123 123 ? ? ? A . n A 1 124 GLN 124 124 ? ? ? A . n A 1 125 GLY 125 125 ? ? ? A . n A 1 126 GLN 126 126 ? ? ? A . n A 1 127 THR 127 127 ? ? ? A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 MSE 144 144 144 MSE MSE A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 HIS 150 150 ? ? ? A . n A 1 151 SER 151 151 ? ? ? A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 MSE 158 158 158 MSE MSE A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 MSE 166 166 166 MSE MSE A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 TYR 180 180 180 TYR TYR A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 MSE 195 195 ? ? ? A . n A 1 196 LYS 196 196 ? ? ? A . n A 1 197 GLU 197 197 ? ? ? A . n A 1 198 THR 198 198 ? ? ? A . n A 1 199 LYS 199 199 ? ? ? A . n A 1 200 GLU 200 200 ? ? ? A . n A 1 201 LEU 201 201 ? ? ? A . n A 1 202 THR 202 202 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 36 A MSE 36 ? MET SELENOMETHIONINE 2 A MSE 74 A MSE 74 ? MET SELENOMETHIONINE 3 A MSE 112 A MSE 112 ? MET SELENOMETHIONINE 4 A MSE 144 A MSE 144 ? MET SELENOMETHIONINE 5 A MSE 158 A MSE 158 ? MET SELENOMETHIONINE 6 A MSE 166 A MSE 166 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXS phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 8 ? ? -57.71 -166.68 2 1 ILE A 12 ? ? -55.25 -91.80 3 1 GLU A 14 ? ? -140.72 -23.75 4 1 THR A 39 ? ? -79.24 -129.24 5 1 SER A 40 ? ? 37.80 -147.58 6 1 ARG A 53 ? ? -141.93 -0.26 7 1 PHE A 62 ? ? -64.65 -70.36 8 1 LEU A 63 ? ? -58.22 -9.86 9 1 ASP A 79 ? ? -73.86 36.60 10 1 GLN A 80 ? ? -132.98 -54.67 11 1 SER A 90 ? ? -69.72 1.95 12 1 ILE A 120 ? ? -69.45 72.81 13 1 GLU A 121 ? ? -155.33 -36.20 14 1 PHE A 129 ? ? 72.13 -173.90 15 1 ALA A 130 ? ? -149.11 -44.94 16 1 TYR A 163 ? ? 68.35 -21.13 17 1 ASN A 171 ? ? -107.39 78.73 18 1 ASP A 172 ? ? 69.58 -78.10 19 1 ILE A 193 ? ? -10.42 -77.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 6 ? CG1 ? A ILE 6 CG1 2 1 Y 1 A ILE 6 ? CG2 ? A ILE 6 CG2 3 1 Y 1 A ILE 6 ? CD1 ? A ILE 6 CD1 4 1 Y 1 A LYS 7 ? CG ? A LYS 7 CG 5 1 Y 1 A LYS 7 ? CD ? A LYS 7 CD 6 1 Y 1 A LYS 7 ? CE ? A LYS 7 CE 7 1 Y 1 A LYS 7 ? NZ ? A LYS 7 NZ 8 1 Y 1 A GLN 9 ? CG ? A GLN 9 CG 9 1 Y 1 A GLN 9 ? CD ? A GLN 9 CD 10 1 Y 1 A GLN 9 ? OE1 ? A GLN 9 OE1 11 1 Y 1 A GLN 9 ? NE2 ? A GLN 9 NE2 12 1 Y 1 A LYS 10 ? CB ? A LYS 10 CB 13 1 Y 1 A LYS 10 ? CG ? A LYS 10 CG 14 1 Y 1 A LYS 10 ? CD ? A LYS 10 CD 15 1 Y 1 A LYS 10 ? CE ? A LYS 10 CE 16 1 Y 1 A LYS 10 ? NZ ? A LYS 10 NZ 17 1 Y 1 A GLU 11 ? CG ? A GLU 11 CG 18 1 Y 1 A GLU 11 ? CD ? A GLU 11 CD 19 1 Y 1 A GLU 11 ? OE1 ? A GLU 11 OE1 20 1 Y 1 A GLU 11 ? OE2 ? A GLU 11 OE2 21 1 Y 1 A ILE 13 ? CG1 ? A ILE 13 CG1 22 1 Y 1 A ILE 13 ? CG2 ? A ILE 13 CG2 23 1 Y 1 A ILE 13 ? CD1 ? A ILE 13 CD1 24 1 Y 1 A GLU 18 ? CG ? A GLU 18 CG 25 1 Y 1 A GLU 18 ? CD ? A GLU 18 CD 26 1 Y 1 A GLU 18 ? OE1 ? A GLU 18 OE1 27 1 Y 1 A GLU 18 ? OE2 ? A GLU 18 OE2 28 1 Y 1 A LYS 22 ? CB ? A LYS 22 CB 29 1 Y 1 A LYS 22 ? CG ? A LYS 22 CG 30 1 Y 1 A LYS 22 ? CD ? A LYS 22 CD 31 1 Y 1 A LYS 22 ? CE ? A LYS 22 CE 32 1 Y 1 A LYS 22 ? NZ ? A LYS 22 NZ 33 1 Y 1 A LYS 23 ? CB ? A LYS 23 CB 34 1 Y 1 A LYS 23 ? CG ? A LYS 23 CG 35 1 Y 1 A LYS 23 ? CD ? A LYS 23 CD 36 1 Y 1 A LYS 23 ? CE ? A LYS 23 CE 37 1 Y 1 A LYS 23 ? NZ ? A LYS 23 NZ 38 1 Y 1 A ARG 26 ? CG ? A ARG 26 CG 39 1 Y 1 A ARG 26 ? CD ? A ARG 26 CD 40 1 Y 1 A ARG 26 ? NE ? A ARG 26 NE 41 1 Y 1 A ARG 26 ? CZ ? A ARG 26 CZ 42 1 Y 1 A ARG 26 ? NH1 ? A ARG 26 NH1 43 1 Y 1 A ARG 26 ? NH2 ? A ARG 26 NH2 44 1 Y 1 A ILE 28 ? CG1 ? A ILE 28 CG1 45 1 Y 1 A ILE 28 ? CG2 ? A ILE 28 CG2 46 1 Y 1 A ILE 28 ? CD1 ? A ILE 28 CD1 47 1 Y 1 A GLU 33 ? CB ? A GLU 33 CB 48 1 Y 1 A GLU 33 ? CG ? A GLU 33 CG 49 1 Y 1 A GLU 33 ? CD ? A GLU 33 CD 50 1 Y 1 A GLU 33 ? OE1 ? A GLU 33 OE1 51 1 Y 1 A GLU 33 ? OE2 ? A GLU 33 OE2 52 1 Y 1 A GLU 42 ? CB ? A GLU 42 CB 53 1 Y 1 A GLU 42 ? CG ? A GLU 42 CG 54 1 Y 1 A GLU 42 ? CD ? A GLU 42 CD 55 1 Y 1 A GLU 42 ? OE1 ? A GLU 42 OE1 56 1 Y 1 A GLU 42 ? OE2 ? A GLU 42 OE2 57 1 Y 1 A ALA 45 ? CB ? A ALA 45 CB 58 1 Y 1 A GLN 46 ? CB ? A GLN 46 CB 59 1 Y 1 A GLN 46 ? CG ? A GLN 46 CG 60 1 Y 1 A GLN 46 ? CD ? A GLN 46 CD 61 1 Y 1 A GLN 46 ? OE1 ? A GLN 46 OE1 62 1 Y 1 A GLN 46 ? NE2 ? A GLN 46 NE2 63 1 Y 1 A GLN 50 ? CG ? A GLN 50 CG 64 1 Y 1 A GLN 50 ? CD ? A GLN 50 CD 65 1 Y 1 A GLN 50 ? OE1 ? A GLN 50 OE1 66 1 Y 1 A GLN 50 ? NE2 ? A GLN 50 NE2 67 1 Y 1 A ARG 68 ? CG ? A ARG 68 CG 68 1 Y 1 A ARG 68 ? CD ? A ARG 68 CD 69 1 Y 1 A ARG 68 ? NE ? A ARG 68 NE 70 1 Y 1 A ARG 68 ? CZ ? A ARG 68 CZ 71 1 Y 1 A ARG 68 ? NH1 ? A ARG 68 NH1 72 1 Y 1 A ARG 68 ? NH2 ? A ARG 68 NH2 73 1 Y 1 A VAL 73 ? CB ? A VAL 73 CB 74 1 Y 1 A VAL 73 ? CG1 ? A VAL 73 CG1 75 1 Y 1 A VAL 73 ? CG2 ? A VAL 73 CG2 76 1 Y 1 A TYR 75 ? CG ? A TYR 75 CG 77 1 Y 1 A TYR 75 ? CD1 ? A TYR 75 CD1 78 1 Y 1 A TYR 75 ? CD2 ? A TYR 75 CD2 79 1 Y 1 A TYR 75 ? CE1 ? A TYR 75 CE1 80 1 Y 1 A TYR 75 ? CE2 ? A TYR 75 CE2 81 1 Y 1 A TYR 75 ? CZ ? A TYR 75 CZ 82 1 Y 1 A TYR 75 ? OH ? A TYR 75 OH 83 1 Y 1 A GLU 85 ? CG ? A GLU 85 CG 84 1 Y 1 A GLU 85 ? CD ? A GLU 85 CD 85 1 Y 1 A GLU 85 ? OE1 ? A GLU 85 OE1 86 1 Y 1 A GLU 85 ? OE2 ? A GLU 85 OE2 87 1 Y 1 A LYS 86 ? CG ? A LYS 86 CG 88 1 Y 1 A LYS 86 ? CD ? A LYS 86 CD 89 1 Y 1 A LYS 86 ? CE ? A LYS 86 CE 90 1 Y 1 A LYS 86 ? NZ ? A LYS 86 NZ 91 1 Y 1 A GLU 87 ? CG ? A GLU 87 CG 92 1 Y 1 A GLU 87 ? CD ? A GLU 87 CD 93 1 Y 1 A GLU 87 ? OE1 ? A GLU 87 OE1 94 1 Y 1 A GLU 87 ? OE2 ? A GLU 87 OE2 95 1 Y 1 A SER 90 ? CB ? A SER 90 CB 96 1 Y 1 A SER 90 ? OG ? A SER 90 OG 97 1 Y 1 A ARG 93 ? CG ? A ARG 93 CG 98 1 Y 1 A ARG 93 ? CD ? A ARG 93 CD 99 1 Y 1 A ARG 93 ? NE ? A ARG 93 NE 100 1 Y 1 A ARG 93 ? CZ ? A ARG 93 CZ 101 1 Y 1 A ARG 93 ? NH1 ? A ARG 93 NH1 102 1 Y 1 A ARG 93 ? NH2 ? A ARG 93 NH2 103 1 Y 1 A LYS 107 ? CG ? A LYS 107 CG 104 1 Y 1 A LYS 107 ? CD ? A LYS 107 CD 105 1 Y 1 A LYS 107 ? CE ? A LYS 107 CE 106 1 Y 1 A LYS 107 ? NZ ? A LYS 107 NZ 107 1 Y 1 A ILE 108 ? CG1 ? A ILE 108 CG1 108 1 Y 1 A ILE 108 ? CG2 ? A ILE 108 CG2 109 1 Y 1 A ILE 108 ? CD1 ? A ILE 108 CD1 110 1 Y 1 A LYS 114 ? CG ? A LYS 114 CG 111 1 Y 1 A LYS 114 ? CD ? A LYS 114 CD 112 1 Y 1 A LYS 114 ? CE ? A LYS 114 CE 113 1 Y 1 A LYS 114 ? NZ ? A LYS 114 NZ 114 1 Y 1 A ARG 118 ? CG ? A ARG 118 CG 115 1 Y 1 A ARG 118 ? CD ? A ARG 118 CD 116 1 Y 1 A ARG 118 ? NE ? A ARG 118 NE 117 1 Y 1 A ARG 118 ? CZ ? A ARG 118 CZ 118 1 Y 1 A ARG 118 ? NH1 ? A ARG 118 NH1 119 1 Y 1 A ARG 118 ? NH2 ? A ARG 118 NH2 120 1 Y 1 A ASP 133 ? CB ? A ASP 133 CB 121 1 Y 1 A ASP 133 ? CG ? A ASP 133 CG 122 1 Y 1 A ASP 133 ? OD1 ? A ASP 133 OD1 123 1 Y 1 A ASP 133 ? OD2 ? A ASP 133 OD2 124 1 Y 1 A ASN 156 ? CG ? A ASN 156 CG 125 1 Y 1 A ASN 156 ? OD1 ? A ASN 156 OD1 126 1 Y 1 A ASN 156 ? ND2 ? A ASN 156 ND2 127 1 Y 1 A LYS 157 ? CG ? A LYS 157 CG 128 1 Y 1 A LYS 157 ? CD ? A LYS 157 CD 129 1 Y 1 A LYS 157 ? CE ? A LYS 157 CE 130 1 Y 1 A LYS 157 ? NZ ? A LYS 157 NZ 131 1 Y 1 A LYS 160 ? CB ? A LYS 160 CB 132 1 Y 1 A LYS 160 ? CG ? A LYS 160 CG 133 1 Y 1 A LYS 160 ? CD ? A LYS 160 CD 134 1 Y 1 A LYS 160 ? CE ? A LYS 160 CE 135 1 Y 1 A LYS 160 ? NZ ? A LYS 160 NZ 136 1 Y 1 A GLU 161 ? CB ? A GLU 161 CB 137 1 Y 1 A GLU 161 ? CG ? A GLU 161 CG 138 1 Y 1 A GLU 161 ? CD ? A GLU 161 CD 139 1 Y 1 A GLU 161 ? OE1 ? A GLU 161 OE1 140 1 Y 1 A GLU 161 ? OE2 ? A GLU 161 OE2 141 1 Y 1 A GLN 162 ? CB ? A GLN 162 CB 142 1 Y 1 A GLN 162 ? CG ? A GLN 162 CG 143 1 Y 1 A GLN 162 ? CD ? A GLN 162 CD 144 1 Y 1 A GLN 162 ? OE1 ? A GLN 162 OE1 145 1 Y 1 A GLN 162 ? NE2 ? A GLN 162 NE2 146 1 Y 1 A LYS 165 ? CG ? A LYS 165 CG 147 1 Y 1 A LYS 165 ? CD ? A LYS 165 CD 148 1 Y 1 A LYS 165 ? CE ? A LYS 165 CE 149 1 Y 1 A LYS 165 ? NZ ? A LYS 165 NZ 150 1 Y 1 A LYS 174 ? CG ? A LYS 174 CG 151 1 Y 1 A LYS 174 ? CD ? A LYS 174 CD 152 1 Y 1 A LYS 174 ? CE ? A LYS 174 CE 153 1 Y 1 A LYS 174 ? NZ ? A LYS 174 NZ 154 1 Y 1 A LEU 176 ? CG ? A LEU 176 CG 155 1 Y 1 A LEU 176 ? CD1 ? A LEU 176 CD1 156 1 Y 1 A LEU 176 ? CD2 ? A LEU 176 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 1 ? A GLU 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A PHE 3 ? A PHE 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A ASP 82 ? A ASP 82 7 1 Y 1 A PHE 83 ? A PHE 83 8 1 Y 1 A CYS 84 ? A CYS 84 9 1 Y 1 A ASN 123 ? A ASN 123 10 1 Y 1 A GLN 124 ? A GLN 124 11 1 Y 1 A GLY 125 ? A GLY 125 12 1 Y 1 A GLN 126 ? A GLN 126 13 1 Y 1 A THR 127 ? A THR 127 14 1 Y 1 A HIS 150 ? A HIS 150 15 1 Y 1 A SER 151 ? A SER 151 16 1 Y 1 A MSE 195 ? A MSE 195 17 1 Y 1 A LYS 196 ? A LYS 196 18 1 Y 1 A GLU 197 ? A GLU 197 19 1 Y 1 A THR 198 ? A THR 198 20 1 Y 1 A LYS 199 ? A LYS 199 21 1 Y 1 A GLU 200 ? A GLU 200 22 1 Y 1 A LEU 201 ? A LEU 201 23 1 Y 1 A THR 202 ? A THR 202 # _pdbx_reflns_twin.domain_id 1 _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 _pdbx_reflns_twin.type ? _pdbx_reflns_twin.operator -h,-k,l _pdbx_reflns_twin.fraction 0.321 #