data_3LCD # _entry.id 3LCD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LCD RCSB RCSB057103 WWPDB D_1000057103 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LCD _pdbx_database_status.recvd_initial_deposition_date 2010-01-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kamtekar, S.' 1 'Day, J.E.' 2 'Reitz, B.A.' 3 'Mathis, K.J.' 4 'Meyers, M.J.' 5 # _citation.id primary _citation.title 'Structure-based drug design enables conversion of a DFG-in binding CSF-1R kinase inhibitor to a DFG-out binding mode' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 20 _citation.page_first 1543 _citation.page_last 1547 _citation.year 2010 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20137931 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2010.01.078 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Meyers, M.J.' 1 primary 'Pelc, M.' 2 primary 'Kamtekar, S.' 3 primary 'Day, J.' 4 primary 'Poda, G.I.' 5 primary 'Hall, M.K.' 6 primary 'Michener, M.L.' 7 primary 'Reitz, B.A.' 8 primary 'Mathis, K.J.' 9 primary 'Pierce, B.S.' 10 primary 'Parikh, M.D.' 11 primary 'Mischke, D.A.' 12 primary 'Long, S.A.' 13 primary 'Parlow, J.J.' 14 primary 'Anderson, D.R.' 15 primary 'Thorarensen, A.' 16 # _cell.entry_id 3LCD _cell.length_a 57.649 _cell.length_b 74.125 _cell.length_c 91.024 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LCD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Macrophage colony-stimulating factor 1 receptor' 37333.754 1 2.7.10.1 'KID domain replaced by linker' 'Kinase Domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'N~3~-(2,6-dichlorobenzyl)-5-(4-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}phenyl)pyrazine-2,3-diamine' 525.473 1 ? ? ? ? 4 water nat water 18.015 44 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CSF-1-R, Fms proto-oncogene, c-fms' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GVDYKYKQKPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVA VKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELR DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYT VQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ AQEDRRERD ; _entity_poly.pdbx_seq_one_letter_code_can ;GVDYKYKQKPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVA VKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELR DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYT VQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ AQEDRRERD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 ASP n 1 4 TYR n 1 5 LYS n 1 6 TYR n 1 7 LYS n 1 8 GLN n 1 9 LYS n 1 10 PRO n 1 11 LYS n 1 12 TYR n 1 13 GLN n 1 14 VAL n 1 15 ARG n 1 16 TRP n 1 17 LYS n 1 18 ILE n 1 19 ILE n 1 20 GLU n 1 21 SER n 1 22 TYR n 1 23 GLU n 1 24 GLY n 1 25 ASN n 1 26 SER n 1 27 TYR n 1 28 THR n 1 29 PHE n 1 30 ILE n 1 31 ASP n 1 32 PRO n 1 33 THR n 1 34 GLN n 1 35 LEU n 1 36 PRO n 1 37 TYR n 1 38 ASN n 1 39 GLU n 1 40 LYS n 1 41 TRP n 1 42 GLU n 1 43 PHE n 1 44 PRO n 1 45 ARG n 1 46 ASN n 1 47 ASN n 1 48 LEU n 1 49 GLN n 1 50 PHE n 1 51 GLY n 1 52 LYS n 1 53 THR n 1 54 LEU n 1 55 GLY n 1 56 ALA n 1 57 GLY n 1 58 ALA n 1 59 PHE n 1 60 GLY n 1 61 LYS n 1 62 VAL n 1 63 VAL n 1 64 GLU n 1 65 ALA n 1 66 THR n 1 67 ALA n 1 68 PHE n 1 69 GLY n 1 70 LEU n 1 71 GLY n 1 72 LYS n 1 73 GLU n 1 74 ASP n 1 75 ALA n 1 76 VAL n 1 77 LEU n 1 78 LYS n 1 79 VAL n 1 80 ALA n 1 81 VAL n 1 82 LYS n 1 83 MET n 1 84 LEU n 1 85 LYS n 1 86 SER n 1 87 THR n 1 88 ALA n 1 89 HIS n 1 90 ALA n 1 91 ASP n 1 92 GLU n 1 93 LYS n 1 94 GLU n 1 95 ALA n 1 96 LEU n 1 97 MET n 1 98 SER n 1 99 GLU n 1 100 LEU n 1 101 LYS n 1 102 ILE n 1 103 MET n 1 104 SER n 1 105 HIS n 1 106 LEU n 1 107 GLY n 1 108 GLN n 1 109 HIS n 1 110 GLU n 1 111 ASN n 1 112 ILE n 1 113 VAL n 1 114 ASN n 1 115 LEU n 1 116 LEU n 1 117 GLY n 1 118 ALA n 1 119 CYS n 1 120 THR n 1 121 HIS n 1 122 GLY n 1 123 GLY n 1 124 PRO n 1 125 VAL n 1 126 LEU n 1 127 VAL n 1 128 ILE n 1 129 THR n 1 130 GLU n 1 131 TYR n 1 132 CYS n 1 133 CYS n 1 134 TYR n 1 135 GLY n 1 136 ASP n 1 137 LEU n 1 138 LEU n 1 139 ASN n 1 140 PHE n 1 141 LEU n 1 142 ARG n 1 143 ARG n 1 144 LYS n 1 145 ALA n 1 146 GLU n 1 147 ALA n 1 148 ASP n 1 149 LEU n 1 150 ASP n 1 151 LYS n 1 152 GLU n 1 153 ASP n 1 154 GLY n 1 155 ARG n 1 156 PRO n 1 157 LEU n 1 158 GLU n 1 159 LEU n 1 160 ARG n 1 161 ASP n 1 162 LEU n 1 163 LEU n 1 164 HIS n 1 165 PHE n 1 166 SER n 1 167 SER n 1 168 GLN n 1 169 VAL n 1 170 ALA n 1 171 GLN n 1 172 GLY n 1 173 MET n 1 174 ALA n 1 175 PHE n 1 176 LEU n 1 177 ALA n 1 178 SER n 1 179 LYS n 1 180 ASN n 1 181 CYS n 1 182 ILE n 1 183 HIS n 1 184 ARG n 1 185 ASP n 1 186 VAL n 1 187 ALA n 1 188 ALA n 1 189 ARG n 1 190 ASN n 1 191 VAL n 1 192 LEU n 1 193 LEU n 1 194 THR n 1 195 ASN n 1 196 GLY n 1 197 HIS n 1 198 VAL n 1 199 ALA n 1 200 LYS n 1 201 ILE n 1 202 GLY n 1 203 ASP n 1 204 PHE n 1 205 GLY n 1 206 LEU n 1 207 ALA n 1 208 ARG n 1 209 ASP n 1 210 ILE n 1 211 MET n 1 212 ASN n 1 213 ASP n 1 214 SER n 1 215 ASN n 1 216 TYR n 1 217 ILE n 1 218 VAL n 1 219 LYS n 1 220 GLY n 1 221 ASN n 1 222 ALA n 1 223 ARG n 1 224 LEU n 1 225 PRO n 1 226 VAL n 1 227 LYS n 1 228 TRP n 1 229 MET n 1 230 ALA n 1 231 PRO n 1 232 GLU n 1 233 SER n 1 234 ILE n 1 235 PHE n 1 236 ASP n 1 237 CYS n 1 238 VAL n 1 239 TYR n 1 240 THR n 1 241 VAL n 1 242 GLN n 1 243 SER n 1 244 ASP n 1 245 VAL n 1 246 TRP n 1 247 SER n 1 248 TYR n 1 249 GLY n 1 250 ILE n 1 251 LEU n 1 252 LEU n 1 253 TRP n 1 254 GLU n 1 255 ILE n 1 256 PHE n 1 257 SER n 1 258 LEU n 1 259 GLY n 1 260 LEU n 1 261 ASN n 1 262 PRO n 1 263 TYR n 1 264 PRO n 1 265 GLY n 1 266 ILE n 1 267 LEU n 1 268 VAL n 1 269 ASN n 1 270 SER n 1 271 LYS n 1 272 PHE n 1 273 TYR n 1 274 LYS n 1 275 LEU n 1 276 VAL n 1 277 LYS n 1 278 ASP n 1 279 GLY n 1 280 TYR n 1 281 GLN n 1 282 MET n 1 283 ALA n 1 284 GLN n 1 285 PRO n 1 286 ALA n 1 287 PHE n 1 288 ALA n 1 289 PRO n 1 290 LYS n 1 291 ASN n 1 292 ILE n 1 293 TYR n 1 294 SER n 1 295 ILE n 1 296 MET n 1 297 GLN n 1 298 ALA n 1 299 CYS n 1 300 TRP n 1 301 ALA n 1 302 LEU n 1 303 GLU n 1 304 PRO n 1 305 THR n 1 306 HIS n 1 307 ARG n 1 308 PRO n 1 309 THR n 1 310 PHE n 1 311 GLN n 1 312 GLN n 1 313 ILE n 1 314 CYS n 1 315 SER n 1 316 PHE n 1 317 LEU n 1 318 GLN n 1 319 GLU n 1 320 GLN n 1 321 ALA n 1 322 GLN n 1 323 GLU n 1 324 ASP n 1 325 ARG n 1 326 ARG n 1 327 GLU n 1 328 ARG n 1 329 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 4 147 human ? 'CSF-1R, CSF1R, FMS' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ? 1 2 sample ? 148 326 human ? 'CSF-1R, CSF1R, FMS' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CSF1R_HUMAN P07333 1 ;YKYKQKPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKM LKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA ; 538 ? 2 UNP CSF1R_HUMAN P07333 1 ;DLDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVK WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHR PTFQQICSFLQEQAQEDRRERD ; 741 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LCD A 4 ? 147 ? P07333 538 ? 681 ? 538 681 2 2 3LCD A 148 ? 326 ? P07333 741 ? 919 ? 741 919 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LCD GLY A 1 ? UNP P07333 ? ? 'EXPRESSION TAG' 535 1 1 3LCD VAL A 2 ? UNP P07333 ? ? 'EXPRESSION TAG' 536 2 1 3LCD ASP A 3 ? UNP P07333 ? ? 'EXPRESSION TAG' 537 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BDY non-polymer . 'N~3~-(2,6-dichlorobenzyl)-5-(4-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}phenyl)pyrazine-2,3-diamine' ? 'C27 H30 Cl2 N6 O' 525.473 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LCD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_percent_sol 52.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;Equal volumes of protein:ligand (10 mg/ml protein, 1 mM ligand, 200 mM NaCl, 50 mM Potassium dihydrogen phosphate pH 7.5, 5% glycerol, 0.25 mM TCEP) and well solution (0.1 M sodium acetate pH 5.5, 0.2 M Lithium sulfate, 5 mM DTT, 1.5% glycerol, 10-25% PEG 3350) were mixed and set up., VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2009-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond [111]' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07804 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.07804 # _reflns.entry_id 3LCD _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.5 _reflns.number_obs 13462 _reflns.number_all 13960 _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.143 _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.B_iso_Wilson_estimate 44.5 _reflns.pdbx_redundancy 5.65 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 78.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.504 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1062 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LCD _refine.ls_number_reflns_obs 12800 _refine.ls_number_reflns_all 13462 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 96.37 _refine.ls_R_factor_obs 0.21830 _refine.ls_R_factor_all 0.2183 _refine.ls_R_factor_R_work 0.21592 _refine.ls_R_factor_R_free 0.26497 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 662 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.928 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.B_iso_mean 14.703 _refine.aniso_B[1][1] 0.85 _refine.aniso_B[2][2] 2.62 _refine.aniso_B[3][3] -3.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.461 _refine.pdbx_overall_ESU_R_Free 0.292 _refine.overall_SU_ML 0.223 _refine.overall_SU_B 21.149 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3LCD _refine_analyze.Luzzati_coordinate_error_obs 0.3759 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2249 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 2339 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 2356 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1525 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.173 1.974 ? 3200 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.804 3.000 ? 3735 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.871 5.000 ? 289 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.032 24.804 ? 102 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.870 15.000 ? 379 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.934 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 349 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 2645 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 458 'X-RAY DIFFRACTION' ? r_mcbond_it 0.412 1.500 ? 1442 'X-RAY DIFFRACTION' ? r_mcbond_other 0.060 1.500 ? 588 'X-RAY DIFFRACTION' ? r_mcangle_it 0.783 2.000 ? 2305 'X-RAY DIFFRACTION' ? r_scbond_it 1.078 3.000 ? 914 'X-RAY DIFFRACTION' ? r_scangle_it 1.782 4.500 ? 894 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.504 _refine_ls_shell.d_res_low 2.569 _refine_ls_shell.number_reflns_R_work 720 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 75.57 _refine_ls_shell.R_factor_R_free 0.336 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LCD _struct.title 'Inhibitor Bound to A DFG-In structure of the Kinase Domain of CSF-1R' _struct.pdbx_descriptor 'Macrophage colony-stimulating factor 1 receptor (E.C.2.7.10.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LCD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Kinase CFMS CSF-1R CSF tyrosine-kinase colony stimulating factor 1 receptor, ATP-binding, Disulfide bond, Glycoprotein, Immunoglobulin domain, Kinase, Membrane, Nucleotide-binding, Phosphoprotein, Proto-oncogene, Receptor, Transferase, Transmembrane, Tyrosine-protein kinase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The kinase domain fragment is monomeric' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 31 ? LEU A 35 ? ASP A 565 LEU A 569 5 ? 5 HELX_P HELX_P2 2 ASN A 38 ? GLU A 42 ? ASN A 572 GLU A 576 5 ? 5 HELX_P HELX_P3 3 PRO A 44 ? ASN A 46 ? PRO A 578 ASN A 580 5 ? 3 HELX_P HELX_P4 4 HIS A 89 ? GLY A 107 ? HIS A 623 GLY A 641 1 ? 19 HELX_P HELX_P5 5 ASP A 136 ? ASP A 150 ? ASP A 670 ASP A 743 1 ? 15 HELX_P HELX_P6 6 GLU A 158 ? SER A 178 ? GLU A 751 SER A 771 1 ? 21 HELX_P HELX_P7 7 ALA A 187 ? ARG A 189 ? ALA A 780 ARG A 782 5 ? 3 HELX_P HELX_P8 8 ASN A 195 ? HIS A 197 ? ASN A 788 HIS A 790 5 ? 3 HELX_P HELX_P9 9 PRO A 225 ? MET A 229 ? PRO A 818 MET A 822 5 ? 5 HELX_P HELX_P10 10 ALA A 230 ? ASP A 236 ? ALA A 823 ASP A 829 1 ? 7 HELX_P HELX_P11 11 THR A 240 ? SER A 257 ? THR A 833 SER A 850 1 ? 18 HELX_P HELX_P12 12 ASN A 269 ? ASP A 278 ? ASN A 862 ASP A 871 1 ? 10 HELX_P HELX_P13 13 PRO A 289 ? TRP A 300 ? PRO A 882 TRP A 893 1 ? 12 HELX_P HELX_P14 14 GLU A 303 ? ARG A 307 ? GLU A 896 ARG A 900 5 ? 5 HELX_P HELX_P15 15 THR A 309 ? GLN A 320 ? THR A 902 GLN A 913 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ALA _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id ASP _struct_conn.ptnr2_label_seq_id 148 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ALA _struct_conn.ptnr1_auth_seq_id 681 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ASP _struct_conn.ptnr2_auth_seq_id 741 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.330 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 48 ? ALA A 56 ? LEU A 582 ALA A 590 A 2 GLY A 60 ? PHE A 68 ? GLY A 594 PHE A 602 A 3 VAL A 76 ? LEU A 84 ? VAL A 610 LEU A 618 A 4 LEU A 126 ? GLU A 130 ? LEU A 660 GLU A 664 A 5 LEU A 115 ? CYS A 119 ? LEU A 649 CYS A 653 B 1 CYS A 181 ? ILE A 182 ? CYS A 774 ILE A 775 B 2 ARG A 208 ? ASP A 209 ? ARG A 801 ASP A 802 C 1 VAL A 191 ? LEU A 193 ? VAL A 784 LEU A 786 C 2 ALA A 199 ? ILE A 201 ? ALA A 792 ILE A 794 D 1 TYR A 216 ? ILE A 217 ? TYR A 809 ILE A 810 D 2 VAL A 238 ? TYR A 239 ? VAL A 831 TYR A 832 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 51 ? N GLY A 585 O GLU A 64 ? O GLU A 598 A 2 3 N ALA A 67 ? N ALA A 601 O LEU A 77 ? O LEU A 611 A 3 4 N ALA A 80 ? N ALA A 614 O THR A 129 ? O THR A 663 A 4 5 O ILE A 128 ? O ILE A 662 N LEU A 116 ? N LEU A 650 B 1 2 N ILE A 182 ? N ILE A 775 O ARG A 208 ? O ARG A 801 C 1 2 N LEU A 192 ? N LEU A 785 O LYS A 200 ? O LYS A 793 D 1 2 N TYR A 216 ? N TYR A 809 O TYR A 239 ? O TYR A 832 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE BDY A 923' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TYR A 134 ? TYR A 668 . ? 1_555 ? 2 AC1 3 ASN A 195 ? ASN A 788 . ? 1_555 ? 3 AC1 3 GLY A 196 ? GLY A 789 . ? 1_555 ? 4 AC2 7 ARG A 184 ? ARG A 777 . ? 1_555 ? 5 AC2 7 ARG A 208 ? ARG A 801 . ? 1_555 ? 6 AC2 7 TYR A 216 ? TYR A 809 . ? 1_555 ? 7 AC2 7 VAL A 218 ? VAL A 811 . ? 1_555 ? 8 AC2 7 LYS A 219 ? LYS A 812 . ? 1_555 ? 9 AC2 7 GLY A 220 ? GLY A 813 . ? 1_555 ? 10 AC2 7 ALA A 222 ? ALA A 815 . ? 1_555 ? 11 AC3 14 HOH E . ? HOH A 14 . ? 1_555 ? 12 AC3 14 HOH E . ? HOH A 47 . ? 1_555 ? 13 AC3 14 HOH E . ? HOH A 65 . ? 1_555 ? 14 AC3 14 LEU A 54 ? LEU A 588 . ? 1_555 ? 15 AC3 14 VAL A 62 ? VAL A 596 . ? 1_555 ? 16 AC3 14 ALA A 80 ? ALA A 614 . ? 1_555 ? 17 AC3 14 GLU A 130 ? GLU A 664 . ? 1_555 ? 18 AC3 14 TYR A 131 ? TYR A 665 . ? 1_555 ? 19 AC3 14 CYS A 132 ? CYS A 666 . ? 1_555 ? 20 AC3 14 TYR A 134 ? TYR A 668 . ? 1_555 ? 21 AC3 14 GLY A 135 ? GLY A 669 . ? 1_555 ? 22 AC3 14 ARG A 189 ? ARG A 782 . ? 1_555 ? 23 AC3 14 LEU A 192 ? LEU A 785 . ? 1_555 ? 24 AC3 14 ASP A 203 ? ASP A 796 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LCD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LCD _atom_sites.fract_transf_matrix[1][1] 0.017346 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013491 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010986 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 535 ? ? ? A . n A 1 2 VAL 2 536 ? ? ? A . n A 1 3 ASP 3 537 ? ? ? A . n A 1 4 TYR 4 538 ? ? ? A . n A 1 5 LYS 5 539 ? ? ? A . n A 1 6 TYR 6 540 ? ? ? A . n A 1 7 LYS 7 541 ? ? ? A . n A 1 8 GLN 8 542 ? ? ? A . n A 1 9 LYS 9 543 ? ? ? A . n A 1 10 PRO 10 544 ? ? ? A . n A 1 11 LYS 11 545 ? ? ? A . n A 1 12 TYR 12 546 ? ? ? A . n A 1 13 GLN 13 547 ? ? ? A . n A 1 14 VAL 14 548 ? ? ? A . n A 1 15 ARG 15 549 ? ? ? A . n A 1 16 TRP 16 550 ? ? ? A . n A 1 17 LYS 17 551 ? ? ? A . n A 1 18 ILE 18 552 ? ? ? A . n A 1 19 ILE 19 553 ? ? ? A . n A 1 20 GLU 20 554 ? ? ? A . n A 1 21 SER 21 555 ? ? ? A . n A 1 22 TYR 22 556 ? ? ? A . n A 1 23 GLU 23 557 ? ? ? A . n A 1 24 GLY 24 558 558 GLY GLY A . n A 1 25 ASN 25 559 559 ASN ASN A . n A 1 26 SER 26 560 560 SER SER A . n A 1 27 TYR 27 561 561 TYR TYR A . n A 1 28 THR 28 562 562 THR THR A . n A 1 29 PHE 29 563 563 PHE PHE A . n A 1 30 ILE 30 564 564 ILE ILE A . n A 1 31 ASP 31 565 565 ASP ASP A . n A 1 32 PRO 32 566 566 PRO PRO A . n A 1 33 THR 33 567 567 THR THR A . n A 1 34 GLN 34 568 568 GLN GLN A . n A 1 35 LEU 35 569 569 LEU LEU A . n A 1 36 PRO 36 570 570 PRO PRO A . n A 1 37 TYR 37 571 571 TYR TYR A . n A 1 38 ASN 38 572 572 ASN ASN A . n A 1 39 GLU 39 573 573 GLU GLU A . n A 1 40 LYS 40 574 574 LYS LYS A . n A 1 41 TRP 41 575 575 TRP TRP A . n A 1 42 GLU 42 576 576 GLU GLU A . n A 1 43 PHE 43 577 577 PHE PHE A . n A 1 44 PRO 44 578 578 PRO PRO A . n A 1 45 ARG 45 579 579 ARG ARG A . n A 1 46 ASN 46 580 580 ASN ASN A . n A 1 47 ASN 47 581 581 ASN ASN A . n A 1 48 LEU 48 582 582 LEU LEU A . n A 1 49 GLN 49 583 583 GLN GLN A . n A 1 50 PHE 50 584 584 PHE PHE A . n A 1 51 GLY 51 585 585 GLY GLY A . n A 1 52 LYS 52 586 586 LYS LYS A . n A 1 53 THR 53 587 587 THR THR A . n A 1 54 LEU 54 588 588 LEU LEU A . n A 1 55 GLY 55 589 589 GLY GLY A . n A 1 56 ALA 56 590 590 ALA ALA A . n A 1 57 GLY 57 591 591 GLY GLY A . n A 1 58 ALA 58 592 592 ALA ALA A . n A 1 59 PHE 59 593 593 PHE PHE A . n A 1 60 GLY 60 594 594 GLY GLY A . n A 1 61 LYS 61 595 595 LYS LYS A . n A 1 62 VAL 62 596 596 VAL VAL A . n A 1 63 VAL 63 597 597 VAL VAL A . n A 1 64 GLU 64 598 598 GLU GLU A . n A 1 65 ALA 65 599 599 ALA ALA A . n A 1 66 THR 66 600 600 THR THR A . n A 1 67 ALA 67 601 601 ALA ALA A . n A 1 68 PHE 68 602 602 PHE PHE A . n A 1 69 GLY 69 603 603 GLY GLY A . n A 1 70 LEU 70 604 604 LEU LEU A . n A 1 71 GLY 71 605 605 GLY GLY A . n A 1 72 LYS 72 606 606 LYS LYS A . n A 1 73 GLU 73 607 607 GLU GLU A . n A 1 74 ASP 74 608 608 ASP ASP A . n A 1 75 ALA 75 609 609 ALA ALA A . n A 1 76 VAL 76 610 610 VAL VAL A . n A 1 77 LEU 77 611 611 LEU LEU A . n A 1 78 LYS 78 612 612 LYS LYS A . n A 1 79 VAL 79 613 613 VAL VAL A . n A 1 80 ALA 80 614 614 ALA ALA A . n A 1 81 VAL 81 615 615 VAL VAL A . n A 1 82 LYS 82 616 616 LYS LYS A . n A 1 83 MET 83 617 617 MET MET A . n A 1 84 LEU 84 618 618 LEU LEU A . n A 1 85 LYS 85 619 619 LYS LYS A . n A 1 86 SER 86 620 620 SER SER A . n A 1 87 THR 87 621 621 THR THR A . n A 1 88 ALA 88 622 622 ALA ALA A . n A 1 89 HIS 89 623 623 HIS HIS A . n A 1 90 ALA 90 624 624 ALA ALA A . n A 1 91 ASP 91 625 625 ASP ASP A . n A 1 92 GLU 92 626 626 GLU GLU A . n A 1 93 LYS 93 627 627 LYS LYS A . n A 1 94 GLU 94 628 628 GLU GLU A . n A 1 95 ALA 95 629 629 ALA ALA A . n A 1 96 LEU 96 630 630 LEU LEU A . n A 1 97 MET 97 631 631 MET MET A . n A 1 98 SER 98 632 632 SER SER A . n A 1 99 GLU 99 633 633 GLU GLU A . n A 1 100 LEU 100 634 634 LEU LEU A . n A 1 101 LYS 101 635 635 LYS LYS A . n A 1 102 ILE 102 636 636 ILE ILE A . n A 1 103 MET 103 637 637 MET MET A . n A 1 104 SER 104 638 638 SER SER A . n A 1 105 HIS 105 639 639 HIS HIS A . n A 1 106 LEU 106 640 640 LEU LEU A . n A 1 107 GLY 107 641 641 GLY GLY A . n A 1 108 GLN 108 642 642 GLN GLN A . n A 1 109 HIS 109 643 643 HIS HIS A . n A 1 110 GLU 110 644 644 GLU GLU A . n A 1 111 ASN 111 645 645 ASN ASN A . n A 1 112 ILE 112 646 646 ILE ILE A . n A 1 113 VAL 113 647 647 VAL VAL A . n A 1 114 ASN 114 648 648 ASN ASN A . n A 1 115 LEU 115 649 649 LEU LEU A . n A 1 116 LEU 116 650 650 LEU LEU A . n A 1 117 GLY 117 651 651 GLY GLY A . n A 1 118 ALA 118 652 652 ALA ALA A . n A 1 119 CYS 119 653 653 CYS CYS A . n A 1 120 THR 120 654 654 THR THR A . n A 1 121 HIS 121 655 655 HIS HIS A . n A 1 122 GLY 122 656 656 GLY GLY A . n A 1 123 GLY 123 657 657 GLY GLY A . n A 1 124 PRO 124 658 658 PRO PRO A . n A 1 125 VAL 125 659 659 VAL VAL A . n A 1 126 LEU 126 660 660 LEU LEU A . n A 1 127 VAL 127 661 661 VAL VAL A . n A 1 128 ILE 128 662 662 ILE ILE A . n A 1 129 THR 129 663 663 THR THR A . n A 1 130 GLU 130 664 664 GLU GLU A . n A 1 131 TYR 131 665 665 TYR TYR A . n A 1 132 CYS 132 666 666 CYS CYS A . n A 1 133 CYS 133 667 667 CYS CYS A . n A 1 134 TYR 134 668 668 TYR TYR A . n A 1 135 GLY 135 669 669 GLY GLY A . n A 1 136 ASP 136 670 670 ASP ASP A . n A 1 137 LEU 137 671 671 LEU LEU A . n A 1 138 LEU 138 672 672 LEU LEU A . n A 1 139 ASN 139 673 673 ASN ASN A . n A 1 140 PHE 140 674 674 PHE PHE A . n A 1 141 LEU 141 675 675 LEU LEU A . n A 1 142 ARG 142 676 676 ARG ARG A . n A 1 143 ARG 143 677 677 ARG ARG A . n A 1 144 LYS 144 678 678 LYS LYS A . n A 1 145 ALA 145 679 679 ALA ALA A . n A 1 146 GLU 146 680 680 GLU GLU A . n A 1 147 ALA 147 681 681 ALA ALA A . n A 1 148 ASP 148 741 741 ASP ASP A . n A 1 149 LEU 149 742 742 LEU LEU A . n A 1 150 ASP 150 743 743 ASP ASP A . n A 1 151 LYS 151 744 ? ? ? A . n A 1 152 GLU 152 745 ? ? ? A . n A 1 153 ASP 153 746 ? ? ? A . n A 1 154 GLY 154 747 ? ? ? A . n A 1 155 ARG 155 748 ? ? ? A . n A 1 156 PRO 156 749 749 PRO PRO A . n A 1 157 LEU 157 750 750 LEU LEU A . n A 1 158 GLU 158 751 751 GLU GLU A . n A 1 159 LEU 159 752 752 LEU LEU A . n A 1 160 ARG 160 753 753 ARG ARG A . n A 1 161 ASP 161 754 754 ASP ASP A . n A 1 162 LEU 162 755 755 LEU LEU A . n A 1 163 LEU 163 756 756 LEU LEU A . n A 1 164 HIS 164 757 757 HIS HIS A . n A 1 165 PHE 165 758 758 PHE PHE A . n A 1 166 SER 166 759 759 SER SER A . n A 1 167 SER 167 760 760 SER SER A . n A 1 168 GLN 168 761 761 GLN GLN A . n A 1 169 VAL 169 762 762 VAL VAL A . n A 1 170 ALA 170 763 763 ALA ALA A . n A 1 171 GLN 171 764 764 GLN GLN A . n A 1 172 GLY 172 765 765 GLY GLY A . n A 1 173 MET 173 766 766 MET MET A . n A 1 174 ALA 174 767 767 ALA ALA A . n A 1 175 PHE 175 768 768 PHE PHE A . n A 1 176 LEU 176 769 769 LEU LEU A . n A 1 177 ALA 177 770 770 ALA ALA A . n A 1 178 SER 178 771 771 SER SER A . n A 1 179 LYS 179 772 772 LYS LYS A . n A 1 180 ASN 180 773 773 ASN ASN A . n A 1 181 CYS 181 774 774 CYS CYS A . n A 1 182 ILE 182 775 775 ILE ILE A . n A 1 183 HIS 183 776 776 HIS HIS A . n A 1 184 ARG 184 777 777 ARG ARG A . n A 1 185 ASP 185 778 778 ASP ASP A . n A 1 186 VAL 186 779 779 VAL VAL A . n A 1 187 ALA 187 780 780 ALA ALA A . n A 1 188 ALA 188 781 781 ALA ALA A . n A 1 189 ARG 189 782 782 ARG ARG A . n A 1 190 ASN 190 783 783 ASN ASN A . n A 1 191 VAL 191 784 784 VAL VAL A . n A 1 192 LEU 192 785 785 LEU LEU A . n A 1 193 LEU 193 786 786 LEU LEU A . n A 1 194 THR 194 787 787 THR THR A . n A 1 195 ASN 195 788 788 ASN ASN A . n A 1 196 GLY 196 789 789 GLY GLY A . n A 1 197 HIS 197 790 790 HIS HIS A . n A 1 198 VAL 198 791 791 VAL VAL A . n A 1 199 ALA 199 792 792 ALA ALA A . n A 1 200 LYS 200 793 793 LYS LYS A . n A 1 201 ILE 201 794 794 ILE ILE A . n A 1 202 GLY 202 795 795 GLY GLY A . n A 1 203 ASP 203 796 796 ASP ASP A . n A 1 204 PHE 204 797 797 PHE PHE A . n A 1 205 GLY 205 798 798 GLY GLY A . n A 1 206 LEU 206 799 799 LEU LEU A . n A 1 207 ALA 207 800 800 ALA ALA A . n A 1 208 ARG 208 801 801 ARG ARG A . n A 1 209 ASP 209 802 802 ASP ASP A . n A 1 210 ILE 210 803 803 ILE ILE A . n A 1 211 MET 211 804 804 MET MET A . n A 1 212 ASN 212 805 ? ? ? A . n A 1 213 ASP 213 806 ? ? ? A . n A 1 214 SER 214 807 807 SER SER A . n A 1 215 ASN 215 808 808 ASN ASN A . n A 1 216 TYR 216 809 809 TYR TYR A . n A 1 217 ILE 217 810 810 ILE ILE A . n A 1 218 VAL 218 811 811 VAL VAL A . n A 1 219 LYS 219 812 812 LYS LYS A . n A 1 220 GLY 220 813 813 GLY GLY A . n A 1 221 ASN 221 814 814 ASN ASN A . n A 1 222 ALA 222 815 815 ALA ALA A . n A 1 223 ARG 223 816 816 ARG ARG A . n A 1 224 LEU 224 817 817 LEU LEU A . n A 1 225 PRO 225 818 818 PRO PRO A . n A 1 226 VAL 226 819 819 VAL VAL A . n A 1 227 LYS 227 820 820 LYS LYS A . n A 1 228 TRP 228 821 821 TRP TRP A . n A 1 229 MET 229 822 822 MET MET A . n A 1 230 ALA 230 823 823 ALA ALA A . n A 1 231 PRO 231 824 824 PRO PRO A . n A 1 232 GLU 232 825 825 GLU GLU A . n A 1 233 SER 233 826 826 SER SER A . n A 1 234 ILE 234 827 827 ILE ILE A . n A 1 235 PHE 235 828 828 PHE PHE A . n A 1 236 ASP 236 829 829 ASP ASP A . n A 1 237 CYS 237 830 830 CYS CYS A . n A 1 238 VAL 238 831 831 VAL VAL A . n A 1 239 TYR 239 832 832 TYR TYR A . n A 1 240 THR 240 833 833 THR THR A . n A 1 241 VAL 241 834 834 VAL VAL A . n A 1 242 GLN 242 835 835 GLN GLN A . n A 1 243 SER 243 836 836 SER SER A . n A 1 244 ASP 244 837 837 ASP ASP A . n A 1 245 VAL 245 838 838 VAL VAL A . n A 1 246 TRP 246 839 839 TRP TRP A . n A 1 247 SER 247 840 840 SER SER A . n A 1 248 TYR 248 841 841 TYR TYR A . n A 1 249 GLY 249 842 842 GLY GLY A . n A 1 250 ILE 250 843 843 ILE ILE A . n A 1 251 LEU 251 844 844 LEU LEU A . n A 1 252 LEU 252 845 845 LEU LEU A . n A 1 253 TRP 253 846 846 TRP TRP A . n A 1 254 GLU 254 847 847 GLU GLU A . n A 1 255 ILE 255 848 848 ILE ILE A . n A 1 256 PHE 256 849 849 PHE PHE A . n A 1 257 SER 257 850 850 SER SER A . n A 1 258 LEU 258 851 851 LEU LEU A . n A 1 259 GLY 259 852 852 GLY GLY A . n A 1 260 LEU 260 853 853 LEU LEU A . n A 1 261 ASN 261 854 854 ASN ASN A . n A 1 262 PRO 262 855 855 PRO PRO A . n A 1 263 TYR 263 856 856 TYR TYR A . n A 1 264 PRO 264 857 857 PRO PRO A . n A 1 265 GLY 265 858 858 GLY GLY A . n A 1 266 ILE 266 859 859 ILE ILE A . n A 1 267 LEU 267 860 860 LEU LEU A . n A 1 268 VAL 268 861 861 VAL VAL A . n A 1 269 ASN 269 862 862 ASN ASN A . n A 1 270 SER 270 863 863 SER SER A . n A 1 271 LYS 271 864 864 LYS LYS A . n A 1 272 PHE 272 865 865 PHE PHE A . n A 1 273 TYR 273 866 866 TYR TYR A . n A 1 274 LYS 274 867 867 LYS LYS A . n A 1 275 LEU 275 868 868 LEU LEU A . n A 1 276 VAL 276 869 869 VAL VAL A . n A 1 277 LYS 277 870 870 LYS LYS A . n A 1 278 ASP 278 871 871 ASP ASP A . n A 1 279 GLY 279 872 872 GLY GLY A . n A 1 280 TYR 280 873 873 TYR TYR A . n A 1 281 GLN 281 874 874 GLN GLN A . n A 1 282 MET 282 875 875 MET MET A . n A 1 283 ALA 283 876 876 ALA ALA A . n A 1 284 GLN 284 877 877 GLN GLN A . n A 1 285 PRO 285 878 878 PRO PRO A . n A 1 286 ALA 286 879 879 ALA ALA A . n A 1 287 PHE 287 880 880 PHE PHE A . n A 1 288 ALA 288 881 881 ALA ALA A . n A 1 289 PRO 289 882 882 PRO PRO A . n A 1 290 LYS 290 883 883 LYS LYS A . n A 1 291 ASN 291 884 884 ASN ASN A . n A 1 292 ILE 292 885 885 ILE ILE A . n A 1 293 TYR 293 886 886 TYR TYR A . n A 1 294 SER 294 887 887 SER SER A . n A 1 295 ILE 295 888 888 ILE ILE A . n A 1 296 MET 296 889 889 MET MET A . n A 1 297 GLN 297 890 890 GLN GLN A . n A 1 298 ALA 298 891 891 ALA ALA A . n A 1 299 CYS 299 892 892 CYS CYS A . n A 1 300 TRP 300 893 893 TRP TRP A . n A 1 301 ALA 301 894 894 ALA ALA A . n A 1 302 LEU 302 895 895 LEU LEU A . n A 1 303 GLU 303 896 896 GLU GLU A . n A 1 304 PRO 304 897 897 PRO PRO A . n A 1 305 THR 305 898 898 THR THR A . n A 1 306 HIS 306 899 899 HIS HIS A . n A 1 307 ARG 307 900 900 ARG ARG A . n A 1 308 PRO 308 901 901 PRO PRO A . n A 1 309 THR 309 902 902 THR THR A . n A 1 310 PHE 310 903 903 PHE PHE A . n A 1 311 GLN 311 904 904 GLN GLN A . n A 1 312 GLN 312 905 905 GLN GLN A . n A 1 313 ILE 313 906 906 ILE ILE A . n A 1 314 CYS 314 907 907 CYS CYS A . n A 1 315 SER 315 908 908 SER SER A . n A 1 316 PHE 316 909 909 PHE PHE A . n A 1 317 LEU 317 910 910 LEU LEU A . n A 1 318 GLN 318 911 911 GLN GLN A . n A 1 319 GLU 319 912 912 GLU GLU A . n A 1 320 GLN 320 913 913 GLN GLN A . n A 1 321 ALA 321 914 ? ? ? A . n A 1 322 GLN 322 915 ? ? ? A . n A 1 323 GLU 323 916 ? ? ? A . n A 1 324 ASP 324 917 ? ? ? A . n A 1 325 ARG 325 918 ? ? ? A . n A 1 326 ARG 326 919 ? ? ? A . n A 1 327 GLU 327 920 ? ? ? A . n A 1 328 ARG 328 921 ? ? ? A . n A 1 329 ASP 329 922 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 3 BDY 1 923 1 BDY BDY A . E 4 HOH 1 3 3 HOH HOH A . E 4 HOH 2 5 5 HOH HOH A . E 4 HOH 3 7 7 HOH HOH A . E 4 HOH 4 8 8 HOH HOH A . E 4 HOH 5 9 9 HOH HOH A . E 4 HOH 6 11 11 HOH HOH A . E 4 HOH 7 13 13 HOH HOH A . E 4 HOH 8 14 14 HOH HOH A . E 4 HOH 9 15 15 HOH HOH A . E 4 HOH 10 16 16 HOH HOH A . E 4 HOH 11 20 20 HOH HOH A . E 4 HOH 12 21 21 HOH HOH A . E 4 HOH 13 22 22 HOH HOH A . E 4 HOH 14 23 23 HOH HOH A . E 4 HOH 15 24 24 HOH HOH A . E 4 HOH 16 27 27 HOH HOH A . E 4 HOH 17 29 29 HOH HOH A . E 4 HOH 18 30 30 HOH HOH A . E 4 HOH 19 31 31 HOH HOH A . E 4 HOH 20 34 34 HOH HOH A . E 4 HOH 21 37 37 HOH HOH A . E 4 HOH 22 38 38 HOH HOH A . E 4 HOH 23 39 39 HOH HOH A . E 4 HOH 24 40 40 HOH HOH A . E 4 HOH 25 41 41 HOH HOH A . E 4 HOH 26 45 45 HOH HOH A . E 4 HOH 27 46 46 HOH HOH A . E 4 HOH 28 47 47 HOH HOH A . E 4 HOH 29 48 48 HOH HOH A . E 4 HOH 30 50 50 HOH HOH A . E 4 HOH 31 51 51 HOH HOH A . E 4 HOH 32 58 58 HOH HOH A . E 4 HOH 33 59 59 HOH HOH A . E 4 HOH 34 60 60 HOH HOH A . E 4 HOH 35 62 62 HOH HOH A . E 4 HOH 36 65 65 HOH HOH A . E 4 HOH 37 67 67 HOH HOH A . E 4 HOH 38 70 70 HOH HOH A . E 4 HOH 39 72 72 HOH HOH A . E 4 HOH 40 73 73 HOH HOH A . E 4 HOH 41 75 75 HOH HOH A . E 4 HOH 42 76 76 HOH HOH A . E 4 HOH 43 77 77 HOH HOH A . E 4 HOH 44 924 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_detector 2 3 'Structure model' entity_src_gen 3 3 'Structure model' software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_detector.detector' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -17.8636 15.2414 -18.2073 0.1143 0.2014 0.1161 0.0267 -0.0277 0.0173 1.4613 4.0093 3.8283 1.2006 1.0483 1.5009 -0.0911 0.0517 0.2421 -0.2627 -0.0338 0.3366 -0.2122 -0.0896 0.1249 'X-RAY DIFFRACTION' 2 ? refined -25.4038 0.0035 0.1204 0.0545 0.0657 0.0268 0.0190 -0.0269 -0.0135 3.2779 2.3065 4.1515 0.4900 -1.1742 0.3519 -0.0284 -0.0076 -0.0472 -0.0115 -0.0414 0.1252 0.2026 0.0840 0.0698 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 560 ? ? A 665 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 666 ? ? A 930 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 778 ? ? -147.46 45.93 2 1 ASP A 796 ? ? 58.72 85.48 3 1 PHE A 797 ? ? -99.90 30.97 4 1 ASN A 814 ? ? 78.95 -15.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 563 ? CG ? A PHE 29 CG 2 1 Y 1 A PHE 563 ? CD1 ? A PHE 29 CD1 3 1 Y 1 A PHE 563 ? CD2 ? A PHE 29 CD2 4 1 Y 1 A PHE 563 ? CE1 ? A PHE 29 CE1 5 1 Y 1 A PHE 563 ? CE2 ? A PHE 29 CE2 6 1 Y 1 A PHE 563 ? CZ ? A PHE 29 CZ 7 1 Y 1 A PHE 593 ? CG ? A PHE 59 CG 8 1 Y 1 A PHE 593 ? CD1 ? A PHE 59 CD1 9 1 Y 1 A PHE 593 ? CD2 ? A PHE 59 CD2 10 1 Y 1 A PHE 593 ? CE1 ? A PHE 59 CE1 11 1 Y 1 A PHE 593 ? CE2 ? A PHE 59 CE2 12 1 Y 1 A PHE 593 ? CZ ? A PHE 59 CZ 13 1 Y 1 A LYS 619 ? CG ? A LYS 85 CG 14 1 Y 1 A LYS 619 ? CD ? A LYS 85 CD 15 1 Y 1 A LYS 619 ? CE ? A LYS 85 CE 16 1 Y 1 A LYS 619 ? NZ ? A LYS 85 NZ 17 1 Y 1 A ARG 753 ? CG ? A ARG 160 CG 18 1 Y 1 A ARG 753 ? CD ? A ARG 160 CD 19 1 Y 1 A ARG 753 ? NE ? A ARG 160 NE 20 1 Y 1 A ARG 753 ? CZ ? A ARG 160 CZ 21 1 Y 1 A ARG 753 ? NH1 ? A ARG 160 NH1 22 1 Y 1 A ARG 753 ? NH2 ? A ARG 160 NH2 23 1 Y 1 A LYS 812 ? CG ? A LYS 219 CG 24 1 Y 1 A LYS 812 ? CD ? A LYS 219 CD 25 1 Y 1 A LYS 812 ? CE ? A LYS 219 CE 26 1 Y 1 A LYS 812 ? NZ ? A LYS 219 NZ 27 1 Y 1 A LYS 864 ? CG ? A LYS 271 CG 28 1 Y 1 A LYS 864 ? CD ? A LYS 271 CD 29 1 Y 1 A LYS 864 ? CE ? A LYS 271 CE 30 1 Y 1 A LYS 864 ? NZ ? A LYS 271 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 535 ? A GLY 1 2 1 Y 1 A VAL 536 ? A VAL 2 3 1 Y 1 A ASP 537 ? A ASP 3 4 1 Y 1 A TYR 538 ? A TYR 4 5 1 Y 1 A LYS 539 ? A LYS 5 6 1 Y 1 A TYR 540 ? A TYR 6 7 1 Y 1 A LYS 541 ? A LYS 7 8 1 Y 1 A GLN 542 ? A GLN 8 9 1 Y 1 A LYS 543 ? A LYS 9 10 1 Y 1 A PRO 544 ? A PRO 10 11 1 Y 1 A LYS 545 ? A LYS 11 12 1 Y 1 A TYR 546 ? A TYR 12 13 1 Y 1 A GLN 547 ? A GLN 13 14 1 Y 1 A VAL 548 ? A VAL 14 15 1 Y 1 A ARG 549 ? A ARG 15 16 1 Y 1 A TRP 550 ? A TRP 16 17 1 Y 1 A LYS 551 ? A LYS 17 18 1 Y 1 A ILE 552 ? A ILE 18 19 1 Y 1 A ILE 553 ? A ILE 19 20 1 Y 1 A GLU 554 ? A GLU 20 21 1 Y 1 A SER 555 ? A SER 21 22 1 Y 1 A TYR 556 ? A TYR 22 23 1 Y 1 A GLU 557 ? A GLU 23 24 1 Y 1 A LYS 744 ? A LYS 151 25 1 Y 1 A GLU 745 ? A GLU 152 26 1 Y 1 A ASP 746 ? A ASP 153 27 1 Y 1 A GLY 747 ? A GLY 154 28 1 Y 1 A ARG 748 ? A ARG 155 29 1 Y 1 A ASN 805 ? A ASN 212 30 1 Y 1 A ASP 806 ? A ASP 213 31 1 Y 1 A ALA 914 ? A ALA 321 32 1 Y 1 A GLN 915 ? A GLN 322 33 1 Y 1 A GLU 916 ? A GLU 323 34 1 Y 1 A ASP 917 ? A ASP 324 35 1 Y 1 A ARG 918 ? A ARG 325 36 1 Y 1 A ARG 919 ? A ARG 326 37 1 Y 1 A GLU 920 ? A GLU 327 38 1 Y 1 A ARG 921 ? A ARG 328 39 1 Y 1 A ASP 922 ? A ASP 329 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'N~3~-(2,6-dichlorobenzyl)-5-(4-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}phenyl)pyrazine-2,3-diamine' BDY 4 water HOH #