data_3LDT # _entry.id 3LDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LDT RCSB RCSB057153 WWPDB D_1000057153 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11276d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LDT _pdbx_database_status.recvd_initial_deposition_date 2010-01-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Satyanarayana, L.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal structure of an Outer membrane protein(OmpA)from Legionella pneumophila' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Satyanarayana, L.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3LDT _cell.length_a 78.062 _cell.length_b 78.062 _cell.length_c 140.044 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LDT _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer membrane protein, OmpA family protein' 19227.178 1 ? ? 'C-terminal fragment' ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 70 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLSGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYF(MSE)FSSPRLNEICYPG LNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAET(MSE)(MSE)TFLWANGIAAKRLKAEGYGDKNAISDNAI IHGSAQNRRIEIQWFTSEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLL NFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFT SEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11276d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 GLY n 1 6 THR n 1 7 LEU n 1 8 ILE n 1 9 GLY n 1 10 ALA n 1 11 ALA n 1 12 ALA n 1 13 GLY n 1 14 GLY n 1 15 THR n 1 16 VAL n 1 17 GLY n 1 18 LEU n 1 19 VAL n 1 20 ALA n 1 21 SER n 1 22 ILE n 1 23 TYR n 1 24 ARG n 1 25 ASP n 1 26 SER n 1 27 LYS n 1 28 ARG n 1 29 LYS n 1 30 ILE n 1 31 ILE n 1 32 ARG n 1 33 ASP n 1 34 LEU n 1 35 GLN n 1 36 LYS n 1 37 GLN n 1 38 ASP n 1 39 ILE n 1 40 GLN n 1 41 TYR n 1 42 VAL n 1 43 GLU n 1 44 TYR n 1 45 GLY n 1 46 ASP n 1 47 THR n 1 48 ARG n 1 49 THR n 1 50 LEU n 1 51 ILE n 1 52 ILE n 1 53 PRO n 1 54 THR n 1 55 ASP n 1 56 LYS n 1 57 TYR n 1 58 PHE n 1 59 MSE n 1 60 PHE n 1 61 SER n 1 62 SER n 1 63 PRO n 1 64 ARG n 1 65 LEU n 1 66 ASN n 1 67 GLU n 1 68 ILE n 1 69 CYS n 1 70 TYR n 1 71 PRO n 1 72 GLY n 1 73 LEU n 1 74 ASN n 1 75 ASN n 1 76 VAL n 1 77 ILE n 1 78 ARG n 1 79 LEU n 1 80 LEU n 1 81 ASN n 1 82 PHE n 1 83 TYR n 1 84 PRO n 1 85 GLN n 1 86 SER n 1 87 THR n 1 88 ILE n 1 89 TYR n 1 90 VAL n 1 91 ALA n 1 92 GLY n 1 93 PHE n 1 94 THR n 1 95 ASP n 1 96 ASN n 1 97 VAL n 1 98 GLY n 1 99 SER n 1 100 ARG n 1 101 SER n 1 102 HIS n 1 103 LYS n 1 104 ARG n 1 105 LYS n 1 106 LEU n 1 107 SER n 1 108 GLN n 1 109 ALA n 1 110 GLN n 1 111 ALA n 1 112 GLU n 1 113 THR n 1 114 MSE n 1 115 MSE n 1 116 THR n 1 117 PHE n 1 118 LEU n 1 119 TRP n 1 120 ALA n 1 121 ASN n 1 122 GLY n 1 123 ILE n 1 124 ALA n 1 125 ALA n 1 126 LYS n 1 127 ARG n 1 128 LEU n 1 129 LYS n 1 130 ALA n 1 131 GLU n 1 132 GLY n 1 133 TYR n 1 134 GLY n 1 135 ASP n 1 136 LYS n 1 137 ASN n 1 138 ALA n 1 139 ILE n 1 140 SER n 1 141 ASP n 1 142 ASN n 1 143 ALA n 1 144 ILE n 1 145 ILE n 1 146 HIS n 1 147 GLY n 1 148 SER n 1 149 ALA n 1 150 GLN n 1 151 ASN n 1 152 ARG n 1 153 ARG n 1 154 ILE n 1 155 GLU n 1 156 ILE n 1 157 GLN n 1 158 TRP n 1 159 PHE n 1 160 THR n 1 161 SER n 1 162 GLU n 1 163 GLY n 1 164 HIS n 1 165 HIS n 1 166 HIS n 1 167 HIS n 1 168 HIS n 1 169 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene '3080577, lpg0657' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'subsp. pneumophila, Philadelphia 1 / ATCC 33152 / DSM 7513)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'TOP 10 (INVITROGEN)' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Legionella pneumophila' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272624 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3-(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5ZXS4_LEGPH _struct_ref.pdbx_db_accession Q5ZXS4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFY PQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTS ; _struct_ref.pdbx_align_begin 79 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LDT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5ZXS4 _struct_ref_seq.db_align_beg 79 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 79 _struct_ref_seq.pdbx_auth_seq_align_end 236 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LDT MSE A 1 ? UNP Q5ZXS4 ? ? 'expression tag' 76 1 1 3LDT SER A 2 ? UNP Q5ZXS4 ? ? 'expression tag' 77 2 1 3LDT LEU A 3 ? UNP Q5ZXS4 ? ? 'expression tag' 78 3 1 3LDT GLU A 162 ? UNP Q5ZXS4 ? ? 'expression tag' 237 4 1 3LDT GLY A 163 ? UNP Q5ZXS4 ? ? 'expression tag' 238 5 1 3LDT HIS A 164 ? UNP Q5ZXS4 ? ? 'expression tag' 239 6 1 3LDT HIS A 165 ? UNP Q5ZXS4 ? ? 'expression tag' 240 7 1 3LDT HIS A 166 ? UNP Q5ZXS4 ? ? 'expression tag' 241 8 1 3LDT HIS A 167 ? UNP Q5ZXS4 ? ? 'expression tag' 242 9 1 3LDT HIS A 168 ? UNP Q5ZXS4 ? ? 'expression tag' 243 10 1 3LDT HIS A 169 ? UNP Q5ZXS4 ? ? 'expression tag' 244 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LDT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_percent_sol 55.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '15% Isopropanol, 1.3M Ammonium Sulpahte , pH 7.0, EVAPORATION, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-11-26 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 3LDT _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.30 _reflns.number_obs 10001 _reflns.number_all 10001 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 27.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.128 _reflns_shell.meanI_over_sigI_obs 16.8 _reflns_shell.pdbx_redundancy 29.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 966 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LDT _refine.ls_number_reflns_obs 9955 _refine.ls_number_reflns_all 9955 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.07 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.262 _refine.ls_R_factor_all 0.262 _refine.ls_R_factor_R_work 0.262 _refine.ls_R_factor_R_free 0.290 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 426 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.2 _refine.aniso_B[1][1] -1.50 _refine.aniso_B[2][2] -1.50 _refine.aniso_B[3][3] 3.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3LDT _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.35 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1157 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1245 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 40.07 # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.294 _refine_ls_shell.percent_reflns_obs 99.3 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1533 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LDT _struct.title 'Crystal structure of an Outer membrane protein(OmpA)from Legionella pneumophila' _struct.pdbx_descriptor 'Outer membrane protein, OmpA family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LDT _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;OmpA-like domain, PSI-II, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 20 ? GLN A 37 ? ALA A 95 GLN A 112 1 ? 18 HELX_P HELX_P2 2 SER A 62 ? TYR A 70 ? SER A 137 TYR A 145 1 ? 9 HELX_P HELX_P3 3 TYR A 70 ? ASN A 81 ? TYR A 145 ASN A 156 1 ? 12 HELX_P HELX_P4 4 LYS A 103 ? ASN A 121 ? LYS A 178 ASN A 196 1 ? 19 HELX_P HELX_P5 5 HIS A 146 ? ASN A 151 ? HIS A 221 ASN A 226 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 58 C ? ? ? 1_555 A MSE 59 N ? ? A PHE 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A THR 113 C ? ? ? 1_555 A MSE 114 N ? ? A THR 188 A MSE 189 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A MSE 114 C ? ? ? 1_555 A MSE 115 N ? ? A MSE 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 115 C ? ? ? 1_555 A THR 116 N ? ? A MSE 190 A THR 191 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 40 ? TYR A 44 ? GLN A 115 TYR A 119 A 2 THR A 47 ? PRO A 53 ? THR A 122 PRO A 128 A 3 ARG A 153 ? PHE A 159 ? ARG A 228 PHE A 234 A 4 ILE A 88 ? PHE A 93 ? ILE A 163 PHE A 168 A 5 LEU A 128 ? ALA A 130 ? LEU A 203 ALA A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 42 ? N VAL A 117 O THR A 49 ? O THR A 124 A 2 3 N ILE A 52 ? N ILE A 127 O ILE A 154 ? O ILE A 229 A 3 4 O GLN A 157 ? O GLN A 232 N TYR A 89 ? N TYR A 164 A 4 5 N ILE A 88 ? N ILE A 163 O LYS A 129 ? O LYS A 204 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 501 ? 6 'BINDING SITE FOR RESIDUE GOL A 501' AC2 Software A GOL 502 ? 3 'BINDING SITE FOR RESIDUE GOL A 502' AC3 Software A GOL 503 ? 5 'BINDING SITE FOR RESIDUE GOL A 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 99 ? SER A 174 . ? 1_555 ? 2 AC1 6 ARG A 100 ? ARG A 175 . ? 1_555 ? 3 AC1 6 TRP A 119 ? TRP A 194 . ? 3_645 ? 4 AC1 6 ALA A 124 ? ALA A 199 . ? 3_645 ? 5 AC1 6 ALA A 125 ? ALA A 200 . ? 3_645 ? 6 AC1 6 LYS A 126 ? LYS A 201 . ? 3_645 ? 7 AC2 3 GLU A 112 ? GLU A 187 . ? 1_555 ? 8 AC2 3 THR A 116 ? THR A 191 . ? 7_545 ? 9 AC2 3 TRP A 119 ? TRP A 194 . ? 7_545 ? 10 AC3 5 PHE A 58 ? PHE A 133 . ? 7_545 ? 11 AC3 5 SER A 62 ? SER A 137 . ? 1_555 ? 12 AC3 5 ARG A 64 ? ARG A 139 . ? 1_555 ? 13 AC3 5 THR A 94 ? THR A 169 . ? 7_545 ? 14 AC3 5 LEU A 106 ? LEU A 181 . ? 7_545 ? # _database_PDB_matrix.entry_id 3LDT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LDT _atom_sites.fract_transf_matrix[1][1] 0.012810 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012810 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007141 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 76 ? ? ? A . n A 1 2 SER 2 77 ? ? ? A . n A 1 3 LEU 3 78 ? ? ? A . n A 1 4 SER 4 79 ? ? ? A . n A 1 5 GLY 5 80 ? ? ? A . n A 1 6 THR 6 81 ? ? ? A . n A 1 7 LEU 7 82 ? ? ? A . n A 1 8 ILE 8 83 ? ? ? A . n A 1 9 GLY 9 84 ? ? ? A . n A 1 10 ALA 10 85 ? ? ? A . n A 1 11 ALA 11 86 ? ? ? A . n A 1 12 ALA 12 87 ? ? ? A . n A 1 13 GLY 13 88 ? ? ? A . n A 1 14 GLY 14 89 ? ? ? A . n A 1 15 THR 15 90 ? ? ? A . n A 1 16 VAL 16 91 ? ? ? A . n A 1 17 GLY 17 92 92 GLY GLY A . n A 1 18 LEU 18 93 93 LEU LEU A . n A 1 19 VAL 19 94 94 VAL VAL A . n A 1 20 ALA 20 95 95 ALA ALA A . n A 1 21 SER 21 96 96 SER SER A . n A 1 22 ILE 22 97 97 ILE ILE A . n A 1 23 TYR 23 98 98 TYR TYR A . n A 1 24 ARG 24 99 99 ARG ARG A . n A 1 25 ASP 25 100 100 ASP ASP A . n A 1 26 SER 26 101 101 SER SER A . n A 1 27 LYS 27 102 102 LYS LYS A . n A 1 28 ARG 28 103 103 ARG ARG A . n A 1 29 LYS 29 104 104 LYS LYS A . n A 1 30 ILE 30 105 105 ILE ILE A . n A 1 31 ILE 31 106 106 ILE ILE A . n A 1 32 ARG 32 107 107 ARG ARG A . n A 1 33 ASP 33 108 108 ASP ASP A . n A 1 34 LEU 34 109 109 LEU LEU A . n A 1 35 GLN 35 110 110 GLN GLN A . n A 1 36 LYS 36 111 111 LYS LYS A . n A 1 37 GLN 37 112 112 GLN GLN A . n A 1 38 ASP 38 113 113 ASP ASP A . n A 1 39 ILE 39 114 114 ILE ILE A . n A 1 40 GLN 40 115 115 GLN GLN A . n A 1 41 TYR 41 116 116 TYR TYR A . n A 1 42 VAL 42 117 117 VAL VAL A . n A 1 43 GLU 43 118 118 GLU GLU A . n A 1 44 TYR 44 119 119 TYR TYR A . n A 1 45 GLY 45 120 120 GLY GLY A . n A 1 46 ASP 46 121 121 ASP ASP A . n A 1 47 THR 47 122 122 THR THR A . n A 1 48 ARG 48 123 123 ARG ARG A . n A 1 49 THR 49 124 124 THR THR A . n A 1 50 LEU 50 125 125 LEU LEU A . n A 1 51 ILE 51 126 126 ILE ILE A . n A 1 52 ILE 52 127 127 ILE ILE A . n A 1 53 PRO 53 128 128 PRO PRO A . n A 1 54 THR 54 129 129 THR THR A . n A 1 55 ASP 55 130 130 ASP ASP A . n A 1 56 LYS 56 131 131 LYS LYS A . n A 1 57 TYR 57 132 132 TYR TYR A . n A 1 58 PHE 58 133 133 PHE PHE A . n A 1 59 MSE 59 134 134 MSE MSE A . n A 1 60 PHE 60 135 ? ? ? A . n A 1 61 SER 61 136 136 SER SER A . n A 1 62 SER 62 137 137 SER SER A . n A 1 63 PRO 63 138 138 PRO PRO A . n A 1 64 ARG 64 139 139 ARG ARG A . n A 1 65 LEU 65 140 140 LEU LEU A . n A 1 66 ASN 66 141 141 ASN ASN A . n A 1 67 GLU 67 142 142 GLU GLU A . n A 1 68 ILE 68 143 143 ILE ILE A . n A 1 69 CYS 69 144 144 CYS CYS A . n A 1 70 TYR 70 145 145 TYR TYR A . n A 1 71 PRO 71 146 146 PRO PRO A . n A 1 72 GLY 72 147 147 GLY GLY A . n A 1 73 LEU 73 148 148 LEU LEU A . n A 1 74 ASN 74 149 149 ASN ASN A . n A 1 75 ASN 75 150 150 ASN ASN A . n A 1 76 VAL 76 151 151 VAL VAL A . n A 1 77 ILE 77 152 152 ILE ILE A . n A 1 78 ARG 78 153 153 ARG ARG A . n A 1 79 LEU 79 154 154 LEU LEU A . n A 1 80 LEU 80 155 155 LEU LEU A . n A 1 81 ASN 81 156 156 ASN ASN A . n A 1 82 PHE 82 157 157 PHE PHE A . n A 1 83 TYR 83 158 158 TYR TYR A . n A 1 84 PRO 84 159 159 PRO PRO A . n A 1 85 GLN 85 160 160 GLN GLN A . n A 1 86 SER 86 161 161 SER SER A . n A 1 87 THR 87 162 162 THR THR A . n A 1 88 ILE 88 163 163 ILE ILE A . n A 1 89 TYR 89 164 164 TYR TYR A . n A 1 90 VAL 90 165 165 VAL VAL A . n A 1 91 ALA 91 166 166 ALA ALA A . n A 1 92 GLY 92 167 167 GLY GLY A . n A 1 93 PHE 93 168 168 PHE PHE A . n A 1 94 THR 94 169 169 THR THR A . n A 1 95 ASP 95 170 170 ASP ASP A . n A 1 96 ASN 96 171 171 ASN ASN A . n A 1 97 VAL 97 172 172 VAL VAL A . n A 1 98 GLY 98 173 173 GLY GLY A . n A 1 99 SER 99 174 174 SER SER A . n A 1 100 ARG 100 175 175 ARG ARG A . n A 1 101 SER 101 176 ? ? ? A . n A 1 102 HIS 102 177 ? ? ? A . n A 1 103 LYS 103 178 178 LYS LYS A . n A 1 104 ARG 104 179 179 ARG ARG A . n A 1 105 LYS 105 180 180 LYS LYS A . n A 1 106 LEU 106 181 181 LEU LEU A . n A 1 107 SER 107 182 182 SER SER A . n A 1 108 GLN 108 183 183 GLN GLN A . n A 1 109 ALA 109 184 184 ALA ALA A . n A 1 110 GLN 110 185 185 GLN GLN A . n A 1 111 ALA 111 186 186 ALA ALA A . n A 1 112 GLU 112 187 187 GLU GLU A . n A 1 113 THR 113 188 188 THR THR A . n A 1 114 MSE 114 189 189 MSE MSE A . n A 1 115 MSE 115 190 190 MSE MSE A . n A 1 116 THR 116 191 191 THR THR A . n A 1 117 PHE 117 192 192 PHE PHE A . n A 1 118 LEU 118 193 193 LEU LEU A . n A 1 119 TRP 119 194 194 TRP TRP A . n A 1 120 ALA 120 195 195 ALA ALA A . n A 1 121 ASN 121 196 196 ASN ASN A . n A 1 122 GLY 122 197 197 GLY GLY A . n A 1 123 ILE 123 198 198 ILE ILE A . n A 1 124 ALA 124 199 199 ALA ALA A . n A 1 125 ALA 125 200 200 ALA ALA A . n A 1 126 LYS 126 201 201 LYS LYS A . n A 1 127 ARG 127 202 202 ARG ARG A . n A 1 128 LEU 128 203 203 LEU LEU A . n A 1 129 LYS 129 204 204 LYS LYS A . n A 1 130 ALA 130 205 205 ALA ALA A . n A 1 131 GLU 131 206 206 GLU GLU A . n A 1 132 GLY 132 207 207 GLY GLY A . n A 1 133 TYR 133 208 208 TYR TYR A . n A 1 134 GLY 134 209 209 GLY GLY A . n A 1 135 ASP 135 210 210 ASP ASP A . n A 1 136 LYS 136 211 211 LYS LYS A . n A 1 137 ASN 137 212 212 ASN ASN A . n A 1 138 ALA 138 213 213 ALA ALA A . n A 1 139 ILE 139 214 214 ILE ILE A . n A 1 140 SER 140 215 215 SER SER A . n A 1 141 ASP 141 216 216 ASP ASP A . n A 1 142 ASN 142 217 217 ASN ASN A . n A 1 143 ALA 143 218 218 ALA ALA A . n A 1 144 ILE 144 219 219 ILE ILE A . n A 1 145 ILE 145 220 220 ILE ILE A . n A 1 146 HIS 146 221 221 HIS HIS A . n A 1 147 GLY 147 222 222 GLY GLY A . n A 1 148 SER 148 223 223 SER SER A . n A 1 149 ALA 149 224 224 ALA ALA A . n A 1 150 GLN 150 225 225 GLN GLN A . n A 1 151 ASN 151 226 226 ASN ASN A . n A 1 152 ARG 152 227 227 ARG ARG A . n A 1 153 ARG 153 228 228 ARG ARG A . n A 1 154 ILE 154 229 229 ILE ILE A . n A 1 155 GLU 155 230 230 GLU GLU A . n A 1 156 ILE 156 231 231 ILE ILE A . n A 1 157 GLN 157 232 232 GLN GLN A . n A 1 158 TRP 158 233 233 TRP TRP A . n A 1 159 PHE 159 234 234 PHE PHE A . n A 1 160 THR 160 235 235 THR THR A . n A 1 161 SER 161 236 236 SER SER A . n A 1 162 GLU 162 237 237 GLU GLU A . n A 1 163 GLY 163 238 238 GLY GLY A . n A 1 164 HIS 164 239 ? ? ? A . n A 1 165 HIS 165 240 ? ? ? A . n A 1 166 HIS 166 241 ? ? ? A . n A 1 167 HIS 167 242 ? ? ? A . n A 1 168 HIS 168 243 ? ? ? A . n A 1 169 HIS 169 244 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 501 501 GOL GOL A . C 2 GOL 1 502 502 GOL GOL A . D 2 GOL 1 503 503 GOL GOL A . E 3 HOH 1 2 2 HOH TIP A . E 3 HOH 2 4 4 HOH TIP A . E 3 HOH 3 6 6 HOH TIP A . E 3 HOH 4 9 9 HOH TIP A . E 3 HOH 5 10 10 HOH TIP A . E 3 HOH 6 11 11 HOH TIP A . E 3 HOH 7 13 13 HOH TIP A . E 3 HOH 8 14 14 HOH TIP A . E 3 HOH 9 16 16 HOH TIP A . E 3 HOH 10 17 17 HOH TIP A . E 3 HOH 11 18 18 HOH TIP A . E 3 HOH 12 20 20 HOH TIP A . E 3 HOH 13 21 21 HOH TIP A . E 3 HOH 14 24 24 HOH TIP A . E 3 HOH 15 25 25 HOH TIP A . E 3 HOH 16 27 27 HOH TIP A . E 3 HOH 17 28 28 HOH TIP A . E 3 HOH 18 31 31 HOH TIP A . E 3 HOH 19 33 33 HOH TIP A . E 3 HOH 20 34 34 HOH TIP A . E 3 HOH 21 38 38 HOH TIP A . E 3 HOH 22 39 39 HOH TIP A . E 3 HOH 23 40 40 HOH TIP A . E 3 HOH 24 41 41 HOH TIP A . E 3 HOH 25 42 42 HOH TIP A . E 3 HOH 26 43 43 HOH TIP A . E 3 HOH 27 44 44 HOH TIP A . E 3 HOH 28 45 45 HOH TIP A . E 3 HOH 29 46 46 HOH TIP A . E 3 HOH 30 47 47 HOH TIP A . E 3 HOH 31 49 49 HOH TIP A . E 3 HOH 32 51 51 HOH TIP A . E 3 HOH 33 52 52 HOH TIP A . E 3 HOH 34 53 53 HOH TIP A . E 3 HOH 35 54 54 HOH TIP A . E 3 HOH 36 56 56 HOH TIP A . E 3 HOH 37 59 59 HOH TIP A . E 3 HOH 38 60 60 HOH TIP A . E 3 HOH 39 62 62 HOH TIP A . E 3 HOH 40 63 63 HOH TIP A . E 3 HOH 41 64 64 HOH TIP A . E 3 HOH 42 65 65 HOH TIP A . E 3 HOH 43 67 67 HOH TIP A . E 3 HOH 44 69 69 HOH TIP A . E 3 HOH 45 71 71 HOH TIP A . E 3 HOH 46 73 73 HOH TIP A . E 3 HOH 47 74 74 HOH TIP A . E 3 HOH 48 245 76 HOH TIP A . E 3 HOH 49 246 80 HOH TIP A . E 3 HOH 50 247 82 HOH TIP A . E 3 HOH 51 248 83 HOH TIP A . E 3 HOH 52 249 84 HOH TIP A . E 3 HOH 53 250 88 HOH TIP A . E 3 HOH 54 251 89 HOH TIP A . E 3 HOH 55 252 90 HOH TIP A . E 3 HOH 56 253 91 HOH TIP A . E 3 HOH 57 254 92 HOH TIP A . E 3 HOH 58 255 93 HOH TIP A . E 3 HOH 59 256 94 HOH TIP A . E 3 HOH 60 257 97 HOH TIP A . E 3 HOH 61 258 98 HOH TIP A . E 3 HOH 62 259 101 HOH TIP A . E 3 HOH 63 260 102 HOH TIP A . E 3 HOH 64 261 103 HOH TIP A . E 3 HOH 65 262 104 HOH TIP A . E 3 HOH 66 263 106 HOH TIP A . E 3 HOH 67 264 107 HOH TIP A . E 3 HOH 68 265 108 HOH TIP A . E 3 HOH 69 266 109 HOH TIP A . E 3 HOH 70 267 110 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 59 A MSE 134 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 189 ? MET SELENOMETHIONINE 3 A MSE 115 A MSE 190 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3350 ? 1 MORE -18 ? 1 'SSA (A^2)' 14640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0.0000000000 1.0000000000 0.0000000000 39.0310000000 1.0000000000 0.0000000000 0.0000000000 -39.0310000000 0.0000000000 0.0000000000 -1.0000000000 70.0220000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 264 ? E HOH . 2 1 A HOH 267 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SHELXCD phasing . ? 2 SHARP phasing . ? 3 CNS refinement 1.1 ? 4 DENZO 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 173 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 173 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 173 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 149.21 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation 36.11 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 93 ? ? 106.06 -60.23 2 1 PHE A 168 ? ? -153.46 86.07 3 1 ASP A 170 ? ? -58.66 23.64 4 1 SER A 174 ? ? 101.23 -117.56 5 1 ASN A 226 ? ? -97.41 -61.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 76 ? A MSE 1 2 1 Y 1 A SER 77 ? A SER 2 3 1 Y 1 A LEU 78 ? A LEU 3 4 1 Y 1 A SER 79 ? A SER 4 5 1 Y 1 A GLY 80 ? A GLY 5 6 1 Y 1 A THR 81 ? A THR 6 7 1 Y 1 A LEU 82 ? A LEU 7 8 1 Y 1 A ILE 83 ? A ILE 8 9 1 Y 1 A GLY 84 ? A GLY 9 10 1 Y 1 A ALA 85 ? A ALA 10 11 1 Y 1 A ALA 86 ? A ALA 11 12 1 Y 1 A ALA 87 ? A ALA 12 13 1 Y 1 A GLY 88 ? A GLY 13 14 1 Y 1 A GLY 89 ? A GLY 14 15 1 Y 1 A THR 90 ? A THR 15 16 1 Y 1 A VAL 91 ? A VAL 16 17 1 Y 1 A PHE 135 ? A PHE 60 18 1 Y 1 A SER 176 ? A SER 101 19 1 Y 1 A HIS 177 ? A HIS 102 20 1 Y 1 A HIS 239 ? A HIS 164 21 1 Y 1 A HIS 240 ? A HIS 165 22 1 Y 1 A HIS 241 ? A HIS 166 23 1 Y 1 A HIS 242 ? A HIS 167 24 1 Y 1 A HIS 243 ? A HIS 168 25 1 Y 1 A HIS 244 ? A HIS 169 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #