HEADER HYDROLASE ACTIVATOR 26-JAN-10 3LJU TITLE CRYSTAL STRUCTURE OF FULL LENGTH CENTAURIN ALPHA-1 BOUND WITH THE HEAD TITLE 2 GROUP OF PIP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CENTAURIN-ALPHA-1, CNT-A1, PUTATIVE MAPK-ACTIVATING PROTEIN COMPND 5 PM25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAP1, CENTA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL (GI:134105571) KEYWDS STRUCTURAL GENOMICS CONSORTIUM, GAP, GTPASE ACTIVATION, SGC, METAL- KEYWDS 2 BINDING, NUCLEUS, PHOSPHOPROTEIN, ZINC-FINGER, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR L.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3LJU 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK REVDAT 3 01-NOV-17 3LJU 1 REMARK REVDAT 2 15-DEC-10 3LJU 1 JRNL REVDAT 1 24-NOV-10 3LJU 0 JRNL AUTH Y.TONG,W.TEMPEL,H.WANG,K.YAMADA,L.SHEN,G.A.SENISTERRA, JRNL AUTH 2 F.MACKENZIE,A.H.CHISHTI,H.W.PARK JRNL TITL PHOSPHORYLATION-INDEPENDENT DUAL-SITE BINDING OF THE FHA JRNL TITL 2 DOMAIN OF KIF13 MEDIATES PHOSPHOINOSITIDE TRANSPORT VIA JRNL TITL 3 CENTAURIN ALPHA1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20346 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21057110 JRNL DOI 10.1073/PNAS.1009008107 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 48202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.056 REMARK 3 FREE R VALUE TEST SET COUNT : 2437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76700 REMARK 3 B22 (A**2) : 0.17600 REMARK 3 B33 (A**2) : 0.59100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.029 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3215 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2284 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4366 ; 1.474 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5453 ; 0.862 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;28.748 ;22.289 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;12.401 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;12.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3566 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 2.414 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 753 ; 0.816 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3009 ; 3.537 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 3.058 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1352 ; 4.585 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY. THE PROGRAMS COOT AND REMARK 3 PRODRG AND MOLPROBITY SERVERS WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 3LJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FEH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM CHLORIDE. REMARK 280 PROTEIN BUFFER: 0.02M HEPES PH 7.3, 0.3M SODIUM CHLORIDE, 0.001M REMARK 280 TCEP, 5% GLYCCEROL, 2.0MG/ML L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL REMARK 280 3,4,5-TRIPHOSPHATE, DIOCTANOYL, FROM SIGMA, CATALOG NO. P9953, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.86350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.60950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.20700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.60950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.86350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.20700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -15 REMARK 465 HIS X -14 REMARK 465 HIS X -13 REMARK 465 HIS X -12 REMARK 465 HIS X -11 REMARK 465 HIS X -10 REMARK 465 HIS X -9 REMARK 465 SER X -8 REMARK 465 ARG X 165 REMARK 465 ASN X 166 REMARK 465 ASP X 167 REMARK 465 ALA X 168 REMARK 465 LYS X 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER X -7 OG REMARK 470 GLU X 122 CD OE1 OE2 REMARK 470 GLN X 145 CD OE1 NE2 REMARK 470 GLU X 170 CG CD OE1 OE2 REMARK 470 LYS X 201 CE NZ REMARK 470 ASP X 202 CG OD1 OD2 REMARK 470 ASP X 242 CG OD1 OD2 REMARK 470 LYS X 286 CD CE NZ REMARK 470 SER X 315 OG REMARK 470 GLN X 317 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 76 -119.18 -109.55 REMARK 500 ARG X 84 -66.61 -94.53 REMARK 500 ASP X 279 -104.36 71.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IP9 X 371 REMARK 610 IP9 X 372 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 21 SG REMARK 620 2 CYS X 24 SG 109.0 REMARK 620 3 CYS X 41 SG 117.2 107.7 REMARK 620 4 CYS X 44 SG 106.1 112.9 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IP9 X 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IP9 X 372 DBREF 3LJU X 3 370 UNP O75689 ADAP1_HUMAN 3 370 SEQADV 3LJU MET X -15 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -14 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -13 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -12 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -11 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -10 UNP O75689 EXPRESSION TAG SEQADV 3LJU HIS X -9 UNP O75689 EXPRESSION TAG SEQADV 3LJU SER X -8 UNP O75689 EXPRESSION TAG SEQADV 3LJU SER X -7 UNP O75689 EXPRESSION TAG SEQADV 3LJU GLY X -6 UNP O75689 EXPRESSION TAG SEQADV 3LJU ARG X -5 UNP O75689 EXPRESSION TAG SEQADV 3LJU GLU X -4 UNP O75689 EXPRESSION TAG SEQADV 3LJU ASN X -3 UNP O75689 EXPRESSION TAG SEQADV 3LJU LEU X -2 UNP O75689 EXPRESSION TAG SEQADV 3LJU TYR X -1 UNP O75689 EXPRESSION TAG SEQADV 3LJU PHE X 0 UNP O75689 EXPRESSION TAG SEQADV 3LJU GLN X 1 UNP O75689 EXPRESSION TAG SEQADV 3LJU GLY X 2 UNP O75689 EXPRESSION TAG SEQADV 3LJU SER X 241 UNP O75689 GLY 241 CONFLICT SEQRES 1 X 386 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 X 386 LEU TYR PHE GLN GLY LYS GLU ARG ARG ARG ALA VAL LEU SEQRES 3 X 386 GLU LEU LEU GLN ARG PRO GLY ASN ALA ARG CYS ALA ASP SEQRES 4 X 386 CYS GLY ALA PRO ASP PRO ASP TRP ALA SER TYR THR LEU SEQRES 5 X 386 GLY VAL PHE ILE CYS LEU SER CYS SER GLY ILE HIS ARG SEQRES 6 X 386 ASN ILE PRO GLN VAL SER LYS VAL LYS SER VAL ARG LEU SEQRES 7 X 386 ASP ALA TRP GLU GLU ALA GLN VAL GLU PHE MET ALA SER SEQRES 8 X 386 HIS GLY ASN ASP ALA ALA ARG ALA ARG PHE GLU SER LYS SEQRES 9 X 386 VAL PRO SER PHE TYR TYR ARG PRO THR PRO SER ASP CYS SEQRES 10 X 386 GLN LEU LEU ARG GLU GLN TRP ILE ARG ALA LYS TYR GLU SEQRES 11 X 386 ARG GLN GLU PHE ILE TYR PRO GLU LYS GLN GLU PRO TYR SEQRES 12 X 386 SER ALA GLY TYR ARG GLU GLY PHE LEU TRP LYS ARG GLY SEQRES 13 X 386 ARG ASP ASN GLY GLN PHE LEU SER ARG LYS PHE VAL LEU SEQRES 14 X 386 THR GLU ARG GLU GLY ALA LEU LYS TYR PHE ASN ARG ASN SEQRES 15 X 386 ASP ALA LYS GLU PRO LYS ALA VAL MET LYS ILE GLU HIS SEQRES 16 X 386 LEU ASN ALA THR PHE GLN PRO ALA LYS ILE GLY HIS PRO SEQRES 17 X 386 HIS GLY LEU GLN VAL THR TYR LEU LYS ASP ASN SER THR SEQRES 18 X 386 ARG ASN ILE PHE ILE TYR HIS GLU ASP GLY LYS GLU ILE SEQRES 19 X 386 VAL ASP TRP PHE ASN ALA LEU ARG ALA ALA ARG PHE HIS SEQRES 20 X 386 TYR LEU GLN VAL ALA PHE PRO GLY ALA SER ASP ALA ASP SEQRES 21 X 386 LEU VAL PRO LYS LEU SER ARG ASN TYR LEU LYS GLU GLY SEQRES 22 X 386 TYR MET GLU LYS THR GLY PRO LYS GLN THR GLU GLY PHE SEQRES 23 X 386 ARG LYS ARG TRP PHE THR MET ASP ASP ARG ARG LEU MET SEQRES 24 X 386 TYR PHE LYS ASP PRO LEU ASP ALA PHE ALA ARG GLY GLU SEQRES 25 X 386 VAL PHE ILE GLY SER LYS GLU SER GLY TYR THR VAL LEU SEQRES 26 X 386 HIS GLY PHE PRO PRO SER THR GLN GLY HIS HIS TRP PRO SEQRES 27 X 386 HIS GLY ILE THR ILE VAL THR PRO ASP ARG LYS PHE LEU SEQRES 28 X 386 PHE ALA CYS GLU THR GLU SER ASP GLN ARG GLU TRP VAL SEQRES 29 X 386 ALA ALA PHE GLN LYS ALA VAL ASP ARG PRO MET LEU PRO SEQRES 30 X 386 GLN GLU TYR ALA VAL GLU ALA HIS PHE HET ZN X 401 1 HET IP9 X 371 28 HET IP9 X 372 24 HETNAM ZN ZINC ION HETNAM IP9 (2R)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-DIHYDROXY-3,4,5- HETNAM 2 IP9 TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY) HETNAM 3 IP9 PHOSPHORYL]OXY}PROPANE -1,2-DIYL DIOCTANOATE HETSYN IP9 L-A-PHOSPHATIDYL-D-MYO-INOSITOL 3,4,5-TRIPHOSPHATE, HETSYN 2 IP9 DIOCTANOYL; [(2R)-3-[[(2S,3S,5R,6S)-2,6-DIHYDROXY-3,4, HETSYN 3 IP9 5-TRIPHOSPHONOOXY-CYCLOHEXYL]OXY-HYDROXY- HETSYN 4 IP9 PHOSPHORYL]OXY-2-OCTANOYLOXY-PROPYL] OCTANOATE FORMUL 2 ZN ZN 2+ FORMUL 3 IP9 2(C25 H50 O22 P4) FORMUL 5 HOH *294(H2 O) HELIX 1 1 SER X -7 GLU X -4 5 4 HELIX 2 2 ASN X -3 LEU X 13 1 17 HELIX 3 3 GLN X 14 ALA X 19 5 6 HELIX 4 4 CYS X 41 ASN X 50 1 10 HELIX 5 5 GLU X 66 HIS X 76 1 11 HELIX 6 6 GLY X 77 GLU X 86 1 10 HELIX 7 7 CYS X 101 GLU X 114 1 14 HELIX 8 8 TYR X 120 LYS X 123 5 4 HELIX 9 9 GLN X 124 ALA X 129 1 6 HELIX 10 10 GLN X 185 GLY X 190 1 6 HELIX 11 11 ASP X 214 PHE X 237 1 24 HELIX 12 12 SER X 241 VAL X 246 1 6 HELIX 13 13 PRO X 247 LEU X 249 5 3 HELIX 14 14 SER X 301 GLY X 305 5 5 HELIX 15 15 THR X 340 ARG X 357 1 18 HELIX 16 16 GLN X 362 PHE X 370 1 9 SHEET 1 A 3 VAL X 38 ILE X 40 0 SHEET 2 A 3 TRP X 31 SER X 33 -1 N SER X 33 O VAL X 38 SHEET 3 A 3 VAL X 57 SER X 59 -1 O LYS X 58 N ALA X 32 SHEET 1 B 7 ALA X 173 LYS X 176 0 SHEET 2 B 7 ALA X 159 PHE X 163 -1 N LEU X 160 O MET X 175 SHEET 3 B 7 PHE X 146 THR X 154 -1 N VAL X 152 O LYS X 161 SHEET 4 B 7 TYR X 131 ARG X 139 -1 N ARG X 132 O LEU X 153 SHEET 5 B 7 SER X 204 TYR X 211 -1 O PHE X 209 N ARG X 139 SHEET 6 B 7 LEU X 195 LYS X 201 -1 N VAL X 197 O ILE X 208 SHEET 7 B 7 LEU X 180 PHE X 184 -1 N THR X 183 O GLN X 196 SHEET 1 C 7 GLY X 295 PHE X 298 0 SHEET 2 C 7 ARG X 281 PHE X 285 -1 N LEU X 282 O VAL X 297 SHEET 3 C 7 ARG X 271 ASP X 278 -1 N ASP X 278 O ARG X 281 SHEET 4 C 7 LYS X 255 LYS X 261 -1 N MET X 259 O ARG X 273 SHEET 5 C 7 LYS X 333 CYS X 338 -1 O ALA X 337 N GLU X 260 SHEET 6 C 7 HIS X 323 VAL X 328 -1 N ILE X 327 O PHE X 334 SHEET 7 C 7 THR X 307 HIS X 310 -1 N LEU X 309 O THR X 326 LINK SG CYS X 21 ZN ZN X 401 1555 1555 2.26 LINK SG CYS X 24 ZN ZN X 401 1555 1555 2.29 LINK SG CYS X 41 ZN ZN X 401 1555 1555 2.36 LINK SG CYS X 44 ZN ZN X 401 1555 1555 2.35 SITE 1 AC1 4 CYS X 21 CYS X 24 CYS X 41 CYS X 44 SITE 1 AC2 17 SER X 43 LYS X 261 THR X 262 GLY X 263 SITE 2 AC2 17 PRO X 264 GLU X 268 ARG X 271 ARG X 273 SITE 3 AC2 17 TYR X 284 ARG X 332 HOH X 463 HOH X 470 SITE 4 AC2 17 HOH X 498 HOH X 541 HOH X 573 HOH X 580 SITE 5 AC2 17 HOH X 603 SITE 1 AC3 18 LYS X 138 GLY X 140 ARG X 141 ARG X 149 SITE 2 AC3 18 TYR X 162 ASN X 164 LYS X 172 ARG X 206 SITE 3 AC3 18 THR X 340 GLU X 341 SER X 342 ARG X 345 SITE 4 AC3 18 HOH X 423 HOH X 442 HOH X 471 HOH X 506 SITE 5 AC3 18 HOH X 531 HOH X 637 CRYST1 51.727 66.414 127.219 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007860 0.00000