data_3LLC # _entry.id 3LLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LLC pdb_00003llc 10.2210/pdb3llc/pdb RCSB RCSB057418 ? ? WWPDB D_1000057418 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 401112 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3LLC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative hydrolase (YP_002548124.1) from Agrobacterium vitis S4 at 1.80 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3LLC _cell.length_a 112.652 _cell.length_b 112.652 _cell.length_c 59.497 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LLC _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative hydrolase' 29997.279 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 6 water nat water 18.015 252 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSD(MSE)TGTKALE(MSE)DDLAASLGVG AIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHFKPEKAILVGSS(MSE)GGWIALRLIQELKARHDNPTQVSG(MSE) VLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRAL(MSE)EDGRANRV(MSE)AG(MSE)IDTGCP VHILQG(MSE)ADPDVPYQHALKLVEHLPADDVVLTLVRDGDHRLSRPQDIDR(MSE)RNAIRA(MSE)IEPRP ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGAS GGAFRDGTISRWLEEALAVLDHFKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGD RERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDVVLT LVRDGDHRLSRPQDIDRMRNAIRAMIEPRP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 401112 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 ASN n 1 5 VAL n 1 6 GLY n 1 7 ARG n 1 8 PRO n 1 9 ILE n 1 10 GLU n 1 11 THR n 1 12 HIS n 1 13 ALA n 1 14 ILE n 1 15 THR n 1 16 VAL n 1 17 GLY n 1 18 GLN n 1 19 GLY n 1 20 SER n 1 21 ASP n 1 22 ALA n 1 23 ARG n 1 24 SER n 1 25 ILE n 1 26 ALA n 1 27 ALA n 1 28 LEU n 1 29 VAL n 1 30 ARG n 1 31 ALA n 1 32 PRO n 1 33 ALA n 1 34 GLN n 1 35 ASP n 1 36 GLU n 1 37 ARG n 1 38 PRO n 1 39 THR n 1 40 CYS n 1 41 ILE n 1 42 TRP n 1 43 LEU n 1 44 GLY n 1 45 GLY n 1 46 TYR n 1 47 ARG n 1 48 SER n 1 49 ASP n 1 50 MSE n 1 51 THR n 1 52 GLY n 1 53 THR n 1 54 LYS n 1 55 ALA n 1 56 LEU n 1 57 GLU n 1 58 MSE n 1 59 ASP n 1 60 ASP n 1 61 LEU n 1 62 ALA n 1 63 ALA n 1 64 SER n 1 65 LEU n 1 66 GLY n 1 67 VAL n 1 68 GLY n 1 69 ALA n 1 70 ILE n 1 71 ARG n 1 72 PHE n 1 73 ASP n 1 74 TYR n 1 75 SER n 1 76 GLY n 1 77 HIS n 1 78 GLY n 1 79 ALA n 1 80 SER n 1 81 GLY n 1 82 GLY n 1 83 ALA n 1 84 PHE n 1 85 ARG n 1 86 ASP n 1 87 GLY n 1 88 THR n 1 89 ILE n 1 90 SER n 1 91 ARG n 1 92 TRP n 1 93 LEU n 1 94 GLU n 1 95 GLU n 1 96 ALA n 1 97 LEU n 1 98 ALA n 1 99 VAL n 1 100 LEU n 1 101 ASP n 1 102 HIS n 1 103 PHE n 1 104 LYS n 1 105 PRO n 1 106 GLU n 1 107 LYS n 1 108 ALA n 1 109 ILE n 1 110 LEU n 1 111 VAL n 1 112 GLY n 1 113 SER n 1 114 SER n 1 115 MSE n 1 116 GLY n 1 117 GLY n 1 118 TRP n 1 119 ILE n 1 120 ALA n 1 121 LEU n 1 122 ARG n 1 123 LEU n 1 124 ILE n 1 125 GLN n 1 126 GLU n 1 127 LEU n 1 128 LYS n 1 129 ALA n 1 130 ARG n 1 131 HIS n 1 132 ASP n 1 133 ASN n 1 134 PRO n 1 135 THR n 1 136 GLN n 1 137 VAL n 1 138 SER n 1 139 GLY n 1 140 MSE n 1 141 VAL n 1 142 LEU n 1 143 ILE n 1 144 ALA n 1 145 PRO n 1 146 ALA n 1 147 PRO n 1 148 ASP n 1 149 PHE n 1 150 THR n 1 151 SER n 1 152 ASP n 1 153 LEU n 1 154 ILE n 1 155 GLU n 1 156 PRO n 1 157 LEU n 1 158 LEU n 1 159 GLY n 1 160 ASP n 1 161 ARG n 1 162 GLU n 1 163 ARG n 1 164 ALA n 1 165 GLU n 1 166 LEU n 1 167 ALA n 1 168 GLU n 1 169 ASN n 1 170 GLY n 1 171 TYR n 1 172 PHE n 1 173 GLU n 1 174 GLU n 1 175 VAL n 1 176 SER n 1 177 GLU n 1 178 TYR n 1 179 SER n 1 180 PRO n 1 181 GLU n 1 182 PRO n 1 183 ASN n 1 184 ILE n 1 185 PHE n 1 186 THR n 1 187 ARG n 1 188 ALA n 1 189 LEU n 1 190 MSE n 1 191 GLU n 1 192 ASP n 1 193 GLY n 1 194 ARG n 1 195 ALA n 1 196 ASN n 1 197 ARG n 1 198 VAL n 1 199 MSE n 1 200 ALA n 1 201 GLY n 1 202 MSE n 1 203 ILE n 1 204 ASP n 1 205 THR n 1 206 GLY n 1 207 CYS n 1 208 PRO n 1 209 VAL n 1 210 HIS n 1 211 ILE n 1 212 LEU n 1 213 GLN n 1 214 GLY n 1 215 MSE n 1 216 ALA n 1 217 ASP n 1 218 PRO n 1 219 ASP n 1 220 VAL n 1 221 PRO n 1 222 TYR n 1 223 GLN n 1 224 HIS n 1 225 ALA n 1 226 LEU n 1 227 LYS n 1 228 LEU n 1 229 VAL n 1 230 GLU n 1 231 HIS n 1 232 LEU n 1 233 PRO n 1 234 ALA n 1 235 ASP n 1 236 ASP n 1 237 VAL n 1 238 VAL n 1 239 LEU n 1 240 THR n 1 241 LEU n 1 242 VAL n 1 243 ARG n 1 244 ASP n 1 245 GLY n 1 246 ASP n 1 247 HIS n 1 248 ARG n 1 249 LEU n 1 250 SER n 1 251 ARG n 1 252 PRO n 1 253 GLN n 1 254 ASP n 1 255 ILE n 1 256 ASP n 1 257 ARG n 1 258 MSE n 1 259 ARG n 1 260 ASN n 1 261 ALA n 1 262 ILE n 1 263 ARG n 1 264 ALA n 1 265 MSE n 1 266 ILE n 1 267 GLU n 1 268 PRO n 1 269 ARG n 1 270 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Rhizobium vitis (strain S4)' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Avi_0199 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'S4 / ATCC BAA-846' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agrobacterium vitis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 311402 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B9JYM4_AGRVS _struct_ref.pdbx_db_accession B9JYM4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASG GAFRDGTISRWLEEALAVLDHFKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDR ERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDVVLTL VRDGDHRLSRPQDIDRMRNAIRAMIEPRP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LLC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 270 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B9JYM4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 269 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 269 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3LLC _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B9JYM4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3LLC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NaCl, 20.0000% PEG-3350, No Buffer pH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-11-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97949 1.0 3 0.97934 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97949,0.97934 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3LLC _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 28.763 _reflns.number_obs 35908 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 12.120 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 26.331 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 7.107 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.86 22220 ? 6124 0.706 2.0 ? ? ? ? ? 96.50 1 1 1.86 1.94 27169 ? 7263 0.486 2.9 ? ? ? ? ? 99.60 2 1 1.94 2.03 26246 ? 6907 0.346 3.9 ? ? ? ? ? 99.90 3 1 2.03 2.13 24234 ? 6359 0.226 5.9 ? ? ? ? ? 99.70 4 1 2.13 2.27 27092 ? 7081 0.161 8.0 ? ? ? ? ? 99.80 5 1 2.27 2.44 25023 ? 6554 0.116 10.7 ? ? ? ? ? 99.80 6 1 2.44 2.69 26463 ? 6909 0.087 13.8 ? ? ? ? ? 99.60 7 1 2.69 3.07 25080 ? 6585 0.065 17.9 ? ? ? ? ? 99.50 8 1 3.07 3.87 25665 ? 6823 0.044 25.0 ? ? ? ? ? 99.10 9 1 3.87 28.763 25626 ? 6786 0.032 30.7 ? ? ? ? ? 99.10 10 1 # _refine.entry_id 3LLC _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 28.763 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.540 _refine.ls_number_reflns_obs 35855 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.PEG3350 FRAGMENTS (PEG AND PG4) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION SOLUTION AND 1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT SOLUTION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.161 _refine.ls_R_factor_R_work 0.160 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.185 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1788 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.838 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.480 _refine.aniso_B[2][2] -1.480 _refine.aniso_B[3][3] 2.950 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.090 _refine.overall_SU_ML 0.065 _refine.overall_SU_B 4.795 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 90.04 _refine.B_iso_min 10.21 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1982 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 252 _refine_hist.number_atoms_total 2275 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 28.763 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2207 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1542 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3014 1.436 1.981 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3769 0.951 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 307 5.095 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 104 36.772 23.654 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 374 13.920 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 22 18.885 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 337 0.103 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2513 0.006 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 438 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1368 1.724 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 553 0.492 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2221 2.766 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 839 4.293 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 769 6.401 11.000 ? ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.270 _refine_ls_shell.number_reflns_R_work 2412 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2526 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LLC _struct.title 'Crystal structure of Putative hydrolase (YP_002548124.1) from Agrobacterium vitis S4 at 1.80 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Putative hydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3LLC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 18 ? ALA A 22 ? GLN A 17 ALA A 21 5 ? 5 HELX_P HELX_P2 2 GLY A 52 ? GLY A 66 ? GLY A 51 GLY A 65 1 ? 15 HELX_P HELX_P3 3 ALA A 83 ? GLY A 87 ? ALA A 82 GLY A 86 5 ? 5 HELX_P HELX_P4 4 THR A 88 ? LYS A 104 ? THR A 87 LYS A 103 1 ? 17 HELX_P HELX_P5 5 MSE A 115 ? ALA A 129 ? MSE A 114 ALA A 128 1 ? 15 HELX_P HELX_P6 6 ASP A 148 ? LEU A 153 ? ASP A 147 LEU A 152 1 ? 6 HELX_P HELX_P7 7 ILE A 154 ? LEU A 158 ? ILE A 153 LEU A 157 5 ? 5 HELX_P HELX_P8 8 GLY A 159 ? GLY A 170 ? GLY A 158 GLY A 169 1 ? 12 HELX_P HELX_P9 9 ARG A 187 ? ASN A 196 ? ARG A 186 ASN A 195 1 ? 10 HELX_P HELX_P10 10 PRO A 221 ? HIS A 231 ? PRO A 220 HIS A 230 1 ? 11 HELX_P HELX_P11 11 ARG A 251 ? GLU A 267 ? ARG A 250 GLU A 266 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 49 C ? ? ? 1_555 A MSE 50 N ? ? A ASP 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 50 C ? ? ? 1_555 A THR 51 N ? ? A MSE 49 A THR 50 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? A GLU 57 C ? ? ? 1_555 A MSE 58 N ? ? A GLU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 58 C ? ? ? 1_555 A ASP 59 N ? ? A MSE 57 A ASP 58 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A SER 114 C ? ? ? 1_555 A MSE 115 N ? ? A SER 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? A MSE 115 C ? ? ? 1_555 A GLY 116 N ? ? A MSE 114 A GLY 115 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A GLY 139 C ? ? ? 1_555 A MSE 140 N ? ? A GLY 138 A MSE 139 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale8 covale both ? A MSE 140 C ? ? ? 1_555 A VAL 141 N ? ? A MSE 139 A VAL 140 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale9 covale both ? A LEU 189 C ? ? ? 1_555 A MSE 190 N ? ? A LEU 188 A MSE 189 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A MSE 190 C ? ? ? 1_555 A GLU 191 N ? ? A MSE 189 A GLU 190 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? A VAL 198 C ? ? ? 1_555 A MSE 199 N ? ? A VAL 197 A MSE 198 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale12 covale both ? A MSE 199 C ? ? ? 1_555 A ALA 200 N ? ? A MSE 198 A ALA 199 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? A GLY 201 C ? ? ? 1_555 A MSE 202 N ? ? A GLY 200 A MSE 201 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale14 covale both ? A MSE 202 C ? ? ? 1_555 A ILE 203 N ? ? A MSE 201 A ILE 202 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? A GLY 214 C ? ? ? 1_555 A MSE 215 N ? ? A GLY 213 A MSE 214 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? A MSE 215 C ? ? ? 1_555 A ALA 216 N ? ? A MSE 214 A ALA 215 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? A ARG 257 C ? ? ? 1_555 A MSE 258 N ? ? A ARG 256 A MSE 257 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale18 covale both ? A MSE 258 C ? ? ? 1_555 A ARG 259 N ? ? A MSE 257 A ARG 258 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale19 covale both ? A ALA 264 C ? ? ? 1_555 A MSE 265 N ? ? A ALA 263 A MSE 264 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale20 covale both ? A MSE 265 C ? ? ? 1_555 A ILE 266 N ? ? A MSE 264 A ILE 265 1_555 ? ? ? ? ? ? ? 1.338 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 9 ? VAL A 16 ? ILE A 8 VAL A 15 A 2 ARG A 23 ? ARG A 30 ? ARG A 22 ARG A 29 A 3 GLY A 68 ? PHE A 72 ? GLY A 67 PHE A 71 A 4 THR A 39 ? LEU A 43 ? THR A 38 LEU A 42 A 5 LYS A 107 ? SER A 113 ? LYS A 106 SER A 112 A 6 GLN A 136 ? ILE A 143 ? GLN A 135 ILE A 142 A 7 VAL A 209 ? GLY A 214 ? VAL A 208 GLY A 213 A 8 VAL A 237 ? VAL A 242 ? VAL A 236 VAL A 241 B 1 TYR A 171 ? GLU A 174 ? TYR A 170 GLU A 173 B 2 ASN A 183 ? THR A 186 ? ASN A 182 THR A 185 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 14 ? N ILE A 13 O ILE A 25 ? O ILE A 24 A 2 3 N ARG A 30 ? N ARG A 29 O ALA A 69 ? O ALA A 68 A 3 4 O GLY A 68 ? O GLY A 67 N CYS A 40 ? N CYS A 39 A 4 5 N ILE A 41 ? N ILE A 40 O VAL A 111 ? O VAL A 110 A 5 6 N LEU A 110 ? N LEU A 109 O VAL A 141 ? O VAL A 140 A 6 7 N LEU A 142 ? N LEU A 141 O LEU A 212 ? O LEU A 211 A 7 8 N ILE A 211 ? N ILE A 210 O THR A 240 ? O THR A 239 B 1 2 N GLU A 174 ? N GLU A 173 O ASN A 183 ? O ASN A 182 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 270 ? 4 'BINDING SITE FOR RESIDUE CL A 270' AC2 Software A EDO 271 ? 7 'BINDING SITE FOR RESIDUE EDO A 271' AC3 Software A EDO 272 ? 7 'BINDING SITE FOR RESIDUE EDO A 272' AC4 Software A EDO 273 ? 6 'BINDING SITE FOR RESIDUE EDO A 273' AC5 Software A EDO 274 ? 3 'BINDING SITE FOR RESIDUE EDO A 274' AC6 Software A EDO 275 ? 1 'BINDING SITE FOR RESIDUE EDO A 275' AC7 Software A PEG 276 ? 3 'BINDING SITE FOR RESIDUE PEG A 276' AC8 Software A PG4 277 ? 5 'BINDING SITE FOR RESIDUE PG4 A 277' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 THR A 53 ? THR A 52 . ? 1_555 ? 2 AC1 4 LYS A 54 ? LYS A 53 . ? 1_555 ? 3 AC1 4 HOH J . ? HOH A 319 . ? 1_555 ? 4 AC1 4 HOH J . ? HOH A 392 . ? 1_555 ? 5 AC2 7 SER A 24 ? SER A 23 . ? 4_554 ? 6 AC2 7 GLN A 125 ? GLN A 124 . ? 1_555 ? 7 AC2 7 VAL A 198 ? VAL A 197 . ? 1_555 ? 8 AC2 7 GLY A 201 ? GLY A 200 . ? 1_555 ? 9 AC2 7 MSE A 202 ? MSE A 201 . ? 1_555 ? 10 AC2 7 EDO D . ? EDO A 272 . ? 1_555 ? 11 AC2 7 HOH J . ? HOH A 284 . ? 1_555 ? 12 AC3 7 ARG A 122 ? ARG A 121 . ? 1_555 ? 13 AC3 7 GLN A 125 ? GLN A 124 . ? 1_555 ? 14 AC3 7 ALA A 195 ? ALA A 194 . ? 1_555 ? 15 AC3 7 ARG A 197 ? ARG A 196 . ? 1_555 ? 16 AC3 7 EDO C . ? EDO A 271 . ? 1_555 ? 17 AC3 7 HOH J . ? HOH A 505 . ? 4_554 ? 18 AC3 7 HOH J . ? HOH A 511 . ? 1_555 ? 19 AC4 6 ILE A 124 ? ILE A 123 . ? 1_555 ? 20 AC4 6 LEU A 127 ? LEU A 126 . ? 1_555 ? 21 AC4 6 ASN A 133 ? ASN A 132 . ? 1_555 ? 22 AC4 6 GLN A 136 ? GLN A 135 . ? 1_555 ? 23 AC4 6 VAL A 137 ? VAL A 136 . ? 1_555 ? 24 AC4 6 HOH J . ? HOH A 434 . ? 1_555 ? 25 AC5 3 VAL A 29 ? VAL A 28 . ? 1_555 ? 26 AC5 3 THR A 39 ? THR A 38 . ? 1_555 ? 27 AC5 3 PRO A 105 ? PRO A 104 . ? 1_555 ? 28 AC6 1 GLU A 57 ? GLU A 56 . ? 1_555 ? 29 AC7 3 GLU A 10 ? GLU A 9 . ? 1_555 ? 30 AC7 3 THR A 11 ? THR A 10 . ? 1_555 ? 31 AC7 3 HOH J . ? HOH A 384 . ? 1_555 ? 32 AC8 5 TYR A 46 ? TYR A 45 . ? 1_555 ? 33 AC8 5 SER A 114 ? SER A 113 . ? 1_555 ? 34 AC8 5 MSE A 115 ? MSE A 114 . ? 1_555 ? 35 AC8 5 GLU A 174 ? GLU A 173 . ? 1_555 ? 36 AC8 5 ASP A 219 ? ASP A 218 . ? 1_555 ? # _atom_sites.entry_id 3LLC _atom_sites.fract_transf_matrix[1][1] 0.008877 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008877 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016808 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 THR 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 VAL 5 4 ? ? ? A . n A 1 6 GLY 6 5 ? ? ? A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 THR 15 14 14 THR THR A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 CYS 40 39 39 CYS CYS A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 TRP 42 41 41 TRP TRP A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 MSE 50 49 49 MSE MSE A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 MSE 58 57 57 MSE MSE A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 TYR 74 73 73 TYR TYR A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 HIS 77 76 76 HIS HIS A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 SER 80 79 79 SER SER A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 GLY 82 81 81 GLY GLY A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 ILE 89 88 88 ILE ILE A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 TRP 92 91 91 TRP TRP A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 HIS 102 101 101 HIS HIS A . n A 1 103 PHE 103 102 102 PHE PHE A . n A 1 104 LYS 104 103 103 LYS LYS A . n A 1 105 PRO 105 104 104 PRO PRO A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 MSE 115 114 114 MSE MSE A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 TRP 118 117 117 TRP TRP A . n A 1 119 ILE 119 118 118 ILE ILE A . n A 1 120 ALA 120 119 119 ALA ALA A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 ARG 122 121 121 ARG ARG A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 LYS 128 127 127 LYS LYS A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 HIS 131 130 130 HIS HIS A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 GLN 136 135 135 GLN GLN A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 MSE 140 139 139 MSE MSE A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 PRO 145 144 144 PRO PRO A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 PRO 147 146 146 PRO PRO A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 PHE 149 148 148 PHE PHE A . n A 1 150 THR 150 149 149 THR THR A . n A 1 151 SER 151 150 150 SER SER A . n A 1 152 ASP 152 151 151 ASP ASP A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 GLU 155 154 154 GLU GLU A . n A 1 156 PRO 156 155 155 PRO PRO A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 GLY 159 158 158 GLY GLY A . n A 1 160 ASP 160 159 159 ASP ASP A . n A 1 161 ARG 161 160 160 ARG ARG A . n A 1 162 GLU 162 161 161 GLU GLU A . n A 1 163 ARG 163 162 162 ARG ARG A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 ASN 169 168 168 ASN ASN A . n A 1 170 GLY 170 169 169 GLY GLY A . n A 1 171 TYR 171 170 170 TYR TYR A . n A 1 172 PHE 172 171 171 PHE PHE A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 VAL 175 174 174 VAL VAL A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 GLU 177 176 176 GLU GLU A . n A 1 178 TYR 178 177 177 TYR TYR A . n A 1 179 SER 179 178 178 SER SER A . n A 1 180 PRO 180 179 179 PRO PRO A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 PRO 182 181 181 PRO PRO A . n A 1 183 ASN 183 182 182 ASN ASN A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 PHE 185 184 184 PHE PHE A . n A 1 186 THR 186 185 185 THR THR A . n A 1 187 ARG 187 186 186 ARG ARG A . n A 1 188 ALA 188 187 187 ALA ALA A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 MSE 190 189 189 MSE MSE A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 ASP 192 191 191 ASP ASP A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 ARG 194 193 193 ARG ARG A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 ASN 196 195 195 ASN ASN A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 VAL 198 197 197 VAL VAL A . n A 1 199 MSE 199 198 198 MSE MSE A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 GLY 201 200 200 GLY GLY A . n A 1 202 MSE 202 201 201 MSE MSE A . n A 1 203 ILE 203 202 202 ILE ILE A . n A 1 204 ASP 204 203 203 ASP ASP A . n A 1 205 THR 205 204 204 THR THR A . n A 1 206 GLY 206 205 205 GLY GLY A . n A 1 207 CYS 207 206 206 CYS CYS A . n A 1 208 PRO 208 207 207 PRO PRO A . n A 1 209 VAL 209 208 208 VAL VAL A . n A 1 210 HIS 210 209 209 HIS HIS A . n A 1 211 ILE 211 210 210 ILE ILE A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 GLN 213 212 212 GLN GLN A . n A 1 214 GLY 214 213 213 GLY GLY A . n A 1 215 MSE 215 214 214 MSE MSE A . n A 1 216 ALA 216 215 215 ALA ALA A . n A 1 217 ASP 217 216 216 ASP ASP A . n A 1 218 PRO 218 217 217 PRO PRO A . n A 1 219 ASP 219 218 218 ASP ASP A . n A 1 220 VAL 220 219 219 VAL VAL A . n A 1 221 PRO 221 220 220 PRO PRO A . n A 1 222 TYR 222 221 221 TYR TYR A . n A 1 223 GLN 223 222 222 GLN GLN A . n A 1 224 HIS 224 223 223 HIS HIS A . n A 1 225 ALA 225 224 224 ALA ALA A . n A 1 226 LEU 226 225 225 LEU LEU A . n A 1 227 LYS 227 226 226 LYS LYS A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 VAL 229 228 228 VAL VAL A . n A 1 230 GLU 230 229 229 GLU GLU A . n A 1 231 HIS 231 230 230 HIS HIS A . n A 1 232 LEU 232 231 231 LEU LEU A . n A 1 233 PRO 233 232 232 PRO PRO A . n A 1 234 ALA 234 233 233 ALA ALA A . n A 1 235 ASP 235 234 234 ASP ASP A . n A 1 236 ASP 236 235 235 ASP ASP A . n A 1 237 VAL 237 236 236 VAL VAL A . n A 1 238 VAL 238 237 237 VAL VAL A . n A 1 239 LEU 239 238 238 LEU LEU A . n A 1 240 THR 240 239 239 THR THR A . n A 1 241 LEU 241 240 240 LEU LEU A . n A 1 242 VAL 242 241 241 VAL VAL A . n A 1 243 ARG 243 242 242 ARG ARG A . n A 1 244 ASP 244 243 243 ASP ASP A . n A 1 245 GLY 245 244 244 GLY GLY A . n A 1 246 ASP 246 245 245 ASP ASP A . n A 1 247 HIS 247 246 246 HIS HIS A . n A 1 248 ARG 248 247 247 ARG ARG A . n A 1 249 LEU 249 248 248 LEU LEU A . n A 1 250 SER 250 249 249 SER SER A . n A 1 251 ARG 251 250 250 ARG ARG A . n A 1 252 PRO 252 251 251 PRO PRO A . n A 1 253 GLN 253 252 252 GLN GLN A . n A 1 254 ASP 254 253 253 ASP ASP A . n A 1 255 ILE 255 254 254 ILE ILE A . n A 1 256 ASP 256 255 255 ASP ASP A . n A 1 257 ARG 257 256 256 ARG ARG A . n A 1 258 MSE 258 257 257 MSE MSE A . n A 1 259 ARG 259 258 258 ARG ARG A . n A 1 260 ASN 260 259 259 ASN ASN A . n A 1 261 ALA 261 260 260 ALA ALA A . n A 1 262 ILE 262 261 261 ILE ILE A . n A 1 263 ARG 263 262 262 ARG ARG A . n A 1 264 ALA 264 263 263 ALA ALA A . n A 1 265 MSE 265 264 264 MSE MSE A . n A 1 266 ILE 266 265 265 ILE ILE A . n A 1 267 GLU 267 266 266 GLU GLU A . n A 1 268 PRO 268 267 ? ? ? A . n A 1 269 ARG 269 268 ? ? ? A . n A 1 270 PRO 270 269 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 270 1 CL CL A . C 3 EDO 1 271 2 EDO EDO A . D 3 EDO 1 272 3 EDO EDO A . E 3 EDO 1 273 4 EDO EDO A . F 3 EDO 1 274 5 EDO EDO A . G 3 EDO 1 275 6 EDO EDO A . H 4 PEG 1 276 7 PEG PEG A . I 5 PG4 1 277 8 PG4 PG4 A . J 6 HOH 1 278 9 HOH HOH A . J 6 HOH 2 279 10 HOH HOH A . J 6 HOH 3 280 11 HOH HOH A . J 6 HOH 4 281 12 HOH HOH A . J 6 HOH 5 282 13 HOH HOH A . J 6 HOH 6 283 14 HOH HOH A . J 6 HOH 7 284 15 HOH HOH A . J 6 HOH 8 285 16 HOH HOH A . J 6 HOH 9 286 17 HOH HOH A . J 6 HOH 10 287 18 HOH HOH A . J 6 HOH 11 288 19 HOH HOH A . J 6 HOH 12 289 20 HOH HOH A . J 6 HOH 13 290 21 HOH HOH A . J 6 HOH 14 291 22 HOH HOH A . J 6 HOH 15 292 23 HOH HOH A . J 6 HOH 16 293 24 HOH HOH A . J 6 HOH 17 294 25 HOH HOH A . J 6 HOH 18 295 26 HOH HOH A . J 6 HOH 19 296 27 HOH HOH A . J 6 HOH 20 297 28 HOH HOH A . J 6 HOH 21 298 29 HOH HOH A . J 6 HOH 22 299 30 HOH HOH A . J 6 HOH 23 300 31 HOH HOH A . J 6 HOH 24 301 32 HOH HOH A . J 6 HOH 25 302 33 HOH HOH A . J 6 HOH 26 303 34 HOH HOH A . J 6 HOH 27 304 35 HOH HOH A . J 6 HOH 28 305 36 HOH HOH A . J 6 HOH 29 306 37 HOH HOH A . J 6 HOH 30 307 38 HOH HOH A . J 6 HOH 31 308 39 HOH HOH A . J 6 HOH 32 309 40 HOH HOH A . J 6 HOH 33 310 41 HOH HOH A . J 6 HOH 34 311 42 HOH HOH A . J 6 HOH 35 312 43 HOH HOH A . J 6 HOH 36 313 44 HOH HOH A . J 6 HOH 37 314 45 HOH HOH A . J 6 HOH 38 315 46 HOH HOH A . J 6 HOH 39 316 47 HOH HOH A . J 6 HOH 40 317 48 HOH HOH A . J 6 HOH 41 318 49 HOH HOH A . J 6 HOH 42 319 50 HOH HOH A . J 6 HOH 43 320 51 HOH HOH A . J 6 HOH 44 321 52 HOH HOH A . J 6 HOH 45 322 53 HOH HOH A . J 6 HOH 46 323 54 HOH HOH A . J 6 HOH 47 324 55 HOH HOH A . J 6 HOH 48 325 56 HOH HOH A . J 6 HOH 49 326 57 HOH HOH A . J 6 HOH 50 327 58 HOH HOH A . J 6 HOH 51 328 59 HOH HOH A . J 6 HOH 52 329 60 HOH HOH A . J 6 HOH 53 330 61 HOH HOH A . J 6 HOH 54 331 62 HOH HOH A . J 6 HOH 55 332 63 HOH HOH A . J 6 HOH 56 333 64 HOH HOH A . J 6 HOH 57 334 65 HOH HOH A . J 6 HOH 58 335 66 HOH HOH A . J 6 HOH 59 336 67 HOH HOH A . J 6 HOH 60 337 68 HOH HOH A . J 6 HOH 61 338 69 HOH HOH A . J 6 HOH 62 339 70 HOH HOH A . J 6 HOH 63 340 71 HOH HOH A . J 6 HOH 64 341 72 HOH HOH A . J 6 HOH 65 342 73 HOH HOH A . J 6 HOH 66 343 74 HOH HOH A . J 6 HOH 67 344 75 HOH HOH A . J 6 HOH 68 345 76 HOH HOH A . J 6 HOH 69 346 77 HOH HOH A . J 6 HOH 70 347 78 HOH HOH A . J 6 HOH 71 348 79 HOH HOH A . J 6 HOH 72 349 80 HOH HOH A . J 6 HOH 73 350 81 HOH HOH A . J 6 HOH 74 351 82 HOH HOH A . J 6 HOH 75 352 83 HOH HOH A . J 6 HOH 76 353 84 HOH HOH A . J 6 HOH 77 354 85 HOH HOH A . J 6 HOH 78 355 86 HOH HOH A . J 6 HOH 79 356 87 HOH HOH A . J 6 HOH 80 357 88 HOH HOH A . J 6 HOH 81 358 89 HOH HOH A . J 6 HOH 82 359 90 HOH HOH A . J 6 HOH 83 360 91 HOH HOH A . J 6 HOH 84 361 92 HOH HOH A . J 6 HOH 85 362 93 HOH HOH A . J 6 HOH 86 363 94 HOH HOH A . J 6 HOH 87 364 95 HOH HOH A . J 6 HOH 88 365 96 HOH HOH A . J 6 HOH 89 366 97 HOH HOH A . J 6 HOH 90 367 98 HOH HOH A . J 6 HOH 91 368 99 HOH HOH A . J 6 HOH 92 369 100 HOH HOH A . J 6 HOH 93 370 101 HOH HOH A . J 6 HOH 94 371 102 HOH HOH A . J 6 HOH 95 372 103 HOH HOH A . J 6 HOH 96 373 104 HOH HOH A . J 6 HOH 97 374 105 HOH HOH A . J 6 HOH 98 375 106 HOH HOH A . J 6 HOH 99 376 107 HOH HOH A . J 6 HOH 100 377 108 HOH HOH A . J 6 HOH 101 378 109 HOH HOH A . J 6 HOH 102 379 110 HOH HOH A . J 6 HOH 103 380 111 HOH HOH A . J 6 HOH 104 381 112 HOH HOH A . J 6 HOH 105 382 113 HOH HOH A . J 6 HOH 106 383 114 HOH HOH A . J 6 HOH 107 384 115 HOH HOH A . J 6 HOH 108 385 116 HOH HOH A . J 6 HOH 109 386 117 HOH HOH A . J 6 HOH 110 387 118 HOH HOH A . J 6 HOH 111 388 119 HOH HOH A . J 6 HOH 112 389 120 HOH HOH A . J 6 HOH 113 390 121 HOH HOH A . J 6 HOH 114 391 122 HOH HOH A . J 6 HOH 115 392 123 HOH HOH A . J 6 HOH 116 393 124 HOH HOH A . J 6 HOH 117 394 125 HOH HOH A . J 6 HOH 118 395 126 HOH HOH A . J 6 HOH 119 396 127 HOH HOH A . J 6 HOH 120 397 128 HOH HOH A . J 6 HOH 121 398 129 HOH HOH A . J 6 HOH 122 399 130 HOH HOH A . J 6 HOH 123 400 131 HOH HOH A . J 6 HOH 124 401 132 HOH HOH A . J 6 HOH 125 402 133 HOH HOH A . J 6 HOH 126 403 134 HOH HOH A . J 6 HOH 127 404 135 HOH HOH A . J 6 HOH 128 405 136 HOH HOH A . J 6 HOH 129 406 137 HOH HOH A . J 6 HOH 130 407 138 HOH HOH A . J 6 HOH 131 408 139 HOH HOH A . J 6 HOH 132 409 140 HOH HOH A . J 6 HOH 133 410 141 HOH HOH A . J 6 HOH 134 411 142 HOH HOH A . J 6 HOH 135 412 143 HOH HOH A . J 6 HOH 136 413 144 HOH HOH A . J 6 HOH 137 414 145 HOH HOH A . J 6 HOH 138 415 146 HOH HOH A . J 6 HOH 139 416 147 HOH HOH A . J 6 HOH 140 417 148 HOH HOH A . J 6 HOH 141 418 149 HOH HOH A . J 6 HOH 142 419 150 HOH HOH A . J 6 HOH 143 420 151 HOH HOH A . J 6 HOH 144 421 152 HOH HOH A . J 6 HOH 145 422 153 HOH HOH A . J 6 HOH 146 423 154 HOH HOH A . J 6 HOH 147 424 155 HOH HOH A . J 6 HOH 148 425 156 HOH HOH A . J 6 HOH 149 426 157 HOH HOH A . J 6 HOH 150 427 158 HOH HOH A . J 6 HOH 151 428 159 HOH HOH A . J 6 HOH 152 429 160 HOH HOH A . J 6 HOH 153 430 161 HOH HOH A . J 6 HOH 154 431 162 HOH HOH A . J 6 HOH 155 432 163 HOH HOH A . J 6 HOH 156 433 164 HOH HOH A . J 6 HOH 157 434 165 HOH HOH A . J 6 HOH 158 435 166 HOH HOH A . J 6 HOH 159 436 167 HOH HOH A . J 6 HOH 160 437 168 HOH HOH A . J 6 HOH 161 438 169 HOH HOH A . J 6 HOH 162 439 170 HOH HOH A . J 6 HOH 163 440 171 HOH HOH A . J 6 HOH 164 441 172 HOH HOH A . J 6 HOH 165 442 173 HOH HOH A . J 6 HOH 166 443 174 HOH HOH A . J 6 HOH 167 444 175 HOH HOH A . J 6 HOH 168 445 176 HOH HOH A . J 6 HOH 169 446 177 HOH HOH A . J 6 HOH 170 447 178 HOH HOH A . J 6 HOH 171 448 179 HOH HOH A . J 6 HOH 172 449 180 HOH HOH A . J 6 HOH 173 450 181 HOH HOH A . J 6 HOH 174 451 182 HOH HOH A . J 6 HOH 175 452 183 HOH HOH A . J 6 HOH 176 453 184 HOH HOH A . J 6 HOH 177 454 185 HOH HOH A . J 6 HOH 178 455 186 HOH HOH A . J 6 HOH 179 456 187 HOH HOH A . J 6 HOH 180 457 188 HOH HOH A . J 6 HOH 181 458 189 HOH HOH A . J 6 HOH 182 459 190 HOH HOH A . J 6 HOH 183 460 191 HOH HOH A . J 6 HOH 184 461 192 HOH HOH A . J 6 HOH 185 462 193 HOH HOH A . J 6 HOH 186 463 194 HOH HOH A . J 6 HOH 187 464 195 HOH HOH A . J 6 HOH 188 465 196 HOH HOH A . J 6 HOH 189 466 197 HOH HOH A . J 6 HOH 190 467 198 HOH HOH A . J 6 HOH 191 468 199 HOH HOH A . J 6 HOH 192 469 200 HOH HOH A . J 6 HOH 193 470 201 HOH HOH A . J 6 HOH 194 471 202 HOH HOH A . J 6 HOH 195 472 203 HOH HOH A . J 6 HOH 196 473 204 HOH HOH A . J 6 HOH 197 474 205 HOH HOH A . J 6 HOH 198 475 206 HOH HOH A . J 6 HOH 199 476 207 HOH HOH A . J 6 HOH 200 477 208 HOH HOH A . J 6 HOH 201 478 209 HOH HOH A . J 6 HOH 202 479 210 HOH HOH A . J 6 HOH 203 480 211 HOH HOH A . J 6 HOH 204 481 212 HOH HOH A . J 6 HOH 205 482 213 HOH HOH A . J 6 HOH 206 483 214 HOH HOH A . J 6 HOH 207 484 215 HOH HOH A . J 6 HOH 208 485 216 HOH HOH A . J 6 HOH 209 486 217 HOH HOH A . J 6 HOH 210 487 218 HOH HOH A . J 6 HOH 211 488 219 HOH HOH A . J 6 HOH 212 489 220 HOH HOH A . J 6 HOH 213 490 221 HOH HOH A . J 6 HOH 214 491 222 HOH HOH A . J 6 HOH 215 492 223 HOH HOH A . J 6 HOH 216 493 224 HOH HOH A . J 6 HOH 217 494 225 HOH HOH A . J 6 HOH 218 495 226 HOH HOH A . J 6 HOH 219 496 227 HOH HOH A . J 6 HOH 220 497 228 HOH HOH A . J 6 HOH 221 498 229 HOH HOH A . J 6 HOH 222 499 230 HOH HOH A . J 6 HOH 223 500 231 HOH HOH A . J 6 HOH 224 501 232 HOH HOH A . J 6 HOH 225 502 233 HOH HOH A . J 6 HOH 226 503 234 HOH HOH A . J 6 HOH 227 504 235 HOH HOH A . J 6 HOH 228 505 236 HOH HOH A . J 6 HOH 229 506 237 HOH HOH A . J 6 HOH 230 507 238 HOH HOH A . J 6 HOH 231 508 239 HOH HOH A . J 6 HOH 232 509 240 HOH HOH A . J 6 HOH 233 510 241 HOH HOH A . J 6 HOH 234 511 242 HOH HOH A . J 6 HOH 235 512 243 HOH HOH A . J 6 HOH 236 513 244 HOH HOH A . J 6 HOH 237 514 245 HOH HOH A . J 6 HOH 238 515 246 HOH HOH A . J 6 HOH 239 516 247 HOH HOH A . J 6 HOH 240 517 248 HOH HOH A . J 6 HOH 241 518 249 HOH HOH A . J 6 HOH 242 519 250 HOH HOH A . J 6 HOH 243 520 251 HOH HOH A . J 6 HOH 244 521 252 HOH HOH A . J 6 HOH 245 522 253 HOH HOH A . J 6 HOH 246 523 254 HOH HOH A . J 6 HOH 247 524 255 HOH HOH A . J 6 HOH 248 525 256 HOH HOH A . J 6 HOH 249 526 257 HOH HOH A . J 6 HOH 250 527 258 HOH HOH A . J 6 HOH 251 528 259 HOH HOH A . J 6 HOH 252 529 260 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 50 A MSE 49 ? MET SELENOMETHIONINE 2 A MSE 58 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 115 A MSE 114 ? MET SELENOMETHIONINE 4 A MSE 140 A MSE 139 ? MET SELENOMETHIONINE 5 A MSE 190 A MSE 189 ? MET SELENOMETHIONINE 6 A MSE 199 A MSE 198 ? MET SELENOMETHIONINE 7 A MSE 202 A MSE 201 ? MET SELENOMETHIONINE 8 A MSE 215 A MSE 214 ? MET SELENOMETHIONINE 9 A MSE 258 A MSE 257 ? MET SELENOMETHIONINE 10 A MSE 265 A MSE 264 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 31.8381 _pdbx_refine_tls.origin_y 3.6172 _pdbx_refine_tls.origin_z -0.0326 _pdbx_refine_tls.T[1][1] 0.0494 _pdbx_refine_tls.T[2][2] 0.0568 _pdbx_refine_tls.T[3][3] 0.0141 _pdbx_refine_tls.T[1][2] -0.0072 _pdbx_refine_tls.T[1][3] -0.0054 _pdbx_refine_tls.T[2][3] 0.0018 _pdbx_refine_tls.L[1][1] 2.2502 _pdbx_refine_tls.L[2][2] 2.8390 _pdbx_refine_tls.L[3][3] 0.9559 _pdbx_refine_tls.L[1][2] -0.5615 _pdbx_refine_tls.L[1][3] -0.1807 _pdbx_refine_tls.L[2][3] -0.3919 _pdbx_refine_tls.S[1][1] 0.0035 _pdbx_refine_tls.S[2][2] -0.0341 _pdbx_refine_tls.S[3][3] 0.0306 _pdbx_refine_tls.S[1][2] -0.0247 _pdbx_refine_tls.S[1][3] -0.1553 _pdbx_refine_tls.S[2][3] -0.0437 _pdbx_refine_tls.S[2][1] -0.0064 _pdbx_refine_tls.S[3][1] 0.0686 _pdbx_refine_tls.S[3][2] -0.0085 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 6 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 266 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3LLC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 113 ? ? 57.38 -115.28 2 1 SER A 178 ? ? 179.05 156.34 3 1 ASP A 245 ? ? -103.30 -167.94 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 106 ? CE ? A LYS 107 CE 2 1 Y 1 A LYS 106 ? NZ ? A LYS 107 NZ 3 1 Y 1 A ASP 131 ? CG ? A ASP 132 CG 4 1 Y 1 A ASP 131 ? OD1 ? A ASP 132 OD1 5 1 Y 1 A ASP 131 ? OD2 ? A ASP 132 OD2 6 1 Y 1 A GLU 167 ? CG ? A GLU 168 CG 7 1 Y 1 A GLU 167 ? CD ? A GLU 168 CD 8 1 Y 1 A GLU 167 ? OE1 ? A GLU 168 OE1 9 1 Y 1 A GLU 167 ? OE2 ? A GLU 168 OE2 10 1 Y 1 A GLU 180 ? CD ? A GLU 181 CD 11 1 Y 1 A GLU 180 ? OE1 ? A GLU 181 OE1 12 1 Y 1 A GLU 180 ? OE2 ? A GLU 181 OE2 13 1 Y 1 A ARG 247 ? NE ? A ARG 248 NE 14 1 Y 1 A ARG 247 ? CZ ? A ARG 248 CZ 15 1 Y 1 A ARG 247 ? NH1 ? A ARG 248 NH1 16 1 Y 1 A ARG 247 ? NH2 ? A ARG 248 NH2 17 1 Y 1 A ARG 262 ? CZ ? A ARG 263 CZ 18 1 Y 1 A ARG 262 ? NH1 ? A ARG 263 NH1 19 1 Y 1 A ARG 262 ? NH2 ? A ARG 263 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A THR 2 ? A THR 3 4 1 Y 1 A ASN 3 ? A ASN 4 5 1 Y 1 A VAL 4 ? A VAL 5 6 1 Y 1 A GLY 5 ? A GLY 6 7 1 Y 1 A PRO 267 ? A PRO 268 8 1 Y 1 A ARG 268 ? A ARG 269 9 1 Y 1 A PRO 269 ? A PRO 270 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 1,2-ETHANEDIOL EDO 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'TETRAETHYLENE GLYCOL' PG4 6 water HOH #