data_3LLV # _entry.id 3LLV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LLV RCSB RCSB057437 WWPDB D_1000057437 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC62008.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3LLV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stein, A.J.' 1 'Chang, C.' 2 'Weger, A.' 3 'Hendricks, R.' 4 'Clancy, S.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'The Crystal Structure of the NAD(P)-binding domain of an Exopolyphosphatase-related protein from Archaeoglobus fulgidus to 1.7A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stein, A.J.' 1 primary 'Chang, C.' 2 primary 'Weger, A.' 3 primary 'Hendricks, R.' 4 primary 'Clancy, S.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 3LLV _cell.length_a 39.994 _cell.length_b 39.994 _cell.length_c 295.489 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 178 _symmetry.entry_id 3LLV _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Exopolyphosphatase-related protein' 15563.288 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 59 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLI TGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAF(MSE)DKIKK(MSE)ETL ; _entity_poly.pdbx_seq_one_letter_code_can ;MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD DEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKKMETL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC62008.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 GLU n 1 4 ASN n 1 5 GLY n 1 6 ARG n 1 7 TYR n 1 8 GLU n 1 9 TYR n 1 10 ILE n 1 11 VAL n 1 12 ILE n 1 13 GLY n 1 14 SER n 1 15 GLU n 1 16 ALA n 1 17 ALA n 1 18 GLY n 1 19 VAL n 1 20 GLY n 1 21 LEU n 1 22 VAL n 1 23 ARG n 1 24 GLU n 1 25 LEU n 1 26 THR n 1 27 ALA n 1 28 ALA n 1 29 GLY n 1 30 LYS n 1 31 LYS n 1 32 VAL n 1 33 LEU n 1 34 ALA n 1 35 VAL n 1 36 ASP n 1 37 LYS n 1 38 SER n 1 39 LYS n 1 40 GLU n 1 41 LYS n 1 42 ILE n 1 43 GLU n 1 44 LEU n 1 45 LEU n 1 46 GLU n 1 47 ASP n 1 48 GLU n 1 49 GLY n 1 50 PHE n 1 51 ASP n 1 52 ALA n 1 53 VAL n 1 54 ILE n 1 55 ALA n 1 56 ASP n 1 57 PRO n 1 58 THR n 1 59 ASP n 1 60 GLU n 1 61 SER n 1 62 PHE n 1 63 TYR n 1 64 ARG n 1 65 SER n 1 66 LEU n 1 67 ASP n 1 68 LEU n 1 69 GLU n 1 70 GLY n 1 71 VAL n 1 72 SER n 1 73 ALA n 1 74 VAL n 1 75 LEU n 1 76 ILE n 1 77 THR n 1 78 GLY n 1 79 SER n 1 80 ASP n 1 81 ASP n 1 82 GLU n 1 83 PHE n 1 84 ASN n 1 85 LEU n 1 86 LYS n 1 87 ILE n 1 88 LEU n 1 89 LYS n 1 90 ALA n 1 91 LEU n 1 92 ARG n 1 93 SER n 1 94 VAL n 1 95 SER n 1 96 ASP n 1 97 VAL n 1 98 TYR n 1 99 ALA n 1 100 ILE n 1 101 VAL n 1 102 ARG n 1 103 VAL n 1 104 SER n 1 105 SER n 1 106 PRO n 1 107 LYS n 1 108 LYS n 1 109 LYS n 1 110 GLU n 1 111 GLU n 1 112 PHE n 1 113 GLU n 1 114 GLU n 1 115 ALA n 1 116 GLY n 1 117 ALA n 1 118 ASN n 1 119 LEU n 1 120 VAL n 1 121 VAL n 1 122 LEU n 1 123 VAL n 1 124 ALA n 1 125 ASP n 1 126 ALA n 1 127 VAL n 1 128 LYS n 1 129 GLN n 1 130 ALA n 1 131 PHE n 1 132 MSE n 1 133 ASP n 1 134 LYS n 1 135 ILE n 1 136 LYS n 1 137 LYS n 1 138 MSE n 1 139 GLU n 1 140 THR n 1 141 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AF_2029 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O28250_ARCFU _struct_ref.pdbx_db_accession O28250 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD DEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKKMETL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LLV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 141 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O28250 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 141 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 141 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LLV _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 45.9 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20% PEG MME 5000, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-12-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3LLV _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 50.000 _reflns.number_obs 19804 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_netI_over_sigmaI 8.900 _reflns.pdbx_chi_squared 1.475 _reflns.pdbx_redundancy 6.100 _reflns.percent_possible_obs 99.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.66 ? ? ? 0.430 ? ? 0.835 6.20 ? 1898 99.80 1 1 1.66 1.72 ? ? ? 0.300 ? ? 0.858 6.20 ? 1905 99.50 2 1 1.72 1.80 ? ? ? 0.215 ? ? 0.899 6.20 ? 1907 99.80 3 1 1.80 1.90 ? ? ? 0.166 ? ? 0.983 6.10 ? 1944 99.70 4 1 1.90 2.02 ? ? ? 0.117 ? ? 1.038 6.20 ? 1931 99.70 5 1 2.02 2.17 ? ? ? 0.082 ? ? 1.180 6.20 ? 1957 99.60 6 1 2.17 2.39 ? ? ? 0.071 ? ? 1.343 6.20 ? 1977 99.80 7 1 2.39 2.74 ? ? ? 0.071 ? ? 1.904 6.20 ? 2011 99.90 8 1 2.74 3.45 ? ? ? 0.062 ? ? 2.597 6.00 ? 2075 100.00 9 1 3.45 50.00 ? ? ? 0.047 ? ? 2.940 5.80 ? 2199 94.80 10 1 # _refine.entry_id 3LLV _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 29.880 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.320 _refine.ls_number_reflns_obs 16627 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.235 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 849 _refine.B_iso_mean 10.820 _refine.aniso_B[1][1] 0.010 _refine.aniso_B[2][2] 0.010 _refine.aniso_B[3][3] -0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.pdbx_overall_ESU_R 0.112 _refine.pdbx_overall_ESU_R_Free 0.107 _refine.overall_SU_ML 0.073 _refine.overall_SU_B 4.829 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 988 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 1052 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 29.880 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1034 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1408 1.291 1.996 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 143 5.106 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40 32.243 25.750 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 185 11.114 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 13.146 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 172 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 755 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 676 0.621 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1085 1.046 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 358 2.019 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 317 3.232 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.750 _refine_ls_shell.number_reflns_R_work 1136 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1202 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LLV _struct.title 'The Crystal Structure of the NAD(P)-binding domain of an Exopolyphosphatase-related protein from Archaeoglobus fulgidus to 1.7A' _struct.pdbx_descriptor 'Exopolyphosphatase-related protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LLV _struct_keywords.pdbx_keywords 'NAD(P) binding protein' _struct_keywords.text ;NAD(P)-binding, Rossmann, Exopolyphosphatase-related, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, NAD(P) binding protein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 15 ? ALA A 28 ? GLU A 15 ALA A 28 1 ? 14 HELX_P HELX_P2 2 SER A 38 ? GLU A 48 ? SER A 38 GLU A 48 1 ? 11 HELX_P HELX_P3 3 ASP A 59 ? LEU A 66 ? ASP A 59 LEU A 66 1 ? 8 HELX_P HELX_P4 4 ASP A 80 ? SER A 95 ? ASP A 80 SER A 95 1 ? 16 HELX_P HELX_P5 5 SER A 105 ? LYS A 107 ? SER A 105 LYS A 107 5 ? 3 HELX_P HELX_P6 6 LYS A 108 ? ALA A 115 ? LYS A 108 ALA A 115 1 ? 8 HELX_P HELX_P7 7 VAL A 123 ? MSE A 138 ? VAL A 123 MSE A 138 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 131 C ? ? ? 1_555 A MSE 132 N ? ? A PHE 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 132 C ? ? ? 1_555 A ASP 133 N ? ? A MSE 132 A ASP 133 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A LYS 137 C ? ? ? 1_555 A MSE 138 N ? ? A LYS 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 51 ? ILE A 54 ? ASP A 51 ILE A 54 A 2 VAL A 32 ? ASP A 36 ? VAL A 32 ASP A 36 A 3 TYR A 9 ? ILE A 12 ? TYR A 9 ILE A 12 A 4 ALA A 73 ? ILE A 76 ? ALA A 73 ILE A 76 A 5 ALA A 99 ? VAL A 103 ? ALA A 99 VAL A 103 A 6 LEU A 119 ? LEU A 122 ? LEU A 119 LEU A 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 53 ? O VAL A 53 N ALA A 34 ? N ALA A 34 A 2 3 O VAL A 35 ? O VAL A 35 N VAL A 11 ? N VAL A 11 A 3 4 N ILE A 10 ? N ILE A 10 O LEU A 75 ? O LEU A 75 A 4 5 N ILE A 76 ? N ILE A 76 O ARG A 102 ? O ARG A 102 A 5 6 N VAL A 101 ? N VAL A 101 O VAL A 121 ? O VAL A 121 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 142' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 15 ? GLU A 15 . ? 1_555 ? 2 AC1 6 ALA A 16 ? ALA A 16 . ? 1_555 ? 3 AC1 6 ALA A 17 ? ALA A 17 . ? 1_555 ? 4 AC1 6 ARG A 102 ? ARG A 102 . ? 1_555 ? 5 AC1 6 ALA A 124 ? ALA A 124 . ? 12_565 ? 6 AC1 6 HOH C . ? HOH A 154 . ? 12_565 ? # _atom_sites.entry_id 3LLV _atom_sites.fract_transf_matrix[1][1] 0.025004 _atom_sites.fract_transf_matrix[1][2] 0.014436 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028872 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003384 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 MSE 132 132 132 MSE MSE A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 MSE 138 138 138 MSE MSE A . n A 1 139 GLU 139 139 ? ? ? A . n A 1 140 THR 140 140 ? ? ? A . n A 1 141 LEU 141 141 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 142 1 PO4 PO4 A . C 3 HOH 1 143 1 HOH HOH A . C 3 HOH 2 144 2 HOH HOH A . C 3 HOH 3 145 3 HOH HOH A . C 3 HOH 4 146 4 HOH HOH A . C 3 HOH 5 147 5 HOH HOH A . C 3 HOH 6 148 6 HOH HOH A . C 3 HOH 7 149 7 HOH HOH A . C 3 HOH 8 150 8 HOH HOH A . C 3 HOH 9 151 9 HOH HOH A . C 3 HOH 10 152 10 HOH HOH A . C 3 HOH 11 153 11 HOH HOH A . C 3 HOH 12 154 12 HOH HOH A . C 3 HOH 13 155 13 HOH HOH A . C 3 HOH 14 156 14 HOH HOH A . C 3 HOH 15 157 15 HOH HOH A . C 3 HOH 16 158 16 HOH HOH A . C 3 HOH 17 159 17 HOH HOH A . C 3 HOH 18 160 18 HOH HOH A . C 3 HOH 19 161 19 HOH HOH A . C 3 HOH 20 162 20 HOH HOH A . C 3 HOH 21 163 21 HOH HOH A . C 3 HOH 22 164 22 HOH HOH A . C 3 HOH 23 165 23 HOH HOH A . C 3 HOH 24 166 24 HOH HOH A . C 3 HOH 25 167 25 HOH HOH A . C 3 HOH 26 168 26 HOH HOH A . C 3 HOH 27 169 27 HOH HOH A . C 3 HOH 28 170 28 HOH HOH A . C 3 HOH 29 171 29 HOH HOH A . C 3 HOH 30 172 30 HOH HOH A . C 3 HOH 31 173 31 HOH HOH A . C 3 HOH 32 174 32 HOH HOH A . C 3 HOH 33 175 33 HOH HOH A . C 3 HOH 34 176 34 HOH HOH A . C 3 HOH 35 177 35 HOH HOH A . C 3 HOH 36 178 36 HOH HOH A . C 3 HOH 37 179 37 HOH HOH A . C 3 HOH 38 180 38 HOH HOH A . C 3 HOH 39 181 39 HOH HOH A . C 3 HOH 40 182 40 HOH HOH A . C 3 HOH 41 183 41 HOH HOH A . C 3 HOH 42 184 42 HOH HOH A . C 3 HOH 43 185 43 HOH HOH A . C 3 HOH 44 186 44 HOH HOH A . C 3 HOH 45 187 45 HOH HOH A . C 3 HOH 46 188 46 HOH HOH A . C 3 HOH 47 189 47 HOH HOH A . C 3 HOH 48 190 48 HOH HOH A . C 3 HOH 49 191 49 HOH HOH A . C 3 HOH 50 192 50 HOH HOH A . C 3 HOH 51 193 51 HOH HOH A . C 3 HOH 52 194 52 HOH HOH A . C 3 HOH 53 195 53 HOH HOH A . C 3 HOH 54 196 54 HOH HOH A . C 3 HOH 55 197 55 HOH HOH A . C 3 HOH 56 198 56 HOH HOH A . C 3 HOH 57 199 57 HOH HOH A . C 3 HOH 58 200 58 HOH HOH A . C 3 HOH 59 201 59 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 132 A MSE 132 ? MET SELENOMETHIONINE 2 A MSE 138 A MSE 138 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3250 ? 2 MORE -55 ? 2 'SSA (A^2)' 12110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -19.9970000000 0.8660254038 -0.5000000000 0.0000000000 34.6358199990 0.0000000000 0.0000000000 -1.0000000000 49.2481666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 9.3065 11.9061 10.1560 0.2891 0.0765 0.1257 0.0440 0.0098 -0.0403 8.9198 7.7238 4.9626 3.3546 2.0359 1.3313 -0.0494 0.1295 -0.0802 0.2123 -0.4430 0.0219 0.1395 0.9486 -0.0136 'X-RAY DIFFRACTION' 2 ? refined 13.2124 17.1304 21.2265 0.4711 0.2280 0.1174 0.2892 0.0323 -0.0023 2.1139 14.9821 28.7299 1.2698 -1.4552 -7.0251 -0.4933 0.1814 0.3119 -0.1995 -0.1372 -0.2678 -0.0236 1.3910 1.7084 'X-RAY DIFFRACTION' 3 ? refined 6.7551 10.9510 20.6123 0.4624 0.1792 0.2441 0.0613 0.0340 0.0288 10.2585 6.8819 5.9917 4.1271 0.3341 -2.5942 -0.1084 0.2757 -0.1673 -0.4497 -0.0624 0.1290 -0.2035 0.5758 -0.3776 'X-RAY DIFFRACTION' 4 ? refined 5.1341 5.9465 15.8435 0.6213 0.1455 0.3512 0.0051 -0.0251 0.0570 3.4090 2.9861 21.5943 2.9232 -2.4741 0.9103 -0.0257 0.1553 -0.1296 0.1942 0.0756 0.0834 0.0503 1.3740 -0.7389 'X-RAY DIFFRACTION' 5 ? refined 21.2383 14.9602 15.0502 0.2965 0.3717 0.2169 0.2431 -0.0726 -0.0670 10.3367 8.7568 2.3111 3.6035 3.3420 2.6822 -0.1758 0.1516 0.0241 -0.5107 0.2593 -0.6493 0.2344 0.3251 0.3552 'X-RAY DIFFRACTION' 6 ? refined 21.2858 9.4098 19.5010 0.4683 0.2734 0.2187 0.2649 -0.0779 -0.0320 10.5089 18.2815 0.8649 3.9303 -1.8431 -3.7036 -0.3901 0.3239 0.0662 -0.2270 0.1706 -0.4101 1.0271 -0.1255 -0.0138 'X-RAY DIFFRACTION' 7 ? refined 16.3614 6.7973 16.8702 0.4045 0.2594 0.3320 0.2287 -0.0049 0.0731 7.3477 3.1895 4.5995 4.6720 -2.1389 -2.0218 -0.3552 0.3635 -0.0083 0.3384 0.0634 0.2071 -0.2877 0.8570 -0.0461 'X-RAY DIFFRACTION' 8 ? refined 21.0587 19.4131 7.4109 0.1683 0.5108 0.2440 0.1602 -0.0406 -0.0949 3.1363 6.8793 3.4546 4.3825 -3.2408 -4.2669 -0.0235 -0.0143 0.0379 -0.3683 -0.1045 -0.4610 0.2023 0.1153 0.5986 'X-RAY DIFFRACTION' 9 ? refined 17.2444 17.8269 0.5543 0.0661 0.0989 0.1131 0.0233 0.0047 -0.0408 9.6627 4.1332 12.2040 -0.0551 -4.7703 -0.3674 0.0472 0.0194 -0.0665 0.2319 0.1136 -0.0142 -0.0989 -0.0109 0.0125 'X-RAY DIFFRACTION' 10 ? refined 9.9734 11.3338 1.4755 0.4381 0.2576 0.2670 -0.0906 0.0685 -0.1520 52.7576 2.4141 6.9744 2.0388 -18.1870 -1.7341 -1.1254 0.3146 0.8108 1.9865 -1.8016 -0.1762 -0.0595 0.6719 -0.8249 'X-RAY DIFFRACTION' 11 ? refined 8.6336 19.7350 12.6450 0.0943 0.0269 0.0914 0.0396 0.0006 -0.0219 5.6142 3.2961 6.1937 1.0410 0.4275 1.3149 -0.1064 0.2064 -0.1000 0.0924 -0.1201 0.0171 0.2468 0.4112 0.2226 'X-RAY DIFFRACTION' 12 ? refined 15.2067 29.5395 13.1563 0.0846 0.1093 0.2031 0.0017 -0.0140 -0.0587 9.3351 11.3098 16.5460 -1.8984 -2.4339 3.5549 0.0602 0.2353 -0.2956 -0.0836 0.5665 -0.6464 0.0600 -0.3699 0.7261 'X-RAY DIFFRACTION' 13 ? refined 13.5870 27.6171 5.8504 0.0596 0.0755 0.1231 -0.0097 0.0168 -0.0179 6.8634 4.5621 10.7920 -3.4415 0.2035 0.9551 0.0100 0.1087 -0.1187 0.0858 0.3916 -0.3350 -0.0498 -0.3869 0.2980 'X-RAY DIFFRACTION' 14 ? refined 9.5162 21.7367 -0.3461 0.0518 0.1281 0.0686 0.0145 -0.0008 -0.0179 5.3958 3.9328 2.7420 1.9246 -1.5744 -0.9702 0.0137 0.0442 -0.0579 0.5006 -0.0607 -0.0123 -0.2098 0.0161 -0.0264 'X-RAY DIFFRACTION' 15 ? refined 6.0458 25.5265 12.7920 0.0840 0.0294 0.0969 0.0369 0.0005 -0.0195 1.8682 2.1085 5.8141 -0.2695 -0.8317 2.5193 -0.0156 -0.0641 0.0797 0.0175 0.1986 0.0517 0.1063 -0.1073 -0.1927 'X-RAY DIFFRACTION' 16 ? refined 4.7518 36.1816 13.0507 0.1821 0.0919 0.3571 0.0587 -0.0214 0.0094 5.5939 18.2440 12.8095 -9.8867 -1.3042 -0.7741 0.0153 0.2778 -0.2931 -0.0788 0.1298 -0.1034 0.1344 -0.6673 -0.4870 'X-RAY DIFFRACTION' 17 ? refined 5.5308 32.5668 6.8720 0.1362 0.0797 0.1542 0.0491 -0.0043 0.0154 7.8413 7.8345 10.4320 -0.2239 -0.9464 0.4748 0.0590 0.0091 -0.0680 0.1522 0.3932 0.1398 -0.3816 -0.8632 -0.2430 'X-RAY DIFFRACTION' 18 ? refined 2.1007 27.4609 16.3623 0.0969 0.0776 0.1353 0.0399 0.0163 -0.0155 0.6871 0.7155 16.7072 -0.6275 -1.7326 2.8775 0.0201 -0.0549 0.0348 0.0601 -0.0031 0.0238 -0.0207 -0.2810 -0.3225 'X-RAY DIFFRACTION' 19 ? refined -3.1960 27.2401 28.7450 0.1075 0.1578 0.1389 0.0635 -0.0039 -0.0121 10.6491 8.7561 15.9007 2.3489 -3.6171 2.3265 0.0731 -0.0713 -0.0018 0.1916 0.0376 0.4711 -0.3892 -0.1246 -1.2480 'X-RAY DIFFRACTION' 20 ? refined -6.9201 23.2377 34.5605 0.2183 0.3269 0.2225 -0.0322 -0.0109 0.0095 19.6476 20.5280 12.8821 0.0254 -8.4659 1.6143 0.1008 -0.2242 0.1233 -0.8299 -0.7584 0.3218 0.7746 0.9858 -0.3402 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 . . . . ? A 6 A 13 'X-RAY DIFFRACTION' ? 2 2 . . . . ? A 14 A 20 'X-RAY DIFFRACTION' ? 3 3 . . . . ? A 21 A 25 'X-RAY DIFFRACTION' ? 4 4 . . . . ? A 26 A 32 'X-RAY DIFFRACTION' ? 5 5 . . . . ? A 33 A 40 'X-RAY DIFFRACTION' ? 6 6 . . . . ? A 41 A 47 'X-RAY DIFFRACTION' ? 7 7 . . . . ? A 48 A 53 'X-RAY DIFFRACTION' ? 8 8 . . . . ? A 54 A 59 'X-RAY DIFFRACTION' ? 9 9 . . . . ? A 60 A 64 'X-RAY DIFFRACTION' ? 10 10 . . . . ? A 65 A 71 'X-RAY DIFFRACTION' ? 11 11 . . . . ? A 72 A 79 'X-RAY DIFFRACTION' ? 12 12 . . . . ? A 80 A 84 'X-RAY DIFFRACTION' ? 13 13 . . . . ? A 85 A 90 'X-RAY DIFFRACTION' ? 14 14 . . . . ? A 91 A 96 'X-RAY DIFFRACTION' ? 15 15 . . . . ? A 97 A 105 'X-RAY DIFFRACTION' ? 16 16 . . . . ? A 106 A 110 'X-RAY DIFFRACTION' ? 17 17 . . . . ? A 111 A 115 'X-RAY DIFFRACTION' ? 18 18 . . . . ? A 116 A 127 'X-RAY DIFFRACTION' ? 19 19 . . . . ? A 128 A 132 'X-RAY DIFFRACTION' ? 20 20 . . . . ? A 133 A 138 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 7 SHELX . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 DM . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 Coot . ? ? ? ? 'model building' ? ? ? 12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 6 ? CG ? A ARG 6 CG 2 1 Y 1 A ARG 6 ? CD ? A ARG 6 CD 3 1 Y 1 A ARG 6 ? NE ? A ARG 6 NE 4 1 Y 1 A ARG 6 ? CZ ? A ARG 6 CZ 5 1 Y 1 A ARG 6 ? NH1 ? A ARG 6 NH1 6 1 Y 1 A ARG 6 ? NH2 ? A ARG 6 NH2 7 1 Y 1 A GLU 15 ? CG ? A GLU 15 CG 8 1 Y 1 A GLU 15 ? CD ? A GLU 15 CD 9 1 Y 1 A GLU 15 ? OE1 ? A GLU 15 OE1 10 1 Y 1 A GLU 15 ? OE2 ? A GLU 15 OE2 11 1 Y 1 A LYS 31 ? CG ? A LYS 31 CG 12 1 Y 1 A LYS 31 ? CD ? A LYS 31 CD 13 1 Y 1 A LYS 31 ? CE ? A LYS 31 CE 14 1 Y 1 A LYS 31 ? NZ ? A LYS 31 NZ 15 1 Y 1 A LYS 37 ? CG ? A LYS 37 CG 16 1 Y 1 A LYS 37 ? CD ? A LYS 37 CD 17 1 Y 1 A LYS 37 ? CE ? A LYS 37 CE 18 1 Y 1 A LYS 37 ? NZ ? A LYS 37 NZ 19 1 Y 1 A LEU 44 ? CG ? A LEU 44 CG 20 1 Y 1 A LEU 44 ? CD1 ? A LEU 44 CD1 21 1 Y 1 A LEU 44 ? CD2 ? A LEU 44 CD2 22 1 Y 1 A GLU 69 ? CG ? A GLU 69 CG 23 1 Y 1 A GLU 69 ? CD ? A GLU 69 CD 24 1 Y 1 A GLU 69 ? OE1 ? A GLU 69 OE1 25 1 Y 1 A GLU 69 ? OE2 ? A GLU 69 OE2 26 1 Y 1 A LYS 136 ? CG ? A LYS 136 CG 27 1 Y 1 A LYS 136 ? CD ? A LYS 136 CD 28 1 Y 1 A LYS 136 ? CE ? A LYS 136 CE 29 1 Y 1 A LYS 136 ? NZ ? A LYS 136 NZ 30 1 Y 1 A LYS 137 ? CG ? A LYS 137 CG 31 1 Y 1 A LYS 137 ? CD ? A LYS 137 CD 32 1 Y 1 A LYS 137 ? CE ? A LYS 137 CE 33 1 Y 1 A LYS 137 ? NZ ? A LYS 137 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A GLU 139 ? A GLU 139 7 1 Y 1 A THR 140 ? A THR 140 8 1 Y 1 A LEU 141 ? A LEU 141 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #