data_3LO9 # _entry.id 3LO9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LO9 pdb_00003lo9 10.2210/pdb3lo9/pdb RCSB RCSB057523 ? ? WWPDB D_1000057523 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GNY 'Crystal structure of human alpha-defensin 1 (HNP1)' unspecified PDB 3LO1 'Crystal structure of human alpha-defensin 1 (Y16A mutant)' unspecified PDB 3LO2 'Crystal structure of human alpha-defensin 1 (Y21A mutant)' unspecified PDB 3LO4 'Crystal structure of human alpha-defensin 1 (R24A mutant)' unspecified PDB 3LO6 'Crystal structure of human alpha-defensin 1 (W26Aba mutant)' unspecified PDB 3LOE . unspecified # _pdbx_database_status.entry_id 3LO9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pazgier, M.' 1 'Lu, W.' 2 # _citation.id primary _citation.title 'Trp-26 imparts functional versatility to human alpha-defensin HNP1.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 16275 _citation.page_last 16285 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20220136 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.102749 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, G.' 1 ? primary 'Pazgier, M.' 2 ? primary 'de Leeuw, E.' 3 ? primary 'Rajabi, M.' 4 ? primary 'Li, J.' 5 ? primary 'Zou, G.' 6 ? primary 'Jung, G.' 7 ? primary 'Yuan, W.' 8 ? primary 'Lu, W.Y.' 9 ? primary 'Lehrer, R.I.' 10 ? primary 'Lu, W.' 11 ? # _cell.length_a 46.146 _cell.length_b 30.645 _cell.length_c 39.820 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3LO9 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3LO9 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Neutrophil defensin 1' 3393.085 2 ? W26Ahp 'UNP residues 65-94' ? 2 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HNP-1, HP-1, HP1, Defensin, alpha 1, HP 1-56, Neutrophil defensin 2, HNP-2, HP-2, HP2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'ACYCRIPACIAGERRYGTCIYQGRL(AHP)AFCC' _entity_poly.pdbx_seq_one_letter_code_can ACYCRIPACIAGERRYGTCIYQGRLAAFCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 TYR n 1 4 CYS n 1 5 ARG n 1 6 ILE n 1 7 PRO n 1 8 ALA n 1 9 CYS n 1 10 ILE n 1 11 ALA n 1 12 GLY n 1 13 GLU n 1 14 ARG n 1 15 ARG n 1 16 TYR n 1 17 GLY n 1 18 THR n 1 19 CYS n 1 20 ILE n 1 21 TYR n 1 22 GLN n 1 23 GLY n 1 24 ARG n 1 25 LEU n 1 26 AHP n 1 27 ALA n 1 28 PHE n 1 29 CYS n 1 30 CYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Protein naturally occurs in HUMAN' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEF1_HUMAN _struct_ref.pdbx_db_accession P59665 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ACYCRIPACIAGERRYGTCIYQGRLWAFCC _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LO9 A 1 ? 30 ? P59665 65 ? 94 ? 1 30 2 1 3LO9 B 1 ? 30 ? P59665 65 ? 94 ? 1 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LO9 AHP A 26 ? UNP P59665 TRP 90 'engineered mutation' 26 1 2 3LO9 AHP B 26 ? UNP P59665 TRP 90 'engineered mutation' 26 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AHP 'L-peptide linking' n '2-AMINO-HEPTANOIC ACID' ? 'C7 H15 N O2' 145.199 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.crystals_number 1 _exptl.entry_id 3LO9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;0.1 M sodium cacodylate trihydrate pH 6.5; 0.2 M sodium citrate tribasic dehydrate; 30% isopropanol , VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2008-10-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3LO9 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.56 _reflns.d_resolution_low 30.643 _reflns.number_all 8440 _reflns.number_obs 8232 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 20.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 88.2 _reflns_shell.Rmerge_I_obs 0.132 _reflns_shell.meanI_over_sigI_obs 18.8 _reflns_shell.pdbx_Rsym_value 0.141 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.number_unique_all 737 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LO9 _refine.ls_d_res_high 1.560 _refine.ls_d_res_low 15.000 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.580 _refine.ls_number_reflns_obs 8220 _refine.ls_number_reflns_all 7837 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_R_work 0.190 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.208 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 383 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 12.556 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] 0.160 _refine.aniso_B[3][3] -0.150 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.086 _refine.overall_SU_ML 0.055 _refine.overall_SU_B 3.411 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3GNY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 42.57 _refine.B_iso_min 4.60 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 466 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 528 _refine_hist.d_res_high 1.560 _refine_hist.d_res_low 15.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 476 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 634 1.733 1.993 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 54 7.929 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 20 19.562 18.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 70 10.523 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 15.653 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 64 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 350 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 292 1.016 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 454 1.712 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 184 2.678 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 180 4.186 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 233 0.630 5.000 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 233 1.890 10.000 2 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 1.563 _refine_ls_shell.d_res_low 1.603 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.690 _refine_ls_shell.number_reflns_R_work 539 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 564 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A ALA 1 . A CYS 30 . A ALA 1 A CYS 30 6 ? 1 2 1 B ALA 1 . B CYS 30 . B ALA 1 B CYS 30 6 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3LO9 _struct.title 'Crystal structure of human alpha-defensin 1 (W26Ahp mutant)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LO9 _struct_keywords.text ;ANTIMICROBIAL PEPTIDE, HUMAN ALPHA DEFENSIN 1, HUMAN NEUTROPHIL PEPTIDE 1, HNP1, ANTIBIOTIC, ANTIMICROBIAL, Antiviral defense, Defensin, Disulfide bond, Fungicide, Phosphoprotein, Secreted, ANTIMICROBIAL PROTEIN ; _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is half of asymmetric unit.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 2 A CYS 30 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 4 A CYS 19 1_555 ? ? ? ? ? ? ? 2.008 ? ? disulf3 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 9 A CYS 29 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 30 SG ? ? B CYS 2 B CYS 30 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf5 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 19 SG ? ? B CYS 4 B CYS 19 1_555 ? ? ? ? ? ? ? 1.996 ? ? disulf6 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 29 SG ? ? B CYS 9 B CYS 29 1_555 ? ? ? ? ? ? ? 2.000 ? ? covale1 covale both ? A LEU 25 C ? ? ? 1_555 A AHP 26 N ? ? A LEU 25 A AHP 26 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale2 covale both ? A AHP 26 C ? ? ? 1_555 A ALA 27 N ? ? A AHP 26 A ALA 27 1_555 ? ? ? ? ? ? ? 1.396 ? ? covale3 covale both ? B LEU 25 C ? ? ? 1_555 B AHP 26 N ? ? B LEU 25 B AHP 26 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale4 covale both ? B AHP 26 C ? ? ? 1_555 B ALA 27 N ? ? B AHP 26 B ALA 27 1_555 ? ? ? ? ? ? ? 1.437 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 1 5.67 2 ILE 6 B . ? ILE 6 B PRO 7 B ? PRO 7 B 1 0.53 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 3 ? ARG A 5 ? TYR A 3 ARG A 5 A 2 ARG A 24 ? CYS A 30 ? ARG A 24 CYS A 30 A 3 ARG A 14 ? TYR A 21 ? ARG A 14 TYR A 21 A 4 ARG B 14 ? TYR B 21 ? ARG B 14 TYR B 21 A 5 ARG B 24 ? CYS B 30 ? ARG B 24 CYS B 30 A 6 TYR B 3 ? ARG B 5 ? TYR B 3 ARG B 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 3 ? N TYR A 3 O CYS A 29 ? O CYS A 29 A 2 3 O PHE A 28 ? O PHE A 28 N TYR A 16 ? N TYR A 16 A 3 4 N THR A 18 ? N THR A 18 O ILE B 20 ? O ILE B 20 A 4 5 N TYR B 16 ? N TYR B 16 O PHE B 28 ? O PHE B 28 A 5 6 O ALA B 27 ? O ALA B 27 N ARG B 5 ? N ARG B 5 # _atom_sites.entry_id 3LO9 _atom_sites.fract_transf_matrix[1][1] 0.021670 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032632 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025113 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 AHP 26 26 26 AHP AHP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 CYS 30 30 30 CYS CYS A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 TYR 3 3 3 TYR TYR B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 TYR 16 16 16 TYR TYR B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 AHP 26 26 26 AHP AHP B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 CYS 29 29 29 CYS CYS B . n B 1 30 CYS 30 30 30 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 31 2 HOH HOH A . C 2 HOH 2 32 6 HOH HOH A . C 2 HOH 3 33 33 HOH HOH A . C 2 HOH 4 34 7 HOH HOH A . C 2 HOH 5 35 8 HOH HOH A . C 2 HOH 6 36 36 HOH HOH A . C 2 HOH 7 37 37 HOH HOH A . C 2 HOH 8 38 9 HOH HOH A . C 2 HOH 9 39 10 HOH HOH A . C 2 HOH 10 40 40 HOH HOH A . C 2 HOH 11 41 19 HOH HOH A . C 2 HOH 12 42 20 HOH HOH A . C 2 HOH 13 43 24 HOH HOH A . C 2 HOH 14 44 25 HOH HOH A . C 2 HOH 15 45 27 HOH HOH A . C 2 HOH 16 46 46 HOH HOH A . C 2 HOH 17 47 47 HOH HOH A . C 2 HOH 18 48 48 HOH HOH A . C 2 HOH 19 49 49 HOH HOH A . C 2 HOH 20 50 50 HOH HOH A . C 2 HOH 21 53 53 HOH HOH A . C 2 HOH 22 54 54 HOH HOH A . C 2 HOH 23 62 62 HOH HOH A . C 2 HOH 24 63 63 HOH HOH A . D 2 HOH 1 31 31 HOH HOH B . D 2 HOH 2 32 32 HOH HOH B . D 2 HOH 3 33 1 HOH HOH B . D 2 HOH 4 34 34 HOH HOH B . D 2 HOH 5 35 35 HOH HOH B . D 2 HOH 6 36 3 HOH HOH B . D 2 HOH 7 37 4 HOH HOH B . D 2 HOH 8 38 38 HOH HOH B . D 2 HOH 9 39 39 HOH HOH B . D 2 HOH 10 40 5 HOH HOH B . D 2 HOH 11 41 41 HOH HOH B . D 2 HOH 12 42 42 HOH HOH B . D 2 HOH 13 43 43 HOH HOH B . D 2 HOH 14 44 44 HOH HOH B . D 2 HOH 15 45 45 HOH HOH B . D 2 HOH 16 46 11 HOH HOH B . D 2 HOH 17 47 12 HOH HOH B . D 2 HOH 18 48 13 HOH HOH B . D 2 HOH 19 49 14 HOH HOH B . D 2 HOH 20 50 15 HOH HOH B . D 2 HOH 21 51 51 HOH HOH B . D 2 HOH 22 52 52 HOH HOH B . D 2 HOH 23 53 16 HOH HOH B . D 2 HOH 24 54 17 HOH HOH B . D 2 HOH 25 55 55 HOH HOH B . D 2 HOH 26 56 56 HOH HOH B . D 2 HOH 27 57 57 HOH HOH B . D 2 HOH 28 58 58 HOH HOH B . D 2 HOH 29 59 59 HOH HOH B . D 2 HOH 30 60 60 HOH HOH B . D 2 HOH 31 61 61 HOH HOH B . D 2 HOH 32 62 18 HOH HOH B . D 2 HOH 33 63 21 HOH HOH B . D 2 HOH 34 64 64 HOH HOH B . D 2 HOH 35 65 22 HOH HOH B . D 2 HOH 36 66 23 HOH HOH B . D 2 HOH 37 67 29 HOH HOH B . D 2 HOH 38 68 30 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A AHP 26 A AHP 26 ? ALA '2-AMINO-HEPTANOIC ACID' 2 B AHP 26 B AHP 26 ? ALA '2-AMINO-HEPTANOIC ACID' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D 3 1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 810 ? 3 MORE -8 ? 3 'SSA (A^2)' 4150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-13 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 6 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 8 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 9 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 10 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 11 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 12 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -14.5933 8.3887 -14.1050 0.1093 0.1579 0.1801 0.0124 0.0000 -0.0248 1.6775 4.3481 2.9424 -1.2056 -0.0067 -0.1719 -0.0489 -0.0413 0.0902 0.1247 -0.1798 0.5889 -0.0397 -0.1202 -0.3772 'X-RAY DIFFRACTION' 2 ? refined -11.0618 -1.2368 -5.8357 0.0792 0.0889 0.0660 0.0129 0.0129 0.0236 5.3625 3.9050 3.3288 1.7985 -0.3805 0.9288 -0.0711 0.1052 -0.0341 -0.1111 0.1830 0.2579 0.1488 -0.0457 -0.1407 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 30 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 30 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0070 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AHP N N N N 1 AHP CA C N S 2 AHP C C N N 3 AHP O O N N 4 AHP OXT O N N 5 AHP CB C N N 6 AHP CG C N N 7 AHP CD C N N 8 AHP CE C N N 9 AHP CZ C N N 10 AHP H H N N 11 AHP H2 H N N 12 AHP HA H N N 13 AHP HXT H N N 14 AHP HB2 H N N 15 AHP HB3 H N N 16 AHP HG2 H N N 17 AHP HG3 H N N 18 AHP HD2 H N N 19 AHP HD3 H N N 20 AHP HE2 H N N 21 AHP HE3 H N N 22 AHP HZ1 H N N 23 AHP HZ2 H N N 24 AHP HZ3 H N N 25 ALA N N N N 26 ALA CA C N S 27 ALA C C N N 28 ALA O O N N 29 ALA CB C N N 30 ALA OXT O N N 31 ALA H H N N 32 ALA H2 H N N 33 ALA HA H N N 34 ALA HB1 H N N 35 ALA HB2 H N N 36 ALA HB3 H N N 37 ALA HXT H N N 38 ARG N N N N 39 ARG CA C N S 40 ARG C C N N 41 ARG O O N N 42 ARG CB C N N 43 ARG CG C N N 44 ARG CD C N N 45 ARG NE N N N 46 ARG CZ C N N 47 ARG NH1 N N N 48 ARG NH2 N N N 49 ARG OXT O N N 50 ARG H H N N 51 ARG H2 H N N 52 ARG HA H N N 53 ARG HB2 H N N 54 ARG HB3 H N N 55 ARG HG2 H N N 56 ARG HG3 H N N 57 ARG HD2 H N N 58 ARG HD3 H N N 59 ARG HE H N N 60 ARG HH11 H N N 61 ARG HH12 H N N 62 ARG HH21 H N N 63 ARG HH22 H N N 64 ARG HXT H N N 65 CYS N N N N 66 CYS CA C N R 67 CYS C C N N 68 CYS O O N N 69 CYS CB C N N 70 CYS SG S N N 71 CYS OXT O N N 72 CYS H H N N 73 CYS H2 H N N 74 CYS HA H N N 75 CYS HB2 H N N 76 CYS HB3 H N N 77 CYS HG H N N 78 CYS HXT H N N 79 GLN N N N N 80 GLN CA C N S 81 GLN C C N N 82 GLN O O N N 83 GLN CB C N N 84 GLN CG C N N 85 GLN CD C N N 86 GLN OE1 O N N 87 GLN NE2 N N N 88 GLN OXT O N N 89 GLN H H N N 90 GLN H2 H N N 91 GLN HA H N N 92 GLN HB2 H N N 93 GLN HB3 H N N 94 GLN HG2 H N N 95 GLN HG3 H N N 96 GLN HE21 H N N 97 GLN HE22 H N N 98 GLN HXT H N N 99 GLU N N N N 100 GLU CA C N S 101 GLU C C N N 102 GLU O O N N 103 GLU CB C N N 104 GLU CG C N N 105 GLU CD C N N 106 GLU OE1 O N N 107 GLU OE2 O N N 108 GLU OXT O N N 109 GLU H H N N 110 GLU H2 H N N 111 GLU HA H N N 112 GLU HB2 H N N 113 GLU HB3 H N N 114 GLU HG2 H N N 115 GLU HG3 H N N 116 GLU HE2 H N N 117 GLU HXT H N N 118 GLY N N N N 119 GLY CA C N N 120 GLY C C N N 121 GLY O O N N 122 GLY OXT O N N 123 GLY H H N N 124 GLY H2 H N N 125 GLY HA2 H N N 126 GLY HA3 H N N 127 GLY HXT H N N 128 HOH O O N N 129 HOH H1 H N N 130 HOH H2 H N N 131 ILE N N N N 132 ILE CA C N S 133 ILE C C N N 134 ILE O O N N 135 ILE CB C N S 136 ILE CG1 C N N 137 ILE CG2 C N N 138 ILE CD1 C N N 139 ILE OXT O N N 140 ILE H H N N 141 ILE H2 H N N 142 ILE HA H N N 143 ILE HB H N N 144 ILE HG12 H N N 145 ILE HG13 H N N 146 ILE HG21 H N N 147 ILE HG22 H N N 148 ILE HG23 H N N 149 ILE HD11 H N N 150 ILE HD12 H N N 151 ILE HD13 H N N 152 ILE HXT H N N 153 LEU N N N N 154 LEU CA C N S 155 LEU C C N N 156 LEU O O N N 157 LEU CB C N N 158 LEU CG C N N 159 LEU CD1 C N N 160 LEU CD2 C N N 161 LEU OXT O N N 162 LEU H H N N 163 LEU H2 H N N 164 LEU HA H N N 165 LEU HB2 H N N 166 LEU HB3 H N N 167 LEU HG H N N 168 LEU HD11 H N N 169 LEU HD12 H N N 170 LEU HD13 H N N 171 LEU HD21 H N N 172 LEU HD22 H N N 173 LEU HD23 H N N 174 LEU HXT H N N 175 PHE N N N N 176 PHE CA C N S 177 PHE C C N N 178 PHE O O N N 179 PHE CB C N N 180 PHE CG C Y N 181 PHE CD1 C Y N 182 PHE CD2 C Y N 183 PHE CE1 C Y N 184 PHE CE2 C Y N 185 PHE CZ C Y N 186 PHE OXT O N N 187 PHE H H N N 188 PHE H2 H N N 189 PHE HA H N N 190 PHE HB2 H N N 191 PHE HB3 H N N 192 PHE HD1 H N N 193 PHE HD2 H N N 194 PHE HE1 H N N 195 PHE HE2 H N N 196 PHE HZ H N N 197 PHE HXT H N N 198 PRO N N N N 199 PRO CA C N S 200 PRO C C N N 201 PRO O O N N 202 PRO CB C N N 203 PRO CG C N N 204 PRO CD C N N 205 PRO OXT O N N 206 PRO H H N N 207 PRO HA H N N 208 PRO HB2 H N N 209 PRO HB3 H N N 210 PRO HG2 H N N 211 PRO HG3 H N N 212 PRO HD2 H N N 213 PRO HD3 H N N 214 PRO HXT H N N 215 THR N N N N 216 THR CA C N S 217 THR C C N N 218 THR O O N N 219 THR CB C N R 220 THR OG1 O N N 221 THR CG2 C N N 222 THR OXT O N N 223 THR H H N N 224 THR H2 H N N 225 THR HA H N N 226 THR HB H N N 227 THR HG1 H N N 228 THR HG21 H N N 229 THR HG22 H N N 230 THR HG23 H N N 231 THR HXT H N N 232 TRP N N N N 233 TRP CA C N S 234 TRP C C N N 235 TRP O O N N 236 TRP CB C N N 237 TRP CG C Y N 238 TRP CD1 C Y N 239 TRP CD2 C Y N 240 TRP NE1 N Y N 241 TRP CE2 C Y N 242 TRP CE3 C Y N 243 TRP CZ2 C Y N 244 TRP CZ3 C Y N 245 TRP CH2 C Y N 246 TRP OXT O N N 247 TRP H H N N 248 TRP H2 H N N 249 TRP HA H N N 250 TRP HB2 H N N 251 TRP HB3 H N N 252 TRP HD1 H N N 253 TRP HE1 H N N 254 TRP HE3 H N N 255 TRP HZ2 H N N 256 TRP HZ3 H N N 257 TRP HH2 H N N 258 TRP HXT H N N 259 TYR N N N N 260 TYR CA C N S 261 TYR C C N N 262 TYR O O N N 263 TYR CB C N N 264 TYR CG C Y N 265 TYR CD1 C Y N 266 TYR CD2 C Y N 267 TYR CE1 C Y N 268 TYR CE2 C Y N 269 TYR CZ C Y N 270 TYR OH O N N 271 TYR OXT O N N 272 TYR H H N N 273 TYR H2 H N N 274 TYR HA H N N 275 TYR HB2 H N N 276 TYR HB3 H N N 277 TYR HD1 H N N 278 TYR HD2 H N N 279 TYR HE1 H N N 280 TYR HE2 H N N 281 TYR HH H N N 282 TYR HXT H N N 283 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AHP N CA sing N N 1 AHP N H sing N N 2 AHP N H2 sing N N 3 AHP CA C sing N N 4 AHP CA CB sing N N 5 AHP CA HA sing N N 6 AHP C O doub N N 7 AHP C OXT sing N N 8 AHP OXT HXT sing N N 9 AHP CB CG sing N N 10 AHP CB HB2 sing N N 11 AHP CB HB3 sing N N 12 AHP CG CD sing N N 13 AHP CG HG2 sing N N 14 AHP CG HG3 sing N N 15 AHP CD CE sing N N 16 AHP CD HD2 sing N N 17 AHP CD HD3 sing N N 18 AHP CE CZ sing N N 19 AHP CE HE2 sing N N 20 AHP CE HE3 sing N N 21 AHP CZ HZ1 sing N N 22 AHP CZ HZ2 sing N N 23 AHP CZ HZ3 sing N N 24 ALA N CA sing N N 25 ALA N H sing N N 26 ALA N H2 sing N N 27 ALA CA C sing N N 28 ALA CA CB sing N N 29 ALA CA HA sing N N 30 ALA C O doub N N 31 ALA C OXT sing N N 32 ALA CB HB1 sing N N 33 ALA CB HB2 sing N N 34 ALA CB HB3 sing N N 35 ALA OXT HXT sing N N 36 ARG N CA sing N N 37 ARG N H sing N N 38 ARG N H2 sing N N 39 ARG CA C sing N N 40 ARG CA CB sing N N 41 ARG CA HA sing N N 42 ARG C O doub N N 43 ARG C OXT sing N N 44 ARG CB CG sing N N 45 ARG CB HB2 sing N N 46 ARG CB HB3 sing N N 47 ARG CG CD sing N N 48 ARG CG HG2 sing N N 49 ARG CG HG3 sing N N 50 ARG CD NE sing N N 51 ARG CD HD2 sing N N 52 ARG CD HD3 sing N N 53 ARG NE CZ sing N N 54 ARG NE HE sing N N 55 ARG CZ NH1 sing N N 56 ARG CZ NH2 doub N N 57 ARG NH1 HH11 sing N N 58 ARG NH1 HH12 sing N N 59 ARG NH2 HH21 sing N N 60 ARG NH2 HH22 sing N N 61 ARG OXT HXT sing N N 62 CYS N CA sing N N 63 CYS N H sing N N 64 CYS N H2 sing N N 65 CYS CA C sing N N 66 CYS CA CB sing N N 67 CYS CA HA sing N N 68 CYS C O doub N N 69 CYS C OXT sing N N 70 CYS CB SG sing N N 71 CYS CB HB2 sing N N 72 CYS CB HB3 sing N N 73 CYS SG HG sing N N 74 CYS OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 ILE N CA sing N N 124 ILE N H sing N N 125 ILE N H2 sing N N 126 ILE CA C sing N N 127 ILE CA CB sing N N 128 ILE CA HA sing N N 129 ILE C O doub N N 130 ILE C OXT sing N N 131 ILE CB CG1 sing N N 132 ILE CB CG2 sing N N 133 ILE CB HB sing N N 134 ILE CG1 CD1 sing N N 135 ILE CG1 HG12 sing N N 136 ILE CG1 HG13 sing N N 137 ILE CG2 HG21 sing N N 138 ILE CG2 HG22 sing N N 139 ILE CG2 HG23 sing N N 140 ILE CD1 HD11 sing N N 141 ILE CD1 HD12 sing N N 142 ILE CD1 HD13 sing N N 143 ILE OXT HXT sing N N 144 LEU N CA sing N N 145 LEU N H sing N N 146 LEU N H2 sing N N 147 LEU CA C sing N N 148 LEU CA CB sing N N 149 LEU CA HA sing N N 150 LEU C O doub N N 151 LEU C OXT sing N N 152 LEU CB CG sing N N 153 LEU CB HB2 sing N N 154 LEU CB HB3 sing N N 155 LEU CG CD1 sing N N 156 LEU CG CD2 sing N N 157 LEU CG HG sing N N 158 LEU CD1 HD11 sing N N 159 LEU CD1 HD12 sing N N 160 LEU CD1 HD13 sing N N 161 LEU CD2 HD21 sing N N 162 LEU CD2 HD22 sing N N 163 LEU CD2 HD23 sing N N 164 LEU OXT HXT sing N N 165 PHE N CA sing N N 166 PHE N H sing N N 167 PHE N H2 sing N N 168 PHE CA C sing N N 169 PHE CA CB sing N N 170 PHE CA HA sing N N 171 PHE C O doub N N 172 PHE C OXT sing N N 173 PHE CB CG sing N N 174 PHE CB HB2 sing N N 175 PHE CB HB3 sing N N 176 PHE CG CD1 doub Y N 177 PHE CG CD2 sing Y N 178 PHE CD1 CE1 sing Y N 179 PHE CD1 HD1 sing N N 180 PHE CD2 CE2 doub Y N 181 PHE CD2 HD2 sing N N 182 PHE CE1 CZ doub Y N 183 PHE CE1 HE1 sing N N 184 PHE CE2 CZ sing Y N 185 PHE CE2 HE2 sing N N 186 PHE CZ HZ sing N N 187 PHE OXT HXT sing N N 188 PRO N CA sing N N 189 PRO N CD sing N N 190 PRO N H sing N N 191 PRO CA C sing N N 192 PRO CA CB sing N N 193 PRO CA HA sing N N 194 PRO C O doub N N 195 PRO C OXT sing N N 196 PRO CB CG sing N N 197 PRO CB HB2 sing N N 198 PRO CB HB3 sing N N 199 PRO CG CD sing N N 200 PRO CG HG2 sing N N 201 PRO CG HG3 sing N N 202 PRO CD HD2 sing N N 203 PRO CD HD3 sing N N 204 PRO OXT HXT sing N N 205 THR N CA sing N N 206 THR N H sing N N 207 THR N H2 sing N N 208 THR CA C sing N N 209 THR CA CB sing N N 210 THR CA HA sing N N 211 THR C O doub N N 212 THR C OXT sing N N 213 THR CB OG1 sing N N 214 THR CB CG2 sing N N 215 THR CB HB sing N N 216 THR OG1 HG1 sing N N 217 THR CG2 HG21 sing N N 218 THR CG2 HG22 sing N N 219 THR CG2 HG23 sing N N 220 THR OXT HXT sing N N 221 TRP N CA sing N N 222 TRP N H sing N N 223 TRP N H2 sing N N 224 TRP CA C sing N N 225 TRP CA CB sing N N 226 TRP CA HA sing N N 227 TRP C O doub N N 228 TRP C OXT sing N N 229 TRP CB CG sing N N 230 TRP CB HB2 sing N N 231 TRP CB HB3 sing N N 232 TRP CG CD1 doub Y N 233 TRP CG CD2 sing Y N 234 TRP CD1 NE1 sing Y N 235 TRP CD1 HD1 sing N N 236 TRP CD2 CE2 doub Y N 237 TRP CD2 CE3 sing Y N 238 TRP NE1 CE2 sing Y N 239 TRP NE1 HE1 sing N N 240 TRP CE2 CZ2 sing Y N 241 TRP CE3 CZ3 doub Y N 242 TRP CE3 HE3 sing N N 243 TRP CZ2 CH2 doub Y N 244 TRP CZ2 HZ2 sing N N 245 TRP CZ3 CH2 sing Y N 246 TRP CZ3 HZ3 sing N N 247 TRP CH2 HH2 sing N N 248 TRP OXT HXT sing N N 249 TYR N CA sing N N 250 TYR N H sing N N 251 TYR N H2 sing N N 252 TYR CA C sing N N 253 TYR CA CB sing N N 254 TYR CA HA sing N N 255 TYR C O doub N N 256 TYR C OXT sing N N 257 TYR CB CG sing N N 258 TYR CB HB2 sing N N 259 TYR CB HB3 sing N N 260 TYR CG CD1 doub Y N 261 TYR CG CD2 sing Y N 262 TYR CD1 CE1 sing Y N 263 TYR CD1 HD1 sing N N 264 TYR CD2 CE2 doub Y N 265 TYR CD2 HD2 sing N N 266 TYR CE1 CZ doub Y N 267 TYR CE1 HE1 sing N N 268 TYR CE2 CZ sing Y N 269 TYR CE2 HE2 sing N N 270 TYR CZ OH sing N N 271 TYR OH HH sing N N 272 TYR OXT HXT sing N N 273 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GNY _pdbx_initial_refinement_model.details 'PDB ENTRY 3GNY' #