data_3LOW # _entry.id 3LOW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LOW RCSB RCSB057546 WWPDB D_1000057546 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3LOZ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3LOW _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, C.' 1 'Eisenberg, D.' 2 # _citation.id primary _citation.title 'Beta2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 49 _citation.page_last 55 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21131979 _citation.pdbx_database_id_DOI 10.1038/nsmb.1948 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, C.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Eisenberg, D.' 3 ? # _cell.length_a 59.721 _cell.length_b 29.162 _cell.length_c 67.715 _cell.angle_alpha 90.000 _cell.angle_beta 97.490 _cell.angle_gamma 90.000 _cell.entry_id 3LOW _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3LOW _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-2-microglobulin 11879.356 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Beta-2-microglobulin form pI 5.3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; _entity_poly.pdbx_seq_one_letter_code_can ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 GLN n 1 4 ARG n 1 5 THR n 1 6 PRO n 1 7 LYS n 1 8 ILE n 1 9 GLN n 1 10 VAL n 1 11 TYR n 1 12 SER n 1 13 ARG n 1 14 HIS n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 ASN n 1 19 GLY n 1 20 LYS n 1 21 SER n 1 22 ASN n 1 23 PHE n 1 24 LEU n 1 25 ASN n 1 26 CYS n 1 27 TYR n 1 28 VAL n 1 29 SER n 1 30 GLY n 1 31 PHE n 1 32 HIS n 1 33 PRO n 1 34 SER n 1 35 ASP n 1 36 ILE n 1 37 GLU n 1 38 VAL n 1 39 ASP n 1 40 LEU n 1 41 LEU n 1 42 LYS n 1 43 ASN n 1 44 GLY n 1 45 GLU n 1 46 ARG n 1 47 ILE n 1 48 GLU n 1 49 LYS n 1 50 VAL n 1 51 GLU n 1 52 HIS n 1 53 SER n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 PHE n 1 58 SER n 1 59 LYS n 1 60 ASP n 1 61 TRP n 1 62 SER n 1 63 PHE n 1 64 TYR n 1 65 LEU n 1 66 LEU n 1 67 TYR n 1 68 TYR n 1 69 THR n 1 70 GLU n 1 71 PHE n 1 72 THR n 1 73 PRO n 1 74 THR n 1 75 GLU n 1 76 LYS n 1 77 ASP n 1 78 GLU n 1 79 TYR n 1 80 ALA n 1 81 CYS n 1 82 ARG n 1 83 VAL n 1 84 ASN n 1 85 HIS n 1 86 VAL n 1 87 THR n 1 88 LEU n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 LYS n 1 93 ILE n 1 94 VAL n 1 95 LYS n 1 96 TRP n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B2M, CDABP0092, HDCMA22P' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B2MG_HUMAN _struct_ref.pdbx_db_accession P61769 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC RVNHVTLSQPKIVKWDRDM ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LOW A 2 ? 100 ? P61769 21 ? 119 ? 1 99 2 1 3LOW B 2 ? 100 ? P61769 21 ? 119 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LOW MET A 1 ? UNP P61769 ? ? 'INITIATING METHIONINE' 0 1 2 3LOW MET B 1 ? UNP P61769 ? ? 'INITIATING METHIONINE' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LOW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97166 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 0.97166 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3LOW _reflns.d_resolution_high 2.190 _reflns.d_resolution_low 67.140 _reflns.number_obs 12176 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_netI_over_sigmaI 18.300 _reflns.pdbx_chi_squared 1.142 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 99.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.19 2.23 ? ? ? 0.205 ? ? 1.214 3.40 ? 635 99.10 1 1 2.23 2.27 ? ? ? 0.226 ? ? 1.711 3.60 ? 572 99.70 2 1 2.27 2.31 ? ? ? 0.196 ? ? 1.036 3.60 ? 609 100.00 3 1 2.31 2.36 ? ? ? 0.190 ? ? 1.181 3.70 ? 595 99.70 4 1 2.36 2.41 ? ? ? 0.137 ? ? 1.202 3.60 ? 613 100.00 5 1 2.41 2.47 ? ? ? 0.138 ? ? 1.244 3.70 ? 606 100.00 6 1 2.47 2.53 ? ? ? 0.127 ? ? 1.284 3.70 ? 583 100.00 7 1 2.53 2.60 ? ? ? 0.108 ? ? 0.969 3.70 ? 619 100.00 8 1 2.60 2.67 ? ? ? 0.109 ? ? 1.083 3.70 ? 601 100.00 9 1 2.67 2.76 ? ? ? 0.087 ? ? 1.008 3.70 ? 606 100.00 10 1 2.76 2.86 ? ? ? 0.076 ? ? 1.151 3.70 ? 620 100.00 11 1 2.86 2.97 ? ? ? 0.069 ? ? 1.146 3.70 ? 601 100.00 12 1 2.97 3.11 ? ? ? 0.062 ? ? 1.145 3.60 ? 603 100.00 13 1 3.11 3.27 ? ? ? 0.054 ? ? 1.137 3.70 ? 612 100.00 14 1 3.27 3.48 ? ? ? 0.052 ? ? 1.157 3.60 ? 611 99.70 15 1 3.48 3.74 ? ? ? 0.045 ? ? 1.036 3.60 ? 608 98.70 16 1 3.74 4.12 ? ? ? 0.058 ? ? 0.961 3.50 ? 615 98.20 17 1 4.12 4.72 ? ? ? 0.056 ? ? 0.986 3.40 ? 610 97.40 18 1 4.72 5.94 ? ? ? 0.044 ? ? 1.060 3.40 ? 610 96.50 19 1 5.94 50.00 ? ? ? 0.038 ? ? 1.149 3.30 ? 647 97.40 20 1 # _refine.entry_id 3LOW _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.230 _refine.ls_number_reflns_obs 10581 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_R_work 0.219 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.266 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 516 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.794 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] -3.390 _refine.aniso_B[3][3] 3.240 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.560 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.357 _refine.pdbx_overall_ESU_R_Free 0.253 _refine.overall_SU_ML 0.177 _refine.overall_SU_B 15.449 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 80.81 _refine.B_iso_min 10.54 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1604 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1667 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1127 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2261 1.595 1.945 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2739 0.903 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 196 7.315 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 79 35.963 23.797 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 270 20.163 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 22.994 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 240 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1829 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 347 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 994 0.915 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 390 0.159 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1612 1.750 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 673 2.363 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 649 3.832 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.740 _refine_ls_shell.number_reflns_R_work 717 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 768 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LOW _struct.title 'Crystal structure of Beta 2 Microglobulin domain-swapped dimer' _struct.pdbx_descriptor Beta-2-microglobulin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LOW _struct_keywords.text 'domain-swap, beta sheet hinge region, Amyloidosis, Inter-molecular disulfide bond, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 B CYS 81 SG ? ? A CYS 25 B CYS 80 1_555 ? ? ? ? ? ? ? 1.992 ? disulf2 disulf ? ? A CYS 81 SG ? ? ? 1_555 B CYS 26 SG ? ? A CYS 80 B CYS 25 1_555 ? ? ? ? ? ? ? 2.009 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 32 A . ? HIS 31 A PRO 33 A ? PRO 32 A 1 3.58 2 HIS 32 B . ? HIS 31 B PRO 33 B ? PRO 32 B 1 0.63 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 7 ? SER A 12 ? LYS A 6 SER A 11 A 2 ASN A 22 ? PHE A 31 ? ASN A 21 PHE A 30 A 3 HIS B 52 ? PHE B 71 ? HIS B 51 PHE B 70 A 4 HIS A 52 ? PHE A 71 ? HIS A 51 PHE A 70 A 5 ASN B 22 ? PHE B 31 ? ASN B 21 PHE B 30 A 6 LYS B 7 ? SER B 12 ? LYS B 6 SER B 11 B 1 GLU A 45 ? ILE A 47 ? GLU A 44 ILE A 46 B 2 GLU A 37 ? LYS A 42 ? GLU A 36 LYS A 41 B 3 TYR B 79 ? ASN B 84 ? TYR B 78 ASN B 83 B 4 LYS B 92 ? LYS B 95 ? LYS B 91 LYS B 94 C 1 LYS A 92 ? LYS A 95 ? LYS A 91 LYS A 94 C 2 TYR A 79 ? ASN A 84 ? TYR A 78 ASN A 83 C 3 GLU B 37 ? LYS B 42 ? GLU B 36 LYS B 41 C 4 GLU B 45 ? ARG B 46 ? GLU B 44 ARG B 45 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 9 ? N GLN A 8 O TYR A 27 ? O TYR A 26 A 2 3 N LEU A 24 ? N LEU A 23 O THR B 69 ? O THR B 68 A 3 4 O ASP B 54 ? O ASP B 53 N LEU A 66 ? N LEU A 65 A 4 5 N LEU A 65 ? N LEU A 64 O VAL B 28 ? O VAL B 27 A 5 6 O TYR B 27 ? O TYR B 26 N GLN B 9 ? N GLN B 8 B 1 2 O GLU A 45 ? O GLU A 44 N LYS A 42 ? N LYS A 41 B 2 3 N ASP A 39 ? N ASP A 38 O ARG B 82 ? O ARG B 81 B 3 4 N CYS B 81 ? N CYS B 80 O VAL B 94 ? O VAL B 93 C 1 2 O VAL A 94 ? O VAL A 93 N CYS A 81 ? N CYS A 80 C 2 3 N ALA A 80 ? N ALA A 79 O LEU B 41 ? O LEU B 40 C 3 4 N LYS B 42 ? N LYS B 41 O GLU B 45 ? O GLU B 44 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE GOL A 3968' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL B 3968' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ASN A 84 ? ASN A 83 . ? 1_555 ? 2 AC2 2 ASN B 84 ? ASN B 83 . ? 1_555 ? 3 AC2 2 HIS B 85 ? HIS B 84 . ? 1_555 ? 4 AC3 5 LYS A 42 ? LYS A 41 . ? 1_445 ? 5 AC3 5 GLU A 45 ? GLU A 44 . ? 1_445 ? 6 AC3 5 ARG A 46 ? ARG A 45 . ? 1_445 ? 7 AC3 5 GLU B 45 ? GLU B 44 . ? 1_555 ? 8 AC3 5 ARG B 46 ? ARG B 45 . ? 1_555 ? # _atom_sites.entry_id 3LOW _atom_sites.fract_transf_matrix[1][1] 0.016745 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002202 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014895 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ILE 2 1 1 ILE ILE A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 HIS 14 13 13 HIS HIS A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLU 17 16 16 GLU ALA A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 CYS 26 25 25 CYS CYS A . n A 1 27 TYR 27 26 26 TYR TYR A . n A 1 28 VAL 28 27 27 VAL VAL A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 TRP 61 60 60 TRP TRP A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 TYR 64 63 63 TYR TYR A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 TYR 67 66 66 TYR TYR A . n A 1 68 TYR 68 67 67 TYR TYR A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLN 90 89 89 GLN GLN A . n A 1 91 PRO 91 90 90 PRO PRO A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 TRP 96 95 95 TRP TRP A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 MET 100 99 99 MET MET A . n B 1 1 MET 1 0 0 MET MET B . n B 1 2 ILE 2 1 1 ILE ILE B . n B 1 3 GLN 3 2 2 GLN GLN B . n B 1 4 ARG 4 3 3 ARG ARG B . n B 1 5 THR 5 4 4 THR THR B . n B 1 6 PRO 6 5 5 PRO PRO B . n B 1 7 LYS 7 6 6 LYS LYS B . n B 1 8 ILE 8 7 7 ILE ILE B . n B 1 9 GLN 9 8 8 GLN GLN B . n B 1 10 VAL 10 9 9 VAL VAL B . n B 1 11 TYR 11 10 10 TYR TYR B . n B 1 12 SER 12 11 11 SER SER B . n B 1 13 ARG 13 12 12 ARG ARG B . n B 1 14 HIS 14 13 13 HIS HIS B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 ALA 16 15 15 ALA ALA B . n B 1 17 GLU 17 16 16 GLU ALA B . n B 1 18 ASN 18 17 17 ASN ASN B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 LYS 20 19 19 LYS ALA B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 PHE 23 22 22 PHE PHE B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 ASN 25 24 24 ASN ASN B . n B 1 26 CYS 26 25 25 CYS CYS B . n B 1 27 TYR 27 26 26 TYR TYR B . n B 1 28 VAL 28 27 27 VAL VAL B . n B 1 29 SER 29 28 28 SER SER B . n B 1 30 GLY 30 29 29 GLY GLY B . n B 1 31 PHE 31 30 30 PHE PHE B . n B 1 32 HIS 32 31 31 HIS HIS B . n B 1 33 PRO 33 32 32 PRO PRO B . n B 1 34 SER 34 33 33 SER SER B . n B 1 35 ASP 35 34 34 ASP ASP B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 GLU 37 36 36 GLU GLU B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 ASP 39 38 38 ASP ASP B . n B 1 40 LEU 40 39 39 LEU LEU B . n B 1 41 LEU 41 40 40 LEU LEU B . n B 1 42 LYS 42 41 41 LYS LYS B . n B 1 43 ASN 43 42 42 ASN ASN B . n B 1 44 GLY 44 43 43 GLY GLY B . n B 1 45 GLU 45 44 44 GLU GLU B . n B 1 46 ARG 46 45 45 ARG ARG B . n B 1 47 ILE 47 46 46 ILE ILE B . n B 1 48 GLU 48 47 47 GLU GLU B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 VAL 50 49 49 VAL VAL B . n B 1 51 GLU 51 50 50 GLU GLU B . n B 1 52 HIS 52 51 51 HIS HIS B . n B 1 53 SER 53 52 52 SER SER B . n B 1 54 ASP 54 53 53 ASP ASP B . n B 1 55 LEU 55 54 54 LEU LEU B . n B 1 56 SER 56 55 55 SER SER B . n B 1 57 PHE 57 56 56 PHE PHE B . n B 1 58 SER 58 57 57 SER SER B . n B 1 59 LYS 59 58 58 LYS LYS B . n B 1 60 ASP 60 59 59 ASP ASP B . n B 1 61 TRP 61 60 60 TRP TRP B . n B 1 62 SER 62 61 61 SER SER B . n B 1 63 PHE 63 62 62 PHE PHE B . n B 1 64 TYR 64 63 63 TYR TYR B . n B 1 65 LEU 65 64 64 LEU LEU B . n B 1 66 LEU 66 65 65 LEU LEU B . n B 1 67 TYR 67 66 66 TYR TYR B . n B 1 68 TYR 68 67 67 TYR TYR B . n B 1 69 THR 69 68 68 THR THR B . n B 1 70 GLU 70 69 69 GLU GLU B . n B 1 71 PHE 71 70 70 PHE PHE B . n B 1 72 THR 72 71 71 THR THR B . n B 1 73 PRO 73 72 72 PRO PRO B . n B 1 74 THR 74 73 73 THR THR B . n B 1 75 GLU 75 74 74 GLU GLU B . n B 1 76 LYS 76 75 75 LYS LYS B . n B 1 77 ASP 77 76 76 ASP ASP B . n B 1 78 GLU 78 77 77 GLU GLU B . n B 1 79 TYR 79 78 78 TYR TYR B . n B 1 80 ALA 80 79 79 ALA ALA B . n B 1 81 CYS 81 80 80 CYS CYS B . n B 1 82 ARG 82 81 81 ARG ARG B . n B 1 83 VAL 83 82 82 VAL VAL B . n B 1 84 ASN 84 83 83 ASN ASN B . n B 1 85 HIS 85 84 84 HIS HIS B . n B 1 86 VAL 86 85 85 VAL VAL B . n B 1 87 THR 87 86 86 THR THR B . n B 1 88 LEU 88 87 87 LEU LEU B . n B 1 89 SER 89 88 88 SER SER B . n B 1 90 GLN 90 89 89 GLN GLN B . n B 1 91 PRO 91 90 90 PRO PRO B . n B 1 92 LYS 92 91 91 LYS LYS B . n B 1 93 ILE 93 92 92 ILE ILE B . n B 1 94 VAL 94 93 93 VAL VAL B . n B 1 95 LYS 95 94 94 LYS LYS B . n B 1 96 TRP 96 95 95 TRP TRP B . n B 1 97 ASP 97 96 96 ASP ASP B . n B 1 98 ARG 98 97 97 ARG ARG B . n B 1 99 ASP 99 98 ? ? ? B . n B 1 100 MET 100 99 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 3968 3968 GOL GOL A . D 2 GOL 1 3968 3968 GOL GOL B . E 2 GOL 1 100 3968 GOL GOL B . F 3 HOH 1 100 4 HOH HOH A . F 3 HOH 2 101 9 HOH HOH A . F 3 HOH 3 102 10 HOH HOH A . F 3 HOH 4 103 11 HOH HOH A . F 3 HOH 5 104 13 HOH HOH A . F 3 HOH 6 105 15 HOH HOH A . F 3 HOH 7 106 16 HOH HOH A . F 3 HOH 8 107 18 HOH HOH A . F 3 HOH 9 108 20 HOH HOH A . F 3 HOH 10 109 23 HOH HOH A . F 3 HOH 11 110 32 HOH HOH A . F 3 HOH 12 111 40 HOH HOH A . F 3 HOH 13 112 41 HOH HOH A . F 3 HOH 14 113 42 HOH HOH A . F 3 HOH 15 114 43 HOH HOH A . F 3 HOH 16 115 44 HOH HOH A . F 3 HOH 17 116 47 HOH HOH A . G 3 HOH 1 101 2 HOH HOH B . G 3 HOH 2 102 3 HOH HOH B . G 3 HOH 3 103 6 HOH HOH B . G 3 HOH 4 104 12 HOH HOH B . G 3 HOH 5 105 22 HOH HOH B . G 3 HOH 6 106 24 HOH HOH B . G 3 HOH 7 107 27 HOH HOH B . G 3 HOH 8 108 30 HOH HOH B . G 3 HOH 9 109 34 HOH HOH B . G 3 HOH 10 110 35 HOH HOH B . G 3 HOH 11 111 36 HOH HOH B . G 3 HOH 12 112 37 HOH HOH B . G 3 HOH 13 113 38 HOH HOH B . G 3 HOH 14 114 39 HOH HOH B . G 3 HOH 15 115 45 HOH HOH B . G 3 HOH 16 116 46 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9510 ? 1 MORE -56 ? 1 'SSA (A^2)' 12530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-09-19 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.contact_author' 3 5 'Structure model' '_software.contact_author_email' 4 5 'Structure model' '_software.language' 5 5 'Structure model' '_software.location' 6 5 'Structure model' '_software.name' 7 5 'Structure model' '_software.type' 8 5 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 11.2843 -18.6083 19.3038 0.1766 0.1478 0.0574 -0.0823 -0.0222 0.0340 2.6739 0.8557 0.3185 0.7662 0.1307 0.0625 -0.2897 0.2516 0.0380 0.6011 0.1934 0.0427 -0.2326 -0.0853 0.0287 'X-RAY DIFFRACTION' 2 ? refined 9.4564 -23.2926 19.1224 0.1846 0.1362 0.0460 -0.0929 0.0146 -0.0267 2.9835 0.9251 0.3912 0.8646 -0.1683 -0.0520 -0.3225 0.2728 0.0497 0.5950 -0.1782 0.0249 -0.2667 0.0783 -0.0390 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 97 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 0 B 97 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CNS . ? ? ? ? phasing ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 111 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 115 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 17 ? ? -33.51 118.25 2 1 SER A 52 ? ? -157.91 85.52 3 1 TRP A 60 ? ? -161.42 83.13 4 1 TRP B 60 ? ? -168.21 82.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 6 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 6 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 6 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 6 ? NZ ? A LYS 7 NZ 5 1 Y 1 A ARG 12 ? CG ? A ARG 13 CG 6 1 Y 1 A ARG 12 ? CD ? A ARG 13 CD 7 1 Y 1 A ARG 12 ? NE ? A ARG 13 NE 8 1 Y 1 A ARG 12 ? CZ ? A ARG 13 CZ 9 1 Y 1 A ARG 12 ? NH1 ? A ARG 13 NH1 10 1 Y 1 A ARG 12 ? NH2 ? A ARG 13 NH2 11 1 Y 1 A GLU 16 ? CG ? A GLU 17 CG 12 1 Y 1 A GLU 16 ? CD ? A GLU 17 CD 13 1 Y 1 A GLU 16 ? OE1 ? A GLU 17 OE1 14 1 Y 1 A GLU 16 ? OE2 ? A GLU 17 OE2 15 1 Y 1 A PHE 22 ? CG ? A PHE 23 CG 16 1 Y 1 A PHE 22 ? CD1 ? A PHE 23 CD1 17 1 Y 1 A PHE 22 ? CD2 ? A PHE 23 CD2 18 1 Y 1 A PHE 22 ? CE1 ? A PHE 23 CE1 19 1 Y 1 A PHE 22 ? CE2 ? A PHE 23 CE2 20 1 Y 1 A PHE 22 ? CZ ? A PHE 23 CZ 21 1 Y 1 A GLU 50 ? CG ? A GLU 51 CG 22 1 Y 1 A GLU 50 ? CD ? A GLU 51 CD 23 1 Y 1 A GLU 50 ? OE1 ? A GLU 51 OE1 24 1 Y 1 A GLU 50 ? OE2 ? A GLU 51 OE2 25 1 Y 1 A ARG 97 ? CG ? A ARG 98 CG 26 1 Y 1 A ARG 97 ? CD ? A ARG 98 CD 27 1 Y 1 A ARG 97 ? NE ? A ARG 98 NE 28 1 Y 1 A ARG 97 ? CZ ? A ARG 98 CZ 29 1 Y 1 A ARG 97 ? NH1 ? A ARG 98 NH1 30 1 Y 1 A ARG 97 ? NH2 ? A ARG 98 NH2 31 1 Y 1 A ASP 98 ? CG ? A ASP 99 CG 32 1 Y 1 A ASP 98 ? OD1 ? A ASP 99 OD1 33 1 Y 1 A ASP 98 ? OD2 ? A ASP 99 OD2 34 1 Y 1 B GLU 16 ? CG ? B GLU 17 CG 35 1 Y 1 B GLU 16 ? CD ? B GLU 17 CD 36 1 Y 1 B GLU 16 ? OE1 ? B GLU 17 OE1 37 1 Y 1 B GLU 16 ? OE2 ? B GLU 17 OE2 38 1 Y 1 B LYS 19 ? CG ? B LYS 20 CG 39 1 Y 1 B LYS 19 ? CD ? B LYS 20 CD 40 1 Y 1 B LYS 19 ? CE ? B LYS 20 CE 41 1 Y 1 B LYS 19 ? NZ ? B LYS 20 NZ 42 1 Y 1 B GLU 50 ? CG ? B GLU 51 CG 43 1 Y 1 B GLU 50 ? CD ? B GLU 51 CD 44 1 Y 1 B GLU 50 ? OE1 ? B GLU 51 OE1 45 1 Y 1 B GLU 50 ? OE2 ? B GLU 51 OE2 46 1 Y 1 B GLU 69 ? CG ? B GLU 70 CG 47 1 Y 1 B GLU 69 ? CD ? B GLU 70 CD 48 1 Y 1 B GLU 69 ? OE1 ? B GLU 70 OE1 49 1 Y 1 B GLU 69 ? OE2 ? B GLU 70 OE2 50 1 Y 1 B GLU 77 ? CG ? B GLU 78 CG 51 1 Y 1 B GLU 77 ? CD ? B GLU 78 CD 52 1 Y 1 B GLU 77 ? OE1 ? B GLU 78 OE1 53 1 Y 1 B GLU 77 ? OE2 ? B GLU 78 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ASP 98 ? B ASP 99 2 1 Y 1 B MET 99 ? B MET 100 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #